-- dump date 20140620_054939 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 588858000001 SEQ_END SEQ_END NC_016855.1 93832 93832 DR NC_016855.1; contig end 93832..93832 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 588858000002 SEQ_END SEQ_END NC_016856.1 4870265 4870265 DR NC_016856.1; contig end 4870265..4870265 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235533.1 CDS STM14_5526 NC_016855.1 94 378 D putative cytoplasmic protein 94..378 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235534.1 CDS repC NC_016855.1 1333 1599 D DNA replication 1333..1599 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235535.1 CDS repA3 NC_016855.1 1722 1844 D DNA replication 1722..1844 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235536.1 CDS tap NC_016855.1 1849 1926 D replication of plasmid 1849..1926 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235537.1 CDS repA NC_016855.1 1907 2788 D DNA replication 1907..2788 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235538.1 CDS STM14_5532 NC_016855.1 3729 3869 D putative outer membrane protein 3729..3869 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235539.1 CDS srgC NC_016855.1 3966 4724 R sdiA-regulated protein; putative bacterial regulatory helix-turn-helix protein, araC family complement(3966..4724) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235540.1 CDS rcK NC_016855.1 4991 5548 R resistance to complement killing complement(4991..5548) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235541.1 CDS srgB NC_016855.1 5638 6537 R sdiA-regulated protein; putative outer membrane protein complement(5638..6537) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235542.1 CDS srgA NC_016855.1 6670 7323 R sdiA-regulated protein; putative thiol-disulfide isomerase or thioredoxin complement(6670..7323) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235543.1 CDS orf7 NC_016855.1 7568 7918 R putative bacterial regulatory protein, luxR family complement(7568..7918) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235544.1 CDS pefI NC_016855.1 7903 8115 R plasmid-encoded fimbriae; regulatory complement(7903..8115) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235545.1 CDS orf6 NC_016855.1 8547 9422 R putative outer membrane protein complement(8547..9422) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235546.1 CDS orf5 NC_016855.1 9675 10232 R putative outer membrane protein complement(9675..10232) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235547.1 CDS pefD NC_016855.1 10247 10939 R plasmid-encoded fimbriae;chaperone complement(10247..10939) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235548.1 CDS pefC NC_016855.1 10932 13340 R plasmid-encoded fimbriae; usher protein complement(10932..13340) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235549.1 CDS pefA NC_016855.1 13568 14086 R plasmid-encoded fimbriae; major fimbrial subunit complement(13568..14086) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235550.1 CDS pefB NC_016855.1 14361 14663 R plasmid-encoded fimbriae;regulation complement(14361..14663) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235551.1 CDS STM14_5545 NC_016855.1 15560 15763 D hypothetical protein 15560..15763 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235552.1 CDS repA2 NC_016855.1 16635 17624 R DNA replication complement(16635..17624) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235553.1 CDS STM14_5547 NC_016855.1 17368 17676 D hypothetical protein 17368..17676 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235554.1 CDS STM14_5548 NC_016855.1 18118 18414 R putative cytoplasmic protein complement(18118..18414) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235555.1 CDS STM14_5549 NC_016855.1 18898 19419 R hypothetical protein complement(18898..19419) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235556.1 CDS ccdA NC_016855.1 20095 20313 D toxin addiction system: antidote 20095..20313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235557.1 CDS ccdB NC_016855.1 20315 20620 D toxin addiction system: toxin 20315..20620 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235558.1 CDS STM14_5552 NC_016855.1 20622 20912 D putative cytoplasmic protein 20622..20912 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235559.1 CDS STM14_5553 NC_016855.1 20909 21430 D putative cytoplasmic protein 20909..21430 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235560.1 CDS rsdB NC_016855.1 21465 22247 D resolvase 21465..22247 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235561.1 CDS STM14_5555 NC_016855.1 22256 22807 D diguanylate cyclase 22256..22807 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235562.1 CDS STM14_5556 NC_016855.1 23476 23961 D putative inner membrane protein 23476..23961 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235563.1 CDS STM14_5557 NC_016855.1 24681 25241 D putative adhesin 24681..25241 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235564.1 CDS STM14_5558 NC_016855.1 25308 25658 R putative transposase complement(25308..25658) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235565.1 CDS STM14_5559 NC_016855.1 25876 26139 D putative transposase, IS200-like protein 25876..26139 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235566.1 CDS spvD NC_016855.1 26266 26916 R involved in Salmonella plasmid virulence; hydrophilic protein complement(26266..26916) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235567.1 CDS spvC NC_016855.1 27177 27902 R involved in Salmonella plasmid virulence; hydrophilic protein complement(27177..27902) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235568.1 CDS spvB NC_016855.1 28183 29958 R involved in Salmonella plasmid virulence; hydrophilic protein complement(28183..29958) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235569.1 CDS spvA NC_016855.1 30140 30907 R involved in Salmonella plasmid virulence; outer membrane protein complement(30140..30907) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235570.1 CDS spvR NC_016855.1 31419 32312 R involved in Salmonella plasmid virulence; regulation of spv operon, lysR family complement(31419..32312) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235571.1 CDS STM14_5565 NC_016855.1 32921 33958 D putative integrase protein 32921..33958 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235572.1 CDS STM14_5566 NC_016855.1 34147 35172 R putative phosphoribulokinase / uridine kinase family complement(34147..35172) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235573.1 CDS STM14_5567 NC_016855.1 35105 36769 R putative integrase protein complement(35105..36769) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235574.1 CDS rlgA NC_016855.1 36753 37313 R putative resolvase complement(36753..37313) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235575.1 CDS STM14_5569 NC_016855.1 37520 38260 R putative carbonic anhydrase complement(37520..38260) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235576.1 CDS STM14_5570 NC_016855.1 38915 39403 R putative cytoplasmic protein complement(38915..39403) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235577.1 CDS tlpA NC_016855.1 39662 40777 D alpha-helical coiled coil protein 39662..40777 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235578.1 CDS STM14_5572 NC_016855.1 40863 41279 D putative DNA polymerase III epsilon subunit (3'-5' exonuclease) 40863..41279 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235579.1 CDS STM14_5573 NC_016855.1 40973 41299 R putative cytoplasmic protein complement(40973..41299) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235580.1 CDS STM14_5574 NC_016855.1 42453 43394 R putative cytoplasmic protein complement(42453..43394) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235581.1 CDS parA NC_016855.1 43809 45014 D plasmid partition protein A 43809..45014 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235582.1 CDS parB NC_016855.1 45011 45988 D plasmid partition protein B 45011..45988 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235583.1 CDS samB NC_016855.1 46070 47344 R mutagenesis by UV and mutagens; related to umuDC operon; SamB complement(46070..47344) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235584.1 CDS samA NC_016855.1 47344 47766 R mutagenesis by UV and mutagens; related to umuDC operon; SamA complement(47344..47766) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235585.1 CDS STM14_5579 NC_016855.1 48277 48747 D putative cytoplasmic protein 48277..48747 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235586.1 CDS STM14_5580 NC_016855.1 48740 49096 D putative cytoplasmic protein 48740..49096 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235587.1 CDS STM14_5581 NC_016855.1 49478 50158 D putative adenine-specific DNA methylase 49478..50158 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235588.1 CDS STM14_5582 NC_016855.1 50158 50379 D putative cytoplasmic protein 50158..50379 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235589.1 CDS STM14_5583 NC_016855.1 50920 51684 D putative inner membrane protein 50920..51684 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235590.1 CDS STM14_5584 NC_016855.1 52180 52614 D putative cytoplasmic protein 52180..52614 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235591.1 CDS STM14_5585 NC_016855.1 52681 53115 D putative cytoplasmic protein 52681..53115 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235592.1 CDS STM14_5586 NC_016855.1 53351 53674 D putative inner membrane protein 53351..53674 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235593.1 CDS ssbB NC_016855.1 54375 54893 D single-strand binding protein 54375..54893 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235594.1 CDS STM14_5588 NC_016855.1 54948 55190 D putative cytoplasmic protein 54948..55190 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235595.1 CDS STM14_5589 NC_016855.1 55259 57256 D putative ParB-like nuclease domain protein 55259..57256 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235596.1 CDS psiB NC_016855.1 57296 57730 D Plasmid SOS inhibition 57296..57730 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235597.1 CDS psiA NC_016855.1 57727 58464 D Plasmid SOS inhibition 57727..58464 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235598.1 CDS finP NC_016855.1 60103 60573 R putative transglycosylase complement(60103..60573) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235599.1 CDS traM NC_016855.1 60988 61368 D conjugative transfer: mating signal 60988..61368 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235600.1 CDS traJ NC_016855.1 61561 62247 D conjugative transfer: regulation 61561..62247 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235601.1 CDS traY NC_016855.1 62248 62568 D conjugative transfer: oriT nicking 62248..62568 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235602.1 CDS traA NC_016855.1 62610 62972 D conjugative transfer: fimbrial subunit 62610..62972 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235603.1 CDS traL NC_016855.1 62987 63298 D conjugative transfer: assembly 62987..63298 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235604.1 CDS traE NC_016855.1 63320 63886 D conjugative transfer: assembly 63320..63886 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235605.1 CDS traK NC_016855.1 63873 64613 D conjugative transfer: assembly 63873..64613 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235606.1 CDS traB NC_016855.1 64613 66034 D conjugative transfer: assembly 64613..66034 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235607.1 CDS traP NC_016855.1 66024 66620 D conjugative transfer protein 66024..66620 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235608.1 CDS trbD NC_016855.1 66598 66843 D conjugative transfer protein 66598..66843 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235609.1 CDS traV NC_016855.1 66840 67355 D conjugative transfer: assembly 66840..67355 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235610.1 CDS traR NC_016855.1 67490 67711 D conjugative transfer protein 67490..67711 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235611.1 CDS STM14_5606 NC_016855.1 67704 68171 D conjugative transfer protein 67704..68171 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235612.1 CDS traC NC_016855.1 68567 71215 D conjugative transfer: assembly 68567..71215 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235613.1 CDS trbI NC_016855.1 71190 71576 D conjugative transfer protein 71190..71576 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235614.1 CDS traW NC_016855.1 71573 72205 D conjugative transfer: assembly 71573..72205 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235615.1 CDS traU NC_016855.1 72202 73194 D conjugative transfer: assembly 72202..73194 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235616.1 CDS STM14_5611 NC_016855.1 73213 73521 D conjugative transfer protein 73213..73521 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235617.1 CDS trbC NC_016855.1 73506 74144 D conjugative transfer: assembly 73506..74144 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235618.1 CDS traN NC_016855.1 74597 76423 D conjugative transfer: aggregate stability 74597..76423 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235619.1 CDS trbE NC_016855.1 76434 76649 D conjugative transfer protein 76434..76649 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235620.1 CDS traF NC_016855.1 76661 77410 D conjugative transfer: assembly 76661..77410 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235621.1 CDS traQ NC_016855.1 77624 77917 D conjugative transfer: fimbrial synthesis 77624..77917 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235622.1 CDS trbB NC_016855.1 77904 78452 D conjugative transfer protein 77904..78452 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235623.1 CDS traH NC_016855.1 78442 79824 D conjugative transfer: assembly 78442..79824 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235624.1 CDS traG NC_016855.1 79821 82643 D conjugative transfer: assembly abd aggregate stability 79821..82643 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235625.1 CDS traS NC_016855.1 82659 83153 D conjugative transfer: surface exclusion 82659..83153 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235626.1 CDS traT NC_016855.1 83189 83920 D conjugative transfer: surface exclusion 83189..83920 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235627.1 CDS traD NC_016855.1 84297 86459 D conjugative transfer: DNA transport 84297..86459 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235628.1 CDS trbH NC_016855.1 86459 87178 D conjugative transfer protein 86459..87178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235629.1 CDS STM14_5624 NC_016855.1 86468 86866 R similar to Shigella flexneri mvpA; MvpA-like protein complement(86468..86866) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235630.1 CDS STM14_5625 NC_016855.1 86866 87096 R putative cytoplasmic protein complement(86866..87096) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235631.1 CDS traI NC_016855.1 87175 92433 D conjugative transfer: oriT nicking-unwinding 87175..92433 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235632.1 CDS traX NC_016855.1 92453 93193 D conjugative transfer: fimbrial acetylation 92453..93193 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235633.1 CDS finO NC_016855.1 93248 93811 D conjugative transfer: regulation 93248..93811 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235634.1 CDS thrL NC_016856.1 190 255 D similar to Escherichia coli thr operon leader peptide (AAC73112.1); thr operon leader peptide 190..255 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235635.1 CDS thrA NC_016856.1 337 2799 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 337..2799 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235636.1 CDS thrB NC_016856.1 2801 3730 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2801..3730 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235637.1 CDS thrC NC_016856.1 3734 5020 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3734..5020 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235638.1 CDS yaaA NC_016856.1 5114 5887 R hypothetical protein complement(5114..5887) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235639.1 CDS yaaJ NC_016856.1 5966 7396 R similar to Escherichia coli inner membrane transport protein (AAC73118.1); AGCS family; putative alanine/glycine transport protein complement(5966..7396) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235640.1 CDS talB NC_016856.1 7665 8618 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 7665..8618 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235641.1 CDS mogA NC_016856.1 8729 9319 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein 8729..9319 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235642.1 CDS yaaH NC_016856.1 9376 9942 R hypothetical protein complement(9376..9942) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235643.1 CDS htgA NC_016856.1 10092 10805 R similar to Escherichia coli putative oxidoreductase (AAC73122.1); regulator for sigma H promoters/sigma 32 promoters permitting growth at high temperature; hypothetical protein complement(10092..10805) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235644.1 CDS yaaI NC_016856.1 10841 11245 R hypothetical protein complement(10841..11245) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235645.1 CDS STM14_0012 NC_016856.1 11257 11424 D hypothetical protein 11257..11424 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235646.1 CDS dnaK NC_016856.1 11593 13509 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 11593..13509 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235647.1 CDS dnaJ NC_016856.1 13595 14734 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 13595..14734 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235648.1 CDS STM14_0015 NC_016856.1 14845 14958 D hypothetical protein 14845..14958 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235649.1 CDS STM14_0016 NC_016856.1 15014 15961 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73704.1); LysR family; putative transcriptional regulator 15014..15961 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235650.1 CDS STM14_0017 NC_016856.1 16088 16432 D putative bacteriophage protein 16088..16432 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235651.1 CDS STM14_0018 NC_016856.1 16493 17026 R hypothetical protein complement(16493..17026) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235652.1 CDS STM14_0019 NC_016856.1 17043 17486 R similar to Escherichia coli putative sensory transducer (AAC75886.1); hypothetical protein complement(17043..17486) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235653.1 CDS STM14_0020 NC_016856.1 17613 17741 R hypothetical protein complement(17613..17741) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235654.1 CDS STM14_0021 NC_016856.1 17665 17787 D hypothetical protein 17665..17787 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235655.1 CDS STM14_0022 NC_016856.1 17867 19966 D putative exochitinase 17867..19966 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235656.1 CDS STM14_0023 NC_016856.1 20058 23054 D putative hydroxymethyltransferase 20058..23054 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235657.1 CDS STM14_0024 NC_016856.1 23091 23240 D hypothetical protein 23091..23240 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235658.1 CDS STM14_0025 NC_016856.1 23335 24039 D putative cytoplasmic protein 23335..24039 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235659.1 CDS STM14_0026 NC_016856.1 24094 24198 R hypothetical protein complement(24094..24198) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235660.1 CDS STM14_0027 NC_016856.1 24316 24426 D hypothetical protein 24316..24426 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235661.1 CDS bcfA NC_016856.1 24469 25011 D fimbrial subunit (gi|4959511); fimbrial subunit 24469..25011 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235662.2 CDS bcfB NC_016856.1 25112 25798 D fimbrial chaperone (gi|4959512); fimbrial chaperone 25112..25798 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235663.1 CDS bcfC NC_016856.1 25803 28424 D bovine colonization factor BcfC (gi|4530570); fimbrial usher 25803..28424 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235664.1 CDS bcfD NC_016856.1 28425 29432 D fimbrial subunit (gi|4959514); fimbrial subunit 28425..29432 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235665.1 CDS bcfE NC_016856.1 29433 29978 D fimbrial subunit (gi|4959515); fimbrial subunit 29433..29978 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235666.1 CDS bcfF NC_016856.1 29994 30512 D fimbrial subunit (gi|4959516); fimbrial subunit 29994..30512 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235667.1 CDS bcfG NC_016856.1 30478 31209 D fimbrial chaperone (gi|4959517); fimbrial chaperone 30478..31209 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235668.1 CDS bcfH NC_016856.1 31274 32119 D putative thiol-disulfide isomerase 31274..32119 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235669.1 CDS STM14_0036 NC_016856.1 32116 32445 D hypothetical protein 32116..32445 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235670.1 CDS STM14_0037 NC_016856.1 32545 32994 R putative transcriptional regulator MarT (gi|4324612); putative transcriptional regulator complement(32545..32994) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235671.1 CDS STM14_0038 NC_016856.1 33364 34368 D similar to LeuO (gi|6650098); LysR family; putative transcriptional regulator 33364..34368 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235672.1 CDS STM14_0039 NC_016856.1 34376 34816 R putative transcriptional regulator MarT (gi|4324612); putative transcriptional regulator complement(34376..34816) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235673.1 CDS STM14_0040 NC_016856.1 34828 34974 D hypothetical protein 34828..34974 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235674.1 CDS STM14_0041 NC_016856.1 35339 37057 D putative arylsulfatase 35339..37057 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235675.1 CDS STM14_0042 NC_016856.1 37103 38674 R similar to Escherichia coli UDP-sugar hydrolase (5'-nucleotidase) (AAC73582.1); putative 5'-nucleotidase complement(37103..38674) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235676.1 CDS STM14_0043 NC_016856.1 38773 39534 R similar to Escherichia coli putative sugar hydrolase (AAC75461.1); putative outer membrane/exported protein complement(38773..39534) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235677.1 CDS STM14_0044 NC_016856.1 40131 41624 D similar to Escherichia coli putative sulfatase (AAC76701.1); putative arylsulfatase 40131..41624 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235678.1 CDS STM14_0045 NC_016856.1 41723 42913 D similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator 41723..42913 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235679.1 CDS STM14_0046 NC_016856.1 42932 44185 D putative cytoplasmic protein 42932..44185 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235680.1 CDS STM14_0047 NC_016856.1 44312 46027 D putative arylsulfatase 44312..46027 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235681.1 CDS nhaA NC_016856.1 46190 47356 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 46190..47356 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235682.1 CDS nhaR NC_016856.1 47418 48317 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 47418..48317 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235683.1 CDS STM14_0050 NC_016856.1 48372 50411 R putative glycosyl hydrolase complement(48372..50411) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235684.1 CDS STM14_0051 NC_016856.1 50451 51824 R similar to Escherichia coli putative permease (AAC76681.1); putative sodium galactoside symporter complement(50451..51824) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235685.1 CDS rpsT NC_016856.1 52280 52543 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(52280..52543) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235686.1 CDS yaaY NC_016856.1 52649 52864 D putative cytoplasmic protein 52649..52864 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235687.1 CDS ribF NC_016856.1 52872 53810 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 52872..53810 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235688.1 CDS ileS NC_016856.1 53855 56689 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 53855..56689 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235689.1 CDS lspA NC_016856.1 56689 57189 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 56689..57189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235690.1 CDS STM14_0057 NC_016856.1 57203 57334 D hypothetical protein 57203..57334 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235691.1 CDS slpA NC_016856.1 57344 57793 D similar to Escherichia coli FKBX-type 16KD peptidyl-prolyl cis-trans isomerase; rotamase (AAC73139.1); FKBP-type peptidyl-prolyl cis-trans isomerase 57344..57793 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235692.1 CDS ispH NC_016856.1 57796 58746 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 57796..58746 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235693.1 CDS STM14_0060 NC_016856.1 58946 60148 D putative nitrite reductase 58946..60148 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235694.1 CDS rihC NC_016856.1 60164 61084 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 60164..61084 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235695.1 CDS STM14_0062 NC_016856.1 61106 61792 R similar to Escherichia coli sequence similarity to Shigella regulator (AAC73721.1); sensor for citrate; putative transcriptional regulator complement(61106..61792) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235696.1 CDS STM14_0063 NC_016856.1 61794 63413 R similar to Escherichia coli putative sensor-type protein (AAC73720.1); histidine kinase for citrate; putative transcriptional regulator complement(61794..63413) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235697.1 CDS STM14_0064 NC_016856.1 63548 64849 R oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); putative oxalacetate decarboxylase subunit beta complement(63548..64849) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235698.1 CDS STM14_0065 NC_016856.1 64862 66637 R catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B complement(64862..66637) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235699.1 CDS STM14_0066 NC_016856.1 66654 66893 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(66654..66893) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235700.1 CDS STM14_0067 NC_016856.1 67052 68392 R putative citrate-sodium symporter complement(67052..68392) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235701.1 CDS STM14_0068 NC_016856.1 68513 68671 R hypothetical protein complement(68513..68671) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235702.1 CDS citC2 NC_016856.1 68637 69680 D similar to Escherichia coli citrate lyase synthetase; citrate (pro-3S)-lyase ligase (AAC73719.1); putative citrate lyase synthetase 68637..69680 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235703.1 CDS citD2 NC_016856.1 69710 70003 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 69710..70003 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235704.1 CDS citE2 NC_016856.1 70000 70869 D similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); putative citrate lyase beta chain 70000..70869 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235705.1 CDS citF2 NC_016856.1 70880 72400 D similar to Escherichia coli citrate lyase alpha chain (AAC73716.1); putative citrate lyase alpha chain/citrate-ACP transferase 70880..72400 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235706.1 CDS citX2 NC_016856.1 72400 72951 D putative cytoplasmic protein 72400..72951 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235707.1 CDS citG2 NC_016856.1 72929 73837 D putative modifier of citrate lyase protein; triphosphoribosyl-dephospho-CoA synthase 72929..73837 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235708.1 CDS dapB NC_016856.1 74017 74838 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 74017..74838 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235709.1 CDS STM14_0076 NC_016856.1 74964 75239 R hypothetical protein complement(74964..75239) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235710.1 CDS carA NC_016856.1 75881 77029 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 75881..77029 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235711.1 CDS carB NC_016856.1 77048 80275 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 77048..80275 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235712.1 CDS STM14_0079 NC_016856.1 80354 80542 D hypothetical protein 80354..80542 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235713.1 CDS tnpA_1 NC_016856.1 80499 80957 D transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 80499..80957 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235714.1 CDS caiF NC_016856.1 81260 81655 D regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; DNA-binding transcriptional activator CaiF 81260..81655 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235715.1 CDS caiE NC_016856.1 81732 82328 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE complement(81732..82328) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235716.1 CDS caiD NC_016856.1 82437 83222 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase complement(82437..83222) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235717.1 CDS caiC NC_016856.1 83276 84829 R similar to Escherichia coli probable crotonobetaine/carnitine-CoA ligase (AAC73148.1); putative crotonobetaine/carnitine-CoA ligase complement(83276..84829) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235718.1 CDS caiB NC_016856.1 84892 86109 R catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase complement(84892..86109) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235719.1 CDS STM14_0086 NC_016856.1 86109 86246 R hypothetical protein complement(86109..86246) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235720.1 CDS caiA NC_016856.1 86221 87363 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase complement(86221..87363) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235721.1 CDS caiT NC_016856.1 87398 88915 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter complement(87398..88915) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235722.1 CDS STM14_0089 NC_016856.1 89119 89328 D hypothetical protein 89119..89328 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235723.1 CDS fixA NC_016856.1 89396 90166 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; putative electron transfer flavoprotein FixA 89396..90166 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235724.1 CDS fixB NC_016856.1 90182 91123 D involved in electron transfer during carnitine metabolism; putative electron transfer flavoprotein FixB 90182..91123 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235725.1 CDS fixC NC_016856.1 91173 92459 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; putative oxidoreductase FixC 91173..92459 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235726.1 CDS fixX NC_016856.1 92456 92743 D similar to Escherichia coli putative ferredoxin (AAC73155.1); carnitine metabolism; putative ferredoxin 92456..92743 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235727.1 CDS yaaU NC_016856.1 92890 94230 D similar to Escherichia coli putative transport protein (AAC73156.1); MFS family; putative transport protein 92890..94230 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235728.1 CDS STM14_0095 NC_016856.1 94319 94549 D putative outer membrane lipoprotein 94319..94549 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235729.1 CDS STM14_0096 NC_016856.1 94843 95259 D hypothetical protein 94843..95259 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235730.1 CDS STM14_0097 NC_016856.1 95263 95379 R hypothetical protein complement(95263..95379) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235731.1 CDS STM14_0098 NC_016856.1 95483 95773 R hypothetical protein complement(95483..95773) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235732.1 CDS STM14_0099 NC_016856.1 95983 96177 D putative inner membrane protein 95983..96177 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235733.1 CDS STM14_0100 NC_016856.1 96671 98560 D similar to Escherichia coli putative sulfatase (AAC76701.1); putative sulfatase 96671..98560 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235734.1 CDS STM14_0101 NC_016856.1 98644 98802 R hypothetical protein complement(98644..98802) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235735.1 CDS STM14_0102 NC_016856.1 98738 99019 D hypothetical protein 98738..99019 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235736.1 CDS yabF NC_016856.1 98967 99497 D Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 98967..99497 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235737.1 CDS kefC NC_016856.1 99490 101352 D transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 99490..101352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235738.1 CDS STM14_0105 NC_016856.1 101349 101474 R hypothetical protein complement(101349..101474) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235739.1 CDS folA NC_016856.1 101551 102030 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 101551..102030 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235740.1 CDS apaH NC_016856.1 102136 102984 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(102136..102984) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235741.1 CDS apaG NC_016856.1 102995 103372 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(102995..103372) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235742.1 CDS ksgA NC_016856.1 103375 104196 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(103375..104196) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235743.1 CDS pdxA_1 NC_016856.1 104193 105182 R NAD-dependent; catalyzes the oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which then decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(104193..105182) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235744.1 CDS surA NC_016856.1 105182 106468 R Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA complement(105182..106468) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235745.1 CDS imp NC_016856.1 106522 108882 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(106522..108882) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235746.1 CDS STM14_0113 NC_016856.1 108892 109053 R hypothetical protein complement(108892..109053) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235747.1 CDS djlA NC_016856.1 109136 109948 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; DNA-J like membrane chaperone protein 109136..109948 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235748.1 CDS rluA NC_016856.1 110043 110702 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A complement(110043..110702) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235749.1 CDS hepA NC_016856.1 110714 113620 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(110714..113620) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235750.1 CDS polB NC_016856.1 113794 116145 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(113794..116145) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235751.2 CDS STM14_0118 NC_016856.1 116189 116809 R hypothetical protein complement(116189..116809) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235752.1 CDS STM14_0119 NC_016856.1 117528 117947 D putative cytoplasmic protein 117528..117947 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235753.1 CDS araD NC_016856.1 117953 118648 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(117953..118648) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235754.1 CDS araA NC_016856.1 118789 120291 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase complement(118789..120291) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235755.1 CDS araB NC_016856.1 120302 122011 R catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase complement(120302..122011) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235756.1 CDS araC NC_016856.1 122352 123197 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 122352..123197 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235757.1 CDS yabI NC_016856.1 123316 124083 D DedA family; hypothetical protein 123316..124083 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235758.1 CDS thiQ NC_016856.1 124122 124829 R with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit complement(124122..124829) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235759.1 CDS thiP NC_016856.1 124813 126423 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(124813..126423) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235760.1 CDS tbpA NC_016856.1 126399 127382 R part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit complement(126399..127382) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235761.1 CDS STM14_0128 NC_016856.1 127427 127546 R putative lipoprotein complement(127427..127546) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235762.1 CDS yabN NC_016856.1 127560 129218 R activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR complement(127560..129218) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235763.1 CDS STM14_0130 NC_016856.1 129166 129492 R hypothetical protein complement(129166..129492) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235764.1 CDS leuD NC_016856.1 129769 130374 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(129769..130374) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235765.1 CDS leuC NC_016856.1 130385 131785 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(130385..131785) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235766.1 CDS leuB NC_016856.1 131788 132879 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(131788..132879) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235767.1 CDS leuA NC_016856.1 132879 134450 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(132879..134450) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235768.1 CDS leuL NC_016856.1 134538 134624 R leu operon leader peptide (SW:LPL_SALTY); leu operon leader peptide complement(134538..134624) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235769.1 CDS STM14_0136 NC_016856.1 134689 134793 R hypothetical protein complement(134689..134793) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235770.1 CDS STM14_0137 NC_016856.1 135067 135210 D hypothetical protein 135067..135210 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235771.1 CDS leuO NC_016856.1 135281 136225 D activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 135281..136225 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235772.1 CDS ilvI NC_016856.1 136610 138271 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 136610..138271 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235773.1 CDS ilvH NC_016856.1 138274 138765 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 138274..138765 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235774.1 CDS STM14_0141 NC_016856.1 138755 138877 R hypothetical protein complement(138755..138877) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235775.1 CDS fruR NC_016856.1 139049 140053 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 139049..140053 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235776.1 CDS STM14_0143 NC_016856.1 140204 140338 R hypothetical protein complement(140204..140338) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235777.1 CDS STM14_0144 NC_016856.1 140496 140633 D hypothetical protein 140496..140633 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235778.1 CDS yabB NC_016856.1 140659 141117 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 140659..141117 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235779.1 CDS mraW NC_016856.1 141119 142060 D similar to Escherichia coli putative apolipoprotein (AAC73193.1); S-adenosyl-methyltransferase MraW 141119..142060 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235780.1 CDS ftsL NC_016856.1 142057 142422 D membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 142057..142422 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235781.1 CDS ftsI NC_016856.1 142438 144204 D similar to Escherichia coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); division specific transpeptidase 142438..144204 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235782.1 CDS murE NC_016856.1 144191 145678 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 144191..145678 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235783.1 CDS murF NC_016856.1 145675 147033 D similar to Escherichia coli D-alanine-D-alanine-adding enzyme (AAC73197.1); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 145675..147033 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235784.1 CDS mraY NC_016856.1 147027 148109 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 147027..148109 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235785.1 CDS murD NC_016856.1 148112 149428 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 148112..149428 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235786.1 CDS ftsW NC_016856.1 149428 150672 D integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 149428..150672 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235787.1 CDS murG NC_016856.1 150669 151736 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; N-acetylglucosaminyl transferase 150669..151736 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235788.1 CDS murC NC_016856.1 151855 153330 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 151855..153330 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235789.1 CDS ddl_2 NC_016856.1 153323 154243 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 153323..154243 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235790.1 CDS ftsQ NC_016856.1 154245 155075 D involved in septum formation; cell division protein FtsQ 154245..155075 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235791.1 CDS ftsA NC_016856.1 155072 156334 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 155072..156334 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235792.1 CDS ftsZ NC_016856.1 156395 157546 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 156395..157546 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235793.1 CDS lpxC NC_016856.1 157647 158564 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 157647..158564 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235794.1 CDS yacA NC_016856.1 158843 159340 D secM translational pause allows for the initiation of secA translation; SecA regulator SecM 158843..159340 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235795.1 CDS secA NC_016856.1 159402 162107 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 159402..162107 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235796.1 CDS mutT NC_016856.1 162259 162654 D similar to Escherichia coli 7,8-dihydro-8-oxoguanine-triphosphatase; prefers dGTP; causes AT-GC transversions (AAC73210.1); nucleoside triphosphate pyrophosphohydrolase 162259..162654 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235797.1 CDS STM14_0165 NC_016856.1 162875 162979 D LysR family transcriptional regulator 162875..162979 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235798.1 CDS yacG NC_016856.1 162976 163167 R zinc-binding protein complement(162976..163167) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235799.1 CDS yacF NC_016856.1 163177 163920 R hypothetical protein complement(163177..163920) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235800.1 CDS coaE NC_016856.1 163920 164540 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(163920..164540) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235801.1 CDS guaC NC_016856.1 164766 165809 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 164766..165809 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235802.1 CDS hofC NC_016856.1 165840 167042 R similar to Escherichia coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73217.1); type IV pilin biogenesis protein complement(165840..167042) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235803.1 CDS hofB NC_016856.1 167032 168417 R similar to Escherichia coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73218.1); hypothetical protein complement(167032..168417) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235804.1 CDS ppdD NC_016856.1 168427 168864 R similar to Escherichia coli prepilin peptidase dependent protein (AAC73219.1); putative major pilin subunit complement(168427..168864) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235805.1 CDS STM14_0173 NC_016856.1 168890 169072 R hypothetical protein complement(168890..169072) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235806.1 CDS nadC NC_016856.1 169086 169979 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase complement(169086..169979) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235807.1 CDS ampD NC_016856.1 170067 170630 D AMPD protein (SW:AMPD_SALTY); N-acetyl-anhydromuranmyl-L-alanine amidase 170067..170630 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235808.1 CDS ampE NC_016856.1 170627 171481 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 170627..171481 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235809.1 CDS STM14_0177 NC_016856.1 171573 172523 R putative cytoplasmic protein complement(171573..172523) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235810.1 CDS STM14_0178 NC_016856.1 172523 173929 R Na+/galactoside symporter complement(172523..173929) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235811.1 CDS STM14_0179 NC_016856.1 173962 174090 R hypothetical protein complement(173962..174090) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235812.1 CDS aroP NC_016856.1 174093 175466 R similar to Escherichia coli aromatic amino acid transport protein (AAC73223.1); APC family; aromatic amino acid transporter complement(174093..175466) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235813.1 CDS STM14_0181 NC_016856.1 175672 175794 D hypothetical protein 175672..175794 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235814.1 CDS pdhR NC_016856.1 176029 176793 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 176029..176793 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235815.1 CDS aceE NC_016856.1 176953 179616 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 176953..179616 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235816.1 CDS aceF NC_016856.1 179631 181520 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 179631..181520 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235817.1 CDS lpdA NC_016856.1 181720 183144 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 181720..183144 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235818.1 CDS STM14_0186 NC_016856.1 183222 183350 D hypothetical protein 183222..183350 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235819.1 CDS STM14_0187 NC_016856.1 183433 183717 D putative outer membrane protein 183433..183717 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235820.1 CDS STM14_0188 NC_016856.1 183755 184546 R hypothetical protein complement(183755..184546) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235821.1 CDS acnB NC_016856.1 186562 189159 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 186562..189159 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235822.1 CDS STM14_0191 NC_016856.1 189220 190062 R putative restriction endonuclease complement(189220..190062) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235823.1 CDS yacL NC_016856.1 190308 190670 D hypothetical protein 190308..190670 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235824.1 CDS kdgT NC_016856.1 190905 191858 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 190905..191858 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235825.1 CDS STM14_0194 NC_016856.1 191855 193126 D putative inner membrane protein 191855..193126 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235826.1 CDS pdxA_2 NC_016856.1 193116 194099 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 193116..194099 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235827.1 CDS STM14_0196 NC_016856.1 194109 194876 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC75777.1); LysR family; putative transcriptional regulator 194109..194876 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235828.1 CDS speD NC_016856.1 194906 195700 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(194906..195700) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235829.1 CDS speE NC_016856.1 195721 196581 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(195721..196581) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235830.1 CDS yacC NC_016856.1 196688 197035 R hypothetical protein complement(196688..197035) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235831.1 CDS cueO NC_016856.1 197237 198847 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 197237..198847 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235832.1 CDS gcd NC_016856.1 198925 201315 R similar to Escherichia coli glucose dehydrogenase (AAC73235.1); glucose dehydrogenase complement(198925..201315) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235833.1 CDS hpt NC_016856.1 201521 202057 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 201521..202057 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235834.1 CDS yadF NC_016856.1 202115 202777 R catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase complement(202115..202777) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235835.1 CDS yadG NC_016856.1 202886 203812 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC73238.1); putative ABC-type multidrug transport system ATPase component 202886..203812 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235836.1 CDS yadH NC_016856.1 203809 204579 D putative ABC superfamily membrane protein; putative transport protein 203809..204579 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235837.1 CDS stiH NC_016856.1 204696 205775 R LpfD protein precursor (SW:LPFD_SALTY); putative fimbrial protein precurosr complement(204696..205775) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235838.1 CDS stiC NC_016856.1 205784 208330 R similar to Escherichia coli putative outer membrane protein (AAC76178.1); fimbrial usher protein complement(205784..208330) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235839.1 CDS stiB NC_016856.1 208357 209040 R similar to Escherichia coli periplasmic chaperone, required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone complement(208357..209040) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235840.1 CDS stiA NC_016856.1 209088 209627 R similar to Escherichia coli major type 1 subunit fimbrin; pilin (AAC77270.1); putative fimbrial subunit complement(209088..209627) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235841.1 CDS STM14_0210 NC_016856.1 209796 209966 R hypothetical protein complement(209796..209966) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235842.1 CDS yadI NC_016856.1 209997 210437 D similar to Escherichia coli putative PTS enzyme II B component (AAC73240.1); putative PTS enzyme 209997..210437 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235843.1 CDS yadE NC_016856.1 210499 211728 D putative xylanase/chitin deacetylase 210499..211728 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235844.1 CDS panD NC_016856.1 211735 212115 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(211735..212115) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235845.1 CDS panC NC_016856.1 212210 213064 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(212210..213064) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235846.1 CDS STM14_0215 NC_016856.1 213058 213171 R hypothetical protein complement(213058..213171) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235847.1 CDS panB NC_016856.1 213190 213981 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(213190..213981) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235848.1 CDS folK NC_016856.1 214102 214581 R catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(214102..214581) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235849.1 CDS pcnB NC_016856.1 214578 215996 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase I complement(214578..215996) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235850.1 CDS yadB NC_016856.1 216137 217033 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase complement(216137..217033) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235851.1 CDS dksA NC_016856.1 217102 217557 R dnaK suppressor protein (SW:DKSA_SALTY); suppresses dnaK deletion; DnaK transcriptional regulator DksA complement(217102..217557) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235852.1 CDS sfsA NC_016856.1 217734 218438 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(217734..218438) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235853.1 CDS ligT NC_016856.1 218455 218985 R 2'-5' RNA ligase complement(218455..218985) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235854.1 CDS hrpB NC_016856.1 219013 221487 D similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 219013..221487 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235855.1 CDS STM14_0224 NC_016856.1 221426 221587 D hypothetical protein 221426..221587 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235856.1 CDS STM14_0225 NC_016856.1 221522 221629 R hypothetical protein complement(221522..221629) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235857.1 CDS mrcB NC_016856.1 221628 224150 D bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b 221628..224150 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235858.1 CDS STM14_0227 NC_016856.1 224289 224429 R hypothetical protein complement(224289..224429) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235859.1 CDS fhuA NC_016856.1 224443 226632 D involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 224443..226632 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235860.1 CDS fhuC NC_016856.1 226681 227478 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 226681..227478 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235861.1 CDS fhuD NC_016856.1 227478 228368 D Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 227478..228368 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235862.1 CDS fhuB NC_016856.1 228365 230422 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 228365..230422 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235863.1 CDS STM14_0232 NC_016856.1 230459 230665 D hypothetical protein 230459..230665 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235864.1 CDS STM14_0233 NC_016856.1 231001 231144 D hypothetical protein 231001..231144 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235865.1 CDS stfA NC_016856.1 231361 231921 D major fimbrial subunit StfA (gi|3747029); putative fimbrial subunit 231361..231921 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235866.1 CDS stfC NC_016856.1 232007 234664 D outer membrane usher protein StfC (gi|3747030); putative fimbrial outer membrane usher 232007..234664 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235867.1 CDS stfD NC_016856.1 234682 235434 D periplasmic fimbrial chaperone StfD (gi|3747031); putative periplasmic fimbrial chaperone 234682..235434 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235868.1 CDS stfE NC_016856.1 235453 235965 D minor fimbrial subunit StfE (gi|3747032); putative minor fimbrial subunit 235453..235965 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235869.1 CDS stfF NC_016856.1 235962 236438 D minor fimbrial subunit StfF (gi|3747033); putative minor fimbrial subunit 235962..236438 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235870.1 CDS stfG NC_016856.1 236438 236968 D minor fimbrial subunit StfG (gi|3747034); putative adhesin; putative minor fimbrial subunit 236438..236968 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235871.1 CDS STM14_0240 NC_016856.1 236968 237807 D hypothetical 30.2 da protein in stfG 3'region precursor (SW:YADU_SALTY); putative outer membrane protein 236968..237807 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235872.1 CDS hemL NC_016856.1 237915 239195 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(237915..239195) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235873.1 CDS STM14_0242 NC_016856.1 239222 239365 D hypothetical protein 239222..239365 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235874.1 CDS yadQ NC_016856.1 239365 240786 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 239365..240786 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235875.1 CDS yadR NC_016856.1 240868 241212 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 240868..241212 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235876.1 CDS yadS NC_016856.1 241313 241936 R hypothetical protein complement(241313..241936) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235877.1 CDS btuF NC_016856.1 241973 242773 R solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF complement(241973..242773) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235878.1 CDS pfs NC_016856.1 242766 243464 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(242766..243464) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235879.1 CDS dgt NC_016856.1 243549 245066 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 243549..245066 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235880.1 CDS htrA NC_016856.1 245196 246623 D protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 245196..246623 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235881.1 CDS cdaR NC_016856.1 246776 247933 D regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 246776..247933 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235882.1 CDS yaeH NC_016856.1 248022 248408 R similar to Escherichia coli putative structural protein (AAC73274.1); hypothetical protein complement(248022..248408) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235883.1 CDS dapD NC_016856.1 249994 250818 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(249994..250818) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235884.1 CDS glnD NC_016856.1 250848 253520 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(250848..253520) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235885.1 CDS map NC_016856.1 253757 254551 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(253757..254551) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235886.1 CDS STM14_0256 NC_016856.1 254799 255083 D 30S ribosomal protein S2 254799..255083 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235887.1 CDS rpsB NC_016856.1 255002 255727 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 255002..255727 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235888.1 CDS tsf NC_016856.1 255985 256836 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 255985..256836 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235889.1 CDS pyrH NC_016856.1 256981 257706 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 256981..257706 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235890.1 CDS frr NC_016856.1 257853 258410 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 257853..258410 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235891.1 CDS dxr NC_016856.1 258551 259747 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 258551..259747 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235892.1 CDS STM14_0262 NC_016856.1 259830 260033 D hypothetical protein 259830..260033 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235893.1 CDS uppS NC_016856.1 260060 260818 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 260060..260818 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235894.1 CDS cdsA NC_016856.1 260831 261688 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 260831..261688 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235895.1 CDS yaeL NC_016856.1 261700 263052 D zinc metallopeptidase 261700..263052 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235896.1 CDS yaeT NC_016856.1 263084 265498 D part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 263084..265498 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235897.1 CDS hlpA NC_016856.1 265621 266106 D (SW:OMPH_SALTY); histone-like protein; periplasmic chaperone 265621..266106 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235898.1 CDS lpxD NC_016856.1 266110 267135 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 266110..267135 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235899.1 CDS fabZ NC_016856.1 267151 267696 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 267151..267696 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235900.1 CDS lpxA NC_016856.1 267700 268488 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 267700..268488 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235901.1 CDS lpxB NC_016856.1 268488 269636 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 268488..269636 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235902.1 CDS rnhB NC_016856.1 269633 270229 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 269633..270229 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235903.1 CDS dnaE NC_016856.1 270253 273735 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 270253..273735 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235904.1 CDS accA NC_016856.1 273748 274707 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 273748..274707 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235905.1 CDS STM14_0275 NC_016856.1 274887 276650 D putative endochitinase 274887..276650 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235906.1 CDS ldcC NC_016856.1 276726 278867 D similar to Escherichia coli lysine decarboxylase 2; constitutive (AAC73297.1); lysine decarboxylase 2 276726..278867 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235907.1 CDS yaeR NC_016856.1 278923 279312 D hypothetical protein 278923..279312 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235908.1 CDS tilS NC_016856.1 279375 280667 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 279375..280667 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235909.1 CDS rof NC_016856.1 280751 281011 R Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator complement(280751..281011) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235910.1 CDS yaeP NC_016856.1 280998 281216 R hypothetical protein complement(280998..281216) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235911.1 CDS yaeQ NC_016856.1 281396 281941 D hypothetical 20.8 kDa protein in mesJ-cutF intergenic region (SW:YAEQ_SALTY); putative cytoplasmic protein 281396..281941 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235912.1 CDS yaeJ NC_016856.1 281938 282360 D putative-tRNA hydrolase domain; hypothetical protein 281938..282360 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235913.1 CDS proS NC_016856.1 283167 284885 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(283167..284885) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235914.1 CDS yaeB NC_016856.1 284996 285703 R putative regulatory protein complement(284996..285703) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235915.1 CDS rcsF NC_016856.1 285700 286104 R similar to Escherichia coli regulator in colanic acid synthesis; interacts with RcsB (AAC73307.1); overexpression confers mucoid phenotype, increases capsule synthesis; outer membrane lipoprotein complement(285700..286104) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235916.1 CDS metQ NC_016856.1 286223 287038 R similar to Escherichia coli putative lipoprotein (AAC73308.1); DL-methionine transporter substrate-binding subunit complement(286223..287038) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235917.1 CDS yaeE NC_016856.1 287077 287730 R part of the MetNIQ methionine uptake system; DL-methionine transporter permease complement(287077..287730) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235918.1 CDS metN NC_016856.1 287723 288754 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(287723..288754) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235919.1 CDS yaeD NC_016856.1 288944 289510 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 288944..289510 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235920.1 CDS STM14_0291 NC_016856.1 289581 289703 R hypothetical protein complement(289581..289703) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235921.1 CDS STM14_0292 NC_016856.1 289616 289819 R hypothetical protein complement(289616..289819) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235922.1 CDS STM14_0296 NC_016856.1 291760 291876 D hypothetical protein 291760..291876 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235923.1 CDS dkgB NC_016856.1 295769 296572 D catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 295769..296572 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235924.1 CDS yafC NC_016856.1 296593 297507 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator complement(296593..297507) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235925.1 CDS STM14_0302 NC_016856.1 297612 298787 D similar to Escherichia coli putative transport protein (AAC74729.1); putatively for chloramphenicol; putative drug efflux protein 297612..298787 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235926.1 CDS yafD NC_016856.1 298940 299719 D hypothetical protein 298940..299719 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235927.1 CDS yafE NC_016856.1 299797 300567 D similar to Escherichia coli putative biotin synthesis protein (AAC73315.1); involved in menaquinone/biotin biosynthesis; putative methyltransferase 299797..300567 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235928.1 CDS dniR NC_016856.1 300623 301990 R catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D complement(300623..301990) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235929.1 CDS gloB NC_016856.1 302062 302817 R catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase complement(302062..302817) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235930.1 CDS yafS NC_016856.1 302852 303574 D putative SAM-dependent methyltransferase 302852..303574 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235931.1 CDS rnhA NC_016856.1 303571 304038 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(303571..304038) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235932.1 CDS dnaQ NC_016856.1 304102 304833 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 304102..304833 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235933.1 CDS STM14_0310 NC_016856.1 304859 304966 R hypothetical protein complement(304859..304966) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235934.1 CDS STM14_0312 NC_016856.1 305167 305274 D hypothetical protein 305167..305274 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235935.1 CDS STM14_0313 NC_016856.1 305365 306420 R putative cytoplasmic protein complement(305365..306420) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235936.1 CDS STM14_0314 NC_016856.1 306431 307426 R putative cytoplasmic protein complement(306431..307426) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235937.1 CDS STM14_0315 NC_016856.1 307423 309306 R putative cytoplasmic protein complement(307423..309306) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235938.1 CDS STM14_0316 NC_016856.1 309322 309816 R putative cytoplasmic protein complement(309322..309816) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235939.1 CDS STM14_0317 NC_016856.1 309813 310637 R putative cytoplasmic protein complement(309813..310637) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235940.1 CDS STM14_0318 NC_016856.1 310624 311526 R putative cytoplasmic protein complement(310624..311526) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235941.1 CDS STM14_0319 NC_016856.1 311894 314533 D similar to Escherichia coli ATP-binding component of serine protease (AAC73969.1); similar to Yersinia clpB; putative chaperone ATPase 311894..314533 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235942.1 CDS STM14_0320 NC_016856.1 314633 315175 D putative cytoplasmic protein 314633..315175 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235943.1 CDS STM14_0321 NC_016856.1 315199 316692 D putative cytoplasmic protein 315199..316692 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235944.1 CDS STM14_0322 NC_016856.1 316755 316865 D invasol SirA 316755..316865 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235945.1 CDS STM14_0323 NC_016856.1 316878 317324 D putative cytoplasmic protein 316878..317324 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235946.1 CDS STM14_0324 NC_016856.1 317578 318063 D putative cytoplasmic protein 317578..318063 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235947.1 CDS STM14_0325 NC_016856.1 318368 318853 D putative cytoplasmic protein 318368..318853 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235948.1 CDS STM14_0326 NC_016856.1 318838 319221 D hypothetical protein 318838..319221 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235949.1 CDS STM14_0327 NC_016856.1 319364 319849 D putative cytoplasmic protein 319364..319849 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235950.1 CDS STM14_0328 NC_016856.1 319916 320452 D putative outer membrane lipoprotein 319916..320452 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235951.1 CDS STM14_0329 NC_016856.1 320456 321799 D putative cytoplasmic protein 320456..321799 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235952.1 CDS STM14_0330 NC_016856.1 321796 323100 D similar to Escherichia coli putative outer membrane protein (AAC76576.1); OmpA family; hypothetical protein 321796..323100 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235953.1 CDS STM14_0331 NC_016856.1 323105 323878 D putative inner membrane protein 323105..323878 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235954.1 CDS STM14_0332 NC_016856.1 324081 324512 D putative Shiga-like toxin A subunit 324081..324512 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235955.1 CDS STM14_0333 NC_016856.1 324546 328415 D putative inner membrane protein 324546..328415 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235956.1 CDS STM14_0334 NC_016856.1 328415 329203 D putative cytoplasmic protein 328415..329203 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235957.1 CDS STM14_0335 NC_016856.1 329200 329616 D hypothetical protein 329200..329616 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235958.1 CDS STM14_0336 NC_016856.1 329640 330161 D putative cytoplasmic protein 329640..330161 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235959.1 CDS STM14_0337 NC_016856.1 330303 330512 D hypothetical protein 330303..330512 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235960.1 CDS STM14_0338 NC_016856.1 330558 332747 D putative cytoplasmic protein 330558..332747 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235961.1 CDS STM14_0339 NC_016856.1 332771 333217 D putative cytoplasmic protein 332771..333217 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235962.1 CDS STM14_0340 NC_016856.1 333236 337330 D similar to Escherichia coli RhsD protein in rhs element (AAC73599.1); similar to STM0292; putative RHS-like protein 333236..337330 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235963.1 CDS STM14_0341 NC_016856.1 337687 338520 D similar to Escherichia coli rhsE protein in rhs element (AAC74538.1); similar to C-terminus of STM0291; putative RHS-like protein 337687..338520 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235964.1 CDS STM14_0342 NC_016856.1 338514 338960 D putative cytoplasmic protein 338514..338960 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235965.1 CDS STM14_0343 NC_016856.1 339144 339275 D hypothetical protein 339144..339275 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235966.1 CDS STM14_0344 NC_016856.1 339345 339485 D hypothetical protein 339345..339485 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235967.1 CDS STM14_0345 NC_016856.1 339523 339960 D putative cytoplasmic protein 339523..339960 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235968.1 CDS STM14_0346 NC_016856.1 340013 340288 R hypothetical protein complement(340013..340288) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235969.1 CDS STM14_0348 NC_016856.1 340729 341037 D putative cytoplasmic protein 340729..341037 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235970.1 CDS STM14_0350 NC_016856.1 341440 341637 D putative transposase 341440..341637 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894085.1 CDS STM14_0351 NC_016856.1 341863 342144 D hypothetical protein 341863..342144 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235971.1 CDS safA NC_016856.1 342894 343406 D putative outer membrane protein 342894..343406 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235972.1 CDS safB NC_016856.1 343514 344227 D similar to Escherichia coli putative chaperone (AAC76177.1); putative fimbrial assembly chaperone 343514..344227 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235973.1 CDS safC NC_016856.1 344251 346761 D similar to Escherichia coli putative outer membrane protein; export function (AAC73634.1); putative fimbrial usher 344251..346761 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235974.1 CDS safD NC_016856.1 346783 347253 D putative fimbrial subunit 346783..347253 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235975.1 CDS ybeJ NC_016856.1 347659 348480 D putative xylanase/chitin deacetylase 347659..348480 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235976.1 CDS STM14_0357 NC_016856.1 348560 348820 D hypothetical protein 348560..348820 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235977.1 CDS sinR NC_016856.1 349295 350242 D SinR protein (SW:SINR_SALTY); transcriptional regulator 349295..350242 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235978.1 CDS STM14_0359 NC_016856.1 350359 350574 D putative cytoplasmic protein 350359..350574 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235979.1 CDS STM14_0360 NC_016856.1 350578 351297 R SapA-like protein complement(350578..351297) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235980.1 CDS STM14_0361 NC_016856.1 351322 351450 R hypothetical protein complement(351322..351450) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235981.1 CDS STM14_0362 NC_016856.1 351628 352035 R similar to Shigella VirG protein; VirG-like protein complement(351628..352035) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235982.1 CDS STM14_0363 NC_016856.1 352120 352227 R hypothetical protein complement(352120..352227) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235983.1 CDS yafV NC_016856.1 352406 353173 R similar to Escherichia coli putative amidase-type enzyme (AAC73323.1); hypothetical protein complement(352406..353173) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235984.1 CDS fadE NC_016856.1 353282 355726 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(353282..355726) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235985.1 CDS gmhA NC_016856.1 355966 356544 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 355966..356544 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235986.1 CDS yafJ NC_016856.1 356757 357524 D similar to Escherichia coli putative amidotransferase (AAC73327.1); putative glutamine amidotransferase 356757..357524 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235987.1 CDS yafK NC_016856.1 357495 358235 R hypothetical protein complement(357495..358235) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235988.1 CDS dinP NC_016856.1 358485 359540 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 358485..359540 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235989.1 CDS prfH NC_016856.1 360888 361502 D similar to release factor 1 and 2; peptide chain release factor-like protein 360888..361502 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235990.1 CDS pepD NC_016856.1 361658 363115 R similar to Escherichia coli aminoacyl-histidine dipeptidase; peptidase D (AAC73341.1); aminoacyl-histidine dipeptidase complement(361658..363115) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235991.1 CDS gpt NC_016856.1 363364 363822 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 363364..363822 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235992.1 CDS frsA NC_016856.1 363911 365155 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 363911..365155 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235993.1 CDS crl NC_016856.1 365213 365614 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 365213..365614 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235994.1 CDS phoE NC_016856.1 365665 366717 R outer membrane pore protein E precursor (SW:PHOE_SALTY); outer membrane phosphoporin protein E complement(365665..366717) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235995.1 CDS STM14_0377 NC_016856.1 366783 366935 R hypothetical protein complement(366783..366935) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235996.1 CDS proB NC_016856.1 367000 368103 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 367000..368103 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235997.1 CDS proA NC_016856.1 368115 369365 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 368115..369365 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235998.1 CDS STM14_0381 NC_016856.1 369882 370682 R similar to Escherichia coli IS3 putative transposase (AAC75150.1); contains a premature stop codon; IS3 transposase complement(369882..370682) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005235999.1 CDS STM14_0383 NC_016856.1 371424 371747 D putative cytoplasmic protein 371424..371747 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236000.2 CDS STM14_0384 NC_016856.1 372094 373326 D similar to Escherichia coli putative transport protein (AAC74668.1); putative permease 372094..373326 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236001.1 CDS STM14_0385 NC_016856.1 373458 374879 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 373458..374879 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236002.1 CDS STM14_0386 NC_016856.1 374881 375507 D similar to Escherichia coli 3-isopropylmalate isomerase subunit (AAC73182.1); dehydratase; subunit with LeuC; putative 3-isopropylmalate isomerase 374881..375507 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236003.1 CDS STM14_0387 NC_016856.1 375522 376400 D similar to Escherichia coli putative isomerase (AAC74264.1); FAA; putative fumarylacetoacetate hydrolase 375522..376400 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236004.1 CDS STM14_0388 NC_016856.1 376400 377314 D putative hydrolase/acyltransferase 376400..377314 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236005.1 CDS STM14_0389 NC_016856.1 377348 378313 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74869.1); LysR family; putative transcriptional regulator 377348..378313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236006.1 CDS STM14_0390 NC_016856.1 378258 378530 R putative cytoplasmic protein complement(378258..378530) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236007.1 CDS STM14_0391 NC_016856.1 379221 379619 D putative outer membrane protein 379221..379619 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236008.1 CDS stbE NC_016856.1 379666 380424 R similar to Escherichia coli periplasmic chaperone; required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone complement(379666..380424) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236009.1 CDS stbD NC_016856.1 380390 381715 R putative fimbrial usher complement(380390..381715) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236010.1 CDS stbC NC_016856.1 381720 384287 R similar to Escherichia coli outer membrane protein; export and assembly of type 1 fimbriae; interrupted (AAC77273.1); putative fimbrial usher complement(381720..384287) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236011.1 CDS stbB NC_016856.1 384271 385032 R similar to Escherichia coli probable pilin chaperone PapD (AAC73251.1); putative fimbrial chaperone complement(384271..385032) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236012.1 CDS stbA NC_016856.1 385094 385630 R similar to Escherichia coli major type 1 subunit fimbrin; pilin (AAC77270.1); putative fimbrial major subunit complement(385094..385630) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236013.1 CDS STM14_0397 NC_016856.1 385733 385843 R hypothetical protein complement(385733..385843) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236014.1 CDS STM14_0398 NC_016856.1 386264 387028 D putative inner membrane protein 386264..387028 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236015.1 CDS STM14_0399 NC_016856.1 387001 387501 D hypothetical protein 387001..387501 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236016.1 CDS STM14_0400 NC_016856.1 387801 389375 D putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein 387801..389375 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236017.1 CDS STM14_0401 NC_016856.1 389475 390218 D putative response regulator 389475..390218 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236018.1 CDS STM14_0402 NC_016856.1 390191 390679 D putative inner membrane protein 390191..390679 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236019.1 CDS STM14_0403 NC_016856.1 390802 390939 R hypothetical protein complement(390802..390939) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236020.1 CDS STM14_0404 NC_016856.1 391081 391605 D similar to ail and ompX; putative outer membrane protein 391081..391605 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236021.1 CDS STM14_0405 NC_016856.1 391749 392390 D putative response regulator 391749..392390 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236022.1 CDS STM14_0406 NC_016856.1 392401 392625 D putative inner membrane protein 392401..392625 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236023.1 CDS STM14_0407 NC_016856.1 392683 393042 D putative outer membrane lipoprotein 392683..393042 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236024.1 CDS STM14_0408 NC_016856.1 393112 394569 R similar to Escherichia coli putative resistance protein (AAC73673.1); outer membrane efflux-like protein complement(393112..394569) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236025.1 CDS STM14_0409 NC_016856.1 394586 397753 R similar to Escherichia coli integral transmembrane protein; acridine resistance (AAC76298.1); putative cation efflux system protein complement(394586..397753) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236026.1 CDS STM14_0410 NC_016856.1 397750 398955 R similar to Escherichia coli acridine efflux pump (AAC73565.1); putative cation efflux pump complement(397750..398955) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236027.1 CDS STM14_0411 NC_016856.1 399120 399233 D hypothetical protein 399120..399233 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236028.1 CDS STM14_0412 NC_016856.1 399253 401541 D similar to Escherichia coli putative ATPase (AAC73586.1); putative cation transport ATPase 399253..401541 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236029.1 CDS STM14_0413 NC_016856.1 401553 402017 D similar to Escherichia coli putative transcriptional regulator (AAC73589.1); putative transcriptional regulator 401553..402017 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236030.1 CDS STM14_0414 NC_016856.1 402095 402289 D putative copper chaperone 402095..402289 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236031.1 CDS STM14_0415 NC_016856.1 402243 402422 D putative metal-binding transport protein 402243..402422 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236032.1 CDS STM14_0416 NC_016856.1 402582 403835 D similar to Escherichia coli putative transport protein (AAC77235.1); putative inner membrane protein 402582..403835 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236033.1 CDS mod NC_016856.1 404024 405982 D type III restriction-modification system; methyltransferase (SW:T3MO_SALTY); restriction system; DNA methylase 404024..405982 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236034.1 CDS res NC_016856.1 405989 408964 D type III restriction-modification system enzyme (SW:T3RE_SALTY); DNA helicase; DNA restriction enzyme 405989..408964 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236035.1 CDS STM14_0419 NC_016856.1 409084 409218 D hypothetical protein 409084..409218 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236036.1 CDS STM14_0420 NC_016856.1 409118 409237 R hypothetical protein complement(409118..409237) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236037.1 CDS STM14_0421 NC_016856.1 409241 409342 D putative cytoplasmic protein 409241..409342 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236038.1 CDS STM14_0422 NC_016856.1 409459 410862 D similar to Escherichia coli probable third cytochrome oxidase, subunit I (AAC74063.1); cytochrome BD2 subunit I 409459..410862 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236039.1 CDS STM14_0423 NC_016856.1 410859 411869 D similar to Escherichia coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); cytochrome BD2 subunit II 410859..411869 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236040.1 CDS STM14_0424 NC_016856.1 411886 412110 D putative cytoplasmic protein 411886..412110 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236041.1 CDS STM14_0425 NC_016856.1 412206 413210 D putative XylS/AraC transcriptional activator (gi|3094022); AraC family; putative transcriptional regulator 412206..413210 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236042.1 CDS foxA NC_016856.1 413356 415464 D ferrioxamine B receptor precursor (SW:FOXA_SALTY); ferrioxamine receptor 413356..415464 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236043.1 CDS yahN NC_016856.1 415505 416137 R similar to Escherichia coli putative cytochrome subunit of dehydrogenase (AAC73431.1); putative transport protein complement(415505..416137) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236044.1 CDS yahO NC_016856.1 416369 416644 D hypothetical protein 416369..416644 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236045.1 CDS prpR NC_016856.1 416780 418405 R propionate catabolism operon regulatory protein (SW:PRPR_SALTY); EBP family; prp operon regulator complement(416780..418405) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236046.1 CDS STM14_0430 NC_016856.1 418467 418640 D hypothetical protein 418467..418640 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236047.1 CDS prpB NC_016856.1 418670 419557 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 418670..419557 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236048.1 CDS prpC NC_016856.1 419680 420849 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 419680..420849 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236049.1 CDS prpD NC_016856.1 420889 422340 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 420889..422340 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236050.1 CDS prpE NC_016856.1 422381 424267 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 422381..424267 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236051.1 CDS hemB NC_016856.1 424371 425345 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(424371..425345) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236052.1 CDS STM14_0436 NC_016856.1 425565 425684 D hypothetical protein 425565..425684 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236053.1 CDS STM14_0437 NC_016856.1 425675 425827 R hypothetical protein complement(425675..425827) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236054.1 CDS yaiU NC_016856.1 425858 428794 D similar to Escherichia coli putative flagellin structural protein (AAC73477.1); similar to 3rd module of ATP-binding components of transporters; flagellar protein 425858..428794 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236055.1 CDS yaiV NC_016856.1 428880 429503 D putative DNA-binding transcriptional regulator 428880..429503 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236056.1 CDS ampH NC_016856.1 429548 430678 R similar to Escherichia coli putative enzyme (AAC73479.1); beta-lactamase/D-alanine carboxypeptidase complement(429548..430678) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236057.1 CDS STM14_0441 NC_016856.1 430751 430909 R hypothetical protein complement(430751..430909) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236058.1 CDS STM14_0442 NC_016856.1 430925 431059 D hypothetical protein 430925..431059 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236059.1 CDS sbmA NC_016856.1 431052 432272 D in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 431052..432272 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236060.1 CDS yaiW NC_016856.1 432287 433381 D putative outer membrane lipoprotein 432287..433381 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236061.1 CDS yaiY NC_016856.1 433419 433727 R putative inner membrane protein complement(433419..433727) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236062.1 CDS STM14_0446 NC_016856.1 433714 433827 D hypothetical protein 433714..433827 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236063.1 CDS yaiZ NC_016856.1 433995 434210 D putative inner membrane protein 433995..434210 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236064.1 CDS ddl_1 NC_016856.1 434236 435330 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(434236..435330) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236065.1 CDS STM14_0449 NC_016856.1 435408 436121 D putative inner membrane protein 435408..436121 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236066.1 CDS STM14_0450 NC_016856.1 436290 437501 D similar to Escherichia coli putative transport protein (AAC74137.1); putative permease 436290..437501 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236067.1 CDS STM14_0451 NC_016856.1 437620 437742 D hypothetical protein 437620..437742 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236068.1 CDS yaiB NC_016856.1 437792 438058 D hypothetical protein 437792..438058 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236069.1 CDS STM14_0453 NC_016856.1 438082 438243 R hypothetical protein complement(438082..438243) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236070.1 CDS psiF NC_016856.1 438410 438730 D similar to Escherichia coli protein induced by phosphate starvation (AAC73487.1); hypothetical protein 438410..438730 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236071.1 CDS yaiC NC_016856.1 438822 439934 D catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; diguanylate cyclase AdrA 438822..439934 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236072.1 CDS proC NC_016856.1 439949 440758 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(439949..440758) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236073.1 CDS STM14_0457 NC_016856.1 440792 440941 D hypothetical protein 440792..440941 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236074.1 CDS yaiI NC_016856.1 440898 441353 D hypothetical protein 440898..441353 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236075.1 CDS aroL NC_016856.1 441538 442083 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 441538..442083 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236076.1 CDS yaiA NC_016856.1 442110 442301 D hypothetical protein 442110..442301 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236077.1 CDS aroM NC_016856.1 442552 443229 D similar to Escherichia coli protein of aro operon; regulated by aroR (AAC73493.1); hypothetical protein 442552..443229 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236078.1 CDS yaiE NC_016856.1 443300 443584 D hypothetical protein 443300..443584 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236079.1 CDS rdgC NC_016856.1 443622 444533 R Required for efficient pilin antigenic variation; recombination associated protein complement(443622..444533) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236080.1 CDS STM14_0464 NC_016856.1 444556 444687 R hypothetical protein complement(444556..444687) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236081.1 CDS yajF NC_016856.1 444659 445567 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 444659..445567 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236082.1 CDS araJ NC_016856.1 445589 446761 R member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; protein AraJ complement(445589..446761) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236083.1 CDS sbcC NC_016856.1 446934 450074 R with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease subunit SbcC complement(446934..450074) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236084.1 CDS sbcD NC_016856.1 450071 451273 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD complement(450071..451273) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236085.1 CDS STM14_0469 NC_016856.1 451315 451446 R hypothetical protein complement(451315..451446) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236086.1 CDS phoB NC_016856.1 451488 452177 D two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 451488..452177 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236087.1 CDS phoR NC_016856.1 452247 453542 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 452247..453542 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236088.1 CDS STM14_0472 NC_016856.1 453755 453904 R hypothetical protein complement(453755..453904) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236089.1 CDS brnQ NC_016856.1 453951 455270 D branched-chain amino acid transport system II carrier protein (SW:BRNQ_SALTY); LIVCS family; LIV-II; branched-chain amino acid transporter 453951..455270 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236090.1 CDS proY NC_016856.1 455345 456715 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; putative proline-specific permease 455345..456715 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236091.1 CDS malZ NC_016856.1 456877 458694 D similar to Escherichia coli maltodextrin glucosidase (AAC73506.1); maltodextrin glucosidase 456877..458694 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236092.1 CDS STM14_0476 NC_016856.1 458766 459368 R similar to Escherichia coli alkyl hydroperoxide reductase C22 subunit; detoxification of hydroperoxides (AAC73706.1); putative thiol-alkyl hydroperoxide reductase complement(458766..459368) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236093.1 CDS yajB NC_016856.1 459578 460159 R Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; acyl carrier protein phosphodiesterase complement(459578..460159) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236094.1 CDS queA NC_016856.1 460253 461317 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 460253..461317 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236095.1 CDS STM14_0479 NC_016856.1 461340 461450 D DNA metabolism protein 461340..461450 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236096.1 CDS tgt NC_016856.1 461514 462641 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 461514..462641 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236097.1 CDS yajC NC_016856.1 462664 462996 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 462664..462996 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236098.1 CDS secD NC_016856.1 463024 464871 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 463024..464871 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236099.1 CDS secF NC_016856.1 464882 465853 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 464882..465853 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236100.1 CDS STM14_0484 NC_016856.1 466001 466366 D hypothetical protein 466001..466366 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236101.1 CDS STM14_0485 NC_016856.1 466392 467084 D putative regulatory protein 466392..467084 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236102.1 CDS yajD NC_016856.1 467254 467601 D hypothetical 12.6 kDa protein in secF-tsx intergenic region (SW:YAJD_SALTY); hypothetical protein 467254..467601 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236103.1 CDS STM14_0487 NC_016856.1 467631 467846 D hypothetical protein 467631..467846 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236104.1 CDS tsx NC_016856.1 468230 469198 R nucleoside-specific channel-forming protein TSX precursor (SW:TSX_SALTY); receptor of phage T6 and colicin K; nucleoside channel complement(468230..469198) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236105.1 CDS yajI NC_016856.1 469393 469932 R hypothetical protein complement(469393..469932) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236106.1 CDS STM14_0491 NC_016856.1 469965 470111 D hypothetical protein 469965..470111 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236107.1 CDS ybaD NC_016856.1 470084 470533 D transcriptional regulator NrdR 470084..470533 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236108.1 CDS ribD NC_016856.1 470537 471640 D riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 470537..471640 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236109.1 CDS ribH NC_016856.1 471729 472199 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; riboflavin synthase subunit beta 471729..472199 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236110.1 CDS nusB NC_016856.1 472220 472639 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 472220..472639 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236111.1 CDS thiL NC_016856.1 472718 473695 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 472718..473695 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236112.1 CDS pgpA NC_016856.1 473673 474188 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 473673..474188 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236113.1 CDS STM14_0498 NC_016856.1 473976 474284 R hypothetical protein complement(473976..474284) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236114.1 CDS yajO NC_016856.1 474292 475266 R similar to Escherichia coli putative NAD(P)H-dependent xylose reductase (AAC73522.1); K+ channel protein; putative oxidoreductase complement(474292..475266) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236115.1 CDS dxs NC_016856.1 475323 477185 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(475323..477185) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236116.1 CDS ispA NC_016856.1 477209 478108 R similar to Escherichia coli geranyltranstransferase; farnesyldiphosphate synthase (AAC73524.1); geranyltranstransferase complement(477209..478108) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236117.1 CDS xseB NC_016856.1 478109 478351 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(478109..478351) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236118.1 CDS thiI NC_016856.1 478561 480009 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 478561..480009 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236119.1 CDS phnV NC_016856.1 480053 480850 R probable membrane component of 2-aminoethylphosphonate transporter PhnV (gi|11354255); 2-aminoethylphosphonate transporter complement(480053..480850) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236120.1 CDS phnU NC_016856.1 480853 481713 R probable membrane component of 2-aminoethylphosphonate transporter PhnU (gi|11354254); 2-aminoethylphosphonate transporter complement(480853..481713) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236121.1 CDS phnT NC_016856.1 481716 482825 R probable ATPase component of 2-aminoethylphosphonate transporter PhnT (gi|11354253); 2-aminoethylphosphonate transporter complement(481716..482825) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236122.1 CDS phnS NC_016856.1 482831 483844 R probable periplasmic binding-protein of the2-aminoethylphosphonate transporter phnS (gi|11354256); 2-aminoethylphosphonate transporter complement(482831..483844) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236123.1 CDS phnR NC_016856.1 484042 484761 R probable repressor protein of GntR family PhnR (gi|11354257); 2-aminoethylphosphonate transport protein complement(484042..484761) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236124.1 CDS STM14_0509 NC_016856.1 484792 484902 R hypothetical protein complement(484792..484902) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236125.1 CDS phnW NC_016856.1 484901 486004 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 484901..486004 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236126.1 CDS phnX NC_016856.1 486011 486823 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 486011..486823 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236127.1 CDS thiJ NC_016856.1 486920 487510 R 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme (SW:THIJ_SALTY); hypothetical protein complement(486920..487510) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236128.1 CDS apbA NC_016856.1 487473 488384 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(487473..488384) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236129.1 CDS yajQ NC_016856.1 488510 489001 D nucleotide-binding protein 488510..489001 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236130.1 CDS yajR NC_016856.1 489048 490412 R similar to Escherichia coli putative transport protein (AAC73530.1); MFS family; putative transport protein complement(489048..490412) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236131.1 CDS STM14_0517 NC_016856.1 490949 492460 D hypothetical protein 490949..492460 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236132.1 CDS STM14_0518 NC_016856.1 492472 493965 D TPR repeat; hypothetical protein 492472..493965 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236133.1 CDS cyoE NC_016856.1 494047 494937 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(494047..494937) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236134.1 CDS cyoD NC_016856.1 494949 495278 R similar to Escherichia coli cytochrome o ubiquinol oxidase subunit IV (AAC73532.1); cytochrome o ubiquinol oxidase subunit IV complement(494949..495278) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236135.1 CDS cyoC NC_016856.1 495278 495892 R similar to Escherichia coli cytochrome o ubiquinol oxidase subunit III (AAC73533.1); cytochrome o ubiquinol oxidase subunit III complement(495278..495892) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236136.1 CDS cyoB NC_016856.1 495882 497873 R similar to Escherichia coli cytochrome o ubiquinol oxidase subunit I (AAC73534.1); cytochrome o ubiquinol oxidase subunit I complement(495882..497873) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236137.1 CDS cyoA NC_016856.1 497884 498840 R similar to Escherichia coli cytochrome o ubiquinol oxidase subunit II (AAC73535.1); cytochrome o ubiquinol oxidase subunit II complement(497884..498840) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236138.1 CDS ampG NC_016856.1 499293 500768 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter complement(499293..500768) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236139.1 CDS yajG NC_016856.1 500812 501390 R similar to Escherichia coli putative polymerase/proteinase (AAC73537.1); hypothetical protein complement(500812..501390) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236140.1 CDS STM14_0526 NC_016856.1 501468 501653 D hypothetical protein 501468..501653 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236141.1 CDS bolA NC_016856.1 501694 502011 D positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 501694..502011 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236142.1 CDS STM14_0528 NC_016856.1 502053 502166 R hypothetical protein complement(502053..502166) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236143.1 CDS tig NC_016856.1 502358 503656 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 502358..503656 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236144.1 CDS clpP NC_016856.1 503903 504526 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 503903..504526 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236145.1 CDS STM14_0531 NC_016856.1 504670 504774 D hypothetical protein 504670..504774 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236146.1 CDS clpX NC_016856.1 504778 506049 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit 504778..506049 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236147.1 CDS lon NC_016856.1 506235 508589 D similar to Escherichia coli ATP-dependent protease La; heat shock K-protein (AAC73542.1); cleaves RcsA and SulA; heat shock K-protein; DNA binding activity; DNA-binding ATP-dependent protease La 506235..508589 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236148.1 CDS hupB NC_016856.1 508798 509070 D histone-like DNA-binding protein; transcriptional regulator HU subunit beta 508798..509070 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236149.1 CDS cypD NC_016856.1 509361 511232 D similar to Escherichia coli putative protease maturation protein (AAC73544.1); peptidyl-prolyl cis-trans isomerase 509361..511232 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236150.1 CDS STM14_0536 NC_016856.1 511028 511390 R hypothetical protein complement(511028..511390) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236151.1 CDS ybaV NC_016856.1 511382 511756 D similar to DNA-binding proteins; putative DNA uptake protein 511382..511756 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236152.1 CDS ybaW NC_016856.1 511860 512258 D putative esterase 511860..512258 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236153.1 CDS ybaX NC_016856.1 512364 513059 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC complement(512364..513059) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236154.1 CDS ybaE NC_016856.1 513124 514824 R putative ABC transporter periplasmic binding protein complement(513124..514824) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236155.1 CDS cof NC_016856.1 514925 515743 D putative hydrolase 514925..515743 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236156.1 CDS STM14_0542 NC_016856.1 515792 516847 R similar to Escherichia coli cysteine synthase B; O-acetylserine sulfhydrolase B (AAC75474.1); putative cysteine synthase/cystathionine beta-synthase complement(515792..516847) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236157.1 CDS ybaO NC_016856.1 516834 517418 D similar to Escherichia coli putative LRP-like transcriptional regulator (AAC73550.1); AsnC family; putative transcriptional regulator 516834..517418 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236158.1 CDS mdlA NC_016856.1 517459 519231 D similar to Escherichia coli ATP-binding component of a transport system (AAC73551.1); putative ABC superfamily transporter; putative multidrug transporter membrane\ATP-binding protein 517459..519231 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236159.1 CDS mdlB NC_016856.1 519224 521005 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC73552.1); putative ABC superfamily; putative multidrug transporter membrane\ATP-binding protein 519224..521005 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236160.1 CDS glnK NC_016856.1 521218 521556 D indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 521218..521556 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236161.1 CDS amtB NC_016856.1 521588 522874 D similar to Escherichia coli probable ammonium transporter (AAC73554.1); Amt family; ammonium transporter 521588..522874 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236162.1 CDS tesB NC_016856.1 522974 523834 R similar to Escherichia coli acyl-CoA thioesterase II (AAC73555.1); acyl-CoA thioesterase II complement(522974..523834) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236163.1 CDS ybaY NC_016856.1 524049 524618 D similar to Escherichia coli glycoprotein/polysaccharide metabolism (AAC73556.1); hypothetical protein 524049..524618 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236164.1 CDS ybaZ NC_016856.1 524651 525040 R putative methyltransferase complement(524651..525040) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236165.1 CDS ylaB NC_016856.1 525271 526821 R putative diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein complement(525271..526821) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236166.1 CDS rpmE2 NC_016856.1 527046 527306 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 527046..527306 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236167.1 CDS rpmJ_1 NC_016856.1 527312 527452 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 527312..527452 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236168.1 CDS ylaC NC_016856.1 527508 527978 R putative inner membrane protein complement(527508..527978) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236169.1 CDS maa NC_016856.1 528095 528646 R similar to Escherichia coli putative transferase (AAC73561.1); maltose O-acetyltransferase complement(528095..528646) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236170.1 CDS hha NC_016856.1 528825 529043 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein complement(528825..529043) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236171.1 CDS ybaJ NC_016856.1 529071 529445 R hypothetical protein complement(529071..529445) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236172.1 CDS acrB NC_016856.1 529941 533090 R similar to Escherichia coli acridine efflux pump (AAC73564.1); RND family; acridine efflux pump complement(529941..533090) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236173.1 CDS acrA NC_016856.1 533113 534306 R similar to Escherichia coli acridine efflux pump (AAC73565.1); acridine efflux pump complement(533113..534306) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236174.1 CDS acrR NC_016856.1 534448 535101 D regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 534448..535101 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236175.1 CDS STM14_0562 NC_016856.1 535085 535210 R hypothetical protein complement(535085..535210) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236176.1 CDS aefA NC_016856.1 535220 538582 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 535220..538582 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236177.1 CDS STM14_0564 NC_016856.1 538624 539559 R putative transposase complement(538624..539559) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236178.1 CDS ybaM NC_016856.1 539629 539796 R hypothetical protein complement(539629..539796) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236179.1 CDS priC NC_016856.1 539810 540325 R PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; primosomal replication protein N'' complement(539810..540325) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236180.1 CDS ybaN NC_016856.1 540406 540783 D similar to Escherichia coli putative gene 58 (AAC73570.1); hypothetical protein 540406..540783 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236181.1 CDS apt NC_016856.1 540936 541487 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 540936..541487 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236182.1 CDS dnaX NC_016856.1 541601 543529 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 541601..543529 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236183.1 CDS ybaB NC_016856.1 543575 543904 D hypothetical protein 543575..543904 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236184.1 CDS recR NC_016856.1 543904 544509 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 543904..544509 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236185.1 CDS htpG NC_016856.1 544596 546494 D molecular chaperone; heat shock protein 90 544596..546494 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236186.1 CDS STM14_0573 NC_016856.1 546597 546818 R hypothetical protein complement(546597..546818) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236187.1 CDS adk NC_016856.1 546735 547379 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 546735..547379 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236188.1 CDS STM14_0575 NC_016856.1 547392 547598 D hypothetical protein 547392..547598 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236189.1 CDS hemH NC_016856.1 547608 548570 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 547608..548570 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236190.2 CDS aes NC_016856.1 548567 549538 R similar to Escherichia coli putative lipase (AAC73578.1); acetyl esterase complement(548567..549538) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236191.1 CDS gsk NC_016856.1 549691 550995 D similar to Escherichia coli inosine-guanosine kinase (AAC73579.1); inosine-guanosine kinase 549691..550995 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236192.1 CDS ybaL NC_016856.1 551044 552720 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; putative cation:proton antiport protein complement(551044..552720) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236193.1 CDS STM14_0580 NC_016856.1 552798 552923 D hypothetical protein 552798..552923 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236194.1 CDS fsr NC_016856.1 552935 554155 R similar to Escherichia coli fosmidomycin resistance protein (AAC73581.1); MFS family; putative transport protein complement(552935..554155) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236195.1 CDS ushA NC_016856.1 554328 555980 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 554328..555980 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236196.1 CDS ybaK NC_016856.1 556097 556576 R protein YbaK (SW:YBAK_SALTY); hypothetical protein complement(556097..556576) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236197.1 CDS ybaP NC_016856.1 556778 557572 R similar to Escherichia coli putative ligase (AAC73584.1); putative cytoplasmic protein complement(556778..557572) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236198.1 CDS STM14_0585 NC_016856.1 557658 558485 R hypothetical protein complement(557658..558485) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236199.1 CDS copA NC_016856.1 558639 561140 R similar to Escherichia coli putative ATPase (AAC73586.1); copper exporting ATPase complement(558639..561140) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236200.1 CDS cueR NC_016856.1 561250 561666 D activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 561250..561666 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236201.1 CDS ybbJ NC_016856.1 561667 562119 R implicated in regulation of membrane protease activity; hypothetical protein complement(561667..562119) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236202.1 CDS ybbK NC_016856.1 562116 563033 R similar to Escherichia coli putative protease (AAC73591.1); putative inner membrane protein complement(562116..563033) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236203.1 CDS ybbL NC_016856.1 563180 563857 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC73592.1); putative ABC transporter ATP-binding protein YbbL 563180..563857 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236204.1 CDS ybbM NC_016856.1 563844 564623 D similar to Escherichia coli putative metal resistance protein (AAC73593.1); YbbM family; putative transport protein 563844..564623 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236205.1 CDS ybbN NC_016856.1 564709 565563 R similar to Escherichia coli putative thioredoxin-like protein (AAC73594.1); putative thioredoxin protein complement(564709..565563) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236206.1 CDS ybbO NC_016856.1 565623 566393 R similar to Escherichia coli putative oxidoreductase (AAC73595.1); short chain dehydrogenase complement(565623..566393) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236207.1 CDS tesA NC_016856.1 566548 567162 R similar to Escherichia coli acyl-CoA thioesterase I; also functions as protease I (AAC73596.1); lysophospholipaseL(I); multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 complement(566548..567162) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236208.1 CDS ybbA NC_016856.1 567133 567819 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC73597.1); putative ABC superfamily ATP-binding protein; putative ABC transporter ATP-binding protein YbbA 567133..567819 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236209.1 CDS ybbP NC_016856.1 567816 570230 D similar to Escherichia coli putative oxidoreductase (AAC73598.1); putative inner membrane protein 567816..570230 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236210.1 CDS STM14_0597 NC_016856.1 570227 570331 D hypothetical protein 570227..570331 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236211.1 CDS STM14_0598 NC_016856.1 570416 571549 D putative outer membrane protein 570416..571549 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236212.1 CDS STM14_0599 NC_016856.1 571546 571650 R hypothetical protein complement(571546..571650) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236213.1 CDS sfbA NC_016856.1 571806 572636 D similar to Escherichia coli putative lipoprotein (AAC73308.1); cell division protein; ABC transporter ATP-binding protein 571806..572636 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236214.1 CDS sfbB NC_016856.1 572673 573689 D similar to Escherichia coli ATP-binding component of a transporter (AAC73310.1); cell division protein; ABC transporter ATP-binding protein 572673..573689 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236215.1 CDS sfbC NC_016856.1 573682 574341 D similar to Escherichia coli putative transport system permease protein (AAC73309.1); binding-protein-dependent; putative ABC transporter permease 573682..574341 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236216.1 CDS ybbB NC_016856.1 574380 575474 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(574380..575474) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236217.1 CDS ybbS NC_016856.1 575544 576470 R activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS complement(575544..576470) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236218.1 CDS allA NC_016856.1 576697 577179 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 576697..577179 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236219.1 CDS allR NC_016856.1 577258 578076 D regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 577258..578076 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236220.1 CDS gcl NC_016856.1 578161 579942 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 578161..579942 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236221.1 CDS gip NC_016856.1 579955 580731 D similar to Escherichia coli glyoxylate-induced protein (AAC73610.1); hydroxypyruvate isomerase 579955..580731 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236222.1 CDS glxR NC_016856.1 580832 581710 D similar to Escherichia coli putative oxidoreductase (AAC73611.1); tartronic semialdehyde reductase 580832..581710 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236223.1 CDS STM14_0610 NC_016856.1 581776 583023 D similar to Escherichia coli putative transport protein; cryptic; joins former yjiZ and yjjL (AAC77312.1); putative permease 581776..583023 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236224.1 CDS ybbV NC_016856.1 583099 583353 D putative cytoplasmic protein 583099..583353 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236225.2 CDS allP NC_016856.1 583119 584573 D similar to Escherichia coli putative transport protein (AAC73613.1); NCS1 family; allantoin permease 583119..584573 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236226.1 CDS allB NC_016856.1 584652 586013 D Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 584652..586013 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236227.1 CDS ybbY NC_016856.1 586072 587370 D similar to Escherichia coli putative transport (AAC73615.1); putative purine permease YbbY 586072..587370 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236228.1 CDS glxK NC_016856.1 587393 588541 D glycerate kinase 587393..588541 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236229.1 CDS ylbA NC_016856.1 588621 589406 R hypothetical protein complement(588621..589406) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236230.1 CDS allC NC_016856.1 589417 590652 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(589417..590652) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236231.1 CDS allD NC_016856.1 590674 591723 R similar to Escherichia coli putative malate dehydrogenase (AAC73619.1); ureidoglycolate dehydrogenase complement(590674..591723) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236232.1 CDS fdrA NC_016856.1 592054 593718 D multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 592054..593718 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236233.1 CDS ylbE NC_016856.1 593728 594987 D putative cytoplasmic protein 593728..594987 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236234.1 CDS ylbF NC_016856.1 594999 595808 D similar to Escherichia coli putative carboxylase (AAC73622.1); putative cytoplasmic protein 594999..595808 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236235.1 CDS arcC NC_016856.1 595812 596705 D forms a homodimer; may be used to synthesize carbomyl phosphate from ATP and carbamate; carbamate kinase 595812..596705 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236236.1 CDS purK NC_016856.1 596746 597813 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(596746..597813) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236237.1 CDS purE NC_016856.1 597810 598319 R Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(597810..598319) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236238.1 CDS lpxH NC_016856.1 598437 599159 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(598437..599159) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236239.1 CDS ppiB NC_016856.1 599162 599656 R similar to Escherichia coli peptidyl-prolyl cis-trans isomerase B; rotamase B (AAC73627.1); peptidyl-prolyl cis-trans isomerase B complement(599162..599656) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236240.1 CDS cysS NC_016856.1 599829 601214 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 599829..601214 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236241.1 CDS STM14_0628 NC_016856.1 601258 602082 R putative outer membrane protein complement(601258..602082) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236242.1 CDS STM14_0629 NC_016856.1 602079 602516 R putative inner membrane protein complement(602079..602516) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236243.1 CDS ybcI NC_016856.1 602509 603054 R putative membrane-bound metal-dependent hydrolase complement(602509..603054) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236244.1 CDS ybcJ NC_016856.1 603182 603394 R hypothetical protein complement(603182..603394) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236245.1 CDS folD NC_016856.1 603396 604262 R similar to Escherichia coli 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase (AAC73631.1); bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(603396..604262) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236246.1 CDS STM14_0633 NC_016856.1 604316 604444 R hypothetical protein complement(604316..604444) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236247.1 CDS STM14_0634 NC_016856.1 604400 604555 D hypothetical protein 604400..604555 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236248.1 CDS fimA NC_016856.1 604824 605366 D type-1 fimbrial protein; A chain precursor; type-1A pilin (SW:FM1A_SALTY); major type 1 subunit; fimbrin 604824..605366 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236249.1 CDS fimI NC_016856.1 605442 605975 D fimbrin-like protein FimI (SW:FIMI_SALTY); fimbrial protein 605442..605975 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236250.1 CDS fimC NC_016856.1 606019 606711 D chaperone protein FimC precursor (SW:FIMC_SALTY); required for type 1 fimbriae; periplasmic chaperone 606019..606711 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236251.1 CDS fimD NC_016856.1 606742 609354 D outer membrane usher protein FimD precursor (SW:FIMD_SALTY); outer membrane usher protein 606742..609354 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236252.1 CDS fimH NC_016856.1 609369 610376 D FIMH protein precursor (SW:FIMH_SALTY); minor fimbrial subunit 609369..610376 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236253.1 CDS fimF NC_016856.1 610386 610904 D fimbrial-like protein FimF precursor (SW:FIMF_SALTY); putative fimbrial protein 610386..610904 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236254.1 CDS fimZ NC_016856.1 610950 611582 R activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ complement(610950..611582) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236255.1 CDS fimY NC_016856.1 612186 612908 R fimbriae Y protein (SW:FIMY_SALTY); putative regulatory protein complement(612186..612908) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236256.1 CDS STM14_0643 NC_016856.1 612927 613238 R putative diguanylate cyclase/phosphodiesterase domain 0; hypothetical protein complement(612927..613238) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236257.1 CDS fimW NC_016856.1 613400 613996 R fimbriae W protein (SW:FIMW_SALTY); putative fimbrial protein complement(613400..613996) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236258.1 CDS STM14_0645 NC_016856.1 614019 614189 D hypothetical protein 614019..614189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236259.1 CDS STM14_0647 NC_016856.1 614287 614475 R similar to Escherichia coli prophage DLP12 integrase (AAC73638.1); integrase complement(614287..614475) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236260.1 CDS STM14_0649 NC_016856.1 615283 615441 D hypothetical protein 615283..615441 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236261.1 CDS STM14_0650 NC_016856.1 615498 617150 R putative inner membrane protein complement(615498..617150) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236262.1 CDS yfdH NC_016856.1 617131 618057 R similar to Escherichia coli putative glycan biosynthesis enzyme (AAC75410.1); putative glycosyltransferase complement(617131..618057) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236263.1 CDS gtrA NC_016856.1 618054 618416 R putative glycosyl translocase complement(618054..618416) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236264.1 CDS STM14_0655 NC_016856.1 619284 619613 R similar to Escherichia coli putative 2-component sensor protein (AAC73671.1); sensor kinase complement(619284..619613) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894086.1 CDS STM14_05870 NC_016856.1 619737 619901 D hypothetical protein 619737..619901 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236265.1 CDS STM14_0657 NC_016856.1 619952 620806 R similar to Escherichia coli putative AraC-type regulatory protein (AAC73408.1); AraC/XylS family; putative transcriptional regulator complement(619952..620806) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236266.1 CDS STM14_0658 NC_016856.1 621022 622347 D Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 621022..622347 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236267.1 CDS STM14_0659 NC_016856.1 622266 622520 R hypothetical protein complement(622266..622520) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236268.1 CDS STM14_0660 NC_016856.1 622504 622740 D hypothetical protein 622504..622740 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236269.1 CDS STM14_0661 NC_016856.1 622753 623313 D putative inner membrane protein 622753..623313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236270.1 CDS STM14_0662 NC_016856.1 623392 624567 R putative DNA repair ATPase complement(623392..624567) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236271.1 CDS pheP NC_016856.1 624893 626287 D similar to Escherichia coli phenylalanine-specific transport system (AAC73677.1); APC family; phenylalanine transporter 624893..626287 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236272.1 CDS ybdG NC_016856.1 626329 627576 R similar to Escherichia coli putative transport (AAC73678.1); hypothetical protein complement(626329..627576) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236273.1 CDS STM14_0665 NC_016856.1 627603 627788 D hypothetical protein 627603..627788 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236274.1 CDS apeE NC_016856.1 627887 629857 D outer membrane esterase (gi|2896133); N-acetyl phenylalanine beta-naphthyl esterase; outer membrane esterase 627887..629857 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236275.1 CDS STM14_0667 NC_016856.1 630024 632753 D putative inner membrane protein 630024..632753 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236276.1 CDS STM14_0668 NC_016856.1 632881 633867 R similar to Escherichia coli putative transport protein (AAC76396.1); putative phosphosugar isomerase complement(632881..633867) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236277.1 CDS STM14_0669 NC_016856.1 633934 634977 R similar to Escherichia coli L-glutamine/D-fructose-6-phosphate aminotransferase (AAC76752.1); putative inner membrane protein complement(633934..634977) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236278.1 CDS STM14_0670 NC_016856.1 635010 635864 R similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative PTS system mannose-specific enzyme IID complement(635010..635864) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236279.1 CDS STM14_0671 NC_016856.1 635867 636610 R similar to Escherichia coli PTS enzyme IIC; mannose-specific (AAC74888.1); putative inner membrane protein complement(635867..636610) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236280.1 CDS STM14_0672 NC_016856.1 636625 637095 R similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS system mannose-specific enzyme IIAB complement(636625..637095) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236281.1 CDS STM14_0673 NC_016856.1 637073 637522 R similar to Escherichia coli PTS enzyme IIAB; mannose-specific (AAC74887.1); putative PTS system mannose-specific enzyme IIAB complement(637073..637522) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236282.1 CDS nfnB NC_016856.1 637722 638375 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase complement(637722..638375) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236283.1 CDS ybdF NC_016856.1 638472 638840 R hypothetical protein complement(638472..638840) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236284.1 CDS STM14_0676 NC_016856.1 638840 639421 R putative regulatory protein complement(638840..639421) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236285.1 CDS STM14_0677 NC_016856.1 639577 639684 D hypothetical protein 639577..639684 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236286.1 CDS STM14_0678 NC_016856.1 639710 640051 D resistance against oxidative stress protein A (gi|9885772); putative regulatory protein 639710..640051 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236287.1 CDS ybdJ NC_016856.1 640057 640305 R putative inner membrane protein complement(640057..640305) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236288.1 CDS ybdK NC_016856.1 640372 641490 R ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase complement(640372..641490) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236289.1 CDS entD NC_016856.1 641502 642206 R similar to Escherichia coli enterochelin synthetase component D (AAC73684.1); phoshpantetheinyltransferase; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex complement(641502..642206) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236290.1 CDS fepA NC_016856.1 642252 644507 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(642252..644507) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236291.1 CDS STM14_0683 NC_016856.1 644504 644635 R hypothetical protein complement(644504..644635) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236292.1 CDS fes NC_016856.1 644696 645910 D similar to Escherichia coli enterochelin esterase (AAC73686.1); enterobactin/ferric enterobactin esterase 644696..645910 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236293.1 CDS ybdZ NC_016856.1 645941 646159 D putative cytoplasmic protein 645941..646159 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236294.1 CDS entF NC_016856.1 646156 650040 D with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 646156..650040 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236295.1 CDS fepE NC_016856.1 650290 651426 D part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 650290..651426 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236296.1 CDS fepC NC_016856.1 651479 652273 R with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein complement(651479..652273) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236297.1 CDS fepG NC_016856.1 652270 653259 R with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease complement(652270..653259) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236298.1 CDS fepD NC_016856.1 653259 654266 R with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein complement(653259..654266) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236299.1 CDS ybdA NC_016856.1 654377 655621 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 654377..655621 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236300.1 CDS fepB NC_016856.1 655684 656640 R with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein complement(655684..656640) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236301.1 CDS entC NC_016856.1 656949 658124 D synthesizes isochorismate acid from chorismate; isochorismate synthase 656949..658124 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236302.1 CDS entE NC_016856.1 658134 659744 D bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 658134..659744 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236303.1 CDS entB NC_016856.1 659758 660615 D similar to Escherichia coli 2,3-dihydro-2,3-dihydroxybenzoate synthetase; isochroismatase (AAC73696.1); 2,3-dihydro-2,3-dihydroxybenzoate synthetase 659758..660615 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236304.1 CDS entA NC_016856.1 660615 661370 D catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 660615..661370 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236305.1 CDS ybdB NC_016856.1 661373 661786 D possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 661373..661786 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236306.1 CDS STM14_0698 NC_016856.1 661861 661971 D hypothetical protein 661861..661971 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236307.1 CDS cstA NC_016856.1 661968 664073 D similar to Escherichia coli carbon starvation protein (AAC73699.1); carbon starvation protein 661968..664073 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236308.1 CDS ybdD NC_016856.1 664137 664334 D putative cytoplasmic protein 664137..664334 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236309.1 CDS ybdH NC_016856.1 664370 665458 R member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein complement(664370..665458) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236310.1 CDS ybdL NC_016856.1 665585 666745 D catalyzes the transfer of an amino moiety; putative aminotransferase 665585..666745 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236311.1 CDS ybdM NC_016856.1 666746 667363 R putative transcriptional regulator complement(666746..667363) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236312.1 CDS ybdN NC_016856.1 667336 668571 R PAPS reductase/FAD synthetase; putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase complement(667336..668571) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236313.1 CDS ybdO NC_016856.1 668737 669639 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73704.1); LysR family; putative transcriptional regulator complement(668737..669639) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236314.1 CDS dsbG NC_016856.1 669956 670702 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(669956..670702) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236315.1 CDS ahpC NC_016856.1 671143 671706 D with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C 671143..671706 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236316.1 CDS ahpF NC_016856.1 671831 673513 D alkyl hydroperoxide reductase subunit F (SW:AHPF_SALTY); detoxification of hydroperoxides; alkyl hydroperoxide reductase F52a subunit 671831..673513 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236317.1 CDS STM14_0709 NC_016856.1 673845 674405 D similar to Escherichia coli putative oxidoreductase component (AAC74663.1); putative anaerobic dehydrogenase component 673845..674405 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236318.1 CDS STM14_0710 NC_016856.1 674398 676677 D similar to Escherichia coli putative oxidoreductase; major subunit (AAC74659.1); putative oxidoreductase protein 674398..676677 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236319.1 CDS STM14_0711 NC_016856.1 676674 677033 D molybdopterin-containing oxidoreductase iron-sulfur subunit 676674..677033 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236320.1 CDS STM14_0712 NC_016856.1 677033 677800 D similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative hydrogenase protein 677033..677800 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236321.1 CDS ybdQ NC_016856.1 677868 678296 R similar to UspA and related nucleotide-binding protein; putative universal stress protein complement(677868..678296) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236322.1 CDS STM14_0714 NC_016856.1 678228 678434 D hypothetical protein 678228..678434 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236323.1 CDS STM14_0715 NC_016856.1 678399 678539 R hypothetical protein complement(678399..678539) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236324.1 CDS ybdR NC_016856.1 678519 679757 D similar to Escherichia coli putative oxidoreductase (AAC73709.1); putative dehydrogenase 678519..679757 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236325.1 CDS rnk NC_016856.1 679840 680250 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator complement(679840..680250) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236326.1 CDS rna NC_016856.1 680485 681291 R similar to Escherichia coli RNase I; cleaves phosphodiester bond between any two nucleotides (AAC73712.1); ribonuclease I complement(680485..681291) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236327.1 CDS citT NC_016856.1 681401 682864 R similar to Escherichia coli putative membrane protein (AAC73713.1); DASS family; citrate/succinate transport antiport protein complement(681401..682864) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236328.1 CDS citG NC_016856.1 682902 683798 R catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase complement(682902..683798) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236329.1 CDS citX NC_016856.1 683770 684321 R 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase complement(683770..684321) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236330.1 CDS citF NC_016856.1 684325 685854 R similar to Escherichia coli citrate lyase alpha chain (AAC73716.1); citrate lyase subunit alpha/citrate-ACP transferase complement(684325..685854) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236331.1 CDS citE NC_016856.1 685864 686772 R similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); citrate lyase subunit beta complement(685864..686772) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236332.1 CDS citD NC_016856.1 686769 687065 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(686769..687065) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236333.1 CDS citC NC_016856.1 687062 688138 R similar to Escherichia coli citrate lyase synthetase; citrate (pro-3S)-lyase ligase (AAC73719.1); citrate lyase synthetase complement(687062..688138) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236334.1 CDS STM14_0726 NC_016856.1 688331 688513 D hypothetical protein 688331..688513 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236335.1 CDS dpiB NC_016856.1 688523 690184 D similar to Escherichia coli putative sensor-type protein (AAC73720.1); in two-component regulatory system with DpiA; regulation of cit operon and plasmid inheritance genes; sensory histidine kinase 688523..690184 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236336.1 CDS dpiA NC_016856.1 690153 690833 D regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 690153..690833 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236337.1 CDS dcuC NC_016856.1 690887 692272 R responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC complement(690887..692272) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236338.1 CDS STM14_0730 NC_016856.1 692333 692443 D hypothetical protein 692333..692443 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236339.1 CDS pagP NC_016856.1 692651 693223 D PagP (gi|3789781); palmitoyl transferase for Lipid A 692651..693223 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236340.1 CDS cspE NC_016856.1 693411 693620 D member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 693411..693620 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236341.1 CDS ccrB NC_016856.1 693678 694061 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(693678..694061) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236342.1 CDS ybeM NC_016856.1 694152 694940 D similar to Escherichia coli putative amidase (AAC73727.1); putative hydrolase 694152..694940 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236343.1 CDS STM14_0735 NC_016856.1 694969 695076 D hypothetical protein 694969..695076 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236344.1 CDS tatE NC_016856.1 695069 695272 D TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein E 695069..695272 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236345.1 CDS lipA NC_016856.1 695358 696323 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(695358..696323) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236346.1 CDS STM14_0738 NC_016856.1 696364 696498 R hypothetical protein complement(696364..696498) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236347.1 CDS ybeF NC_016856.1 696529 697482 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73730.1); LysR family; putative DNA-binding transcriptional regulator complement(696529..697482) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236348.1 CDS STM14_0740 NC_016856.1 697584 697727 R hypothetical protein complement(697584..697727) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236349.1 CDS lipB NC_016856.1 697784 698425 R lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase complement(697784..698425) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236350.1 CDS STM14_0742 NC_016856.1 698354 698719 D hypothetical protein 698354..698719 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236351.1 CDS ybeD NC_016856.1 698525 698788 R hypothetical protein complement(698525..698788) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236352.1 CDS dacA NC_016856.1 698897 700108 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase complement(698897..700108) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236353.1 CDS STM14_0745 NC_016856.1 700128 700277 D hypothetical protein 700128..700277 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236354.1 CDS rlpA NC_016856.1 700248 701393 R similar to Escherichia coli minor lipoprotein (AAC73734.1); rare lipoprotein A complement(700248..701393) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236355.1 CDS mrdB NC_016856.1 701404 702516 R similar to Escherichia coli rod shape-determining membrane protein; sensitivity to radiation and drugs (AAC73735.1); cell elongation in exponential phase; cell wall shape-determining protein complement(701404..702516) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236356.1 CDS mrdA NC_016856.1 702519 704420 R similar to Escherichia coli cell elongation e phase protein; peptidoglycan synthetase; penicillin-binding protein 2 (AAC73736.1); penicillin-binding protein 2 complement(702519..704420) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236357.1 CDS ybeA NC_016856.1 704451 704918 R enzyme from Escherichia coli has not been shown to exhibit methyltransferase activity; crystal structure shows homodimer; SPOUT methyltransferase superfamily protein complement(704451..704918) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236358.1 CDS ybeB NC_016856.1 704922 705239 R similar to putative ACR plant Iojap protein; hypothetical protein complement(704922..705239) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236359.1 CDS cobC NC_016856.1 705568 706176 R alpha-ribazole-5'-phosphate phosphatase (SW:COBC_SALTY); cobalamin synthesis; alpha ribazole-5'-P phosphatase complement(705568..706176) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236360.1 CDS cobD NC_016856.1 706273 707367 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 706273..707367 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236361.1 CDS nadD NC_016856.1 707342 707983 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(707342..707983) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236362.1 CDS holA NC_016856.1 707985 709016 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(707985..709016) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236363.1 CDS rlpB NC_016856.1 709016 709606 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RplB complement(709016..709606) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236364.2 CDS STM14_0756 NC_016856.1 709621 712203 R hypothetical protein complement(709621..712203) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236365.1 CDS STM14_0757 NC_016856.1 712491 712781 D similar to Escherichia coli altronate hydrolase N-terminus (AAC76126.1); putative hydrolase 712491..712781 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236366.1 CDS STM14_0758 NC_016856.1 712798 713970 D similar to Escherichia coli putative hydrolase C-terminus (AAC76162.1); putative hydrolase 712798..713970 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236367.1 CDS STM14_0759 NC_016856.1 714020 714973 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 714020..714973 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236368.1 CDS STM14_0760 NC_016856.1 715041 716969 D similar to Escherichia coli response regulator of ato; ornithine decarboxylase antizyme; sensor ATOS (AAC75280.1); putative sigma-54 dependent transcriptional regulator 715041..716969 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236369.1 CDS ybeL NC_016856.1 717062 717535 D similar to Escherichia coli putative alpha helical protein (AAC73744.1); hypothetical protein 717062..717535 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236370.1 CDS ybeQ NC_016856.1 717574 718569 R TPR repeat; hypothetical protein complement(717574..718569) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236371.1 CDS ybeR NC_016856.1 718694 719401 D putative cytoplasmic protein 718694..719401 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236372.1 CDS ybeS NC_016856.1 719398 720831 D similar to Escherichia coli putative enzyme of polynucleotide modification (AAC73747.1); DnaJ family; putative molecular chaperone 719398..720831 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236373.1 CDS ybeV NC_016856.1 721536 723008 D DnaJ family; putative molecular chaperone 721536..723008 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236374.1 CDS hscC NC_016856.1 723030 724709 R similar to Escherichia coli putative DnaK protein (AAC73751.1); similar to Hsp70 in Hsc66 subfamily; putative heatshock protein complement(723030..724709) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236375.1 CDS STM14_0768 NC_016856.1 724785 726023 R putative cytoplasmic protein complement(724785..726023) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236376.1 CDS rihA NC_016856.1 726055 726990 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 complement(726055..726990) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236377.1 CDS gltL NC_016856.1 727107 727832 R similar to Escherichia coli ATP-binding protein of glutamate/aspartate transport system (AAC73753.1); ABC superfamily ATP-binding protein; glutamate/aspartate transporter complement(727107..727832) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236378.1 CDS gltK NC_016856.1 727832 728506 R similar to Escherichia coli glutamate/aspartate transport system permease (AAC73754.1); ABC superfamily membrane protein; glutamate/aspartate transporter complement(727832..728506) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236379.1 CDS gltJ NC_016856.1 728506 729246 R similar to Escherichia coli glutamate/aspartate transport system permease (AAC73755.1); ABC superfamily membrane protein; glutamate/aspartate transporter complement(728506..729246) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236380.1 CDS gltI NC_016856.1 729406 730332 R similar to Escherichia coli putative periplasmic binding transport protein (AAC73756.1); ABC superfamily binding protein; glutamate and aspartate transporter subunit complement(729406..730332) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236381.1 CDS STM14_0774 NC_016856.1 730309 730596 D hypothetical protein 730309..730596 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236382.1 CDS lnt NC_016856.1 730669 732207 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(730669..732207) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236383.1 CDS ybeX NC_016856.1 732227 733105 R similar to Escherichia coli putative transport protein (AAC73759.1); contains putative CBS domain; putative transport protein complement(732227..733105) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236384.1 CDS STM14_0777 NC_016856.1 733102 733251 R hypothetical protein complement(733102..733251) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236385.1 CDS ybeY NC_016856.1 733263 733736 R hypothetical protein in cutE-corC intergenic region (SW:YBEY_SALTY); putative metalloprotease complement(733263..733736) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236386.1 CDS phoL NC_016856.1 733733 734818 R similar to Escherichia coli putative ATP-binding protein in pho regulon (AAC73761.1); putative phosphate starvation-inducible protein complement(733733..734818) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236387.1 CDS STM14_0780 NC_016856.1 734838 734957 R hypothetical protein complement(734838..734957) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236388.1 CDS miaB NC_016856.1 734984 736408 R methylthiolation of isopentenylated A37 derivatives in rRNA; rRNA modification protein complement(734984..736408) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236389.1 CDS ubiF NC_016856.1 736552 737727 D catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 736552..737727 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236390.1 CDS STM14_0783 NC_016856.1 737794 738369 R putative inner membrane protein complement(737794..738369) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236391.1 CDS STM14_0791 NC_016856.1 739310 739477 D hypothetical protein 739310..739477 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236392.1 CDS asnB NC_016856.1 739436 741100 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(739436..741100) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236393.1 CDS nagD NC_016856.1 741390 742142 R similar to Escherichia coli N-acetylglucosamine metabolism (AAC73769.1); UMP phosphatase complement(741390..742142) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236394.1 CDS nagC NC_016856.1 742189 743409 R similar to Escherichia coli transcriptional repressor of nag; N-acetylglucosamine operon (AAC73770.1); NagC/XylR family; N-acetylglucosamine operon transcriptional repressor complement(742189..743409) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236395.1 CDS nagA NC_016856.1 743414 744568 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(743414..744568) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236396.1 CDS nagB NC_016856.1 744628 745428 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(744628..745428) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236397.1 CDS STM14_0797 NC_016856.1 745470 745595 R hypothetical protein complement(745470..745595) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236398.1 CDS nagE NC_016856.1 745755 747707 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; N-acetyl glucosamine specific PTS system components IIABC 745755..747707 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236399.1 CDS glnS NC_016856.1 747918 749585 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 747918..749585 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236400.1 CDS STM14_0800 NC_016856.1 749621 749734 D hypothetical protein 749621..749734 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236401.1 CDS STM14_0801 NC_016856.1 749864 750154 D hypothetical protein 749864..750154 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236402.1 CDS ybfM NC_016856.1 750031 751437 D putative outer membrane protein 750031..751437 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236403.1 CDS ybfN NC_016856.1 751487 751819 D putative lipoprotein 751487..751819 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236404.1 CDS citA NC_016856.1 751868 753172 R citrate-proton symporter (citrate transporter). (SW:CIT1_SALTY); citrate-proton symporter complement(751868..753172) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236405.1 CDS citB NC_016856.1 753223 754362 R citrate utilization protein B (SW:CIT2_SALTY); citrate utilization protein b complement(753223..754362) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236406.1 CDS STM14_0806 NC_016856.1 754349 755752 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(754349..755752) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236407.1 CDS STM14_0807 NC_016856.1 755850 756776 R similar to Escherichia coli nitrogen assimilation control protein (AAC75050.1); LysR family; putative transcriptional regulator complement(755850..756776) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236408.1 CDS fur NC_016856.1 756891 757343 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(756891..757343) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236409.1 CDS STM14_0809 NC_016856.1 757442 757591 D hypothetical protein 757442..757591 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236410.1 CDS fldA NC_016856.1 757625 758254 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(757625..758254) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236411.1 CDS ybfE NC_016856.1 758318 758599 R LexA-regulated; LexA regulated protein complement(758318..758599) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236412.1 CDS STM14_0812 NC_016856.1 758607 758720 D hypothetical protein 758607..758720 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236413.1 CDS ybfF NC_016856.1 758733 759503 R hypothetical protein complement(758733..759503) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236414.1 CDS seqA NC_016856.1 759655 760230 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 759655..760230 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236415.1 CDS pgm NC_016856.1 760255 761895 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 760255..761895 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236416.1 CDS STM14_0816 NC_016856.1 762010 762495 R putative cytoplasmic protein complement(762010..762495) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236417.1 CDS potE NC_016856.1 762560 763879 R catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter complement(762560..763879) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236418.1 CDS speF NC_016856.1 763876 766074 R similar to Escherichia coli ornithine decarboxylase isozyme; inducible (AAC73787.1); ornithine decarboxylase complement(763876..766074) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236419.1 CDS STM14_0819 NC_016856.1 766193 766318 R hypothetical protein complement(766193..766318) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236420.1 CDS STM14_0820 NC_016856.1 766472 766585 D hypothetical protein 766472..766585 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236421.1 CDS kdpE NC_016856.1 766836 767513 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE complement(766836..767513) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236422.1 CDS kdpD NC_016856.1 767510 770194 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD complement(767510..770194) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236423.1 CDS kdpC NC_016856.1 770191 770775 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(770191..770775) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236424.1 CDS kdpB NC_016856.1 770784 772832 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(770784..772832) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236425.1 CDS kdpA NC_016856.1 772853 774532 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(772853..774532) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236426.1 CDS STM14_0826 NC_016856.1 774532 774729 R K+-transporting ATPase subunit F complement(774532..774729) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236427.1 CDS ybfA NC_016856.1 774958 775164 D hypothetical protein 774958..775164 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236428.1 CDS phrB NC_016856.1 775275 776696 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 775275..776696 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236429.2 CDS ybgH NC_016856.1 776735 778216 R similar to Escherichia coli putative transport protein (AAC73803.1); POT family transport protein complement(776735..778216) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236430.1 CDS ybgI NC_016856.1 778545 779288 D putative hydrolase-oxidase 778545..779288 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236431.1 CDS ybgJ NC_016856.1 779304 779960 D similar to Escherichia coli putative carboxylase (AAC73805.1); putative carboxylase 779304..779960 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236432.1 CDS ybgK NC_016856.1 779954 780886 D similar to Escherichia coli putative carboxylase (AAC73806.1); putative carboxylase 779954..780886 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236433.1 CDS ybgL NC_016856.1 780876 781610 D similar to Escherichia coli putative lactam utilization protein (AAC73807.1); hypothetical protein 780876..781610 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236434.1 CDS STM14_0834 NC_016856.1 781934 782065 D putative cytoplasmic protein 781934..782065 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236435.1 CDS STM14_0835 NC_016856.1 782125 782691 D similar to Escherichia coli recombinase involved in phase variation; regulator for fimA (AAC77268.1); putative phage integrase 782125..782691 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236436.1 CDS STM14_0836 NC_016856.1 783151 783486 D putative inner membrane protein 783151..783486 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236437.1 CDS STM14_0837 NC_016856.1 783488 784228 D putative cytoplasmic protein 783488..784228 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236438.1 CDS STM14_0838 NC_016856.1 784514 785665 D similar to Escherichia coli UDP-galactopyranose mutase (AAC75097.1); putative UDP-galactopyranose mutase 784514..785665 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236439.1 CDS STM14_0839 NC_016856.1 785662 786558 D putative glycosyl transferase 785662..786558 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236440.1 CDS STM14_0840 NC_016856.1 786571 787704 D similar to Escherichia coli putative colanic acid biosynthesis glycosyl transferase (AAC75105.1); putative glycosyl transferase 786571..787704 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236441.1 CDS STM14_0841 NC_016856.1 787833 788603 D ABC transporter permease 787833..788603 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236442.1 CDS STM14_0842 NC_016856.1 788607 789317 D similar to Escherichia coli ATP-binding component of putrescine transport system (AAC73942.1); putative ABC-type polysaccharide/polyol phosphate transport system ATPase component 788607..789317 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236443.1 CDS STM14_0843 NC_016856.1 789411 791189 D cell wall biogenesis; putative glycosyltransferase 789411..791189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236444.1 CDS STM14_0844 NC_016856.1 791382 792215 D cell wall biogenesis; putative glycosyltransferase 791382..792215 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236445.1 CDS STM14_0845 NC_016856.1 792273 794168 D putative glycosyl transferase 792273..794168 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236446.1 CDS STM14_0846 NC_016856.1 794236 794373 D putative cytoplasmic protein 794236..794373 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236447.1 CDS nei NC_016856.1 794422 795213 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 794422..795213 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236448.1 CDS abrB NC_016856.1 795268 796314 R similar to Escherichia coli putative transport protein (AAC73809.1); putative transport protein complement(795268..796314) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236449.1 CDS gltA NC_016856.1 796451 797734 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(796451..797734) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236450.1 CDS STM14_0850 NC_016856.1 797694 798080 D putative inner membrane protein 797694..798080 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236451.1 CDS sdhC NC_016856.1 798489 798878 D similar to Escherichia coli succinate dehydrogenase; cytochrome b556 (AAC73815.1); succinate dehydrogenase cytochrome b556 large membrane subunit 798489..798878 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236452.1 CDS sdhD NC_016856.1 798872 799219 D similar to Escherichia coli succinate dehydrogenase; hydrophobic subunit (AAC73816.1); succinate dehydrogenase cytochrome b556 small membrane subunit 798872..799219 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236453.1 CDS sdhA NC_016856.1 799219 800985 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 799219..800985 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236454.1 CDS sdhB NC_016856.1 800999 801718 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 800999..801718 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236455.1 CDS kgd NC_016856.1 802242 805043 D kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; alpha-ketoglutarate decarboxylase 802242..805043 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236456.1 CDS sucB NC_016856.1 805058 806266 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide acetyltransferase 805058..806266 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236457.1 CDS sucC NC_016856.1 806408 807574 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 806408..807574 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236458.1 CDS sucD NC_016856.1 807574 808443 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 807574..808443 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236459.1 CDS STM14_0859 NC_016856.1 808472 808597 D hypothetical protein 808472..808597 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236460.1 CDS STM14_0860 NC_016856.1 809819 809962 R hypothetical protein complement(809819..809962) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236461.1 CDS cydA NC_016856.1 810026 811594 D similar to Escherichia coli cytochrome d terminal oxidase; polypeptide subunit I (AAC73827.1); cytochrome d terminal oxidase polypeptide subunit I 810026..811594 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236462.1 CDS cydB NC_016856.1 811610 812749 D similar to Escherichia coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); cytochrome d terminal oxidase polypeptide subunit II 811610..812749 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236463.1 CDS ybgT NC_016856.1 812764 812877 D putative outer membrane lipoprotein 812764..812877 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236464.1 CDS STM14_0864 NC_016856.1 812877 813017 D hypothetical protein 812877..813017 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236465.1 CDS ybgE NC_016856.1 813014 813295 D hypothetical protein 813014..813295 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236466.1 CDS ybgC NC_016856.1 813524 813928 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase YbgC 813524..813928 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236467.1 CDS tolQ NC_016856.1 813925 814617 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 813925..814617 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236468.1 CDS tolR NC_016856.1 814621 815049 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 814621..815049 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236469.1 CDS tolA NC_016856.1 815114 816337 D inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 815114..816337 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236470.1 CDS tolB NC_016856.1 816461 817753 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 816461..817753 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236471.1 CDS pal NC_016856.1 817788 818312 D similar to Escherichia coli peptidoglycan-associated lipoprotein (AAC73835.1); tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm; peptidoglycan-associated outer membrane lipoprotein 817788..818312 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236472.1 CDS ybgF NC_016856.1 818322 819110 D hypothetical protein 818322..819110 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236473.1 CDS STM14_0873 NC_016856.1 818715 819254 R hypothetical protein complement(818715..819254) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236474.1 CDS STM14_0879 NC_016856.1 820227 820322 R hypothetical protein complement(820227..820322) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236475.1 CDS nadA NC_016856.1 820575 821618 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 820575..821618 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236476.1 CDS pnuC NC_016856.1 821643 822362 D PNUC protein (SW:PNUC_SALTY); NMN family; nucleoside/purine/pyrimidine transporter 821643..822362 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236477.1 CDS ybgR NC_016856.1 822359 823297 R involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB complement(822359..823297) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236478.1 CDS ybgS NC_016856.1 823408 823794 R similar to Escherichia coli putative homeobox protein (AAC73840.1); hypothetical protein complement(823408..823794) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236479.2 CDS aroG NC_016856.1 824114 825166 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 824114..825166 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236480.1 CDS STM14_0885 NC_016856.1 825260 825805 R similar to Escherichia coli fumarase B; fumarate hydratase class I; anaerobic isozyme (AAC77083.1); fumarate hydratase complement(825260..825805) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236481.1 CDS STM14_0886 NC_016856.1 825820 826665 R Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase complement(825820..826665) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236482.1 CDS STM14_0887 NC_016856.1 826795 827685 D similar to Escherichia coli cyn operon positive regulator (AAC73441.1); LysR family; transcriptional regulator 826795..827685 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236483.1 CDS STM14_0888 NC_016856.1 827686 828669 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC77283.1); LysR family; transcriptional regulator complement(827686..828669) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236484.1 CDS STM14_0889 NC_016856.1 828913 830160 D similar to Escherichia coli putative transport protein (AAC75352.1); putative cation transporter 828913..830160 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236485.1 CDS dcoC NC_016856.1 830210 830455 D catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 830210..830455 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236486.1 CDS dcoB NC_016856.1 832259 833560 D oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); oxaloacetate decarboxylase subunit beta 832259..833560 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236487.1 CDS STM14_0893 NC_016856.1 833679 834377 D putative cytoplasmic protein 833679..834377 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236488.1 CDS STM14_0894 NC_016856.1 834757 835836 D similar to Escherichia coli ferric enterobactin transport (AAC73691.1); putative ABC transport protein 834757..835836 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236489.1 CDS STM14_0895 NC_016856.1 835836 836612 D similar to Escherichia coli ATP-binding component of ferric enterobactin transport (AAC73689.1); putative ABC-type cobalamin/Fe3+-siderophore transport component 835836..836612 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236490.1 CDS gpmA NC_016856.1 836703 837455 R catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(836703..837455) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236491.1 CDS STM14_0897 NC_016856.1 837473 837664 R hypothetical protein complement(837473..837664) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236492.1 CDS galM NC_016856.1 837679 838719 R catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase complement(837679..838719) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236493.1 CDS galK NC_016856.1 838713 839861 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(838713..839861) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236494.1 CDS galT NC_016856.1 839864 840910 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(839864..840910) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236495.1 CDS galE NC_016856.1 840921 841937 R UDP-glucose 4-epimerase (SW:GALE_SALTY); UDP-galactose-4-epimerase complement(840921..841937) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236496.1 CDS STM14_0902 NC_016856.1 842160 843068 R putative inner membrane protein complement(842160..843068) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236497.1 CDS STM14_0903 NC_016856.1 843123 843230 D hypothetical protein 843123..843230 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236498.1 CDS modF NC_016856.1 843239 844714 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; putative molybdenum transport ATP-binding protein ModF complement(843239..844714) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236499.1 CDS modE NC_016856.1 844782 845570 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE complement(844782..845570) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236500.1 CDS STM14_0906 NC_016856.1 845597 845848 D hypothetical protein 845597..845848 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236501.1 CDS modA NC_016856.1 846015 846788 D with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 846015..846788 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236502.1 CDS modB NC_016856.1 846788 847477 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 846788..847477 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236503.1 CDS modC NC_016856.1 847480 848538 D Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 847480..848538 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236504.1 CDS ybhA NC_016856.1 848539 849357 R YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase complement(848539..849357) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236505.1 CDS ybhE NC_016856.1 849521 850516 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 849521..850516 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236506.1 CDS ybhC NC_016856.1 850660 851943 R outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; putative pectinesterase complement(850660..851943) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236507.1 CDS hutI NC_016856.1 852181 853404 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 852181..853404 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236508.1 CDS hutG NC_016856.1 853401 854342 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 853401..854342 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236509.1 CDS hutC NC_016856.1 854387 855112 D similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); histidine utilization repressor 854387..855112 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236510.1 CDS hutH NC_016856.1 856996 858516 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 856996..858516 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236511.1 CDS ybhB NC_016856.1 858601 859077 R YbhB; similar to rat and human kinase inhibitory proteins; putative kinase inhibitor protein complement(858601..859077) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236512.1 CDS bioA NC_016856.1 859135 860424 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(859135..860424) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236513.1 CDS bioB NC_016856.1 860511 861551 D similar to Escherichia coli biotin synthesis (AAC73862.1); biotin synthetase 860511..861551 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236514.1 CDS bioF NC_016856.1 861548 862705 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 861548..862705 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236515.1 CDS bioC NC_016856.1 862689 863444 D putative methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; biotin biosynthesis protein BioC 862689..863444 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236516.1 CDS bioD_1 NC_016856.1 863437 864123 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 863437..864123 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236517.1 CDS STM14_0924 NC_016856.1 864209 864493 D hypothetical protein 864209..864493 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236518.1 CDS STM14_0925 NC_016856.1 864550 864777 D hypothetical protein 864550..864777 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236519.1 CDS uvrB NC_016856.1 864774 866795 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 864774..866795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236520.1 CDS STM14_927 NC_016856.1 867104 867277 D putative cytoplasmic protein 867104..867277 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236521.1 CDS slrP NC_016856.1 867285 869582 D leucine-rich repeat protein SlrP (gi|5107020); secreted by SPI-1; type III secretion; hypothetical protein 867285..869582 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236522.1 CDS ybhK NC_016856.1 869674 870582 R similar to Escherichia coli putative structural protein (AAC73867.1); putative cytoplasmic protein complement(869674..870582) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236523.1 CDS moaA NC_016856.1 870979 871968 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 870979..871968 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236524.1 CDS moaB NC_016856.1 871990 872502 D similar to Escherichia coli molybdopterin biosynthetic protein B (AAC73869.1); molybdopterin biosynthetic protein B 871990..872502 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236525.1 CDS moaC NC_016856.1 872505 872990 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein C 872505..872990 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236526.1 CDS moaD NC_016856.1 872983 873228 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 872983..873228 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236527.1 CDS moaE NC_016856.1 873230 873682 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase large subunit 873230..873682 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236528.1 CDS ybhL NC_016856.1 873730 874434 D putative permease 873730..874434 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236529.1 CDS STM14_936 NC_016856.1 874479 874667 D hypothetical protein 874479..874667 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236530.1 CDS tnpA_2 NC_016856.1 874624 875082 D transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 874624..875082 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236531.1 CDS ybhM NC_016856.1 875292 875999 D putative integral membrane protein 875292..875999 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236532.1 CDS STM14_939 NC_016856.1 876023 876631 D putative inner membrane protein 876023..876631 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236533.1 CDS STM14_940 NC_016856.1 876639 877199 D putative inner membrane protein 876639..877199 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236534.1 CDS ybhN NC_016856.1 877202 878164 R hypothetical protein complement(877202..878164) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236535.1 CDS ybhO NC_016856.1 878164 879405 R similar to Escherichia coli putative synthetase (AAC73876.1); CL synthase; cardiolipin synthase 2 complement(878164..879405) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236536.1 CDS ybhP NC_016856.1 879402 880160 R putative cytoplasmic protein complement(879402..880160) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236537.1 CDS ybhQ NC_016856.1 880293 880703 D putative inner membrane protein 880293..880703 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236538.1 CDS ybhR NC_016856.1 880665 881771 R putative ABC superfamily membrane protein; putative transport protein complement(880665..881771) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236539.1 CDS STM14_946 NC_016856.1 881747 881884 R hypothetical protein complement(881747..881884) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236540.1 CDS ybhS NC_016856.1 881887 883017 R putative ABC superfamily membrane protein; putative transport protein complement(881887..883017) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236541.1 CDS ybhF NC_016856.1 883010 884746 R similar to Escherichia coli putative ATP-binding component of a transport system (AAC73881.1); putative ABC-type multidrug transport system ATPase component complement(883010..884746) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236542.1 CDS STM14_949 NC_016856.1 884739 885734 R similar to Escherichia coli putative membrane protein (AAC73882.1); predicted cation efflux pump; hypothetical protein complement(884739..885734) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236543.1 CDS ybiH NC_016856.1 885734 886408 R similar to Escherichia coli putative transcriptional regulator (AAC73883.1); TetR/AcrR family; putative DNA-binding transcriptional regulator complement(885734..886408) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236544.1 CDS rhlE NC_016856.1 886638 888002 D this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 886638..888002 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236545.1 CDS STM14_952 NC_016856.1 888006 888110 R hypothetical protein complement(888006..888110) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236546.1 CDS dinG NC_016856.1 888210 890354 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 888210..890354 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236547.1 CDS ybiB NC_016856.1 890384 891358 D similar to Escherichia coli putative enzyme (AAC73887.1); hypothetical protein 890384..891358 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236548.1 CDS ybiJ NC_016856.1 891514 891774 R hypothetical protein complement(891514..891774) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236549.1 CDS STM14_956 NC_016856.1 891948 892067 D hypothetical protein 891948..892067 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236550.1 CDS ybiI NC_016856.1 892059 892325 R putative DnaK suppressor protein; hypothetical protein complement(892059..892325) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236551.1 CDS STM14_958 NC_016856.1 892325 892444 R hypothetical protein complement(892325..892444) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236552.1 CDS ybiN NC_016856.1 892530 893456 D putative SAM-dependent methyltransferase 892530..893456 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236553.1 CDS ybiO NC_016856.1 893453 895675 R similar to Escherichia coli putative transport protein (AAC73895.1); hypothetical protein complement(893453..895675) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236554.1 CDS STM14_961 NC_016856.1 895674 895811 D hypothetical protein 895674..895811 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236555.1 CDS glnQ NC_016856.1 895794 896516 R similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein complement(895794..896516) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236556.1 CDS glnP NC_016856.1 896513 897172 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease complement(896513..897172) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236557.1 CDS glnH NC_016856.1 897316 898062 R similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein complement(897316..898062) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236558.1 CDS STM14_965 NC_016856.1 898059 898181 R hypothetical protein complement(898059..898181) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236559.1 CDS dps NC_016856.1 898539 899042 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps complement(898539..899042) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236560.1 CDS STM14_967 NC_016856.1 899158 899316 R hypothetical protein complement(899158..899316) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236561.1 CDS ybiF NC_016856.1 899345 900232 R hypothetical protein in dps-ompX intergenic region (SW:YBIF_SALTY); threonine and homoserine efflux system complement(899345..900232) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236562.1 CDS STM14_969 NC_016856.1 900254 900415 R hypothetical protein complement(900254..900415) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236563.1 CDS STM14_970 NC_016856.1 900375 900506 R hypothetical protein complement(900375..900506) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236564.1 CDS ompX NC_016856.1 900586 901101 D OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 900586..901101 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236565.1 CDS ybiP NC_016856.1 901164 902744 R similar to Escherichia coli putative enzyme (AAC73902.1); putative integral membrane protein complement(901164..902744) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236566.1 CDS STM14_973 NC_016856.1 902910 903080 D hypothetical protein 902910..903080 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236567.1 CDS STM14_974 NC_016856.1 903009 903137 R hypothetical protein complement(903009..903137) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236568.1 CDS STM14_975 NC_016856.1 903323 903796 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 903323..903796 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236569.1 CDS ybiR NC_016856.1 903793 904905 D putative di-/tricarboxylate transporter; putative transporter 903793..904905 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236570.1 CDS ybiS NC_016856.1 904949 905869 R hypothetical protein complement(904949..905869) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236571.1 CDS ybiT NC_016856.1 906088 907680 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC73907.1); contains duplicated ATPase domain; putative ABC transporter ATPase component 906088..907680 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236572.1 CDS STM14_979 NC_016856.1 908136 909032 D C-terminus is similar to N-terminus of some pyridine nucleotide transhydrogenase; putative inner membrane protein 908136..909032 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236573.1 CDS ybiV(2) NC_016856.1 909061 909780 R would extend upstream except for stop codon; putative N-terminally truncated hydrolase; HAD superfamily; putative hydrolase complement(909061..909780) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236574.1 CDS ybiU NC_016856.1 909985 911250 R putative cytoplasmic protein complement(909985..911250) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236575.1 CDS STM14_982 NC_016856.1 911396 911509 D hypothetical protein 911396..911509 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236576.1 CDS ybiV(1) NC_016856.1 911512 912321 D HAD superfamily; putative hydrolase 911512..912321 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236577.1 CDS pflF NC_016856.1 912399 914831 R similar to Escherichia coli putative formate acetyltransferase (AAC73910.1); putative pyruvate formate lyase complement(912399..914831) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236578.1 CDS pflE NC_016856.1 914837 915736 R similar to Escherichia coli putative pyruvate formate-lyase 2 activating enzyme (AAC73911.1); putative pyruvate formate lyase activating enzyme complement(914837..915736) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236579.1 CDS STM14_986 NC_016856.1 915878 916033 R hypothetical protein complement(915878..916033) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236580.1 CDS moeB NC_016856.1 916014 916763 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(916014..916763) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236581.1 CDS moeA NC_016856.1 916763 918004 R is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA complement(916763..918004) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236582.1 CDS STM14_989 NC_016856.1 917997 918137 D hypothetical protein 917997..918137 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236583.1 CDS ybiK NC_016856.1 918201 919142 D similar to Escherichia coli putative asparaginase (AAC73915.1); L-asparaginase 918201..919142 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236584.1 CDS yliA NC_016856.1 919153 921024 D with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 919153..921024 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236585.1 CDS yliB NC_016856.1 921057 922595 D similar to Escherichia coli putative transport protein (AAC73917.1); putative ABC transporter periplasmic binding protein 921057..922595 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236586.1 CDS yliC NC_016856.1 922656 923576 D similar to Escherichia coli putative transport system permease protein (AAC73918.1); putative ABC transporter periplasmic binding protein 922656..923576 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236587.1 CDS yliD NC_016856.1 923579 924490 D similar to Escherichia coli putative transport system permease protein (AAC73919.1); putative ABC transporter inner membrane component 923579..924490 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236588.1 CDS STM14_995 NC_016856.1 924480 924599 R hypothetical protein complement(924480..924599) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236589.1 CDS yliG NC_016856.1 924581 925906 R putative FeS oxidoreductase complement(924581..925906) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236590.1 CDS STM14_997 NC_016856.1 925933 926067 D hypothetical protein 925933..926067 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236591.1 CDS bssR NC_016856.1 926137 926520 D BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssR 926137..926520 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236592.1 CDS STM14_999 NC_016856.1 926622 926762 D hypothetical protein 926622..926762 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236593.1 CDS STM14_1000 NC_016856.1 926970 927134 D hypothetical protein 926970..927134 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236594.1 CDS STM14_1001 NC_016856.1 927233 927748 D putative cytoplasmic protein 927233..927748 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236595.1 CDS STM14_1002 NC_016856.1 927666 928520 D similar to Escherichia coli probable flavoprotein subunit; carnitine metabolism (AAC73152.1); putative electron transfer protein beta subunit 927666..928520 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236596.1 CDS STM14_1003 NC_016856.1 928531 929478 D similar to Escherichia coli putative flavoprotein (AAC74768.1); putative electron transfer protein alpha subunit 928531..929478 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236597.1 CDS STM14_1005 NC_016856.1 929772 930935 D similar to Escherichia coli putative oxidoreductase (AAC74765.1); putative acyl-CoA dehydrogenase 929772..930935 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236598.1 CDS STM14_1006 NC_016856.1 931103 931243 R hypothetical protein complement(931103..931243) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236599.1 CDS STM14_1007 NC_016856.1 931384 933069 D similar to Escherichia coli flavoprotein; probable electron transport protein (AAC74769.1); putative dehydrogenase 931384..933069 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236600.1 CDS STM14_1008 NC_016856.1 933075 933965 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74667.1); LysR family; putative transcriptional regulator complement(933075..933965) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236601.1 CDS STM14_1009 NC_016856.1 934230 934655 R putative inner membrane protein complement(934230..934655) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236602.1 CDS STM14_1010 NC_016856.1 934780 934917 D hypothetical protein 934780..934917 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894087.1 CDS STM14_1011 NC_016856.1 935002 935682 D hypothetical protein 935002..935682 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236603.1 CDS yliJ NC_016856.1 935679 936305 R similar to Escherichia coli putative transferase (AAC73925.1); putative glutathione S-transferase complement(935679..936305) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236604.1 CDS dacC NC_016856.1 936549 937751 D penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 936549..937751 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236605.1 CDS deoR NC_016856.1 937796 938554 R similar to Escherichia coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); DeoR family; DNA-binding transcriptional repressor DeoR complement(937796..938554) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236606.1 CDS ybjG NC_016856.1 938626 939234 R undecaprenyl pyrophosphate phosphatase complement(938626..939234) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236607.1 CDS mdfA NC_016856.1 939547 940779 D similar to Escherichia coli proton motive force efflux pump (AAC73929.1); multidrug translocase 939547..940779 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236608.1 CDS STM14_1017 NC_016856.1 940833 941648 R putative hydrolase complement(940833..941648) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236609.1 CDS STM14_1018 NC_016856.1 941645 942856 R similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73932.1); putative transport protein/regulator complement(941645..942856) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236610.1 CDS STM14_1019 NC_016856.1 942902 943027 D hypothetical protein 942902..943027 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236611.1 CDS STM14_1020 NC_016856.1 943024 943644 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73933.1); TetR/Acr family; putative regulatory protein 943024..943644 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236612.1 CDS STM14_1021 NC_016856.1 943761 945446 R similar to Escherichia coli putative transport protein (AAC73934.1); hypothetical protein complement(943761..945446) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236613.1 CDS ybjM NC_016856.1 945717 946094 D putative inner membrane protein 945717..946094 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236614.1 CDS grxA NC_016856.1 946126 946389 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(946126..946389) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236615.1 CDS ybjC NC_016856.1 946559 946849 D YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 946559..946849 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236616.1 CDS mdaA NC_016856.1 946833 947555 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 946833..947555 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236617.1 CDS rimK NC_016856.1 947613 948515 D responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 947613..948515 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236618.1 CDS ybjN NC_016856.1 948612 949088 D similar to Escherichia coli putative sensory transduction regulator (AAC73940.1); putative cytoplasmic protein 948612..949088 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236619.1 CDS potF NC_016856.1 949437 950549 D similar to Escherichia coli periplasmic putrescine-binding protein; permease protein (AAC73941.1); ABC superfamily periplasmic protein; putrescine ABC transporter periplasmic substrate-binding protein 949437..950549 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236620.1 CDS potG NC_016856.1 950637 951770 D part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 950637..951770 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236621.1 CDS potH NC_016856.1 951780 952733 D similar to Escherichia coli putrescine transport protein; permease (AAC73943.1); ABC superfamily membrane protein; putrescine ABC transporter membrane protein 951780..952733 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236622.1 CDS potI NC_016856.1 952730 953575 D similar to Escherichia coli putrescine transport protein; permease (AAC73944.1); ABC superfamily membrane protein; putrescine ABC transporter membrane protein 952730..953575 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236623.1 CDS ybjO NC_016856.1 953649 954122 D putative inner membrane protein 953649..954122 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236624.1 CDS rumB NC_016856.1 954165 955295 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 954165..955295 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236625.1 CDS STM14_1034 NC_016856.1 955378 955569 D hypothetical protein 955378..955569 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236626.1 CDS ulaA_1 NC_016856.1 955578 956921 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 955578..956921 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236627.1 CDS STM14_1036 NC_016856.1 956951 957271 D similar to SgaT from Vibrio; putative inner membrane protein 956951..957271 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236628.1 CDS STM14_1037 NC_016856.1 957281 958768 D similar to Escherichia coli putative sulfatase (AAC76701.1); putative sulfatase 957281..958768 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236629.1 CDS STM14_1038 NC_016856.1 958765 958965 R hypothetical protein complement(958765..958965) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236630.1 CDS artJ NC_016856.1 958987 959718 R similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); ABC superfamily binding protein; arginine transport system component complement(958987..959718) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236631.1 CDS artM NC_016856.1 959955 960623 R with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM complement(959955..960623) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236632.1 CDS artQ NC_016856.1 960623 961339 R with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ complement(960623..961339) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236633.1 CDS artI NC_016856.1 961346 962077 R similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73950.1); ABC superfamily binding protein; arginine transport system complement(961346..962077) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236634.1 CDS artP NC_016856.1 962095 962823 R With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit complement(962095..962823) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236635.1 CDS ybjP NC_016856.1 963053 963568 R induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; putative lipoprotein complement(963053..963568) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236636.1 CDS orfB NC_016856.1 963696 964019 D hypothetical protein 963696..964019 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236637.1 CDS ybjR NC_016856.1 964016 964846 D similar to Escherichia coli putative regulator (AAC73954.1); putative aminidase 964016..964846 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236638.1 CDS STM14_1047 NC_016856.1 964843 965856 R similar to Escherichia coli putative nucleotide di-P-sugar epimerase or dehydratase (AAC73955.1); putative nucleoside-diphosphate-sugar epimerase complement(964843..965856) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236639.1 CDS ybjT NC_016856.1 965952 967385 R similar to Escherichia coli putative dTDP-glucose enzyme (AAC73956.1); putative nucleoside-diphosphate-sugar epimerase complement(965952..967385) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236640.1 CDS ltaA NC_016856.1 967396 968397 R low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase complement(967396..968397) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236641.1 CDS poxB NC_016856.1 968436 970154 R catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase complement(968436..970154) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236642.1 CDS hcr NC_016856.1 970312 971283 R similar to Escherichia coli putative enzyme (AAC73959.1); hcp gene product; HCP oxidoreductase complement(970312..971283) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236643.1 CDS hcp NC_016856.1 971292 972944 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(971292..972944) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236644.1 CDS STM14_1053 NC_016856.1 972908 973111 D hypothetical protein 972908..973111 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236645.1 CDS ybjE NC_016856.1 973088 973987 R similar to Escherichia coli putative surface protein (AAC73961.1); putative inner membrane protein complement(973088..973987) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236646.1 CDS STM14_1055 NC_016856.1 973986 974153 D hypothetical protein 973986..974153 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236647.1 CDS ybjD NC_016856.1 974189 975847 D similar to RecF protein; hypothetical protein 974189..975847 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236648.1 CDS ybjX NC_016856.1 975844 976812 R similar to Escherichia coli putative enzyme (AAC73964.1); VirK-like protein complement(975844..976812) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236649.1 CDS ybjY NC_016856.1 976940 978058 D confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 976940..978058 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236650.1 CDS ybjZ NC_016856.1 978055 980001 D with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 978055..980001 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236651.1 CDS STM14_1060 NC_016856.1 980013 980138 R hypothetical protein complement(980013..980138) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236652.1 CDS STM14_1061 NC_016856.1 980033 980176 D hypothetical protein 980033..980176 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236653.1 CDS cspD NC_016856.1 980131 980352 R similar to Escherichia coli cold shock protein CspA (AAC73967.1); stationary phase-induced; stress response protein complement(980131..980352) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236654.1 CDS clpS NC_016856.1 980676 980996 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 980676..980996 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236655.1 CDS clpA NC_016856.1 981027 983303 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 981027..983303 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236656.1 CDS STM14_1065 NC_016856.1 983350 983538 D hypothetical protein 983350..983538 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236657.1 CDS tnpA_3 NC_016856.1 983495 983953 D transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 983495..983953 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236658.1 CDS STM14_1067 NC_016856.1 984062 984343 R hypothetical protein complement(984062..984343) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236659.1 CDS STM14_1068 NC_016856.1 984416 985099 R similar to Escherichia coli IS150 putative transposase (AAC76582.1); putative integrase complement(984416..985099) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236660.1 CDS STM14_1069 NC_016856.1 985102 985260 R hypothetical protein complement(985102..985260) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236661.1 CDS STM14_1070 NC_016856.1 985270 985671 R putative cytoplasmic protein complement(985270..985671) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236662.1 CDS STM14_1072 NC_016856.1 986008 986685 R similar to slsA in STM (gi|4324613); similar to STM3761; SlsA complement(986008..986685) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236663.1 CDS STM14_1073 NC_016856.1 986705 987565 R putative cytoplasmic protein complement(986705..987565) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236664.1 CDS STM14_1074 NC_016856.1 987674 988585 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator 987674..988585 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236665.1 CDS infA NC_016856.1 988676 988894 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(988676..988894) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236666.1 CDS STM14_1076 NC_016856.1 988822 989205 R putative inner membrane protein complement(988822..989205) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236667.1 CDS aat NC_016856.1 989206 989910 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(989206..989910) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236668.1 CDS cydC NC_016856.1 989955 991676 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(989955..991676) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236669.1 CDS cydD NC_016856.1 991677 993443 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(991677..993443) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236670.1 CDS trxB NC_016856.1 993557 994525 R catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase complement(993557..994525) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236671.1 CDS STM14_1081 NC_016856.1 994689 994946 R hypothetical protein complement(994689..994946) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236672.1 CDS STM14_1082 NC_016856.1 994867 995142 R hypothetical protein complement(994867..995142) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236673.1 CDS lrp NC_016856.1 995071 995565 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 995071..995565 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236674.1 CDS ftsK NC_016856.1 995700 999785 D DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 995700..999785 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236675.1 CDS lolA NC_016856.1 999925 1000539 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 999925..1000539 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236676.1 CDS ycaJ NC_016856.1 1000549 1001892 D similar to Escherichia coli putative polynucleotide enzyme (AAC73978.1); recombination factor protein RarA 1000549..1001892 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236677.1 CDS STM14_1087 NC_016856.1 1001941 1002111 D hypothetical protein 1001941..1002111 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236678.1 CDS serS NC_016856.1 1002151 1003443 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1002151..1003443 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236679.1 CDS dmsA NC_016856.1 1003680 1006124 D similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); anaerobic dimethyl sulfoxide reductase subunit A 1003680..1006124 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236680.1 CDS dmsB NC_016856.1 1006135 1006752 D similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); anaerobic dimethyl sulfoxide reductase subunit B 1006135..1006752 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236681.1 CDS dmsC NC_016856.1 1006754 1007617 D similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); anaerobic dimethyl sulfoxide reductase subunit C 1006754..1007617 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236682.1 CDS STM14_1092 NC_016856.1 1007647 1007754 D hypothetical protein 1007647..1007754 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236683.1 CDS STM14_1093 NC_016856.1 1007837 1007968 R hypothetical protein complement(1007837..1007968) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236684.1 CDS ycaD NC_016856.1 1007967 1009115 D similar to Escherichia coli putative transport (AAC73984.1); MFS family; MFS family transporter 1007967..1009115 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236685.1 CDS ycaM NC_016856.1 1009333 1010754 D similar to Escherichia coli putative transport (AAC73985.1); APC family; putative amino-acid transporter 1009333..1010754 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236686.1 CDS pflA NC_016856.1 1011047 1011844 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(1011047..1011844) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236687.1 CDS STM14_1097 NC_016856.1 1011963 1012289 R putative cytoplasmic protein complement(1011963..1012289) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236688.1 CDS STM14_1098 NC_016856.1 1012420 1013379 D SopD-like protein 1012420..1013379 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236689.1 CDS pflB NC_016856.1 1013455 1015737 R similar to Escherichia coli formate acetyltransferase 1 (AAC73989.1); induced anaerobically; pyruvate formate lyase I complement(1013455..1015737) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236690.2 CDS focA NC_016856.1 1015797 1016612 R similar to Escherichia coli probable formate transporter; formate channel 1 (AAC73990.1); FNT family; formate transporter complement(1015797..1016612) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236691.1 CDS ycaO NC_016856.1 1017059 1018819 R putative cytoplasmic protein complement(1017059..1018819) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236692.1 CDS STM14_1102 NC_016856.1 1018831 1018959 D hypothetical protein 1018831..1018959 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236693.1 CDS ycaP NC_016856.1 1018956 1019648 D putative inner membrane protein 1018956..1019648 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236694.1 CDS STM14_1104 NC_016856.1 1019641 1019754 D hypothetical protein 1019641..1019754 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236695.1 CDS serC NC_016856.1 1019834 1020922 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1019834..1020922 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236696.1 CDS aroA NC_016856.1 1020993 1022276 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1020993..1022276 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236697.1 CDS ycaL NC_016856.1 1022419 1023180 D similar to Escherichia coli putative heat shock protein (AAC73995.1); has chaperone function; putative Zn-dependent protease 1022419..1023180 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236698.1 CDS STM14_1108 NC_016856.1 1023127 1023381 R hypothetical protein complement(1023127..1023381) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236699.1 CDS cmk NC_016856.1 1023353 1024036 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1023353..1024036 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236700.1 CDS rpsA NC_016856.1 1024150 1025823 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1024150..1025823 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236701.1 CDS ihfB NC_016856.1 1025979 1026263 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1025979..1026263 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236702.1 CDS ycaI NC_016856.1 1026487 1028757 D hypothetical protein 1026487..1028757 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236703.1 CDS msbA NC_016856.1 1028794 1030542 D involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 1028794..1030542 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236704.1 CDS lpxK NC_016856.1 1030539 1031516 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1030539..1031516 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236705.1 CDS ycaQ NC_016856.1 1031560 1032792 D putative cytoplasmic protein 1031560..1032792 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236706.1 CDS ycaR NC_016856.1 1032844 1033026 D hypothetical protein 1032844..1033026 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236707.1 CDS kdsB NC_016856.1 1033023 1033769 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1033023..1033769 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236708.1 CDS STM14_1118 NC_016856.1 1033792 1033944 R hypothetical protein complement(1033792..1033944) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236709.1 CDS STM14_1119 NC_016856.1 1033980 1034873 D hypothetical protein 1033980..1034873 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236710.1 CDS ycbC NC_016856.1 1034853 1035629 R hypothetical protein complement(1034853..1035629) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236711.1 CDS smtA NC_016856.1 1035765 1036568 D involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA 1035765..1036568 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236712.1 CDS mukF NC_016856.1 1036561 1037883 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1036561..1037883 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236713.1 CDS mukE NC_016856.1 1037864 1038568 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1037864..1038568 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236714.1 CDS mukB NC_016856.1 1038568 1043034 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1038568..1043034 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236715.1 CDS ycbB NC_016856.1 1043379 1045220 D similar to Escherichia coli putative amidase (AAC74011.1); hypothetical protein 1043379..1045220 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236716.1 CDS ycbK NC_016856.1 1045480 1046028 D putative outer membrane protein 1045480..1046028 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236717.1 CDS ycbL NC_016856.1 1046056 1046703 D putative metallo-beta-lactamase 1046056..1046703 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236718.1 CDS aspC NC_016856.1 1046765 1047955 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1046765..1047955) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236719.1 CDS STM14_1129 NC_016856.1 1047995 1048126 R hypothetical protein complement(1047995..1048126) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236720.1 CDS ompF NC_016856.1 1048140 1049231 R outer membrane protein F precursor; porin; (SW:OMPF_SALTY); outer membrane protein F complement(1048140..1049231) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236721.1 CDS STM14_1131 NC_016856.1 1049521 1049673 D hypothetical protein 1049521..1049673 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236722.1 CDS asnS NC_016856.1 1049838 1051238 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1049838..1051238) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236723.1 CDS STM14_1133 NC_016856.1 1051307 1051426 R hypothetical protein complement(1051307..1051426) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236724.1 CDS STM14_1134 NC_016856.1 1051439 1051900 R similar to Escherichia coli regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system (AAC73975.1); putative leucine response regulator complement(1051439..1051900) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236725.1 CDS STM14_1135 NC_016856.1 1051897 1052118 R hypothetical protein complement(1051897..1052118) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236726.1 CDS STM14_1136 NC_016856.1 1052217 1053431 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1052217..1053431 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236727.1 CDS STM14_1137 NC_016856.1 1053504 1053662 D hypothetical protein 1053504..1053662 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236728.1 CDS STM14_1138 NC_016856.1 1053676 1055112 D similar to Escherichia coli inner membrane transport protein (AAC73118.1); Lrp family; putative transcriptional regulator 1053676..1055112 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236729.1 CDS pncB NC_016856.1 1055190 1056392 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1055190..1056392) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236730.1 CDS STM14_1140 NC_016856.1 1056587 1057879 R similar to Escherichia coli putative transposase (AAC74651.1); integrase complement(1056587..1057879) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236731.1 CDS STM14_1141 NC_016856.1 1057924 1058172 R excisionase complement(1057924..1058172) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236732.1 CDS STM14_1142 NC_016856.1 1058213 1058452 R hypothetical protein complement(1058213..1058452) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236733.1 CDS STM14_1143 NC_016856.1 1058495 1059604 R hypothetical protein AAC26069.1 (gi|7467267); hypothetical protein complement(1058495..1059604) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236734.1 CDS STM14_1144 NC_016856.1 1059615 1062500 R similar to exodeoxyribonuclease VIII (gi|7467238); exodeoxyribonuclease complement(1059615..1062500) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236735.1 CDS STM14_1145 NC_016856.1 1062627 1062926 R hypothetical protein complement(1062627..1062926) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236736.1 CDS STM14_1146 NC_016856.1 1062948 1063106 R hypothetical protein complement(1062948..1063106) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236737.1 CDS STM14_1147 NC_016856.1 1063099 1063359 R hypothetical protein complement(1063099..1063359) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236738.1 CDS STM14_1148 NC_016856.1 1063409 1063819 R probable regulatory protein (gi|7467281); regulatory protein complement(1063409..1063819) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236739.1 CDS STM14_1149 NC_016856.1 1063939 1064178 D hypothetical protein 1063939..1064178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236740.1 CDS STM14_1150 NC_016856.1 1064144 1064518 D probable regulatory protein (gi|7467282); regulatory protein 1064144..1064518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236741.1 CDS STM14_1151 NC_016856.1 1064603 1065586 D probable replication protein (gi|7467283); regulatory protein 1064603..1065586 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236742.1 CDS STM14_1152 NC_016856.1 1065589 1066338 D acts to load the DnaB helicase onto the intiation site durning DNA replication; putative replication protein 1065589..1066338 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236743.1 CDS STM14_1153 NC_016856.1 1066349 1066696 D hypothetical protein 1066349..1066696 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236744.1 CDS STM14_1154 NC_016856.1 1066693 1067004 D hypothetical protein 1066693..1067004 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236745.1 CDS STM14_1155 NC_016856.1 1067082 1067372 D hypothetical protein 1067082..1067372 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236746.1 CDS STM14_1156 NC_016856.1 1067664 1067897 D hypothetical protein 1067664..1067897 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236747.1 CDS STM14_1157 NC_016856.1 1068009 1068230 D hypothetical protein 1068009..1068230 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236748.1 CDS STM14_1158 NC_016856.1 1068313 1068915 D hypothetical protein 1068313..1068915 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236749.1 CDS STM14_1159 NC_016856.1 1068921 1069121 D hypothetical protein 1068921..1069121 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236750.1 CDS STM14_1160 NC_016856.1 1069124 1069735 D hypothetical protein 1069124..1069735 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236751.1 CDS STM14_1161 NC_016856.1 1069732 1069878 D hypothetical protein 1069732..1069878 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236752.1 CDS STM14_1162 NC_016856.1 1069868 1070665 D DnaJ family; putative molecular chaperone 1069868..1070665 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236753.1 CDS STM14_1163 NC_016856.1 1070732 1071049 D hypothetical protein 1070732..1071049 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236754.1 CDS STM14_1164 NC_016856.1 1071223 1071348 D hypothetical protein 1071223..1071348 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236755.1 CDS STM14_1165 NC_016856.1 1071484 1071933 R hypothetical protein complement(1071484..1071933) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236756.1 CDS gtgA NC_016856.1 1072294 1072980 R bacteriophage virulence determinant complement(1072294..1072980) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236757.2 CDS STM14_1167 NC_016856.1 1073250 1073585 D hypothetical protein 1073250..1073585 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236758.1 CDS STM14_1168 NC_016856.1 1073569 1074021 D similar to Escherichia coli bacteriophage lambda lysozyme (AAC73656.1); lysozyme 1073569..1074021 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236759.1 CDS STM14_1169 NC_016856.1 1074039 1074518 D bacteriophage ES18 gp15 protein (gi|1143595); hypothetical protein 1074039..1074518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236760.1 CDS STM14_1170 NC_016856.1 1074726 1075259 D hypothetical protein 1074726..1075259 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236761.1 CDS STM14_1171 NC_016856.1 1075216 1077354 D hypothetical protein 1075216..1077354 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236762.1 CDS STM14_1172 NC_016856.1 1077554 1079101 D phage portal protein, lambda family 1077554..1079101 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236763.2 CDS STM14_1173 NC_016856.1 1079016 1081106 D similar to Escherichia coli ATP-dependent proteolytic subunit of ClpA-ClpP serine protease; heat shock protein F21.5 (AAC73540.1); Clp protease-like protein 1079016..1081106 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236764.1 CDS STM14_1174 NC_016856.1 1081197 1081520 D putative RecA/RadA recombinase 1081197..1081520 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236765.1 CDS STM14_1175 NC_016856.1 1081513 1081812 D ATP-binding sugar transporter-like protein 1081513..1081812 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236766.1 CDS STM14_1176 NC_016856.1 1081793 1082359 D minor tail protein 1081793..1082359 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236767.1 CDS STM14_1177 NC_016856.1 1082356 1082757 D minor tail protein 1082356..1082757 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236768.1 CDS STM14_1178 NC_016856.1 1082769 1083518 D major tail protein 1082769..1083518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236769.1 CDS STM14_1179 NC_016856.1 1083564 1083962 D minor tail protein 1083564..1083962 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236770.1 CDS STM14_1180 NC_016856.1 1083959 1084288 D minor tail protein 1083959..1084288 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236771.1 CDS STM14_1181 NC_016856.1 1084368 1087355 D similar to lambda phage H tail component (gi|2232364); minor tail protein 1084368..1087355 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236772.1 CDS STM14_1182 NC_016856.1 1087352 1087684 D similar to lambda phage M tail component (gi|2232363); minor tail protein 1087352..1087684 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236773.1 CDS STM14_1183 NC_016856.1 1087783 1088280 D similar to OmpX (gi|2232362); attachment/invasion protein 1087783..1088280 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236774.1 CDS sodC_1 NC_016856.1 1088397 1088930 R superoxide dismutase CuZn precursor (SW:SODC_SALTY); important virulence function; implicated in defence against macrophage killing; superoxide dismutase precursor complement(1088397..1088930) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236775.1 CDS STM14_1185 NC_016856.1 1089020 1089715 D similar to lambda phage L tail component (gi|2232360); minor tail protein 1089020..1089715 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236776.1 CDS STM14_1186 NC_016856.1 1089725 1090462 D tail assembly protein 1089725..1090462 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236777.1 CDS STM14_1187 NC_016856.1 1090360 1091064 D tail assembly protein 1090360..1091064 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236778.1 CDS STM14_1188 NC_016856.1 1091136 1094486 D similar to phage lambda protein J; host specificity protein J 1091136..1094486 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236779.1 CDS STM14_1189 NC_016856.1 1094525 1094767 D hypothetical protein 1094525..1094767 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236780.1 CDS STM14_1190 NC_016856.1 1094821 1097259 D similar to Escherichia coli putative membrane protein (AAC74454.1); tail fiber protein 1094821..1097259 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236781.1 CDS STM14_1191 NC_016856.1 1097259 1097840 D similar to tail fiber assembly protein (gi|8927433); tail fiber assembly like-protein 1097259..1097840 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236782.1 CDS STM14_1192 NC_016856.1 1097844 1097951 R tail fiber assembly protein complement(1097844..1097951) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236783.1 CDS sseI NC_016856.1 1098316 1099284 D secreted effector I (gi|8927434); secreted by SPI-2; colocalizes with host polymerizing actin cytoskeleton; secreted effector protein 1098316..1099284 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236784.1 CDS STM14_1195 NC_016856.1 1099932 1100558 R hypothetical protein complement(1099932..1100558) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236785.1 CDS STM14_1196 NC_016856.1 1100627 1100926 R hypothetical protein complement(1100627..1100926) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236786.1 CDS STM14_1197 NC_016856.1 1100911 1101597 R hypothetical protein complement(1100911..1101597) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236787.1 CDS STM14_1198 NC_016856.1 1101868 1102059 R MsgA-like protein complement(1101868..1102059) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236788.2 CDS pepN NC_016856.1 1102486 1105098 D similar to Escherichia coli aminopeptidase N (AAC74018.1); aminopeptidase N 1102486..1105098 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236789.1 CDS pyrD NC_016856.1 1105306 1106316 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1105306..1106316 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236790.1 CDS STM14_1201 NC_016856.1 1106320 1106445 R hypothetical protein complement(1106320..1106445) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236791.1 CDS ycbW NC_016856.1 1106482 1107024 D putative cytoplasmic protein 1106482..1107024 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236792.1 CDS STM14_1203 NC_016856.1 1107021 1108130 R putative iron-sulfur protein complement(1107021..1108130) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236793.1 CDS ycbY NC_016856.1 1108229 1110337 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1108229..1110337 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236794.1 CDS uup NC_016856.1 1110350 1112257 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1110350..1112257 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236795.1 CDS pqiA NC_016856.1 1112272 1113525 D similar to Escherichia coli paraquat-inducible protein A (AAC74036.1); paraquat-inducible protein A 1112272..1113525 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236796.1 CDS pqiB NC_016856.1 1113530 1115170 D similar to Escherichia coli paraquat-inducible protein B (AAC74037.1); paraquat-inducible protein B 1113530..1115170 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236797.1 CDS ymbA NC_016856.1 1115167 1115730 D putative outer membrane protein 1115167..1115730 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236798.1 CDS STM14_1209 NC_016856.1 1115818 1116021 R hypothetical protein complement(1115818..1116021) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236799.1 CDS rmf NC_016856.1 1115985 1116152 D similar to Escherichia coli ribosome modulation factor (AAC74039.1); involved in dimerization of 70S ribosomes; ribosome modulation factor 1115985..1116152 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236800.1 CDS fabA NC_016856.1 1116252 1116770 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1116252..1116770) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236801.1 CDS lonH NC_016856.1 1116839 1118599 R similar to Escherichia coli putative ATP-dependent protease (AAC74041.1); putative protease complement(1116839..1118599) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236802.1 CDS ycbG NC_016856.1 1118785 1119237 D similar to Escherichia coli putative dehydrogenase (AAC74042.1); hypothetical protein 1118785..1119237 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236803.1 CDS ompA NC_016856.1 1119309 1120361 R OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A complement(1119309..1120361) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236804.1 CDS sulA NC_016856.1 1120718 1121227 R suppressor of lon (SW:SULA_SALTY); inhibitor of cell division and FtsZ ring formation upon DNA damage/inhibition; HslVU and Lon involved in its turnover; SOS cell division inhibitor complement(1120718..1121227) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236805.1 CDS STM14_1216 NC_016856.1 1121248 1121352 R hypothetical protein complement(1121248..1121352) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236806.1 CDS yccR NC_016856.1 1121444 1122049 D putative DNA transformation protein 1121444..1122049 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236807.1 CDS yccS NC_016856.1 1122036 1124189 R efflux PET family; putative transporter complement(1122036..1124189) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236808.1 CDS yccF NC_016856.1 1124208 1124654 R hypothetical protein complement(1124208..1124654) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236809.1 CDS helD NC_016856.1 1124778 1126832 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1124778..1126832 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236810.1 CDS mgsA NC_016856.1 1126868 1127326 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(1126868..1127326) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236811.1 CDS yccT NC_016856.1 1127421 1128083 R hypothetical protein complement(1127421..1128083) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236812.1 CDS STM14_1223 NC_016856.1 1128254 1128670 D putative cytoplasmic protein 1128254..1128670 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236813.1 CDS yccV NC_016856.1 1128715 1129032 R putative inner membrane protein complement(1128715..1129032) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236814.2 CDS yccW NC_016856.1 1129090 1130301 R similar to Escherichia coli putative oxidoreductase (AAC74053.1); putative SAM-dependent methyltransferase complement(1129090..1130301) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236815.1 CDS STM14_1226 NC_016856.1 1130516 1131064 D putative outer membrane protein 1130516..1131064 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236816.1 CDS STM14_1227 NC_016856.1 1131090 1131869 D similar to Escherichia coli putative AraC-type regulatory protein (AAC73647.1); AraC family; regulatory protein 1131090..1131869 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236817.1 CDS yccX NC_016856.1 1131918 1132199 D putative phosphohydrolase 1131918..1132199 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236818.1 CDS yccK NC_016856.1 1132196 1132525 R Part of a sulfur-relay system, TusBCD, required for 2-thiolation of 5-methylaminomethyl-2-thiouridine at tRNA wobble positions; sulfurtransferase TusE complement(1132196..1132525) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236819.1 CDS yccA NC_016856.1 1132612 1133271 R similar to Escherichia coli putative carrier/transport protein (AAC74056.1); TegT family; hypothetical protein complement(1132612..1133271) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236820.2 CDS pipA NC_016856.1 1133892 1134395 R similar to Gifsy prophage protein GtgA; GogA (STM1026); pathogenicity island-encoded protein A complement(1133892..1134395) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236821.1 CDS pipB NC_016856.1 1134794 1135669 R pathogenicity island-encoded protein B; similar to STM2780; secreted by SPI-2; type III secretion; localizes to Salmonella-containing vacuole and host cell membranes; secreted effector protein complement(1134794..1135669) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236822.1 CDS STM14_1234 NC_016856.1 1135671 1135796 D hypothetical protein 1135671..1135796 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236823.1 CDS STM14_1235 NC_016856.1 1135887 1136207 D putative inner membrane protein 1135887..1136207 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236824.1 CDS pipC NC_016856.1 1136217 1136558 R similar to ipgE of Shigella; invasion gene E protein (gi|2582386); similar to type III secretion chaperones SigE and CesT; pathogenicity island-encoded protein C complement(1136217..1136558) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236825.1 CDS sopB NC_016856.1 1136575 1138260 R SigD; Salmonella outer protein B; similar to ipgD of Shigella; invasion gene D protein (gi|2582385); secreted by SPI-1; type III secretion; secreted effector protein complement(1136575..1138260) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236826.1 CDS orfX NC_016856.1 1138592 1138762 D putative cytoplasmic protein 1138592..1138762 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236827.1 CDS STM14_1239 NC_016856.1 1138763 1138873 R putative cytoplasmic protein complement(1138763..1138873) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236828.1 CDS pipD NC_016856.1 1138982 1140544 R similar to dipeptidase A; pathogenicity island-encoded protein D complement(1138982..1140544) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236829.1 CDS copS NC_016856.1 1140624 1141988 R histidine kinase; similar to Escherichia coli putative 2-component sensor protein (AAC75034.1); copper resistance protein complement(1140624..1141988) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236830.1 CDS copR NC_016856.1 1141981 1142661 R induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW complement(1141981..1142661) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236831.1 CDS STM14_1243 NC_016856.1 1142797 1143207 D putative periplasmic protein; hypothetical protein 1142797..1143207 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236832.1 CDS STM14_1244 NC_016856.1 1143230 1143337 R hypothetical protein complement(1143230..1143337) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236833.1 CDS STM14_1245 NC_016856.1 1143361 1143543 D hypothetical protein 1143361..1143543 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236834.1 CDS hpaC NC_016856.1 1143540 1144052 R 4-hydroxyphenylacetate catabolism complement(1143540..1144052) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236835.1 CDS hpaB NC_016856.1 1144070 1145632 R 4-hydroxyphenylacetate catabolism complement(1144070..1145632) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236836.1 CDS hpaR NC_016856.1 1145850 1146290 R 4-hydroxyphenylacetate catabolism complement(1145850..1146290) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236837.1 CDS STM14_1249 NC_016856.1 1146275 1146388 R hypothetical protein complement(1146275..1146388) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236838.1 CDS hpaG NC_016856.1 1146565 1147854 D similar to Escherichia coli putative isomerase (AAC74264.1); 4-hydroxyphenylacetate catabolism 1146565..1147854 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236839.1 CDS hpaE NC_016856.1 1147851 1149317 D similar to Escherichia coli aldehyde dehydrogenase; prefers NADP over NAD (AAC74382.1); 4-hydroxyphenylacetate catabolism 1147851..1149317 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236840.1 CDS hpaD NC_016856.1 1149319 1150170 D 4-hydroxyphenylacetate catabolism 1149319..1150170 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236841.1 CDS hpaF NC_016856.1 1150180 1150560 D 4-hydroxyphenylacetate catabolism 1150180..1150560 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236842.1 CDS STM14_1254 NC_016856.1 1150549 1150701 R hypothetical protein complement(1150549..1150701) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236843.1 CDS hpaH NC_016856.1 1150703 1151506 D similar to Escherichia coli 2-keto-4-pentenoate hydratase (AAC73453.1); 4-hydroxyphenylacetate catabolism 1150703..1151506 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236844.1 CDS hpaI NC_016856.1 1151517 1152308 D 4-hydroxyphenylacetate catabolism 1151517..1152308 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236845.1 CDS hpaX NC_016856.1 1152380 1153756 D similar to Escherichia coli putative transport protein (AAC75306.1); 4-hydroxyphenylacetate catabolism 1152380..1153756 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236846.1 CDS hpaA NC_016856.1 1153766 1154662 D similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); 4-hydroxyphenylacetate catabolism 1153766..1154662 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236847.1 CDS STM14_1259 NC_016856.1 1154676 1155614 D hypothetical protein 1154676..1155614 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236848.1 CDS STM14_1260 NC_016856.1 1155618 1155782 R hypothetical protein complement(1155618..1155782) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236849.1 CDS STM14_1261 NC_016856.1 1156022 1156384 R RssC (gi|12004175); hypothetical protein complement(1156022..1156384) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236850.1 CDS STM14_1262 NC_016856.1 1156832 1156987 D hypothetical protein 1156832..1156987 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236851.1 CDS yccD NC_016856.1 1157038 1157343 R with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM complement(1157038..1157343) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236852.1 CDS cbpA NC_016856.1 1157343 1158263 R functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA complement(1157343..1158263) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236853.1 CDS STM14_1265 NC_016856.1 1158383 1158577 R hypothetical protein complement(1158383..1158577) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236854.1 CDS scsA NC_016856.1 1158498 1158860 D suppressor for copper-sensitivity A (gi|2327003); putative copper binding protein; suppression of copper sensitivity protein A 1158498..1158860 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236855.1 CDS scsB NC_016856.1 1158909 1160795 D suppressor for copper-sensitivity B (gi|2327004); suppression of copper sensitivity; suppression of copper sensitivity protein 1158909..1160795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236856.1 CDS scsC NC_016856.1 1160792 1161415 D suppressor for copper-sensitivity C (gi|2327005); suppression of copper sensitivity; suppression of copper sensitivity protein 1160792..1161415 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236857.1 CDS scsD NC_016856.1 1161405 1161911 D suppressor for copper-sensitivity D (gi|2327006); suppression of copper sensitivity; suppression of copper sensitivity protein 1161405..1161911 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236858.1 CDS agp NC_016856.1 1162044 1163285 D glucose-1-phosphatase precursor (SW:AGP_SALTY); glucose-1-phosphatase/inositol phosphatase 1162044..1163285 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236859.1 CDS yccJ NC_016856.1 1163319 1163546 R hypothetical protein complement(1163319..1163546) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236860.1 CDS wraB NC_016856.1 1163567 1164163 R stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA complement(1163567..1164163) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236861.1 CDS STM14_1273 NC_016856.1 1164294 1164521 D hypothetical protein 1164294..1164521 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236862.1 CDS ymdF NC_016856.1 1164548 1164715 D putative cytoplasmic protein 1164548..1164715 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236863.1 CDS ycdC NC_016856.1 1164852 1165490 D similar to Escherichia coli putative tet operon regulator (AAC74098.1); TetR/AcrR family; putative transcriptional repressor 1164852..1165490 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236864.1 CDS STM14_1277 NC_016856.1 1165487 1165882 R hypothetical protein complement(1165487..1165882) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894088.1 CDS putA NC_016856.1 1165941 1169903 R bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1165941..1169903) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236865.1 CDS STM14_1279 NC_016856.1 1170030 1170278 R hypothetical protein complement(1170030..1170278) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236866.1 CDS STM14_1280 NC_016856.1 1170167 1170286 R hypothetical protein complement(1170167..1170286) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236867.1 CDS putP NC_016856.1 1170325 1171833 D sodium/proline symporter proline permease (SW:PUTP_SALTY); SSS family; major sodium/proline symporter 1170325..1171833 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236868.1 CDS STM14_1282 NC_016856.1 1172347 1172457 D hypothetical protein 1172347..1172457 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236869.1 CDS STM14_1283 NC_016856.1 1172451 1172747 D hypothetical protein 1172451..1172747 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236870.1 CDS STM14_1285 NC_016856.1 1173620 1174501 R putative transcriptional regulator complement(1173620..1174501) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236871.1 CDS STM14_1286 NC_016856.1 1174679 1174783 D hypothetical protein 1174679..1174783 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236872.1 CDS STM14_1287 NC_016856.1 1174786 1176282 R similar to Escherichia coli putative cotransporter (AAC76702.1); putative sodium/glucose cotransporter complement(1174786..1176282) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236873.1 CDS STM14_1288 NC_016856.1 1176314 1176421 D hypothetical protein 1176314..1176421 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236874.1 CDS STM14_1289 NC_016856.1 1176396 1176605 R hypothetical protein complement(1176396..1176605) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236875.1 CDS STM14_1290 NC_016856.1 1176619 1177299 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1176619..1177299) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236876.1 CDS STM14_1291 NC_016856.1 1177413 1177520 R hypothetical protein complement(1177413..1177520) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236877.1 CDS STM14_1292 NC_016856.1 1177573 1177704 D hypothetical protein 1177573..1177704 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236878.1 CDS STM14_1293 NC_016856.1 1177805 1178965 D putative inner membrane protein 1177805..1178965 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236879.1 CDS STM14_1294 NC_016856.1 1179011 1179703 D putative outer membrane protein 1179011..1179703 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236880.1 CDS STM14_1295 NC_016856.1 1179986 1181266 D similar to Escherichia coli putative transport protein (AAC77235.1); putative sialic acid transporter 1179986..1181266 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236881.2 CDS STM14_1296 NC_016856.1 1181280 1182383 D similar to Escherichia coli putative dehydrogenase (AAC77236.1); putative dehydrogenase 1181280..1182383 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236882.1 CDS STM14_1298 NC_016856.1 1183064 1183228 R hypothetical protein complement(1183064..1183228) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236883.1 CDS ycdW NC_016856.1 1183227 1184165 D similar to Escherichia coli putative dehydrogenase (AAC74117.1); putative oxidoreductase 1183227..1184165 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236884.1 CDS ycdX NC_016856.1 1184250 1184987 D similar to hydrolases of the PHP family; putative hydrolase 1184250..1184987 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236885.1 CDS ycdY NC_016856.1 1185011 1185565 D similar to Escherichia coli putative oxidoreductase component (AAC74119.1); putative oxidoreductase 1185011..1185565 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236886.1 CDS ycdZ NC_016856.1 1185618 1186148 D hypothetical protein in phoH-csgG intergenic region (SW:YCDZ_SALTY); putative inner membrane protein 1185618..1186148 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236887.1 CDS csgG NC_016856.1 1186187 1187020 R curli production assembly/transport component CsgG precursor (SW:CSGG_SALTY); putative curli operon transcriptional regulator complement(1186187..1187020) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236888.1 CDS csgF NC_016856.1 1187047 1187463 R nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF complement(1187047..1187463) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236889.1 CDS csgE NC_016856.1 1187490 1187885 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE complement(1187490..1187885) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236890.1 CDS csgD NC_016856.1 1187890 1188540 R activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD complement(1187890..1188540) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236891.1 CDS STM14_1307 NC_016856.1 1188559 1188696 R hypothetical protein complement(1188559..1188696) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236892.1 CDS STM14_1308 NC_016856.1 1188894 1189040 R hypothetical protein complement(1188894..1189040) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236893.1 CDS csgB NC_016856.1 1189295 1189750 D CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1189295..1189750 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236894.1 CDS csgA NC_016856.1 1189792 1190247 D major curlin subunit precursor; fimbrin SEF17 (SW:CSGA_SALTY); coiled surface structures; cryptic; cryptic curlin major subunit 1189792..1190247 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236895.1 CDS csgC NC_016856.1 1190309 1190635 D involved in autoagglutination of curliated cells; not involved in production of curli fibers; putative autoagglutination protein 1190309..1190635 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236896.1 CDS ymdA NC_016856.1 1190766 1191086 D hypothetical protein in csgC-mdoG intergenic region precursor (SW:YMDA_SALTY); hypothetical protein 1190766..1191086 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236897.1 CDS STM14_1313 NC_016856.1 1191175 1191714 D similar to Escherichia coli putative polyprotein (AAC74129.1); putative ACR related to the C-terminal domain of histone macroH2A1; hypothetical protein 1191175..1191714 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236898.1 CDS ymdC NC_016856.1 1191650 1193137 D similar to Escherichia coli putative synthase (AAC74130.1); putative phospholipase 1191650..1193137 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236899.1 CDS mdoC NC_016856.1 1193154 1194308 R required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein complement(1193154..1194308) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236900.1 CDS STM14_1316 NC_016856.1 1194339 1194509 R hypothetical protein complement(1194339..1194509) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236901.1 CDS mdoG NC_016856.1 1194580 1196115 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1194580..1196115 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236902.1 CDS mdoH NC_016856.1 1196108 1198651 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1196108..1198651 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236903.1 CDS yceK NC_016856.1 1198725 1198952 D hypothetical protein 1198725..1198952 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236904.1 CDS msyB NC_016856.1 1198953 1199327 R similar to Escherichia coli acidic protein; suppresses mutants lacking function of protein export (AAC74135.1); hypothetical protein complement(1198953..1199327) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236905.1 CDS yceE NC_016856.1 1199409 1200623 R Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG complement(1199409..1200623) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236906.1 CDS STM14_1322 NC_016856.1 1200601 1201062 D hypothetical protein 1200601..1201062 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236907.1 CDS htrB NC_016856.1 1200778 1201698 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(1200778..1201698) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236908.1 CDS yceA NC_016856.1 1201918 1202970 D hypothetical protein 1201918..1202970 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236909.1 CDS yceI NC_016856.1 1203022 1203597 R hypothetical protein complement(1203022..1203597) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236910.1 CDS STM14_1326 NC_016856.1 1203594 1204166 R similar to Escherichia coli putative cytochrome (AAC74141.1); putative inner membrane protein complement(1203594..1204166) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236911.1 CDS STM14_1327 NC_016856.1 1204177 1204380 D hypothetical protein 1204177..1204380 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236912.1 CDS yceO NC_016856.1 1204429 1204542 R putative inner membrane protein complement(1204429..1204542) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236913.1 CDS solA NC_016856.1 1204583 1205701 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase complement(1204583..1205701) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236914.1 CDS bssS NC_016856.1 1205814 1206068 R BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS complement(1205814..1206068) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236915.1 CDS dinI NC_016856.1 1206358 1206603 R similar to Escherichia coli damage-inducible protein I (AAC74145.1); inhibits UmuD processing; DNA damage-inducible protein I complement(1206358..1206603) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236916.1 CDS pyrC NC_016856.1 1206677 1207723 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1206677..1207723) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236917.1 CDS yceB NC_016856.1 1207828 1208388 R hypothetical protein in pyrC 3'region (SW:YCEB_SALTY); hypothetical protein complement(1207828..1208388) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236918.1 CDS grxB NC_016856.1 1208513 1209160 R cofactor involved in the reduction of disulfides; glutaredoxin complement(1208513..1209160) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236919.1 CDS yceL NC_016856.1 1209224 1210432 R Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH complement(1209224..1210432) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236920.1 CDS rimJ NC_016856.1 1210669 1211253 D similar to Escherichia coli acetylase; acetylates N-terminal alanine of 30S ribosomal subunit protein S5 (AAC74150.1); ribosomal-protein-S5-alanine N-acetyltransferase 1210669..1211253 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236921.1 CDS yceH NC_016856.1 1211289 1211936 D hypothetical protein 1211289..1211936 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236922.1 CDS mviM NC_016856.1 1211938 1212861 D virulence factor MviM (SW:MVIM_SALTY); putative virulence protein 1211938..1212861 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236923.1 CDS STM14_1339 NC_016856.1 1212983 1213159 R hypothetical protein complement(1212983..1213159) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236924.1 CDS mviN NC_016856.1 1213126 1214700 D virulence factor MviN (SW:MVIN_SALTY); putative virulence protein 1213126..1214700 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236925.1 CDS flgN NC_016856.1 1214782 1215204 R flagella synthesis protein FlgN (SW:FLGN_SALTY); putative FlgK/FlgL export chaperone complement(1214782..1215204) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236926.1 CDS flgM NC_016856.1 1215209 1215502 R regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM complement(1215209..1215502) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236927.1 CDS flgA NC_016856.1 1215594 1216253 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1215594..1216253) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236928.1 CDS STM14_1344 NC_016856.1 1216241 1216396 R flagellar basal body P-ring biosynthesis protein FlgA complement(1216241..1216396) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236929.1 CDS flgB NC_016856.1 1216410 1216826 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1216410..1216826 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236930.1 CDS flgC NC_016856.1 1216830 1217234 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1216830..1217234 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236931.1 CDS flgD NC_016856.1 1217246 1217944 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1217246..1217944 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236932.1 CDS flgE NC_016856.1 1217971 1219182 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1217971..1219182 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236933.1 CDS flgF NC_016856.1 1219203 1219958 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1219203..1219958 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236934.1 CDS flgG NC_016856.1 1219972 1220754 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1219972..1220754 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236935.1 CDS flgH NC_016856.1 1220809 1221507 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1220809..1221507 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236936.1 CDS flgI NC_016856.1 1221519 1222616 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1221519..1222616 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236937.1 CDS flgJ NC_016856.1 1222616 1223566 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; peptidoglycan hydrolase 1222616..1223566 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236938.1 CDS flgK NC_016856.1 1223631 1225292 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1223631..1225292 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236939.1 CDS flgL NC_016856.1 1225307 1226260 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 1225307..1226260 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236940.1 CDS STM14_1356 NC_016856.1 1226280 1226474 R hypothetical protein complement(1226280..1226474) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236941.1 CDS rne NC_016856.1 1226517 1229720 R bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E complement(1226517..1229720) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236942.2 CDS rluC NC_016856.1 1230294 1231253 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 1230294..1231253 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236943.1 CDS STM14_1360 NC_016856.1 1231409 1232152 D putative inner membrane lipoprotein 1231409..1232152 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236944.1 CDS STM14_1361 NC_016856.1 1232358 1232582 D hypothetical protein 1232358..1232582 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236945.1 CDS maf_1 NC_016856.1 1232654 1233238 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1232654..1233238) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236946.1 CDS yceD NC_016856.1 1233436 1233957 D hypothetical protein in rne-rpmF intergenic region (G30K) (SW:YCED_SALTY); hypothetical protein 1233436..1233957 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236947.1 CDS rpmF NC_016856.1 1234009 1234182 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1234009..1234182 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236948.1 CDS plsX NC_016856.1 1234316 1235395 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1234316..1235395 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236949.1 CDS fabH NC_016856.1 1235475 1236428 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1235475..1236428 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236950.1 CDS fabD NC_016856.1 1236444 1237373 D malonyl coA-acyl carrier protein transacylase (SW:FABD_SALTY); acyl carrier protein S-malonyltransferase 1236444..1237373 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236951.1 CDS fabG NC_016856.1 1237386 1238120 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1237386..1238120 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236952.1 CDS acpP NC_016856.1 1238276 1238512 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1238276..1238512 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236953.1 CDS fabF NC_016856.1 1238598 1239839 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1238598..1239839 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236954.1 CDS pabC NC_016856.1 1239963 1240772 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1239963..1240772 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236955.1 CDS yceG NC_016856.1 1240775 1241797 D similar to Escherichia coli putative thymidylate kinase (AAC74181.1); hypothetical protein 1240775..1241797 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236956.1 CDS tdk_1 NC_016856.1 1241787 1242428 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1241787..1242428 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236957.1 CDS holB NC_016856.1 1242425 1243429 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1242425..1243429 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236958.1 CDS ycfH NC_016856.1 1243440 1244237 D putative metallodependent hydrolase 1243440..1244237 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236959.1 CDS STM14_1376 NC_016856.1 1244261 1244398 R hypothetical protein complement(1244261..1244398) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236960.1 CDS ptsG NC_016856.1 1244532 1245965 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; glucose-specific PTS system IIBC components 1244532..1245965 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236961.1 CDS fhuE NC_016856.1 1246050 1248224 R similar to Escherichia coli outer membrane receptor for ferric iron uptake (AAC74186.1); receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake; ferric-rhodotorulic acid outer membrane transporter complement(1246050..1248224) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236962.1 CDS ycfF NC_016856.1 1248566 1248925 D purine nucleoside phosphoramidase 1248566..1248925 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236963.1 CDS ycfL NC_016856.1 1248928 1249302 D putative outer membrane lipoprotein 1248928..1249302 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236964.1 CDS ycfM NC_016856.1 1249316 1249954 D putative outer membrane lipoprotein 1249316..1249954 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236965.1 CDS thiK NC_016856.1 1249935 1250759 D catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1249935..1250759 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236966.1 CDS nagZ NC_016856.1 1250770 1251795 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1250770..1251795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236967.1 CDS ycfP NC_016856.1 1251820 1252362 D hypothetical protein 1251820..1252362 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236968.1 CDS ndh NC_016856.1 1252617 1253921 D similar to Escherichia coli respiratory NADH dehydrogenase (AAC74193.1); cupric reductase; respiratory NADH dehydrogenase 2 1252617..1253921 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236969.1 CDS ycfJ NC_016856.1 1254100 1254639 D hypothetical protein 1254100..1254639 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236970.1 CDS ycfQ NC_016856.1 1254714 1255349 R TetR/AcrR family; putative transcriptional repressor complement(1254714..1255349) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236971.1 CDS ycfR NC_016856.1 1255591 1255848 D putative outer membrane protein 1255591..1255848 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236972.1 CDS ycfS NC_016856.1 1255945 1256910 R hypothetical protein complement(1255945..1256910) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236973.1 CDS STM14_1390 NC_016856.1 1256910 1257065 R hypothetical protein complement(1256910..1257065) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236974.1 CDS mfd NC_016856.1 1257058 1260504 R similar to Escherichia coli transcription-repair coupling factor; mutation frequency decline (AAC74198.1); results in preferential repair of transcribed DNA; transcription-repair coupling factor complement(1257058..1260504) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236975.2 CDS ycfU NC_016856.1 1260842 1262041 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1260842..1262041 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236976.1 CDS lolD NC_016856.1 1262034 1262735 D outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 1262034..1262735 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236977.1 CDS ycfW NC_016856.1 1262735 1263979 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1262735..1263979 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236978.1 CDS ycfX NC_016856.1 1264008 1264919 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1264008..1264919 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236979.1 CDS cobB NC_016856.1 1264938 1265759 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1264938..1265759 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236980.1 CDS potD NC_016856.1 1265841 1266887 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein complement(1265841..1266887) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236981.1 CDS potC NC_016856.1 1266912 1267691 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein complement(1266912..1267691) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236982.1 CDS STM14_1399 NC_016856.1 1267794 1267916 R hypothetical protein complement(1267794..1267916) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236983.1 CDS sifA NC_016856.1 1268007 1269017 R translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein complement(1268007..1269017) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236984.1 CDS STM14_1401 NC_016856.1 1269076 1269240 R hypothetical protein complement(1269076..1269240) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236985.1 CDS potB NC_016856.1 1269346 1270209 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein complement(1269346..1270209) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236986.1 CDS potA NC_016856.1 1270193 1271329 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase complement(1270193..1271329) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236987.1 CDS pepT NC_016856.1 1271580 1272809 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1271580..1272809 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236988.1 CDS tnpA_4 NC_016856.1 1273020 1273478 D transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 1273020..1273478 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236989.1 CDS ycfD NC_016856.1 1274898 1276019 R putative cytoplasmic protein complement(1274898..1276019) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236990.1 CDS phoQ NC_016856.1 1276100 1277563 R virulence sensor protein PhoQ (SW:PHOQ_SALTY); in two-component regulatory system with PhoP; ligand is Mg+; sensor protein PhoQ complement(1276100..1277563) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236991.1 CDS phoP NC_016856.1 1277563 1278237 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP complement(1277563..1278237) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236992.1 CDS purB NC_016856.1 1278361 1279731 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1278361..1279731) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236993.1 CDS ycfC NC_016856.1 1279735 1280382 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1279735..1280382) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236994.1 CDS trmU NC_016856.1 1280463 1281569 R Enables the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase complement(1280463..1281569) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236995.1 CDS ymfB NC_016856.1 1281623 1282084 R similar to Escherichia coli putative phosphohydrolase (AAC74218.1); putative MutT-like protein complement(1281623..1282084) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236996.1 CDS STM14_1414 NC_016856.1 1282096 1282425 R hypothetical protein complement(1282096..1282425) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236997.1 CDS ymfC NC_016856.1 1282422 1283087 R putative ribosomal large subunit pseudouridine synthase complement(1282422..1283087) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236998.1 CDS icdA NC_016856.1 1283259 1284509 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1283259..1284509 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005236999.1 CDS STM14_1417 NC_016856.1 1284622 1285764 R prophage lambda integrase complement(1284622..1285764) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237000.1 CDS STM14_1418 NC_016856.1 1285754 1285990 R excisionase complement(1285754..1285990) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237001.1 CDS STM14_1419 NC_016856.1 1286040 1286591 R similar to Salmonella enterica subsp. enterica serovar Newport; Eaa protein complement(1286040..1286591) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237002.1 CDS STM14_1420 NC_016856.1 1286588 1286920 R similar to hypothetical protein SPAB_02272 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]; hypothetical protein complement(1286588..1286920) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237003.2 CDS STM14_1421 NC_016856.1 1286913 1287233 R similar to hypothetical protein SPAB_02271 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]; hypothetical protein complement(1286913..1287233) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237004.1 CDS STM14_1422 NC_016856.1 1287269 1288099 R recombination and repair protein RecT complement(1287269..1288099) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237007.1 CDS STM14_1425 NC_016856.1 1290945 1291115 R similar to hypothetical protein SPAB_02195 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]; hypothetical protein complement(1290945..1291115) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237008.1 CDS STM14_1426 NC_016856.1 1291108 1291224 R similar to hypothetical protein STM2629 [Phage Gifsy-1]; prophage protein complement(1291108..1291224) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237009.1 CDS STM14_1427 NC_016856.1 1291515 1291721 D similar to hypothetical protein Sententeric_23977 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433]; hypothetical protein 1291515..1291721 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237010.1 CDS STM14_1428 NC_016856.1 1291829 1292914 R similar to ATPase domain protein [Geobacter lovleyi SZ]; hypothetical protein complement(1291829..1292914) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237011.1 CDS STM14_1429 NC_016856.1 1293066 1293533 R putative regulator complement(1293066..1293533) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237012.2 CDS STM14_1430 NC_016856.1 1293547 1293774 D similar to hypothetical protein Sententer_01000067_0100027560 [Salmonella enterica subsp. enterica serovar 4,5,12:i:- str. CVM23701]; hypothetical protein 1293547..1293774 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237013.1 CDS STM14_1431 NC_016856.1 1293794 1294114 D similar to Gifsy-1 prophage cI protein; prophage cI protein 1293794..1294114 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237014.1 CDS STM14_1432 NC_016856.1 1294206 1295111 D phage replication protein O 1294206..1295111 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237015.1 CDS STM14_1433 NC_016856.1 1295108 1295800 D phage replication protein P 1295108..1295800 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237016.1 CDS STM14_1434 NC_016856.1 1295815 1296480 D similar to hypothetical protein Salmentericaenterica_07884 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066]; Ead-like protein 1295815..1296480 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237017.1 CDS STM14_1435 NC_016856.1 1296482 1296952 D DNA N-4 cytosine methyltransferase 1296482..1296952 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237018.1 CDS STM14_1436 NC_016856.1 1296955 1297608 D similar to hypothetical protein STY1027 [Salmonella enterica subsp. enterica serovar Typhi str. CT18]; Eaa-like protein 1296955..1297608 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237019.1 CDS STM14_1437 NC_016856.1 1297601 1297882 D similar to hypothetical protein UTI89_C1271 [Escherichia coli UTI89]; hypothetical protein 1297601..1297882 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237020.1 CDS STM14_1438 NC_016856.1 1297994 1298185 D hypothetical protein 1297994..1298185 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237021.1 CDS STM14_1439 NC_016856.1 1298444 1298677 D prophage DinI 1298444..1298677 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237022.1 CDS STM14_1440 NC_016856.1 1298794 1299042 D putative bacteriophage protein 1298794..1299042 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237023.1 CDS STM14_1441 NC_016856.1 1299077 1299676 D IrsA 1299077..1299676 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237024.1 CDS STM14_1442 NC_016856.1 1299673 1299867 D similar to hypothetical protein Salentericaenterica_14861 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]; hypothetical protein 1299673..1299867 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237025.1 CDS STM14_1443 NC_016856.1 1299849 1300145 D similar to [Salmonella enterica subsp. enterica serovar Newport str. SL317]; hypothetical protein 1299849..1300145 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237026.1 CDS STM14_1444 NC_016856.1 1300142 1300696 D putative bacteriophage protein 1300142..1300696 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237027.1 CDS STM14_1445 NC_016856.1 1300693 1300881 D hypothetical protein 1300693..1300881 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237028.1 CDS STM14_1446 NC_016856.1 1300963 1301523 D putative bacteriophage protein 1300963..1301523 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237029.1 CDS STM14_1447 NC_016856.1 1301766 1301954 D similar to hypothetical protein SNSL317_A4459 [Salmonella enterica subsp. enterica serovar Newport str. SL317]; hypothetical protein 1301766..1301954 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237030.1 CDS STM14_1448 NC_016856.1 1302108 1302326 D similar to hypothetical protein Sententerica_21953 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]; hypothetical protein 1302108..1302326 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237031.1 CDS STM14_1449 NC_016856.1 1302338 1302877 R similar to hypothetical protein Sententerica_21948 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]; hypothetical protein complement(1302338..1302877) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237032.1 CDS STM14_1450 NC_016856.1 1303055 1303357 D phage-holin analog protein 1303055..1303357 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237033.1 CDS STM14_1451 NC_016856.1 1303335 1303874 D lysozyme 1303335..1303874 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237034.1 CDS STM14_1452 NC_016856.1 1304044 1304181 D putative bacteriophage protein 1304044..1304181 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237035.1 CDS STM14_1453 NC_016856.1 1304183 1304647 D bacteriophage lysis protein 1304183..1304647 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237036.1 CDS STM14_1454 NC_016856.1 1304874 1305275 R similar to hypothetical protein STM2610 [Phage Gifsy-1]; hypothetical protein complement(1304874..1305275) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237037.1 CDS STM14_1455 NC_016856.1 1305561 1306106 D prophage DNA packaging protein 1305561..1306106 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237038.1 CDS STM14_1456 NC_016856.1 1306078 1308009 D terminase-like large protein 1306078..1308009 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237039.1 CDS STM14_1457 NC_016856.1 1307993 1308196 D head-to-tail joining-like protein 1307993..1308196 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237040.2 CDS STM14_1458 NC_016856.1 1308193 1309773 D phage portal protein, lambda family 1308193..1309773 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237041.1 CDS STM14_1459 NC_016856.1 1309763 1311259 D prophage head-tail preconnector 1309763..1311259 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237042.1 CDS STM14_1460 NC_016856.1 1311272 1311619 D phage head-like protein 1311272..1311619 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237043.1 CDS STM14_1461 NC_016856.1 1311674 1312702 D phage head-like protein 1311674..1312702 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237044.2 CDS STM14_1463 NC_016856.1 1313135 1313518 D minor capsid protein FII 1313135..1313518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237045.1 CDS STM14_1464 NC_016856.1 1313546 1314124 D prophage minor tail protein Z 1313546..1314124 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237046.1 CDS STM14_1465 NC_016856.1 1314173 1315423 R Peyer's patch-specific virulence factor GipA complement(1314173..1315423) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237047.1 CDS STM14_1466 NC_016856.1 1315412 1315813 D phage minor tail protein U 1315412..1315813 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237048.1 CDS STM14_1467 NC_016856.1 1315824 1316567 D major tail-like protein 1315824..1316567 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237049.1 CDS STM14_1468 NC_016856.1 1316618 1317013 D phage minor tail protein G 1316618..1317013 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237050.2 CDS STM14_1469 NC_016856.1 1317034 1317348 D minor tail-like protein 1317034..1317348 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237051.1 CDS STM14_1470 NC_016856.1 1317320 1320415 D phage tail component H-like protein 1317320..1320415 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237052.1 CDS STM14_1471 NC_016856.1 1320418 1320747 D phage tail component M-like protein 1320418..1320747 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237053.2 CDS STM14_1472 NC_016856.1 1320757 1321455 D phage tail component L-like protein 1320757..1321455 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237054.1 CDS STM14_1473 NC_016856.1 1321447 1322052 R hypothetical protein complement(1321447..1322052) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237055.1 CDS STM14_1474 NC_016856.1 1322136 1322744 D tail assembly protein I-like protein 1322136..1322744 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237056.1 CDS STM14_1475 NC_016856.1 1322806 1326168 D host specificity protein 1322806..1326168 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237057.1 CDS STM14_1476 NC_016856.1 1326207 1326449 D similar to conserved hypothetical prophage protein [Phage Gifsy-2]; hypothetical protein 1326207..1326449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237058.1 CDS STM14_1477 NC_016856.1 1326457 1326636 D hypothetical protein 1326457..1326636 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237059.2 CDS STM14_1478 NC_016856.1 1326503 1328944 D side tail fiber protein 1326503..1328944 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237060.1 CDS STM14_1479 NC_016856.1 1328944 1329528 D phage tail assembly-like protein 1328944..1329528 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237061.1 CDS STM14_1480 NC_016856.1 1329626 1329826 R PagJ complement(1329626..1329826) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237062.2 CDS STM14_1481 NC_016856.1 1330854 1331156 D hypothetical protein 1330854..1331156 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237063.1 CDS STM14_1483 NC_016856.1 1332051 1334153 D SspH1 1332051..1334153 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237064.1 CDS STM14_1484 NC_016856.1 1334473 1335144 R similar to hypothetical protein SPAB_02140 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]; hypothetical protein complement(1334473..1335144) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237065.1 CDS STM14_1485 NC_016856.1 1335446 1335610 D isocitrate dehydrogenase 1335446..1335610 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237066.1 CDS STM14_1486 NC_016856.1 1336058 1337182 D putative cytoplasmic protein 1336058..1337182 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237067.1 CDS STM14_1487 NC_016856.1 1337214 1337372 R hypothetical protein complement(1337214..1337372) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237068.1 CDS STM14_1488 NC_016856.1 1337312 1337452 D hypothetical protein 1337312..1337452 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237069.1 CDS STM14_1489 NC_016856.1 1337337 1337585 D hypothetical protein 1337337..1337585 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237070.1 CDS envF NC_016856.1 1338164 1338952 R probable lipoprotein EnvF precursor (SW:ENVF_SALTY); putative envelope lipoprotein complement(1338164..1338952) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237071.1 CDS msgA NC_016856.1 1339441 1339680 R virulence protein MsgA (SW:MSGA_SALTY); reduced mouse virulence; similar to STM2231 and STM2244; macrophage survival protein complement(1339441..1339680) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237072.1 CDS envE NC_016856.1 1339871 1340392 R probable lipoprotein EnvE precursor (SW:ENVE_SALTY); putative envelope protein complement(1339871..1340392) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237073.1 CDS STM14_1494 NC_016856.1 1340405 1340575 R hypothetical protein complement(1340405..1340575) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237074.1 CDS STM14_1495 NC_016856.1 1340807 1341019 R cold shock-like protein CspH (SW:CSPH_SALTY); cold shock-like protein complement(1340807..1341019) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237075.1 CDS STM14_1496 NC_016856.1 1341060 1341188 R hypothetical protein complement(1341060..1341188) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237076.1 CDS pagD NC_016856.1 1341151 1341414 R (SW:PAGD_SALTY); PhoP regulated protein; virulence protein PAGD precursor complement(1341151..1341414) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237077.1 CDS STM14_1499 NC_016856.1 1341718 1341825 D hypothetical protein 1341718..1341825 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237078.1 CDS STM14_1500 NC_016856.1 1342043 1342192 R hypothetical protein complement(1342043..1342192) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237079.1 CDS pagC NC_016856.1 1342226 1342783 D (SW:PAGC_SALTY); PhoP regulated; reduced macrophage survival; virulence membrane protein PAGC precursor 1342226..1342783 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237080.1 CDS STM14_1502 NC_016856.1 1342962 1343096 R hypothetical protein complement(1342962..1343096) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237081.1 CDS pliC NC_016856.1 1344020 1344364 R PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor complement(1344020..1344364) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237082.1 CDS STM14_1506 NC_016856.1 1344493 1344636 R hypothetical protein complement(1344493..1344636) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237083.1 CDS STM14_1507 NC_016856.1 1344742 1344867 D putative lipoprotein 1344742..1344867 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237084.1 CDS STM14_1508 NC_016856.1 1345067 1345339 D putative cytoplasmic protein 1345067..1345339 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237085.1 CDS STM14_1509 NC_016856.1 1345491 1345958 D similar to Escherichia coli small heat shock protein (AAC76710.1); putative molecular chaperone 1345491..1345958 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237086.1 CDS STM14_1510 NC_016856.1 1346067 1346216 R putative inner membrane protein complement(1346067..1346216) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237087.1 CDS STM14_1511 NC_016856.1 1346297 1347340 D putative cytoplasmic protein 1346297..1347340 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237088.1 CDS STM14_1512 NC_016856.1 1347423 1347953 R similar to Escherichia coli putative cytochrome (AAC75040.1); putative inner membrane protein complement(1347423..1347953) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237089.1 CDS STM14_1513 NC_016856.1 1348102 1348416 R putative outer membrane lipoprotein complement(1348102..1348416) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237090.1 CDS STM14_1514 NC_016856.1 1348508 1348666 R hypothetical protein complement(1348508..1348666) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237091.1 CDS STM14_1515 NC_016856.1 1349098 1350732 D putative substrate-binding protein (gi|2337942); putative ABC transporter periplasmic binding protein 1349098..1350732 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237092.1 CDS STM14_1516 NC_016856.1 1350732 1351706 D putative transmembrane protein (gi|2337943); putative ABC transporter protein 1350732..1351706 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237093.1 CDS STM14_1517 NC_016856.1 1351696 1352508 D putative transmembrane protein (gi|2337944); putative ABC transporter protein 1351696..1352508 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237094.1 CDS STM14_1518 NC_016856.1 1352502 1353299 D putative ATPase (gi|2337945); contain duplicated ATPase domain; ABC transporter ATP-binding protein 1352502..1353299 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237095.1 CDS STM14_1519 NC_016856.1 1353293 1353883 D putative ATPase (gi|2337946); contains duplicated ATPase domain; ABC transporter ATP-binding protein 1353293..1353883 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237096.1 CDS STM14_1520 NC_016856.1 1353965 1355098 R putative inner membrane protein complement(1353965..1355098) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237097.1 CDS STM14_1521 NC_016856.1 1355292 1355618 D putative cytoplasmic protein 1355292..1355618 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237098.1 CDS STM14_1523 NC_016856.1 1355815 1356462 D similar to C-terminus of adhesion lipoprotein; hypothetical protein 1355815..1356462 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237099.1 CDS STM14_1524 NC_016856.1 1356451 1356600 R hypothetical protein complement(1356451..1356600) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237100.1 CDS aadA NC_016856.1 1356571 1357359 D streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1356571..1357359 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237101.1 CDS STM14_1526 NC_016856.1 1357504 1358097 D contains CheY-like receiver domain and HTH DNA-binding domain; putative response regulator 1357504..1358097 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237102.1 CDS STM14_1527 NC_016856.1 1358166 1359014 D similar to Escherichia coli putative transcriptional regulator (AAC74246.1); putative transcriptional regulator 1358166..1359014 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237103.1 CDS STM14_1528 NC_016856.1 1358977 1359201 D hypothetical protein 1358977..1359201 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237104.1 CDS STM14_1529 NC_016856.1 1359269 1359517 R putative cytoplasmic protein complement(1359269..1359517) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237105.1 CDS STM14_1530 NC_016856.1 1359596 1359745 R putative cytoplasmic protein complement(1359596..1359745) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237106.1 CDS STM14_1531 NC_016856.1 1359828 1360373 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1359828..1360373 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237107.1 CDS yeaS NC_016856.1 1360570 1361208 D leucine export protein LeuE 1360570..1361208 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237108.1 CDS STM14_1533 NC_016856.1 1361225 1361380 R hypothetical protein complement(1361225..1361380) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237109.1 CDS yeaR NC_016856.1 1361381 1361743 D putative cytoplasmic protein 1361381..1361743 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237110.1 CDS yoaG NC_016856.1 1361746 1361928 D putative cytoplasmic protein 1361746..1361928 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237111.1 CDS STM14_1536 NC_016856.1 1362034 1362159 R hypothetical protein complement(1362034..1362159) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237112.1 CDS STM14_1537 NC_016856.1 1362158 1362799 D putative nitric oxide reductase 1362158..1362799 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237113.1 CDS STM14_1538 NC_016856.1 1362921 1363106 D hypothetical protein 1362921..1363106 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237114.1 CDS yeaQ NC_016856.1 1363114 1363362 D hypothetical protein 1363114..1363362 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237115.1 CDS STM14_1540 NC_016856.1 1363413 1363529 R hypothetical protein complement(1363413..1363529) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237116.1 CDS STM14_1541 NC_016856.1 1363501 1363599 R hypothetical protein complement(1363501..1363599) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237117.1 CDS yaoF NC_016856.1 1363795 1364046 D putative hemolysin 1363795..1364046 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237118.1 CDS STM14_1543 NC_016856.1 1364115 1364426 D hypothetical protein 1364115..1364426 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237119.1 CDS yeaO NC_016856.1 1364412 1364759 R putative cytoplasmic protein complement(1364412..1364759) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237120.1 CDS STM14_1545 NC_016856.1 1364743 1364856 R hypothetical protein complement(1364743..1364856) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237121.1 CDS STM14_1546 NC_016856.1 1364774 1364911 D hypothetical protein 1364774..1364911 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237122.1 CDS yeaN NC_016856.1 1364878 1366062 R similar to Escherichia coli putative amino acid/amine transport protein (AAC74861.1); MFS family; putative amino acid/amine transport protein complement(1364878..1366062) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237123.1 CDS yeaM NC_016856.1 1366163 1366957 D similar to Escherichia coli putative AraC-type regulatory protein (AAC74860.1); AraC/XylS family; putative regulatory protein 1366163..1366957 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237124.1 CDS yeaL NC_016856.1 1366937 1367383 R putative inner membrane protein complement(1366937..1367383) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237125.1 CDS STM14_1550 NC_016856.1 1367385 1367522 D hypothetical protein 1367385..1367522 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237126.1 CDS STM14_1551 NC_016856.1 1367589 1367696 D putative inner membrane protein 1367589..1367696 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237127.1 CDS yeaK NC_016856.1 1367693 1368211 R putative cytoplasmic protein complement(1367693..1368211) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237128.1 CDS yeaJ NC_016856.1 1368261 1369754 R contains diguanylate cyclase/phosphodiesterase domain 1; putative methyl-accepting chemotaxis protein complement(1368261..1369754) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237129.1 CDS STM14_1554 NC_016856.1 1370048 1370245 D hypothetical protein 1370048..1370245 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237130.1 CDS STM14_1555 NC_016856.1 1370136 1370267 D salivary secreted protein 1370136..1370267 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237131.1 CDS yeaH NC_016856.1 1370395 1371681 R hypothetical protein complement(1370395..1371681) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237132.1 CDS STM14_1557 NC_016856.1 1371682 1371801 D hypothetical protein 1371682..1371801 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237133.1 CDS yeaG NC_016856.1 1371804 1373738 R putative serine protein kinase complement(1371804..1373738) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237134.1 CDS STM14_1559 NC_016856.1 1373854 1374027 R hypothetical protein complement(1373854..1374027) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237135.1 CDS mipA NC_016856.1 1374166 1374912 D scaffolding protein for murein-synthesizing holoenzyme; MltA-interacting protein A 1374166..1374912 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237136.1 CDS STM14_1561 NC_016856.1 1375202 1376398 D similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); arylsulfatase regulator 1375202..1376398 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237137.1 CDS STM14_1562 NC_016856.1 1376495 1377352 D similar to Escherichia coli putative aldehyde reductase (AAC74851.1); putative aldehyde reductase 1376495..1377352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237138.1 CDS yeaD NC_016856.1 1377451 1378335 R aldose 1-epimerase complement(1377451..1378335) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237139.1 CDS STM14_1564 NC_016856.1 1378335 1378511 R hypothetical protein complement(1378335..1378511) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237140.1 CDS gapA NC_016856.1 1378670 1379665 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(1378670..1379665) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237141.1 CDS STM14_1566 NC_016856.1 1379655 1379795 D hypothetical protein 1379655..1379795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237142.1 CDS yeaA NC_016856.1 1379977 1380420 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1379977..1380420 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237143.1 CDS yeaC NC_016856.1 1380462 1380740 D putative cytoplasmic protein 1380462..1380740 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237144.1 CDS STM14_1569 NC_016856.1 1380898 1381002 D hypothetical protein 1380898..1381002 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237145.1 CDS pncA NC_016856.1 1381091 1381747 R catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis; nicotinamidase/pyrazinamidase complement(1381091..1381747) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237146.1 CDS ansA NC_016856.1 1381774 1382790 R converts asparagine to aspartate and ammonia; asparaginase complement(1381774..1382790) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237147.1 CDS STM14_1572 NC_016856.1 1382785 1382889 D hypothetical protein 1382785..1382889 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237148.1 CDS sppA NC_016856.1 1382886 1384742 R SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 complement(1382886..1384742) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237149.1 CDS ydjA NC_016856.1 1384916 1385467 D hypothetical protein 1384916..1385467 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237150.1 CDS selD NC_016856.1 1385585 1386628 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1385585..1386628 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237151.1 CDS topB NC_016856.1 1386633 1388582 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1386633..1388582 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237152.1 CDS gdhA NC_016856.1 1388612 1389955 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1388612..1389955) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237153.1 CDS STM14_1578 NC_016856.1 1390194 1390469 D hypothetical protein 1390194..1390469 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237154.1 CDS STM14_1579 NC_016856.1 1390429 1390845 R MutT; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase complement(1390429..1390845) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237155.1 CDS xthA NC_016856.1 1390918 1391724 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1390918..1391724) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237156.1 CDS STM14_1581 NC_016856.1 1391859 1392038 D hypothetical protein 1391859..1392038 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237157.1 CDS argD_1 NC_016856.1 1392170 1393396 D catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1392170..1393396 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237158.1 CDS astA NC_016856.1 1393387 1394421 D arginine succinyltransferase 1393387..1394421 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237159.1 CDS astD NC_016856.1 1394418 1395896 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1394418..1395896 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237160.1 CDS astB NC_016856.1 1395893 1397236 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1395893..1397236 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237161.1 CDS astE NC_016856.1 1397229 1398197 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1397229..1398197 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237162.1 CDS STM14_1587 NC_016856.1 1398234 1398449 D hypothetical protein 1398234..1398449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237163.1 CDS spy NC_016856.1 1398533 1399018 D periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1398533..1399018 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237164.1 CDS STM14_1589 NC_016856.1 1399093 1400001 R 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease complement(1399093..1400001) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237165.1 CDS nadE NC_016856.1 1400095 1400922 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1400095..1400922) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237166.1 CDS STM14_1591 NC_016856.1 1400923 1401129 R hypothetical protein complement(1400923..1401129) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237167.1 CDS osmE NC_016856.1 1401141 1401482 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1401141..1401482 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237168.1 CDS STM14_1593 NC_016856.1 1401610 1401732 D hypothetical protein 1401610..1401732 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237169.1 CDS celA NC_016856.1 1401783 1402103 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1401783..1402103 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237170.1 CDS celB NC_016856.1 1402186 1403544 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1402186..1403544 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237171.1 CDS celC NC_016856.1 1403595 1403942 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1403595..1403942 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237172.1 CDS celD NC_016856.1 1403953 1404795 D represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1403953..1404795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237173.1 CDS celF NC_016856.1 1404920 1406275 D similar to Escherichia coli phospho-beta-glucosidase; cryptic (AAC74804.1); phospho-beta-glucosidase/cellobiose-6-phosphate hydrolase 1404920..1406275 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237174.1 CDS celG NC_016856.1 1406288 1407046 D hypothetical protein 1406288..1407046 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237175.1 CDS katE NC_016856.1 1407090 1409342 R Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II complement(1407090..1409342) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237176.1 CDS STM14_1601 NC_016856.1 1409372 1409509 D hypothetical protein 1409372..1409509 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237177.1 CDS STM14_1602 NC_016856.1 1409399 1409647 R hypothetical protein complement(1409399..1409647) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237178.1 CDS cedA NC_016856.1 1409707 1409949 D affects inhibition after overreplication of chromosome in dnaAcos mutants; cell division modulator 1409707..1409949 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237179.1 CDS ydjN NC_016856.1 1410051 1411442 R similar to Escherichia coli part of a kinase (AAC74799.1); kinase/transporter-like protein complement(1410051..1411442) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237180.1 CDS ydjM NC_016856.1 1411579 1412166 R LexA-regulated gene; hypothetical protein complement(1411579..1412166) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237181.1 CDS yniC NC_016856.1 1412316 1412984 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase complement(1412316..1412984) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237182.1 CDS yniB NC_016856.1 1413133 1413669 D putative regulatory protein 1413133..1413669 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237183.1 CDS STM14_1608 NC_016856.1 1413712 1414572 R putative cytoplasmic protein complement(1413712..1414572) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237184.1 CDS ydiZ NC_016856.1 1414679 1414969 R putative cytoplasmic protein complement(1414679..1414969) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237185.1 CDS pfkB NC_016856.1 1415066 1415998 R similar to Escherichia coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); 6-phosphofructokinase complement(1415066..1415998) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237186.1 CDS ydiY NC_016856.1 1416287 1417045 D salt-inducible; putative outer membrane protein 1416287..1417045 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237187.1 CDS STM14_1612 NC_016856.1 1417094 1418053 R putative outer membrane protein complement(1417094..1418053) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237188.1 CDS STM14_1613 NC_016856.1 1418196 1418510 D putative inner membrane protein 1418196..1418510 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237189.1 CDS STM14_1614 NC_016856.1 1418507 1419361 D putative DNA/RNA non-specific endonuclease 1418507..1419361 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237190.1 CDS STM14_1615 NC_016856.1 1419534 1419740 D hypothetical protein 1419534..1419740 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237191.1 CDS rfc NC_016856.1 1420063 1421286 R O-antigen polymerase (SW:RFC_SALTY); O-antigen polymerase complement(1420063..1421286) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237192.1 CDS STM14_1617 NC_016856.1 1421769 1421954 D hypothetical protein 1421769..1421954 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237193.1 CDS STM14_1618 NC_016856.1 1421956 1422090 D hypothetical protein 1421956..1422090 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237194.1 CDS thrS NC_016856.1 1422178 1424106 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1422178..1424106 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237195.1 CDS infC NC_016856.1 1424110 1424652 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1424110..1424652 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237196.1 CDS rpmI NC_016856.1 1424748 1424945 D similar to Escherichia coli 50S ribosomal subunit protein A (AAC74787.1); 50S ribosomal protein L35 1424748..1424945 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237197.1 CDS rplT NC_016856.1 1424996 1425352 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1424996..1425352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237198.1 CDS STM14_1623 NC_016856.1 1425398 1425562 R hypothetical protein complement(1425398..1425562) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237199.1 CDS pheS NC_016856.1 1425654 1426637 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1425654..1426637 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237200.1 CDS pheT NC_016856.1 1426653 1429040 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1426653..1429040 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237201.1 CDS ihfA NC_016856.1 1429045 1429344 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1429045..1429344 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237202.1 CDS btuC NC_016856.1 1429547 1430527 D with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1429547..1430527 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237203.1 CDS btuE NC_016856.1 1430619 1431170 D similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; putative glutathione peroxidase 1430619..1431170 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237204.1 CDS btuD NC_016856.1 1431170 1431919 D ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1431170..1431919 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237205.1 CDS nlpC NC_016856.1 1431996 1432460 D similar to Escherichia coli lipoprotein (AAC74778.1); lipoprotein 1431996..1432460 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237206.1 CDS STM14_1631 NC_016856.1 1432577 1432696 R hypothetical protein complement(1432577..1432696) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237207.1 CDS ydiV NC_016856.1 1432774 1433487 D putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein 1432774..1433487 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237208.1 CDS ydiU NC_016856.1 1433549 1434991 D hypothetical protein 1433549..1434991 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237209.1 CDS ydiE NC_016856.1 1435026 1435217 R hypothetical protein complement(1435026..1435217) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237210.1 CDS aroH NC_016856.1 1435374 1436420 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1435374..1436420) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237211.1 CDS STM14_1636 NC_016856.1 1436467 1436571 D hypothetical protein 1436467..1436571 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237212.1 CDS ydiA NC_016856.1 1436576 1437409 R hypothetical protein complement(1436576..1437409) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237213.1 CDS STM14_1638 NC_016856.1 1437586 1437699 R hypothetical protein complement(1437586..1437699) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237214.1 CDS pps NC_016856.1 1437746 1440124 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1437746..1440124 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237215.1 CDS ydiD NC_016856.1 1440166 1441806 R acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase complement(1440166..1441806) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237216.1 CDS ydiT NC_016856.1 1441896 1442189 R putative ferredoxin complement(1441896..1442189) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237217.1 CDS ydiS NC_016856.1 1442186 1443472 R similar to Escherichia coli flavoprotein; probably electron transport (AAC74769.1); hypothetical protein complement(1442186..1443472) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237218.1 CDS ydiR NC_016856.1 1443529 1444464 R May play a role in a redox process; electron transfer flavoprotein subunit YdiR complement(1443529..1444464) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237219.1 CDS ydiQ NC_016856.1 1444486 1445250 R YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; putative electron transfer flavoprotein YdiQ complement(1444486..1445250) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237220.1 CDS STM14_1645 NC_016856.1 1445506 1445658 R hypothetical protein complement(1445506..1445658) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237221.1 CDS ydiP NC_016856.1 1445713 1446603 D similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); AraC family; putative transcriptional regulator 1445713..1446603 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237222.1 CDS ydiO NC_016856.1 1446679 1447830 R may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; putative acyl-CoA dehydrogenase complement(1446679..1447830) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237223.1 CDS ydiF NC_016856.1 1447844 1449439 R similar to Escherichia coli putative enzyme (AAC74764.1); putative acetyl-CoA/acetoacetyl-CoA transferase beta subunit complement(1447844..1449439) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237224.1 CDS aroD NC_016856.1 1449593 1450351 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(1449593..1450351) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237225.1 CDS aroE_1 NC_016856.1 1450396 1451262 R YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase complement(1450396..1451262) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237226.1 CDS ydiN NC_016856.1 1451329 1452564 R similar to Escherichia coli putative amino acid/amine transport protein (AAC74761.1); MFS family; putative transport protein complement(1451329..1452564) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237227.1 CDS STM14_1652 NC_016856.1 1452598 1452744 D hypothetical protein 1452598..1452744 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237228.1 CDS STM14_1653 NC_016856.1 1452728 1452838 R hypothetical protein complement(1452728..1452838) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237229.1 CDS ydiM NC_016856.1 1452928 1454139 R similar to Escherichia coli putative transport system permease protein (AAC74760.1); MFS family; putative transport protein complement(1452928..1454139) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237230.1 CDS ydiL NC_016856.1 1454280 1454639 R putative cytoplasmic protein complement(1454280..1454639) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237231.1 CDS ydiK NC_016856.1 1455097 1456215 R YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; putative inner membrane protein complement(1455097..1456215) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237232.1 CDS STM14_1658 NC_016856.1 1456308 1456475 R hypothetical protein complement(1456308..1456475) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237233.1 CDS ydiJ NC_016856.1 1456480 1459536 D similar to Escherichia coli putative oxidase (AAC74757.1); putative oxidase 1456480..1459536 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237234.1 CDS STM14_1660 NC_016856.1 1459533 1459943 D possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 1459533..1459943 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237235.1 CDS ydiH NC_016856.1 1460003 1460230 D putative cytoplasmic protein 1460003..1460230 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237236.1 CDS STM14_1662 NC_016856.1 1460518 1461864 R similar to Escherichia coli part of a kinase (AAC74799.1); putative Na+-dicarboxylate symporter complement(1460518..1461864) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237237.1 CDS sufA NC_016856.1 1462291 1462659 D functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1462291..1462659 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237238.1 CDS sufB NC_016856.1 1462668 1464155 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1462668..1464155 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237239.1 CDS sufC NC_016856.1 1464172 1464918 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1464172..1464918 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237240.1 CDS sufD NC_016856.1 1464893 1466164 D with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1464893..1466164 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237241.1 CDS sufS NC_016856.1 1466161 1467381 D catalyzes the formation of L-alanine and selenide from selenocysteine; selenocysteine lyase 1466161..1467381 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237242.1 CDS ynhA NC_016856.1 1467394 1467810 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1467394..1467810 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237243.1 CDS ynhG NC_016856.1 1467965 1468966 D contains putative LysM domain; hypothetical protein 1467965..1468966 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237244.1 CDS lppB NC_016856.1 1469033 1469272 R similar to Escherichia coli murein lipoprotein (AAC74747.1); putative methyl-accepting chemotaxis protein complement(1469033..1469272) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237245.1 CDS lpp NC_016856.1 1469355 1469591 R similar to Escherichia coli murein lipoprotein (AAC74747.1); murein lipoprotein complement(1469355..1469591) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237246.1 CDS pykF NC_016856.1 1469902 1471314 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1469902..1471314) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237247.1 CDS orf48 NC_016856.1 1471716 1473059 R amino acid permease YeeF-like protein (gi|1526981); putative amino acid permease complement(1471716..1473059) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237248.1 CDS orf32 NC_016856.1 1473081 1473974 R hydrolase or acyltransferase (gi|1526980); putative proline iminopeptidase complement(1473081..1473974) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237249.1 CDS orf245 NC_016856.1 1474033 1474770 R ORF 245 (gi|4456875); similar to STM3548; putative cytoplasmic protein complement(1474033..1474770) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237250.1 CDS orf408 NC_016856.1 1474782 1476008 R ORF 408 (gi|4456874); DeoR family; putative regulatory protein complement(1474782..1476008) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237251.1 CDS ttrA NC_016856.1 1476331 1479393 R tetrathionate reductase subunit A; TtrA (gi|4456873); tetrathionate reductase complex subunit A complement(1476331..1479393) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237252.1 CDS ttrC NC_016856.1 1479386 1480408 R tetrathionate reductase subunit C; TtrC (gi|4456872); tetrathionate reductase complex subunit C complement(1479386..1480408) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237253.1 CDS ttrB NC_016856.1 1480409 1481161 R tetrathionate reductase subunit B; TtrB (gi|4456871); tetrathionate reductase complex subunit B complement(1480409..1481161) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237254.1 CDS ttrS NC_016856.1 1481325 1483103 D tetrathionate reductase complex; TtrS (gi|4456870); two-component regulatory system; sensory histidine kinase 1481325..1483103 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237255.1 CDS ttrR NC_016856.1 1483060 1483698 D tetrathionate reductase complex; TtrR (gi|4456869); two-component regulatory system; response regulator 1483060..1483698 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237256.1 CDS orf70 NC_016856.1 1483796 1484008 D hypothetical 7.9 kDa protein in ssrB-ttRr intergenic region (ORF70) (SW:YDHZ_SALTY); hypothetical protein 1483796..1484008 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237257.1 CDS orf319 NC_016856.1 1484104 1485063 R ORF 319 (gi|4456867); putative inner membrane protein complement(1484104..1485063) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237258.1 CDS orf242 NC_016856.1 1485236 1485964 R ORF 242 (gi|4456866); merR family; putative regulatory protein complement(1485236..1485964) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237259.1 CDS STM14_1685 NC_016856.1 1486016 1486129 R hypothetical protein complement(1486016..1486129) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237260.1 CDS ssrB NC_016856.1 1486143 1486781 R SsrB (gi|2765824); type III secretion system regulator; similar to DegU/UvrY/BvgA; regulated by OmpR-EnvZ; controls regulation of SPI-2 expression; transcriptional activator complement(1486143..1486781) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237261.1 CDS ssrA NC_016856.1 1486812 1489574 R SpiR (gi|1498305); type III secretion system regulator; regulated by OmpR-EnvZ; sensor kinase complement(1486812..1489574) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237262.1 CDS ssaB NC_016856.1 1489975 1490376 D Salmonella typhimurium SpiC (gi|1498306); effects secretion of other SPI-2 proteins; interacts with host cell TassC and Hook3 proteins; type III secretion; prevents fusion of endosome/lysosome with Salmonella-containing vacuoles; secreted effector protein 1489975..1490376 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237263.1 CDS ssaC NC_016856.1 1490378 1491871 D SpiA (gi|1498307); type III secretion system apparatus; outer membrane secretin precursor 1490378..1491871 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237264.1 CDS ssaD NC_016856.1 1491852 1493063 D SpiB (gi|1498308); type III secretion system; virulence protein 1491852..1493063 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237265.1 CDS ssaE NC_016856.1 1493071 1493313 D putative secretory apparatus component (gi|3377860); secretion system effector 1493071..1493313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237266.1 CDS STM14_1692 NC_016856.1 1493410 1493517 D hypothetical protein 1493410..1493517 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237267.1 CDS STM14_1693 NC_016856.1 1493577 1493903 D secretion system chaperone protein 1493577..1493903 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237268.1 CDS STM14_1694 NC_016856.1 1493910 1494500 D putative secreted protein (gi|3377862); translocation machinery component 1493910..1494500 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237269.1 CDS sscA NC_016856.1 1494497 1494970 D putative secretion chaperone (gi|3377863); secretion system chaperone 1494497..1494970 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237270.1 CDS sseC NC_016856.1 1494973 1496427 D SseC (gi|3377864); translocation machinery component 1494973..1496427 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237271.1 CDS sseD NC_016856.1 1496443 1497030 D SseD (gi|3776122); translocation machinery component 1496443..1497030 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237272.1 CDS sseE NC_016856.1 1497033 1497449 D SseE (gi|3377866); secreted effector protein 1497033..1497449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237273.1 CDS sscB NC_016856.1 1497501 1497935 D SscB (gi|3377867); secretion system chaperone 1497501..1497935 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237274.1 CDS sseF NC_016856.1 1497951 1498733 D SseF (gi|3377868); secreted effector protein 1497951..1498733 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237275.1 CDS sseG NC_016856.1 1498730 1499419 D SseG (gi|3377858); secreted effector protein 1498730..1499419 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237276.1 CDS ssaG NC_016856.1 1499513 1499728 D SsaH (gi|2460267); type III secretion system apparatus protein 1499513..1499728 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237277.1 CDS ssaH NC_016856.1 1499769 1499996 D SsaH (gi|3776128); type III secretion system apparatus protein 1499769..1499996 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237278.1 CDS ssaI NC_016856.1 1500008 1500256 D SsaI (gi|3776129); type III secretion system apparatus protein 1500008..1500256 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237279.1 CDS ssaJ NC_016856.1 1500253 1501002 D similar to yscJ/mxiJ/prgK family of lipoproteins; secretion system apparatus lipoprotein SsaJ precursor (SW:SSAJ_SALTY); needle complex inner membrane lipoprotein 1500253..1501002 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237280.1 CDS STM14_1706 NC_016856.1 1501020 1501568 D putative cytoplasmic protein 1501020..1501568 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237281.1 CDS ssaK NC_016856.1 1501565 1502239 D secretion system apparatus protein SsaK (SW:SSAK_SALTY); type III secretion system apparatus protein 1501565..1502239 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237282.1 CDS ssaL NC_016856.1 1502205 1503221 D secretion system apparatus protein SsaL (SW:SSAL_SALTY); type III secretion system apparatus protein 1502205..1503221 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237283.1 CDS ssaM NC_016856.1 1503279 1503647 D secretion system apparatus protein SsaM (SW:SSAM_SALTY); type III secretion system apparatus protein 1503279..1503647 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237284.1 CDS ssaV NC_016856.1 1503632 1505677 D with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1503632..1505677 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237285.1 CDS ssaN NC_016856.1 1505667 1506968 D similar to YscN family of proteins; probable secretion system apparatus ATP synthase SsaN (SW:SSAN_SALTY); type III secretion system ATPase 1505667..1506968 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237286.1 CDS ssaO NC_016856.1 1506971 1507348 D secretion system apparatus protein SsaO (SW:SSAO_SALTY); type III secretion system apparatus protein 1506971..1507348 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237287.1 CDS ssaP NC_016856.1 1507329 1507703 D secretion system apparatus protein SsaP (SW:SSAP_SALTY); type III secretion system apparatus protein 1507329..1507703 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237288.1 CDS ssaQ NC_016856.1 1507684 1508652 D secretion system apparatus protein SsaQ (SW:SSAQ_SALTY); type III secretion system apparatus protein; type III secretion system protein 1507684..1508652 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237289.1 CDS ssaR NC_016856.1 1508720 1509367 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1508720..1509367 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237290.1 CDS ssaS NC_016856.1 1509364 1509630 D secretion system apparatus protein SsaS (SW:SSAS_SALTY); similar to YscS of the secretion system of Yersinia; type III secretion system apparatus protein 1509364..1509630 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237291.1 CDS ssaT NC_016856.1 1509631 1510410 D secretion system apparatus protein SsaT (SW:SSAT_SALTY); similar to YscT of the secretion system of Yersinia; type III secretion system apparatus protein 1509631..1510410 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237292.1 CDS ssaU NC_016856.1 1510407 1511465 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; secretion system apparatus protein SsaU 1510407..1511465 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237293.1 CDS STM14_1719 NC_016856.1 1511477 1511602 D hypothetical protein 1511477..1511602 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237294.1 CDS ydhE NC_016856.1 1511938 1513311 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(1511938..1513311) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237295.1 CDS ribE NC_016856.1 1513528 1514169 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1513528..1514169 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237296.1 CDS cfa NC_016856.1 1514211 1515359 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(1514211..1515359) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237297.1 CDS ydhC NC_016856.1 1515649 1516854 R uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC complement(1515649..1516854) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237298.1 CDS ydhB NC_016856.1 1516967 1517899 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74731.1); LysR family; putative DNA-binding transcriptional regulator 1516967..1517899 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237299.1 CDS purR NC_016856.1 1517896 1518921 R binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR complement(1517896..1518921) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237300.1 CDS STM14_1728 NC_016856.1 1519171 1519452 D hypothetical protein 1519171..1519452 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237301.1 CDS sodB NC_016856.1 1519389 1519970 R SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase complement(1519389..1519970) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237302.1 CDS ydhO NC_016856.1 1520097 1520951 R similar to Escherichia coli putative lipoprotein (AAC74727.1); putative cell wall-associated hydrolase complement(1520097..1520951) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237303.1 CDS ydhD NC_016856.1 1521253 1521600 D hypothetical protein 1521253..1521600 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237304.1 CDS rnt NC_016856.1 1521678 1522325 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1521678..1522325) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237305.1 CDS gloA NC_016856.1 1522426 1522833 R Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I complement(1522426..1522833) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237306.1 CDS nemA NC_016856.1 1522902 1523999 R FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase complement(1522902..1523999) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237307.1 CDS ydhM NC_016856.1 1524058 1524657 R TetR/AcrR family; putative transcriptional repressor complement(1524058..1524657) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237308.1 CDS ydhL NC_016856.1 1524760 1524999 D putative oxidoreductase 1524760..1524999 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237309.1 CDS ydhF NC_016856.1 1525050 1525946 D putative aldo/keto reductase 1525050..1525946 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237310.1 CDS sodC_2 NC_016856.1 1526026 1526547 D SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1526026..1526547 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237311.1 CDS STM14_1739 NC_016856.1 1526523 1528562 R putative inner membrane protein complement(1526523..1528562) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237312.1 CDS ydhJ NC_016856.1 1528562 1529458 R similar to Escherichia coli putative membrane protein (AAC74716.1); putative multidrug resistance efflux pump complement(1528562..1529458) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237313.1 CDS ydhI NC_016856.1 1529425 1529661 R putative inner membrane protein complement(1529425..1529661) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237314.1 CDS slyA NC_016856.1 1529862 1530296 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1529862..1530296 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237315.1 CDS slyB NC_016856.1 1530344 1530811 R outer membrane lipoprotein SlyB precursor (SW:SLYB_SALTY); putative outer membrane lipoprotein complement(1530344..1530811) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237316.1 CDS anmK NC_016856.1 1531083 1532204 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1531083..1532204 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237317.1 CDS mliC NC_016856.1 1532292 1532621 D MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1532292..1532621 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237318.1 CDS pdxH NC_016856.1 1532680 1533336 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1532680..1533336 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237319.1 CDS tyrS NC_016856.1 1533463 1534737 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1533463..1534737 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237320.1 CDS pdxY NC_016856.1 1534797 1535657 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1534797..1535657 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237321.1 CDS gst NC_016856.1 1535716 1536321 R similar to Escherichia coli glutathionine S-transferase (AAC74707.1); glutathionine S-transferase complement(1535716..1536321) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237322.1 CDS tppB NC_016856.1 1536426 1537931 R mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; putative tripeptide transporter permease complement(1536426..1537931) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237323.1 CDS STM14_1751 NC_016856.1 1538110 1538277 D hypothetical protein 1538110..1538277 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237324.1 CDS nth NC_016856.1 1538533 1539168 R DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III complement(1538533..1539168) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237325.1 CDS ydgQ NC_016856.1 1539168 1539860 R With RsxABCDG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; SoxR-reducing system protein RsxE complement(1539168..1539860) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237326.1 CDS ydgP NC_016856.1 1539863 1540483 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(1539863..1540483) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237327.1 CDS rnfD NC_016856.1 1540487 1541545 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD complement(1540487..1541545) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237328.1 CDS STM14_1756 NC_016856.1 1541546 1543753 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(1541546..1543753) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237329.1 CDS ydgM NC_016856.1 1543746 1544324 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(1543746..1544324) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237330.1 CDS STM14_1758 NC_016856.1 1544324 1544905 R inner membrane protein; Na(+)-translocating NADH-quinone reductase subunit E complement(1544324..1544905) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237331.1 CDS ydgK NC_016856.1 1544982 1545422 R putative inner membrane protein complement(1544982..1545422) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237332.1 CDS ydgT NC_016856.1 1545511 1545741 R YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; oriC-binding nucleoid-associated protein complement(1545511..1545741) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237333.2 CDS STM14_1761 NC_016856.1 1546024 1546179 R hypothetical protein complement(1546024..1546179) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237334.1 CDS ydgJ NC_016856.1 1546357 1547397 D putative oxidoreductase 1546357..1547397 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237335.1 CDS add NC_016856.1 1547472 1548473 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(1547472..1548473) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237336.1 CDS STM14_1764 NC_016856.1 1548438 1548683 D hypothetical protein 1548438..1548683 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237337.1 CDS STM14_1767 NC_016856.1 1549052 1549171 R hypothetical protein complement(1549052..1549171) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237338.1 CDS ydgA NC_016856.1 1549177 1550685 R hypothetical protein complement(1549177..1550685) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237339.1 CDS manA NC_016856.1 1550788 1551963 R mannose-6-phosphate isomerase (SW:MANA_SALTY); mannose-6-phosphate isomerase complement(1550788..1551963) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237340.1 CDS fumA NC_016856.1 1552163 1553809 D fumarate hydratase class I aerobic isozyme (SW:FUMA_SALTY); fumarase A 1552163..1553809 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237341.1 CDS STM14_1771 NC_016856.1 1553745 1553906 D fumarase A 1553745..1553906 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237342.1 CDS fumC NC_016856.1 1553977 1555380 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1553977..1555380 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237343.1 CDS tus NC_016856.1 1555377 1556306 R binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein complement(1555377..1556306) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237344.1 CDS rstB NC_016856.1 1556382 1557683 R similar to Escherichia coli sensor histidine protein kinase (RstA regulator) (AAC74681.1); in two-component regulatory system with RstA; sensor protein RstB complement(1556382..1557683) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237345.1 CDS STM14_1775 NC_016856.1 1557794 1559500 R hypothetical protein complement(1557794..1559500) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237346.1 CDS STM14_1776 NC_016856.1 1559385 1559690 R outer membrane protein complement(1559385..1559690) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237347.1 CDS ompN NC_016856.1 1559653 1560786 R similar to Escherichia coli putative outer membrane protein (AAC74459.1); non-specific porin; outer membrane protein N complement(1559653..1560786) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237348.1 CDS rstA NC_016856.1 1561266 1561997 R response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA complement(1561266..1561997) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237349.1 CDS ydgC NC_016856.1 1562124 1562459 D putative inner membrane protein 1562124..1562459 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237350.1 CDS ydgI NC_016856.1 1562521 1563903 R similar to Escherichia coli putative arginine/ornithine antiporter (AAC74677.1); putative amino acid transporter complement(1562521..1563903) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237351.1 CDS STM14_1782 NC_016856.1 1563882 1564016 R putative amino acid permease complement(1563882..1564016) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237352.1 CDS STM14_1783 NC_016856.1 1563914 1564087 R hypothetical protein complement(1563914..1564087) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237353.1 CDS STM14_1784 NC_016856.1 1564099 1564224 D hypothetical protein 1564099..1564224 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237354.1 CDS ydgH NC_016856.1 1564202 1565146 R hypothetical protein complement(1564202..1565146) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237355.1 CDS STM14_1786 NC_016856.1 1565234 1565359 D hypothetical protein 1565234..1565359 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237356.1 CDS pntA NC_016856.1 1565673 1567202 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1565673..1567202 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237357.1 CDS pntB NC_016856.1 1567213 1568601 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1567213..1568601 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237358.1 CDS tqsA NC_016856.1 1568776 1569810 R transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; putative transport protein complement(1568776..1569810) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237359.1 CDS STM14_1790 NC_016856.1 1569946 1570116 D hypothetical protein 1569946..1570116 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237360.1 CDS ydgF NC_016856.1 1570228 1570590 D with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtJ 1570228..1570590 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237361.1 CDS ydgE NC_016856.1 1570577 1570906 D with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtI 1570577..1570906 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237362.1 CDS STM14_1793 NC_016856.1 1570946 1571767 R putative protease complement(1570946..1571767) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237363.1 CDS STM14_1794 NC_016856.1 1571734 1572027 R hypothetical protein complement(1571734..1572027) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237364.1 CDS STM14_1795 NC_016856.1 1572036 1572284 R required for growth and survival under moderately acid conditions; acid shock protein complement(1572036..1572284) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237365.1 CDS STM14_1796 NC_016856.1 1572462 1572653 R hypothetical protein complement(1572462..1572653) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237366.1 CDS ynfM NC_016856.1 1572679 1573932 R similar to Escherichia coli putative transport protein (AAC74668.1); MFS family; putative transport protein complement(1572679..1573932) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237367.1 CDS ynfL NC_016856.1 1574052 1574951 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74667.1); LysR family; putative transcriptional regulator 1574052..1574951 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237368.1 CDS mlc NC_016856.1 1575079 1576299 D similar to Escherichia coli putative NagC-like transcriptional regulator (AAC74666.1); repressor of ptsG and ptsHI; global repressor of carbohydrate metabolism pts operon; NagC/XylR family; pts operon transcriptional repressor 1575079..1576299 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237369.1 CDS bioD_2 NC_016856.1 1576425 1577120 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; putative dithiobiotin synthetase 1576425..1577120 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237370.1 CDS STM14_1801 NC_016856.1 1577076 1578329 R similar to Escherichia coli putative chloride channel (AAC74664.1); putative voltage-gated ClC-type chloride channel ClcB complement(1577076..1578329) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237371.1 CDS STM14_1802 NC_016856.1 1578501 1579649 R similar to Escherichia coli putative ATP-binding component of a transport system (AAC75190.1); ABC-type ATPase component; proline/glycine betaine transport system complement(1578501..1579649) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237372.1 CDS STM14_1803 NC_016856.1 1579649 1580296 R similar to Escherichia coli putative transport system permease protein (AAC75189.1); binding-protein-dependent; putative ABC transporter permease complement(1579649..1580296) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237373.1 CDS STM14_1804 NC_016856.1 1580306 1581208 R similar to Escherichia coli putative transport system permease protein (AAC75192.1); putative ABC transporter periplasmic component complement(1580306..1581208) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237374.1 CDS STM14_1805 NC_016856.1 1581237 1581947 R similar to Escherichia coli putative transport system permease protein (AAC75189.1); ABC-type transport systems; putative transport system permease component complement(1581237..1581947) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237375.1 CDS ynfI NC_016856.1 1582252 1582866 R binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; twin-argninine leader-binding protein DmsD complement(1582252..1582866) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237376.1 CDS STM14_1807 NC_016856.1 1582909 1583766 R similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative dimethylsulfoxide reductase complement(1582909..1583766) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237377.1 CDS STM14_1808 NC_016856.1 1583768 1584385 R similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative dimethyl sulfoxide reductase complement(1583768..1584385) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237378.1 CDS STM14_1809 NC_016856.1 1584396 1586831 R similar to Escherichia coli putative oxidoreductase; major subunit (AAC74660.1); putative dimethyl sulfoxide reductase complement(1584396..1586831) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237379.1 CDS STM14_1810 NC_016856.1 1586812 1587033 R putative dimethyl sulfoxide reductase subunit A complement(1586812..1587033) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237380.1 CDS STM14_1811 NC_016856.1 1586930 1589371 R similar to Escherichia coli putative oxidoreductase; major subunit (AAC74659.1); putative dimethyl sulfoxide reductase chain A1 complement(1586930..1589371) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237381.1 CDS ynfD NC_016856.1 1589525 1589833 R putative outer membrane protein complement(1589525..1589833) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237382.1 CDS ynfC NC_016856.1 1589937 1590647 D hypothetical protein 1589937..1590647 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237383.1 CDS speG NC_016856.1 1590688 1591248 R similar to Escherichia coli spermidine N1-acetyltransferase (AAC74656.1); spermidine N1-acetyltransferase complement(1590688..1591248) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237384.1 CDS ynfB NC_016856.1 1591284 1591625 R hypothetical protein complement(1591284..1591625) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237385.1 CDS STM14_1816 NC_016856.1 1591641 1591757 R hypothetical protein complement(1591641..1591757) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237386.1 CDS ynfA NC_016856.1 1591778 1592104 D hypothetical protein 1591778..1592104 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237387.1 CDS rspA NC_016856.1 1592226 1593440 D similar to Escherichia coli starvation-sensing protein (AAC74653.1); putative dehydratase 1592226..1593440 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237388.1 CDS rspB NC_016856.1 1593451 1594470 D similar to Escherichia coli starvation-sensing protein (AAC74652.1); putative dehydrogenase 1593451..1594470 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237389.1 CDS STM14_1821 NC_016856.1 1595845 1596036 D putative membrane transport protein 1595845..1596036 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237390.1 CDS ydfI NC_016856.1 1596047 1597513 D similar to Escherichia coli putative oxidoreductase (AAC74615.1); putative mannitol dehydrogenase 1596047..1597513 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237391.1 CDS ydfZ NC_016856.1 1597580 1597783 R putative cytoplasmic protein complement(1597580..1597783) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237392.1 CDS ydfH NC_016856.1 1597964 1598650 R GntR family; putative regulatory protein complement(1597964..1598650) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237393.1 CDS ydfG NC_016856.1 1598780 1599541 R NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase complement(1598780..1599541) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237394.1 CDS dcp NC_016856.1 1599665 1601707 D peptidyl-dipeptidase DCP (SW:DCP_SALTY); dipeptidyl carboxypeptidase II 1599665..1601707 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237395.1 CDS STM14_1827 NC_016856.1 1601704 1601919 R hypothetical protein complement(1601704..1601919) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237396.1 CDS STM14_1828 NC_016856.1 1601786 1601923 D peptidyl-dipeptidase dcp 1601786..1601923 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237397.1 CDS STM14_1829 NC_016856.1 1602052 1602234 D putative cytoplasmic protein 1602052..1602234 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237398.1 CDS ydeJ NC_016856.1 1602354 1602881 R competence damage-inducible protein A complement(1602354..1602881) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237399.1 CDS STM14_1831 NC_016856.1 1602970 1603068 R hypothetical protein complement(1602970..1603068) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237400.1 CDS ydeI NC_016856.1 1603308 1603700 D hypothetical protein 1603308..1603700 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237401.1 CDS STM14_1833 NC_016856.1 1603865 1604014 R hypothetical protein complement(1603865..1604014) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237402.1 CDS ydeE NC_016856.1 1604391 1605578 R YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; putative MFS-type transporter YdeE complement(1604391..1605578) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237403.1 CDS ydeD NC_016856.1 1605806 1606708 D probable cysteine metabolite efflux pump (SW:EAMA_SALTY); integral membrane protein; O-acetylserine/cysteine export protein 1605806..1606708 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237404.1 CDS marB NC_016856.1 1606827 1607042 R multiple antibiotic resistance protein MarB (SW:MARB_SALTY); hypothetical protein complement(1606827..1607042) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237405.1 CDS marA NC_016856.1 1607071 1607454 R transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA complement(1607071..1607454) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237406.1 CDS marR NC_016856.1 1607474 1607908 R Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR complement(1607474..1607908) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237407.1 CDS marC NC_016856.1 1608167 1608832 D protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 1608167..1608832 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237408.1 CDS ydeA NC_016856.1 1608879 1610069 R similar to Escherichia coli putative resistance/regulatory protein (AAC74601.1); contributes to control of arabinose regulon; MFS family; sugar efflux transporter complement(1608879..1610069) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237409.1 CDS yneJ NC_016856.1 1610185 1611057 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74599.1); LysR family; putative transcriptional regulator complement(1610185..1611057) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237410.1 CDS yneI NC_016856.1 1611160 1612548 D similar to Escherichia coli putative aldehyde dehydrogenase (AAC74598.1); putative succinate-semialdehyde dehydrogenase 1611160..1612548 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237411.1 CDS yneH NC_016856.1 1612621 1613547 D catalyzes the formation of glutamate from glutamine; glutaminase 1612621..1613547 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237412.1 CDS yneG NC_016856.1 1613547 1613906 D putative cytoplasmic protein 1613547..1613906 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237413.1 CDS STM14_1845 NC_016856.1 1614130 1615077 D putative inner membrane protein 1614130..1615077 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237414.1 CDS STM14_1846 NC_016856.1 1615133 1615675 R putative outer membrane protein complement(1615133..1615675) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237415.1 CDS STM14_1847 NC_016856.1 1615524 1615850 D putative inner membrane protein 1615524..1615850 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237416.1 CDS STM14_1848 NC_016856.1 1616392 1617510 D similar to Escherichia coli putative outer membrane protein (AAC74459.1); putative outer membrane protein 1616392..1617510 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237417.1 CDS STM14_1849 NC_016856.1 1617651 1617992 R similar to Escherichia coli may modulate levels of hydrogenease-2 (AAC76027.1); putative hydrogenase complement(1617651..1617992) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237418.1 CDS STM14_1850 NC_016856.1 1618005 1618892 R dehydrogenase complement(1618005..1618892) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237419.1 CDS STM14_1851 NC_016856.1 1618880 1619941 R similar to Escherichia coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); putative hydrogenase complement(1618880..1619941) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237420.1 CDS STM14_1852 NC_016856.1 1619959 1620369 R similar to Escherichia coli processing of HyaA and HyaB proteins (AAC74061.1); putative hydrogenase complement(1619959..1620369) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237421.1 CDS STM14_1853 NC_016856.1 1620366 1620665 R putative hydrogenase protein complement(1620366..1620665) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237422.1 CDS STM14_1854 NC_016856.1 1620665 1621273 R similar to Escherichia coli processing of HyaA and HyaB proteins (AAC74060.1); putative hydrogenase maturation protease complement(1620665..1621273) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237423.1 CDS STM14_1855 NC_016856.1 1621279 1622022 R similar to Escherichia coli probable Ni/Fe hydrogenase 1 b-type cytochrome subunit (AAC74059.1); putative Ni/Fe hydrogenase 1 b-type cytochrome subunit complement(1621279..1622022) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237424.1 CDS STM14_1856 NC_016856.1 1621973 1623775 R similar to Escherichia coli hydrogenase-1 large subunit (AAC74058.1); putative hydrogenase-1 large subunit complement(1621973..1623775) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237425.1 CDS STM14_1857 NC_016856.1 1623778 1624881 R similar to Escherichia coli hydrogenase-1 small subunit (AAC74057.1); putative hydrogenase-1 small subunit complement(1623778..1624881) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237426.1 CDS STM14_1858 NC_016856.1 1625009 1625161 R hypothetical protein complement(1625009..1625161) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237427.1 CDS STM14_1859 NC_016856.1 1625310 1626401 D putative hydrolase 1625310..1626401 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237428.2 CDS STM14_1860 NC_016856.1 1626567 1627238 D similar to Escherichia coli regulator for uxu operon (AAC77280.1); GntR family; putative regulatory protein 1626567..1627238 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237429.1 CDS STM14_1861 NC_016856.1 1627297 1628322 R similar to Escherichia coli starvation-sensing protein (AAC74652.1); putative zinc-binding dehydrogenase complement(1627297..1628322) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237430.1 CDS STM14_1862 NC_016856.1 1628297 1629583 R similar to Escherichia coli putative transport protein (AAC76161.1); putative transport protein complement(1628297..1629583) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237431.2 CDS pqaA NC_016856.1 1629760 1631250 R PhoPQ-regulated protein complement(1629760..1631250) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237432.1 CDS STM14_1864 NC_016856.1 1631386 1632627 R similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73932.1); putative multidrug efflux protein complement(1631386..1632627) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237433.1 CDS STM14_1865 NC_016856.1 1632617 1634125 R similar to Escherichia coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1); hypothetical protein complement(1632617..1634125) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237434.1 CDS STM14_1866 NC_016856.1 1634170 1634658 D marR-family; putative transcriptional regulator 1634170..1634658 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237435.1 CDS STM14_1867 NC_016856.1 1634718 1634879 R hypothetical protein complement(1634718..1634879) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237436.1 CDS STM14_1868 NC_016856.1 1634851 1635930 D similar to Escherichia coli synthesis of queuine in tRNA; probably S-adenosylmethionine/tRNA ribosyltransferase-isomerase (AAC73508.1); putative S-adenosylmethionine/tRNA-ribosyltransferase-isomerase 1634851..1635930 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237437.1 CDS STM14_1869 NC_016856.1 1635982 1636371 R putative translation initiation inhibitor complement(1635982..1636371) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237438.1 CDS STM14_1870 NC_016856.1 1636542 1636826 R putative cytoplasmic protein complement(1636542..1636826) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237439.1 CDS STM14_1871 NC_016856.1 1636816 1637064 R putative cytoplasmic protein complement(1636816..1637064) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237440.1 CDS STM14_1872 NC_016856.1 1637216 1637431 D putative phage-related secreted protein 1637216..1637431 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237441.1 CDS STM14_1873 NC_016856.1 1637421 1637753 D hypothetical protein 1637421..1637753 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237442.1 CDS STM14_1874 NC_016856.1 1637896 1638804 D putative cytoplasmic protein 1637896..1638804 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237443.1 CDS STM14_1876 NC_016856.1 1639903 1640112 R hypothetical protein complement(1639903..1640112) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237444.1 CDS STM14_1877 NC_016856.1 1640382 1641848 R putative coiled-coil protein complement(1640382..1641848) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237445.1 CDS STM14_1878 NC_016856.1 1642107 1643114 D similar to Escherichia coli repressor of galETK operon (AAC75876.1); putative transcriptional regulator 1642107..1643114 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237446.1 CDS STM14_1879 NC_016856.1 1643258 1644709 D similar to Escherichia coli transport of dicarboxylates (AAC73722.1); putative Na+/H+ antiporter 1643258..1644709 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237447.1 CDS STM14_1880 NC_016856.1 1644722 1645924 D similar to Escherichia coli enzyme that may degrade or block biosynthesis of endogenous mal inducer; probably aminotrasferase (AAC74694.1); putative aminotransferase 1644722..1645924 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237448.1 CDS STM14_1881 NC_016856.1 1646037 1648112 R similar to Escherichia coli part of glycogen operon; glycosyl hydrolase; debranching enzyme (AAC76456.1); putative glycosyl hydrolase complement(1646037..1648112) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237449.1 CDS STM14_1882 NC_016856.1 1648169 1650697 R similar to Escherichia coli trehalase 6-P hydrolase (AAC77196.1); putative glycosyl hydrolase complement(1648169..1650697) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237450.1 CDS STM14_1883 NC_016856.1 1650694 1652478 R similar to Escherichia coli 1,4-alpha-glucan branching enzyme (AAC76457.1); putative alpha amylase complement(1650694..1652478) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237451.1 CDS STM14_1884 NC_016856.1 1652607 1653392 R outer membrane or secreted; putative lipoprotein complement(1652607..1653392) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237452.1 CDS hdeB NC_016856.1 1653535 1653864 R acid-resistance protein complement(1653535..1653864) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237453.1 CDS osmC NC_016856.1 1654214 1654645 R similar to Escherichia coli osmotically inducible protein (AAC74555.1); resistance protein; osmotically inducible; putative envelope protein complement(1654214..1654645) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237454.1 CDS yddX NC_016856.1 1655158 1655373 D biofilm-dependent modulation protein 1655158..1655373 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237455.1 CDS rpsV NC_016856.1 1655468 1655611 D protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1655468..1655611 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237456.1 CDS sfcA NC_016856.1 1655788 1657485 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1655788..1657485 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237457.1 CDS STM14_1890 NC_016856.1 1657503 1657634 D hypothetical protein 1657503..1657634 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237458.1 CDS adhP NC_016856.1 1657771 1658781 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1657771..1658781 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237459.1 CDS fdnI NC_016856.1 1658872 1659528 R nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma complement(1658872..1659528) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237460.1 CDS fdnH NC_016856.1 1659521 1660405 R similar to Escherichia coli formate dehydrogenase-N; nitrate-inducible; iron-sulfur beta subunit (AAD13439.1); Fe-S beta subunit; formate dehydrogenase-N beta subunit complement(1659521..1660405) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237461.1 CDS fdnG NC_016856.1 1660419 1663466 R similar to Escherichia coli formate dehydrogenase-N; nitrate-inducible (AAD13438.1); putative molybdopterin oxidoreductases; formate dehydrogenase-N subunit alpha complement(1660419..1663466) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237462.1 CDS STM14_1895 NC_016856.1 1663489 1663641 D hypothetical protein 1663489..1663641 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237463.1 CDS yddG NC_016856.1 1663744 1664625 D hypothetical protein 1663744..1664625 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237464.1 CDS STM14_1897 NC_016856.1 1664885 1665067 R hypothetical protein complement(1664885..1665067) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237465.1 CDS nmpC NC_016856.1 1665150 1666238 D outer membrane porin protein PmpD (SW:OMPD_SALTY); putative outer membrane porin 1665150..1666238 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237466.1 CDS STM14_1899 NC_016856.1 1666322 1666762 D putative cytoplasmic protein 1666322..1666762 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237467.1 CDS smvA NC_016856.1 1666787 1668274 R methyl viologen resistance protein SmvA (SW:SMVA_SALTY); methyl viologen resistance complement(1666787..1668274) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237468.1 CDS STM14_1901 NC_016856.1 1668391 1668969 D TetR family; putative transcriptional regulator 1668391..1668969 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237469.1 CDS STM14_1902 NC_016856.1 1668962 1669093 D hypothetical protein 1668962..1669093 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237470.1 CDS narU NC_016856.1 1669184 1670572 D nitrite extrusion protein 2; nitrite facilitator 2 (SW:NARU_SALTY); MFS superfamily; nitrate extrusion protein 1669184..1670572 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237471.1 CDS STM14_1904 NC_016856.1 1670559 1670702 R hypothetical protein complement(1670559..1670702) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237472.1 CDS narZ NC_016856.1 1670664 1674404 D similar to Escherichia coli cryptic nitrate reductase 2; alpha subunit (AAC74550.1); nitrate reductase 2 alpha subunit 1670664..1674404 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237473.1 CDS narY NC_016856.1 1674401 1675945 D similar to Escherichia coli cryptic nitrate reductase 2; beta subunit (AAC74549.1); nitrate reductase 2 beta subunit 1674401..1675945 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237474.1 CDS narW NC_016856.1 1675945 1676640 D similar to Escherichia coli cryptic nitrate reductase 2; delta subunit; assembly function (AAC74548.1); nitrate reductase 2 delta subunit 1675945..1676640 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237475.1 CDS narV NC_016856.1 1676637 1677317 D similar to Escherichia coli cryptic nitrate reductase 2; gamma subunit (AAC74547.1); nitrate reductase 2 gamma subunit 1676637..1677317 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237476.1 CDS yddE NC_016856.1 1677423 1678316 D hypothetical protein in nhoA 5'region (SW:YDDE_SALTY); hypothetical protein 1677423..1678316 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237477.1 CDS nhoA NC_016856.1 1678352 1679197 R N-hydroxyarylamine O-acetyltransferase (SW:NHOA_SALTY); putative arylamine N-acetyltransferase complement(1678352..1679197) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237478.1 CDS STM14_1911 NC_016856.1 1679194 1679457 R hypothetical protein complement(1679194..1679457) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237479.1 CDS STM14_1912 NC_016856.1 1679481 1680113 R putative cytoplasmic protein complement(1679481..1680113) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237480.1 CDS STM14_1913 NC_016856.1 1680178 1680390 D hypothetical protein 1680178..1680390 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237481.1 CDS STM14_1914 NC_016856.1 1680335 1680472 R hypothetical protein complement(1680335..1680472) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237482.1 CDS STM14_1915 NC_016856.1 1680342 1680476 D hypothetical protein 1680342..1680476 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237483.1 CDS ansP NC_016856.1 1680626 1682119 D L-asparagine permease (L-asparagine transport protein) (SW:ANSP_SALTY); APC family; L-asparagine transport protein 1680626..1682119 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237484.1 CDS STM14_1917 NC_016856.1 1682196 1682417 R putative outer membrane lipoprotein complement(1682196..1682417) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237485.1 CDS STM14_1918 NC_016856.1 1682562 1683623 R similar to Escherichia coli putative receptor (AAC74534.1); hypothetical protein complement(1682562..1683623) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237486.1 CDS STM14_1919 NC_016856.1 1683664 1683783 R hypothetical protein complement(1683664..1683783) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237487.1 CDS yncD NC_016856.1 1683887 1686007 D similar to Escherichia coli putative outer membrane receptor for iron transport (AAC74533.1); putative outer membrane receptor 1683887..1686007 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237488.1 CDS yncC NC_016856.1 1686074 1686739 R GntR family; putative DNA-binding transcriptional regulator complement(1686074..1686739) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237489.1 CDS STM14_1922 NC_016856.1 1686850 1686969 D hypothetical protein 1686850..1686969 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237490.1 CDS STM14_1923 NC_016856.1 1686958 1687080 R hypothetical protein complement(1686958..1687080) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237491.1 CDS yncB NC_016856.1 1687073 1688143 R similar to Escherichia coli putative oxidoreductase (AAC74531.1); putative NADP-dependent oxidoreductase complement(1687073..1688143) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237492.1 CDS yncA NC_016856.1 1688322 1688837 D similar to Escherichia coli putative resistance protein (AAC74530.1); putative acyltransferase 1688322..1688837 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237493.1 CDS ydcZ NC_016856.1 1688837 1689286 D putative inner membrane protein 1688837..1689286 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237494.1 CDS ydcY NC_016856.1 1689291 1689524 R putative cytoplasmic protein complement(1689291..1689524) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237495.1 CDS srfA NC_016856.1 1689748 1691067 D SrfA (gi|8347258); ssrAB-activated gene; putative virulence protein 1689748..1691067 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237496.1 CDS srfB NC_016856.1 1691072 1694053 D SrfB (gi|8347259); ssrAB-activated gene; putative virulence protein 1691072..1694053 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237497.1 CDS srfC NC_016856.1 1694050 1696194 D SrfC (gi|8347260); contains predicted coiled-coil structure; ssrAB-activated gene; putative virulence protein 1694050..1696194 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237498.2 CDS ydcX NC_016856.1 1696239 1696421 R putative inner membrane protein complement(1696239..1696421) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237499.2 CDS STM14_1932 NC_016856.1 1696611 1696706 D hypothetical protein 1696611..1696706 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237500.1 CDS STM14_1933 NC_016856.1 1696703 1696807 D hypothetical protein 1696703..1696807 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237501.1 CDS ydcW NC_016856.1 1696811 1698235 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(1696811..1698235) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237502.1 CDS ydcR NC_016856.1 1698371 1699795 R similar to Escherichia coli multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system (AAC74521.1); GntR family; putative regulatory protein complement(1698371..1699795) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237503.1 CDS pdgL NC_016856.1 1699931 1700701 R D-alanyl-D-alanine dipeptidase for peptidoglycan digestion (gi|4585342); periplasmic dipeptidase precursor complement(1699931..1700701) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237504.1 CDS STM14_1937 NC_016856.1 1700960 1701190 R putative inner membrane protein complement(1700960..1701190) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237505.1 CDS ugtL NC_016856.1 1701223 1701621 R putative membrane protein UgtL (gi|4585341); similar to chitinase from Schizosaccharomyces; hypothetical protein complement(1701223..1701621) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237506.1 CDS STM14_1939 NC_016856.1 1701681 1701785 R hypothetical protein complement(1701681..1701785) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237507.1 CDS sifB NC_016856.1 1702158 1703108 D translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1702158..1703108 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237508.1 CDS yncJ NC_016856.1 1703382 1703612 D hypothetical protein 1703382..1703612 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237509.1 CDS ydcP NC_016856.1 1703613 1705577 R similar to Escherichia coli putative collagenase (AAC74517.1); putative collagenase complement(1703613..1705577) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237510.1 CDS ydcN NC_016856.1 1705656 1706192 R oxidoreductase; putative repressor complement(1705656..1706192) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237511.1 CDS STM14_1944 NC_016856.1 1706283 1707461 D similar to Escherichia coli putative membrane transport protein (AAC74515.1); putative benzoate membrane transport protein 1706283..1707461 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237512.1 CDS STM14_1945 NC_016856.1 1707515 1708183 R putative outer membrane lipoprotein complement(1707515..1708183) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237513.1 CDS tehB NC_016856.1 1708339 1708935 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(1708339..1708935) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237514.1 CDS tehA NC_016856.1 1708922 1709935 R similar to Escherichia coli tellurite resistance (AAC74511.1); TDT family; potassium-tellurite ethidium and proflavin transporter complement(1708922..1709935) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237515.1 CDS ydcK NC_016856.1 1710042 1711022 D involved in lipopolysaccharide biosynthesis; putative nucleoside-diphosphate-sugar pyrophosphorylase 1710042..1711022 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237516.1 CDS rimL NC_016856.1 1711019 1711558 R similar to Escherichia coli acetylase; acetylates N-terminal serine of 50S ribosomal subunit protein L7/L12 (AAC74509.1); ribosomal-protein-L7/L12-serine acetyltransferase complement(1711019..1711558) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237517.1 CDS STM14_1950 NC_016856.1 1711642 1711749 D hypothetical protein 1711642..1711749 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237518.1 CDS STM14_1951 NC_016856.1 1711775 1712893 D similar to Escherichia coli putative lyase/synthase (AAC77261.1); putative cellulase protein 1711775..1712893 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237519.1 CDS STM14_1952 NC_016856.1 1712890 1713171 D similar to Escherichia coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); putative PTS system enzymeIIB component 1712890..1713171 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237520.1 CDS STM14_1953 NC_016856.1 1713182 1714495 D similar to Escherichia coli putative PTS system enzyme IIC component (AAC77260.1); putative PTS system enzyme IIC component 1713182..1714495 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237521.1 CDS STM14_1954 NC_016856.1 1714509 1715315 D similar to Escherichia coli putative nucleoside triphosphatase (AAC77259.1); putative nucleoside triphosphatase 1714509..1715315 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237522.1 CDS STM14_1955 NC_016856.1 1715447 1715884 D similar to Escherichia coli putative PTS system enzyme II A component (AAC77258.1); putative sugar-specific PTS enzyme II 1715447..1715884 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237523.1 CDS STM14_1956 NC_016856.1 1715896 1716528 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1715896..1716528 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237524.1 CDS STM14_1957 NC_016856.1 1716544 1717335 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC77256.1); DeoR family; putative transcriptional repressor of sgc operon 1716544..1717335 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237525.1 CDS STM14_1958 NC_016856.1 1717335 1717772 D cryptic aminoglycoside resistance protein 1717335..1717772 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237526.1 CDS STM14_1959 NC_016856.1 1717819 1719021 R similar to Escherichia coli L-lactate dehydrogenase (AAC76629.1); putative oxidase complement(1717819..1719021) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237527.1 CDS STM14_1960 NC_016856.1 1719033 1719608 R hypothetical protein complement(1719033..1719608) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237528.1 CDS STM14_1961 NC_016856.1 1719701 1719814 D hypothetical protein 1719701..1719814 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237529.1 CDS mdoD NC_016856.1 1719804 1721459 R involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D complement(1719804..1721459) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237530.1 CDS STM14_1963 NC_016856.1 1721679 1723187 R putative carboxylesterase complement(1721679..1723187) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237531.1 CDS STM14_1964 NC_016856.1 1723236 1724579 R putative cytoplasmic protein complement(1723236..1724579) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237532.1 CDS ydcI NC_016856.1 1724872 1725795 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74504.1); LysR family; putative transcriptional regulator 1724872..1725795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237533.1 CDS trg NC_016856.1 1725856 1727481 R similar to Escherichia coli methyl-accepting chemotaxis protein III; ribose and galactose sensor receptor (AAC74503.1); methyl-accepting chemotaxis protein III complement(1725856..1727481) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237534.1 CDS STM14_1967 NC_016856.1 1727480 1727695 D hypothetical protein 1727480..1727695 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237535.1 CDS STM14_1968 NC_016856.1 1727650 1728768 R similar to Escherichia coli alcohol dehydrogenase class III; formaldehyde dehydrogenase; glutathione-dependent (AAC73459.1); alcohol dehydrogenase class III complement(1727650..1728768) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237536.1 CDS STM14_1969 NC_016856.1 1728800 1729075 R similar to Escherichia coli putative alpha helix chain (AAC73460.1); putative cytoplasmic protein complement(1728800..1729075) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237537.1 CDS STM14_1970 NC_016856.1 1729598 1729999 D putative dipicolinate reductase 1729598..1729999 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237538.1 CDS STM14_1971 NC_016856.1 1730128 1730844 R putative inner membrane protein complement(1730128..1730844) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237539.1 CDS STM14_1972 NC_016856.1 1731028 1731132 R hypothetical protein complement(1731028..1731132) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237540.1 CDS STM14_1973 NC_016856.1 1731115 1731225 D hypothetical protein 1731115..1731225 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237541.1 CDS sseJ NC_016856.1 1731270 1732496 D secreted effector J (gi|9931614); Salmonella translocated effector; regulated by SPI-2; secreted effector protein 1731270..1732496 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237542.1 CDS STM14_1975 NC_016856.1 1732617 1732961 R putative inner membrane protein complement(1732617..1732961) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237543.1 CDS STM14_1976 NC_016856.1 1733662 1733814 R hypothetical protein complement(1733662..1733814) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237544.1 CDS STM14_1977 NC_016856.1 1733868 1734629 D similar to Escherichia coli putative periplasmic binding transport protein (AAC74987.1); putative periplasmic binding protein 1733868..1734629 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237545.1 CDS STM14_1978 NC_016856.1 1734636 1735283 D similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); amino acid; putative ABC transporter permease 1734636..1735283 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237546.1 CDS STM14_1979 NC_016856.1 1735308 1736039 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC76303.1); putative ABC-type polar amino acid transport system ATPase component 1735308..1736039 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237547.1 CDS STM14_1980 NC_016856.1 1736036 1736716 D similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); putative ABC-type transport system membrane component 1736036..1736716 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237548.1 CDS STM14_1981 NC_016856.1 1736853 1738403 D putative inner membrane protein 1736853..1738403 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237549.1 CDS STM14_1982 NC_016856.1 1738867 1739529 D putative SAM-dependent methyltransferase 1738867..1739529 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237550.1 CDS cybB NC_016856.1 1739800 1740330 R B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 complement(1739800..1740330) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237551.1 CDS ydcF NC_016856.1 1740447 1741247 R putative inner membrane protein complement(1740447..1741247) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237552.1 CDS hrpA NC_016856.1 1741311 1745156 R involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA complement(1741311..1745156) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237553.1 CDS acpD NC_016856.1 1745414 1746019 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1745414..1746019 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237554.1 CDS STM14_1987 NC_016856.1 1746016 1746465 R putative inner membrane protein complement(1746016..1746465) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237555.1 CDS ydbL NC_016856.1 1746608 1746931 R hypothetical protein complement(1746608..1746931) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237556.1 CDS ynbE NC_016856.1 1746939 1747130 R putative outer membrane lipoprotein complement(1746939..1747130) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237557.1 CDS ydbH NC_016856.1 1747130 1749766 R hypothetical protein complement(1747130..1749766) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237558.1 CDS ldhA NC_016856.1 1750006 1750995 D Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 1750006..1750995 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237559.1 CDS hslJ NC_016856.1 1751106 1751516 D similar to Escherichia coli heat shock protein hslJ (AAC74461.1); heat-inducible protein 1751106..1751516 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237560.2 CDS STM14_1993 NC_016856.1 1751560 1751826 R putative cytoplasmic protein complement(1751560..1751826) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237561.1 CDS STM14_1994 NC_016856.1 1751742 1752041 D hypothetical protein 1751742..1752041 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237562.1 CDS nifJ NC_016856.1 1752102 1755626 D similar to Escherichia coli putative oxidoreductase; Fe-S subunit (AAC74460.1); putative pyruvate-flavodoxin oxidoreductase 1752102..1755626 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237563.1 CDS STM14_1996 NC_016856.1 1755685 1755894 R hypothetical protein complement(1755685..1755894) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237564.1 CDS ynaF NC_016856.1 1756108 1756542 D similar to Escherichia coli putative filament protein (AAC74458.1); putative universal stress protein 1756108..1756542 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237565.1 CDS STM14_1998 NC_016856.1 1756592 1756930 R similar to Escherichia coli methylviologen resistance (AAC73644.1); putative membrane transporter of cations complement(1756592..1756930) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237566.1 CDS STM14_1999 NC_016856.1 1757094 1757234 D Rac prophage; integrase 1757094..1757234 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237567.1 CDS ydaO NC_016856.1 1757286 1758221 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1757286..1758221 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237568.1 CDS dbpA NC_016856.1 1758265 1759638 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(1758265..1759638) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237569.1 CDS zntB NC_016856.1 1760125 1761108 R zinc transporter complement(1760125..1761108) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237570.1 CDS STM14_2003 NC_016856.1 1761254 1762408 R similar to Escherichia coli methyl-accepting chemotaxis protein I serine sensor receptor (AAC77311.1); similar to C-terminus of many MCPs; putative methyl-accepting chemotaxis protein complement(1761254..1762408) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237571.1 CDS STM14_2004 NC_016856.1 1762419 1762580 R hypothetical protein complement(1762419..1762580) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237572.1 CDS ydaL NC_016856.1 1762819 1763382 R contains putative Smr domain; hypothetical protein complement(1762819..1763382) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237573.1 CDS ogt NC_016856.1 1763640 1764155 D methylated-DNA protein-cysteine methyltransferase (SW:OGT_SALTY); O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1763640..1764155 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237574.1 CDS fnr NC_016856.1 1764351 1765103 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1764351..1765103 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237575.1 CDS ydaA NC_016856.1 1765254 1766201 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1765254..1766201 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237576.2 CDS ynaJ NC_016856.1 1766256 1766510 R putative inner membrane protein complement(1766256..1766510) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237577.1 CDS ynaI NC_016856.1 1766749 1767780 D putative integral membrane protein 1766749..1767780 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237578.1 CDS STM14_2011 NC_016856.1 1767866 1768468 R putative transcriptional regulator complement(1767866..1768468) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237579.1 CDS STM14_2012 NC_016856.1 1768512 1769198 D putative cytoplasmic protein 1768512..1769198 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237580.1 CDS STM14_2014 NC_016856.1 1769670 1770227 R similar to Escherichia coli thiol peroxidase (AAC74406.1); putative thiol peroxidase complement(1769670..1770227) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237581.1 CDS STM14_2015 NC_016856.1 1770326 1771156 R hypothetical protein complement(1770326..1771156) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237582.1 CDS STM14_2016 NC_016856.1 1771177 1773159 R similar to Escherichia coli putative factor (AAC74304.1); similar to invasin C of Yersinia; intimin; invasin-like protein complement(1771177..1773159) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237583.1 CDS STM14_2017 NC_016856.1 1773234 1774079 R putative lipoprotein complement(1773234..1774079) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894089.1 CDS STM14_2019 NC_016856.1 1775622 1776731 D hypothetical protein 1775622..1776731 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237584.2 CDS STM14_2020 NC_016856.1 1776945 1777181 R putative outer membrane lipoprotein complement(1776945..1777181) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237585.1 CDS STM14_2021 NC_016856.1 1777310 1777900 R AraC family; helix-turn-helix; putative regulatory protein complement(1777310..1777900) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237586.1 CDS STM14_2022 NC_016856.1 1777978 1778691 D similar to Escherichia coli putative oxidoreductase (AAC77206.1); oxidoreductase 1777978..1778691 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237587.1 CDS STM14_2023 NC_016856.1 1778782 1779651 R putative aldo/keto reductase complement(1778782..1779651) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237588.1 CDS STM14_2024 NC_016856.1 1779789 1779902 R hypothetical protein complement(1779789..1779902) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237589.1 CDS STM14_2025 NC_016856.1 1779925 1780830 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76546.1); LysR family; putative transcriptional regulator complement(1779925..1780830) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237590.1 CDS STM14_2026 NC_016856.1 1780949 1781878 D putative 2'-hydroxyisoflavone reductase 1780949..1781878 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237591.1 CDS mppA NC_016856.1 1781975 1783588 R similar to Escherichia coli putative transport periplasmic protein (AAC74411.1); negative regulator of mulitple antibiotic resistance; periplasmic murein tripeptide transport protein complement(1781975..1783588) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237592.1 CDS ycjI NC_016856.1 1783778 1784506 D similar to Escherichia coli putative carboxypeptidase (AAC74408.1); murein peptide amidase A 1783778..1784506 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237593.1 CDS ycjG NC_016856.1 1784481 1785446 R similar to Escherichia coli putative muconate cycloisomerase I (AAC74407.1); putative chloromuconate cycloisomerase complement(1784481..1785446) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237594.1 CDS tpx NC_016856.1 1785562 1786068 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1785562..1786068 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237595.1 CDS STM14_2031 NC_016856.1 1786154 1786342 D hypothetical protein 1786154..1786342 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237596.1 CDS tnpA_5 NC_016856.1 1786299 1786757 D transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 1786299..1786757 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237597.1 CDS tyrR NC_016856.1 1786870 1788411 R regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR complement(1786870..1788411) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237598.1 CDS ycjF NC_016856.1 1788559 1789620 R hypothetical protein complement(1788559..1789620) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237599.1 CDS ycjX NC_016856.1 1789617 1791020 R similar to Escherichia coli putative enzymes (AAC74403.1); putative ATPase complement(1789617..1791020) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237600.1 CDS pspE NC_016856.1 1791163 1791477 R similar to Escherichia coli phage shock protein (AAC74390.1); thiosulfate:cyanide sulfurtransferase complement(1791163..1791477) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237601.1 CDS pspD NC_016856.1 1791553 1791771 R similar to Escherichia coli phage shock protein (AAC74389.1); peripheral inner membrane phage-shock protein complement(1791553..1791771) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237602.1 CDS pspC NC_016856.1 1791794 1792153 R with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC complement(1791794..1792153) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237603.1 CDS pspB NC_016856.1 1792153 1792377 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(1792153..1792377) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237604.1 CDS pspA NC_016856.1 1792437 1793105 R involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA complement(1792437..1793105) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237605.1 CDS pspF NC_016856.1 1793276 1794256 D transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator 1793276..1794256 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237606.1 CDS sapA NC_016856.1 1794368 1796017 D peptide transport periplasmic protein SapA precursor (SW:SAPA_SALTY); ABC superfamily periplasmic protein; peptide transport protein 1794368..1796017 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237607.1 CDS sapB NC_016856.1 1796014 1796979 D peptide transport system permease protein SapB (SW:SAPB_SALTY); ABC superfamily membrane protein; peptide transport protein 1796014..1796979 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237608.1 CDS sapC NC_016856.1 1796966 1797856 D peptide transport system permease protein SapC (SW:SAPC_SALTY); ABC superfamily membrane protein; peptide transport protein 1796966..1797856 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237609.1 CDS sapD NC_016856.1 1797856 1798848 D peptide transport system atp-binding protein SapD (SW:SAPD_SALTY); ABC superfamily ATP-binding protein; peptide transport protein 1797856..1798848 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237610.1 CDS sapF NC_016856.1 1798850 1799656 D peptide transport system atp-binding protein SapF (SW:SAPF_SALTY); ABC superfamily ATP-binding protein; peptide transport protein 1798850..1799656 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237611.1 CDS STM14_2047 NC_016856.1 1799672 1800379 R putative diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein complement(1799672..1800379) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237612.1 CDS STM14_2048 NC_016856.1 1800491 1800637 R hypothetical protein complement(1800491..1800637) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237613.1 CDS STM14_2049 NC_016856.1 1800647 1800769 D hypothetical protein 1800647..1800769 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237614.1 CDS STM14_2050 NC_016856.1 1800846 1802219 R putative inner membrane protein complement(1800846..1802219) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237615.1 CDS STM14_2051 NC_016856.1 1802254 1802433 D putative e6 protein; hypothetical protein 1802254..1802433 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237616.1 CDS ycjE NC_016856.1 1802408 1802707 D hypothetical 10.4 kDa protein in fabI/envM 5'region (SW:YCJE_SALTY); putative cytoplasmic protein 1802408..1802707 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237617.1 CDS fabI NC_016856.1 1802825 1803613 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1802825..1803613 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237618.1 CDS STM14_2054 NC_016856.1 1803682 1803798 R hypothetical protein complement(1803682..1803798) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237619.1 CDS yciW NC_016856.1 1803813 1804946 D similar to Escherichia coli putative oxidoreductase (AAC74369.1); putative cytoplasmic protein 1803813..1804946 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237620.1 CDS rnb NC_016856.1 1805035 1806969 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1805035..1806969 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237621.1 CDS STM14_2057 NC_016856.1 1807079 1807216 D hypothetical protein 1807079..1807216 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237622.1 CDS yciR NC_016856.1 1807231 1809213 D c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1807231..1809213 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237623.1 CDS STM14_2059 NC_016856.1 1809302 1809514 D hypothetical protein 1809302..1809514 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237624.1 CDS yciT NC_016856.1 1809601 1810353 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC74366.1); DeoR family; putative regulatory protein 1809601..1810353 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237625.1 CDS STM14_2061 NC_016856.1 1810467 1810628 R hypothetical protein complement(1810467..1810628) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237626.1 CDS osmB NC_016856.1 1810612 1810830 D osmotically inducible lipoprotein B (SW:OSMB_SALTY); osmotically inducible; lipoprotein 1810612..1810830 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237627.1 CDS yciH NC_016856.1 1810950 1811276 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1810950..1811276) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237628.1 CDS pyrF NC_016856.1 1811276 1812013 R OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1811276..1812013) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237629.1 CDS STM14_2065 NC_016856.1 1812029 1812142 D hypothetical protein 1812029..1812142 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237630.1 CDS yciM NC_016856.1 1812204 1813373 R similar to Escherichia coli putative heat shock protein (AAC74362.1); hypothetical protein complement(1812204..1813373) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237631.1 CDS yciS NC_016856.1 1813380 1813688 R putative inner membrane protein complement(1813380..1813688) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237632.1 CDS pgpB NC_016856.1 1813838 1814602 R similar to Escherichia coli non-essential phosphatidylglycerophosphate phosphatase, membrane bound (AAC74360.1); phosphatidylglycerophosphatase B complement(1813838..1814602) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237633.1 CDS ribA NC_016856.1 1814798 1815388 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1814798..1815388 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237634.1 CDS acnA NC_016856.1 1815444 1818119 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1815444..1818119) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237635.1 CDS STM14_2071 NC_016856.1 1818504 1818674 R hypothetical protein complement(1818504..1818674) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237636.1 CDS cysB NC_016856.1 1819096 1820070 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(1819096..1820070) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237637.1 CDS STM14_2073 NC_016856.1 1820026 1820190 D hypothetical protein 1820026..1820190 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237638.1 CDS STM14_2074 NC_016856.1 1820225 1820401 R hypothetical protein complement(1820225..1820401) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237639.1 CDS topA NC_016856.1 1820481 1823078 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1820481..1823078) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237640.1 CDS STM14_2076 NC_016856.1 1823233 1823364 R hypothetical protein complement(1823233..1823364) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237641.1 CDS yciN NC_016856.1 1823481 1823732 D hypothetical protein 1823481..1823732 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237642.1 CDS sohB NC_016856.1 1823774 1824820 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(1823774..1824820) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237643.1 CDS STM14_2079 NC_016856.1 1824904 1825014 D hypothetical protein 1824904..1825014 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237644.1 CDS yciK NC_016856.1 1825058 1825819 D similar to Escherichia coli putative oxidoreductase (AAC74353.1); short chain dehydrogenase 1825058..1825819 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237645.1 CDS btuR NC_016856.1 1825816 1826406 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1825816..1826406 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237646.1 CDS yciL NC_016856.1 1826493 1827368 R catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B complement(1826493..1827368) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237647.1 CDS trpH NC_016856.1 1828097 1828978 R TrpH protein (SW:TRPH_SALTY); TrpR controlled transcriptional unit in the 5' upstream region of the trp operon; hypothetical protein complement(1828097..1828978) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237648.1 CDS trpL NC_016856.1 1829100 1829144 D trp operon leader peptide (SW:LPW_SALTY); trp operon leader peptide 1829100..1829144 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237649.1 CDS trpE NC_016856.1 1829239 1830801 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1829239..1830801 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237650.1 CDS trpD NC_016856.1 1830801 1832396 D TrpD; with Trp E catalyzes the formation of anthranilate from chorismate and glutamine, TrpE provides the glutamine amidotransferase activity; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase 1830801..1832396 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237651.1 CDS trpC NC_016856.1 1832400 1833758 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1832400..1833758 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237652.1 CDS trpB NC_016856.1 1833768 1834961 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1833768..1834961 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237653.1 CDS trpA NC_016856.1 1834961 1835767 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1834961..1835767 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237654.1 CDS yciG NC_016856.1 1836247 1836429 D putative cytoplasmic protein 1836247..1836429 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237655.1 CDS yciF NC_016856.1 1836519 1837022 D similar to Escherichia coli putative structural proteins (AAC74340.1); putative cytoplasmic protein 1836519..1837022 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237656.1 CDS yciE NC_016856.1 1837096 1837602 D putative cytoplasmic protein 1837096..1837602 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237657.1 CDS STM14_2094 NC_016856.1 1837622 1838500 D putative catalase (gi|7162108); putative catalase 1837622..1838500 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237658.1 CDS ompW NC_016856.1 1838582 1839220 R receptor for colicin S4; outer membrane protein W complement(1838582..1839220) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237659.1 CDS STM14_2096 NC_016856.1 1839558 1839962 D similar to Escherichia coli putative ferredoxin (AAC73391.1); putative ferredoxin 1839558..1839962 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237660.1 CDS yciC NC_016856.1 1839988 1840731 D hypothetical protein 1839988..1840731 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237661.1 CDS yciB NC_016856.1 1840788 1841327 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1840788..1841327 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237662.1 CDS yciA NC_016856.1 1841488 1841889 D YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1841488..1841889 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237663.2 CDS tonB NC_016856.1 1841949 1842686 R membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transporter complement(1841949..1842686) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237664.1 CDS yciI NC_016856.1 1842901 1843197 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1842901..1843197 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237665.1 CDS STM14_2102 NC_016856.1 1843241 1843414 R hypothetical protein complement(1843241..1843414) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237666.1 CDS cls NC_016856.1 1843557 1845017 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1843557..1845017 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894090.1 CDS yciU NC_016856.1 1845051 1845380 D dsDNA-mimic protein 1845051..1845380 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237667.1 CDS STM14_2105 NC_016856.1 1845428 1846264 R putative voltage-gated potassium channel complement(1845428..1846264) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237668.1 CDS oppF NC_016856.1 1846312 1847316 R oligopeptide transport ATP-binding protein; OppF (SW:OPPF_SALTY); ABC superfamily ATP-binding protein; oligopeptide transport protein complement(1846312..1847316) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237669.1 CDS oppD NC_016856.1 1847313 1848320 R oligopeptide transport ATP-binding protein OppD (SW:OPPD_SALTY); ABC superfamily ATP-binding protein; oligopeptide ABC transporter ATP-binding protein complement(1847313..1848320) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237670.1 CDS oppC NC_016856.1 1848332 1849240 R oligopeptide transport system permease protein OppC (SW:OPPC_SALTY); ABC superfamily membrane protein; oligopeptide transport protein complement(1848332..1849240) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237671.1 CDS oppB NC_016856.1 1849255 1850175 R oligopeptide transport system permease protein OppB (SW:OPPB_SALTY); ABC superfamily membrane protein; oligopeptide transporter permease complement(1849255..1850175) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237672.1 CDS oppA NC_016856.1 1850297 1851928 R periplasmic oligopeptide-binding protein precursor (SW:OPPA_SALTY); ABC superfamily periplasmic protein; contains chaperone properties; oligopeptide transport protein complement(1850297..1851928) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237673.1 CDS STM14_2111 NC_016856.1 1851996 1852310 D putative inner membrane protein 1851996..1852310 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237674.1 CDS ychE NC_016856.1 1852693 1853340 R similar to Escherichia coli putative channel protein (AAC74324.1); MarC family; hypothetical protein complement(1852693..1853340) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237675.1 CDS adhE NC_016856.1 1853817 1856495 D similar to Escherichia coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); multifunctional alcohol dehydrogenase AdhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1853817..1856495 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237676.1 CDS tdk_2 NC_016856.1 1856692 1857309 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(1856692..1857309) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237677.1 CDS STM14_2115 NC_016856.1 1857497 1857622 D hypothetical protein 1857497..1857622 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237678.1 CDS hns NC_016856.1 1857972 1858385 D DNA-binding protein H-NS; histone-like protein HLP-II; protein H1; protein B1 (SW:HNS_SALTY); HU; BH2; HD; NS; pleiotropic regulator; global DNA-binding transcriptional dual regulator H-NS 1857972..1858385 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237679.1 CDS STM14_2117 NC_016856.1 1858398 1858580 D hypothetical protein 1858398..1858580 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237680.1 CDS galU NC_016856.1 1858517 1859425 R together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(1858517..1859425) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237681.1 CDS hnr NC_016856.1 1859628 1860641 R similar to Escherichia coli Hnr protein (AAC74317.1); for protein turnover; involved in mouse virulence; response regulator of RpoS complement(1859628..1860641) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237682.1 CDS ychK NC_016856.1 1860732 1861637 R hypothetical protein complement(1860732..1861637) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237683.1 CDS ychJ NC_016856.1 1861748 1862206 D hypothetical protein 1861748..1862206 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237684.1 CDS purU NC_016856.1 1862257 1863099 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1862257..1863099 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237685.1 CDS STM14_2123 NC_016856.1 1863160 1863279 R hypothetical protein complement(1863160..1863279) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237686.1 CDS STM14_2127 NC_016856.1 1864415 1865944 R contains TPR repeats; hypothetical protein complement(1864415..1865944) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237687.1 CDS STM14_2128 NC_016856.1 1865980 1866144 D hypothetical protein 1865980..1866144 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237688.1 CDS narI NC_016856.1 1866186 1866863 R similar to Escherichia coli nitrate reductase 1; cytochrome b(NR); gamma subunit (AAC74311.1); nitrate reductase 1 subunit gamma complement(1866186..1866863) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237689.1 CDS narJ NC_016856.1 1866863 1867573 R similar to Escherichia coli nitrate reductase 1; delta subunit; assembly function (AAC74310.1); chaperone required for molybdenum cofactor assembly in nitrate reductase 1; nitrate reductase 1 subunit delta complement(1866863..1867573) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237690.1 CDS narH NC_016856.1 1867570 1869105 R similar to Escherichia coli nitrate reductase 1; FeS; beta subunit (AAC74309.1); nitrate reductase 1 subunit beta complement(1867570..1869105) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237691.1 CDS narG NC_016856.1 1869102 1872845 R similar to Escherichia coli nitrate reductase 1; alpha subunit (AAC74308.1); nitrate reductase 1 subunit alpha complement(1869102..1872845) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237692.1 CDS STM14_2133 NC_016856.1 1872924 1873043 D hypothetical protein 1872924..1873043 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237693.1 CDS narK NC_016856.1 1873233 1874630 R similar to Escherichia coli nitrite extrusion protein (AAC74307.1); MFS superfamily; nitrite extrusion protein complement(1873233..1874630) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237694.1 CDS STM14_2135 NC_016856.1 1874718 1874903 R hypothetical protein complement(1874718..1874903) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237695.1 CDS narX NC_016856.1 1874971 1876767 D similar to Escherichia coli nitrate/nitrate sensor histidine protein kinase acts on NarL regulator (AAC74306.1); in two component regulatory system; senses nitrate/nitrite; regulates anaerobic respiration and fermentation; nitrate/nitrite sensor protein NarX 1874971..1876767 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237696.1 CDS narL NC_016856.1 1876760 1877410 D two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1876760..1877410 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237697.1 CDS ychP NC_016856.1 1877411 1878835 R similar to Escherichia coli putative factor (AAC74304.1); hypothetical protein complement(1877411..1878835) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237698.1 CDS ychN NC_016856.1 1879012 1879365 D putative ACR involved in intracellular sulfur reduction; putative sulfur reduction protein 1879012..1879365 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237699.1 CDS chaB NC_016856.1 1879445 1879675 R in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator complement(1879445..1879675) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237700.1 CDS chaA NC_016856.1 1879942 1881042 D similar to Escherichia coli sodium-calcium/proton antiporter (AAC74300.1); CaCA family; calcium/sodium:proton antiporter 1879942..1881042 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237701.1 CDS kdsA NC_016856.1 1881096 1881950 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1881096..1881950) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237702.1 CDS ychA NC_016856.1 1881988 1882797 R putative transcriptional regulator complement(1881988..1882797) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237703.1 CDS sirC NC_016856.1 1882801 1883190 R regulation of invasion genes; (gi|4887121); putative transcriptional regulator complement(1882801..1883190) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237704.1 CDS hemK NC_016856.1 1883187 1884020 R HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1883187..1884020) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237705.1 CDS prfA NC_016856.1 1884020 1885102 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1884020..1885102) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237706.1 CDS hemA NC_016856.1 1885143 1886399 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1885143..1886399) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237707.1 CDS STM14_2148 NC_016856.1 1886567 1886695 R hypothetical protein complement(1886567..1886695) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237708.1 CDS lolB NC_016856.1 1886713 1887336 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1886713..1887336 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237709.1 CDS ipk NC_016856.1 1887333 1888184 D catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the mevalonate-independent pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1887333..1888184 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237710.1 CDS STM14_2151 NC_016856.1 1888181 1888351 R hypothetical protein complement(1888181..1888351) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237711.1 CDS STM14_2152 NC_016856.1 1888329 1888433 R hypothetical protein complement(1888329..1888433) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237712.1 CDS prsA NC_016856.1 1888450 1889397 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1888450..1889397 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237713.2 CDS ychM NC_016856.1 1889522 1891207 D putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 1889522..1891207 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237714.1 CDS ychH NC_016856.1 1891252 1891530 R YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein complement(1891252..1891530) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237715.1 CDS pth NC_016856.1 1891806 1892390 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1891806..1892390 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237716.1 CDS ychF NC_016856.1 1892507 1893598 D the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; translation-associated GTPase 1892507..1893598 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237717.1 CDS STM14_2158 NC_016856.1 1893588 1893701 R hypothetical protein complement(1893588..1893701) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237718.1 CDS STM14_2159 NC_016856.1 1893757 1895022 R putative cytoplasmic protein complement(1893757..1895022) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237719.1 CDS STM14_2160 NC_016856.1 1895293 1895421 R hypothetical protein complement(1895293..1895421) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237720.1 CDS STM14_2161 NC_016856.1 1895517 1896635 D similar to Escherichia coli hydrogenase-1 small subunit (AAC74057.1); hydrogenase-1 small subunit 1895517..1896635 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237721.1 CDS STM14_2162 NC_016856.1 1896632 1898425 D involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1896632..1898425 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237722.1 CDS STM14_2163 NC_016856.1 1898444 1899175 D similar to Escherichia coli probable Ni/Fe hydrogenase 1 b-type cytochrome subunit (AAC74059.1); hydrogenase 1 b-type cytochrome subunit 1898444..1899175 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237723.1 CDS STM14_2164 NC_016856.1 1899172 1899768 D HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1899172..1899768 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237724.1 CDS STM14_2165 NC_016856.1 1899758 1900162 D involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1899758..1900162 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237725.1 CDS STM14_2166 NC_016856.1 1900159 1901007 D similar to Escherichia coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); putative hydrogenase-1 protein 1900159..1901007 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237726.1 CDS STM14_2167 NC_016856.1 1901082 1902626 D similar to Escherichia coli probable third cytochrome oxidase subunit I (AAC74063.1); putative cytochrome oxidase subunit I 1901082..1902626 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237727.1 CDS STM14_2168 NC_016856.1 1902638 1903774 D similar to Escherichia coli probable third cytochrome oxidase subunit II (AAC74064.1); putative cytochrome oxidase subunit II 1902638..1903774 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237728.1 CDS STM14_2169 NC_016856.1 1903787 1903876 D hypothetical protein 1903787..1903876 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237729.1 CDS STM14_2170 NC_016856.1 1904220 1905545 D similar to Escherichia coli NADP-specific glutamate dehydrogenase (AAC74831.1); glutamate dehydrogenase-like protein 1904220..1905545 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237730.1 CDS STM14_2171 NC_016856.1 1905555 1905662 R hypothetical protein complement(1905555..1905662) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237731.1 CDS treA NC_016856.1 1905759 1907471 D periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1905759..1907471 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237732.1 CDS ymgE NC_016856.1 1907534 1907788 R putative transglycosylase-associated protein complement(1907534..1907788) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237733.1 CDS ycgR NC_016856.1 1907957 1908691 D putative inner membrane protein 1907957..1908691 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237734.1 CDS emtA NC_016856.1 1908705 1909316 R similar to Escherichia coli murein transglycosylase E (AAC74277.1); membrane-bound lytic murein transglycosylase E complement(1908705..1909316) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237735.1 CDS ldcA NC_016856.1 1909487 1910401 D catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1909487..1910401 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237736.1 CDS ycgO NC_016856.1 1910498 1912231 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1910498..1912231 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237737.1 CDS dadX NC_016856.1 1912294 1913364 R catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase complement(1912294..1913364) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237738.1 CDS dadA NC_016856.1 1913378 1914676 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(1913378..1914676) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237739.1 CDS STM14_2180 NC_016856.1 1914824 1914934 R hypothetical protein complement(1914824..1914934) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237740.1 CDS ycgB NC_016856.1 1915005 1916531 D similar to Escherichia coli putative sporulation protein (AAC74272.1); hypothetical protein 1915005..1916531 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237741.1 CDS fadR NC_016856.1 1916578 1917297 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(1916578..1917297) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237742.1 CDS nhaB NC_016856.1 1917517 1919061 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1917517..1919061 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237743.1 CDS dsbB NC_016856.1 1919203 1919733 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1919203..1919733 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237744.1 CDS STM14_2185 NC_016856.1 1919842 1920183 D putative cytoplasmic protein 1919842..1920183 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237745.1 CDS STM14_2186 NC_016856.1 1920255 1920428 R putative cytoplasmic protein complement(1920255..1920428) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237746.1 CDS STM14_2187 NC_016856.1 1920441 1920557 D hypothetical protein 1920441..1920557 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237747.1 CDS STM14_2188 NC_016856.1 1920620 1920757 R putative cytoplasmic protein complement(1920620..1920757) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237748.1 CDS STM14_2189 NC_016856.1 1920801 1920899 R hypothetical protein complement(1920801..1920899) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237749.1 CDS ycgN NC_016856.1 1921109 1921555 R hypothetical protein complement(1921109..1921555) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237750.1 CDS ycgM NC_016856.1 1921648 1922307 R similar to Escherichia coli putative isomerase (AAC74264.1); FAA; hypothetical protein complement(1921648..1922307) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237751.1 CDS ycgL NC_016856.1 1922357 1922689 R putative cytoplasmic protein complement(1922357..1922689) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237752.1 CDS minC NC_016856.1 1922776 1923483 D blocks the formation of polar Z-ring septums; septum formation inhibitor 1922776..1923483 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237753.1 CDS minD NC_016856.1 1923507 1924319 D ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1923507..1924319 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237754.1 CDS minE NC_016856.1 1924323 1924589 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1924323..1924589 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237755.1 CDS rnd NC_016856.1 1924711 1925838 R similar to Escherichia coli RNase D; processes tRNA precursor (AAC74874.1); ribonuclease D complement(1924711..1925838) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237756.1 CDS tnpA_6 NC_016856.1 1925975 1926433 R transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase complement(1925975..1926433) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237757.1 CDS STM14_2198 NC_016856.1 1926390 1926578 R hypothetical protein complement(1926390..1926578) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237758.1 CDS fadD NC_016856.1 1926624 1928309 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1926624..1928309) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237759.1 CDS STM14_2200 NC_016856.1 1928329 1928535 D hypothetical protein 1928329..1928535 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237760.1 CDS slp NC_016856.1 1928514 1929095 R similar to Escherichia coli putative outer membrane protein (AAC74876.1); putative outer membrane protein complement(1928514..1929095) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237761.1 CDS yeaZ NC_016856.1 1929167 1929862 R putative molecular chaperone complement(1929167..1929862) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237762.1 CDS yoaA NC_016856.1 1929920 1931830 R similar to Escherichia coli putative enzyme (AAC74878.1); putative DNA helicase complement(1929920..1931830) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237763.1 CDS yoaB NC_016856.1 1931961 1932305 D putative translation initiation inhibitor 1931961..1932305 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237764.1 CDS yoaH NC_016856.1 1932311 1932490 R hypothetical protein in fadD-pabB intergenic region (SW:YOAH_SALTY); hypothetical protein complement(1932311..1932490) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237765.1 CDS pabB NC_016856.1 1932571 1933935 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 1932571..1933935 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237766.1 CDS yeaB NC_016856.1 1933939 1934517 D hypothetical protein in pabB-sdaA intergenic region (SW:YEAB_SALTY); hypothetical protein 1933939..1934517 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237767.1 CDS sdaA NC_016856.1 1934781 1936145 D similar to Escherichia coli L-serine deaminase (AAC74884.1); L-serine deaminase I/L-threonine deaminase I 1934781..1936145 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237768.2 CDS STM14_2209 NC_016856.1 1936283 1937884 D diguanylate cyclase 1936283..1937884 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237769.1 CDS yoaE NC_016856.1 1937906 1939465 R similar to Escherichia coli putative transport protein (AAC74886.1); putative inner membrane protein complement(1937906..1939465) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237770.1 CDS STM14_2211 NC_016856.1 1939453 1939788 R putative cytoplasmic protein complement(1939453..1939788) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237771.1 CDS manX NC_016856.1 1939938 1940906 D similar to Escherichia coli PTS enzyme IIAB; mannose-specific (AAC74887.1); mannose-specific enzyme IIAB 1939938..1940906 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237772.1 CDS manY NC_016856.1 1940959 1941759 D similar to Escherichia coli PTS enzyme IIC; mannose-specific (AAC74888.1); mannose-specific enzyme IIC 1940959..1941759 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237773.1 CDS manZ NC_016856.1 1941763 1942623 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; mannose-specific PTS system protein IID 1941763..1942623 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237774.1 CDS STM14_2215 NC_016856.1 1942681 1943139 D hypothetical protein 1942681..1943139 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237775.1 CDS yebN NC_016856.1 1943495 1944115 D membrane protein YebN; hypothetical protein 1943495..1944115 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237776.1 CDS rrmA NC_016856.1 1944112 1944921 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A complement(1944112..1944921) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237777.1 CDS STM14_2218 NC_016856.1 1944987 1946732 R similar to Escherichia coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); putative penicillin-binding protein 3 complement(1944987..1946732) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237778.1 CDS STM14_2219 NC_016856.1 1946749 1946859 R hypothetical protein complement(1946749..1946859) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237779.1 CDS cspC NC_016856.1 1946952 1947161 R cold shock-like protein CspC (SW:CSPC_SALTY); multicopy suppresses mukB mutants; putative regulator; cold shock-like protein CspC complement(1946952..1947161) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237780.1 CDS yobF NC_016856.1 1947174 1947317 R putative cytoplasmic protein complement(1947174..1947317) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237781.1 CDS STM14_2222 NC_016856.1 1947434 1947541 D hypothetical protein 1947434..1947541 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237782.1 CDS STM14_2223 NC_016856.1 1947556 1947696 D hypothetical protein 1947556..1947696 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237783.1 CDS STM14_2224 NC_016856.1 1947624 1947740 R hypothetical protein complement(1947624..1947740) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237784.1 CDS STM14_2225 NC_016856.1 1947966 1948253 R putative periplasmic protein; hypothetical protein complement(1947966..1948253) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237785.1 CDS yobG NC_016856.1 1948324 1948467 R hypothetical protein complement(1948324..1948467) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237786.1 CDS STM14_2227 NC_016856.1 1948625 1948864 D hypothetical protein 1948625..1948864 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237787.1 CDS kdgR NC_016856.1 1949076 1949867 R similar to Escherichia coli putative regulator (AAC74897.1); IclR family; putative transcriptional repressor complement(1949076..1949867) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237788.1 CDS STM14_2229 NC_016856.1 1949871 1949978 R hypothetical protein complement(1949871..1949978) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237789.1 CDS STM14_2230 NC_016856.1 1950043 1951416 D similar to Escherichia coli putative transport protein (AAC74898.1); putative transport protein 1950043..1951416 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237790.1 CDS htpX NC_016856.1 1951464 1952345 R putative metalloprotease; heat shock protein HtpX complement(1951464..1952345) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237791.1 CDS prc NC_016856.1 1952539 1954587 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(1952539..1954587) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237792.1 CDS proQ NC_016856.1 1954607 1955293 R affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector complement(1954607..1955293) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237793.1 CDS yebR NC_016856.1 1955391 1955975 R contains putative GAF domain; putative nucleotide-binding protein complement(1955391..1955975) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237794.1 CDS yebS NC_016856.1 1956017 1957300 D putative inner membrane protein 1956017..1957300 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237795.1 CDS STM14_2236 NC_016856.1 1957263 1959902 D putative inner membrane protein 1957263..1959902 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237796.1 CDS yebU NC_016856.1 1959980 1961419 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1959980..1961419 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237797.1 CDS STM14_2238 NC_016856.1 1961391 1961522 D hypothetical protein 1961391..1961522 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237798.1 CDS STM14_2239 NC_016856.1 1961534 1961773 D putative cytoplasmic protein 1961534..1961773 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237799.1 CDS yebW NC_016856.1 1961884 1962075 D putative inner membrane lipoprotein 1961884..1962075 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237800.1 CDS pphA NC_016856.1 1962094 1962762 R Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 complement(1962094..1962762) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237801.1 CDS STM14_2242 NC_016856.1 1962968 1963132 R putative inner membrane protein complement(1962968..1963132) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237802.1 CDS STM14_2243 NC_016856.1 1963183 1963311 D hypothetical protein 1963183..1963311 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237803.1 CDS sopE2 NC_016856.1 1963417 1964139 R SopE2 (gi|9651642); invasion-associated protein; secreted by SPI-1; interacts with chaperone InvB; guanine nucleotide exchange factor for Cdc42; activates Cdc42 which results in actin cytoskeleton rearrangements and internalization; type III-secreted effector protein complement(1963417..1964139) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237804.1 CDS STM14_2245 NC_016856.1 1964429 1964551 D hypothetical protein 1964429..1964551 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237805.1 CDS STM14_2246 NC_016856.1 1964644 1964787 R hypothetical protein complement(1964644..1964787) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237806.1 CDS STM14_2247 NC_016856.1 1964823 1965218 D putative cytoplasmic protein 1964823..1965218 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237807.1 CDS STM14_2248 NC_016856.1 1965548 1966024 D hypothetical protein 1965548..1966024 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237808.1 CDS STM14_2249 NC_016856.1 1966412 1966831 R putative acetyltransferase complement(1966412..1966831) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237809.1 CDS STM14_2250 NC_016856.1 1966960 1967154 R hypothetical protein complement(1966960..1967154) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237810.1 CDS STM14_2251 NC_016856.1 1967201 1967470 D putative cytoplasmic protein 1967201..1967470 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237811.1 CDS STM14_2252 NC_016856.1 1967603 1967776 D putative cytoplasmic protein 1967603..1967776 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894091.1 CDS STM14_06230 NC_016856.1 1968259 1969116 R hypothetical protein complement(1968259..1969116) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894092.1 CDS STM14_2254 NC_016856.1 1969279 1969608 D hypothetical protein 1969279..1969608 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237812.1 CDS STM14_2255 NC_016856.1 1970094 1970294 R hypothetical protein complement(1970094..1970294) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237813.1 CDS pagO NC_016856.1 1970912 1971826 D PagO protein (SW:PAGO_SALTY); PhoPQ-activated gene; integral membrane protein 1970912..1971826 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237814.1 CDS STM14_2257 NC_016856.1 1971959 1972117 D putative inner membrane protein 1971959..1972117 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237815.1 CDS STM14_2258 NC_016856.1 1972127 1972741 D putative inner membrane protein 1972127..1972741 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237816.1 CDS STM14_2260 NC_016856.1 1973190 1973366 R hypothetical protein complement(1973190..1973366) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237817.1 CDS STM14_2261 NC_016856.1 1973229 1973375 D hypothetical protein 1973229..1973375 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237818.1 CDS STM14_2263 NC_016856.1 1973981 1974151 R hypothetical protein complement(1973981..1974151) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237819.1 CDS STM14_2264 NC_016856.1 1974277 1974393 D tail fiber assembly protein 1974277..1974393 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237820.1 CDS pagK NC_016856.1 1974584 1974784 D PhoPQ-activated gene (gi|2582047); PagK 1974584..1974784 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237821.1 CDS mig-3 NC_016856.1 1974881 1975939 R phage side tail fiber assembly protein complement(1974881..1975939) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237822.1 CDS STM14_2267 NC_016856.1 1975917 1976180 R hypothetical protein complement(1975917..1976180) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237823.1 CDS STM14_2268 NC_016856.1 1976235 1976423 D hypothetical protein 1976235..1976423 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237824.1 CDS STM14_2269 NC_016856.1 1976488 1976655 D lytic enzyme 1976488..1976655 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237825.1 CDS STM14_2270 NC_016856.1 1976705 1976878 D hypothetical protein 1976705..1976878 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237826.1 CDS STM14_2271 NC_016856.1 1976808 1976927 D hypothetical protein 1976808..1976927 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237827.1 CDS STM14_2272 NC_016856.1 1976912 1977445 R phage-tail assembly-like protein complement(1976912..1977445) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237828.1 CDS STM14_2273 NC_016856.1 1977499 1977786 R hypothetical protein complement(1977499..1977786) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237829.1 CDS STM14_2274 NC_016856.1 1977760 1978413 D exoVIII; similar to Escherichia coli exonuclease VIII; ds DNA exonuclease; 5'-3' specific (AAC74432.1); RecE-like protein 1977760..1978413 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894093.1 CDS STM14_2275 NC_016856.1 1978431 1979327 D integrase 1978431..1979327 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237830.1 CDS STM14_2276 NC_016856.1 1979312 1979440 R hypothetical protein complement(1979312..1979440) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237831.1 CDS STM14_2277 NC_016856.1 1979524 1979643 R putative cytoplasmic protein complement(1979524..1979643) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237832.1 CDS STM14_2278 NC_016856.1 1979701 1980054 R putative periplasmic protein; hypothetical protein complement(1979701..1980054) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237833.1 CDS STM14_2279 NC_016856.1 1980071 1980946 R similar to Escherichia coli putative resistance protein (AAC74910.1); putative inner membrane protein complement(1980071..1980946) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237834.1 CDS yobA NC_016856.1 1980947 1981321 R similar to CopC; hypothetical protein complement(1980947..1981321) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237835.1 CDS holE NC_016856.1 1981459 1981689 D similar to Escherichia coli DNA polymerase III theta subunit (AAC74912.1); DNA polymerase III subunit theta 1981459..1981689 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237836.1 CDS STM14_2282 NC_016856.1 1981797 1982453 D putative amidohydrolase 1981797..1982453 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237837.1 CDS exoX NC_016856.1 1982477 1983175 D 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1982477..1983175 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237838.1 CDS ptrB NC_016856.1 1983210 1985261 R PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 complement(1983210..1985261) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237839.1 CDS yebE NC_016856.1 1985474 1986133 R putative inner membrane protein complement(1985474..1986133) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237840.1 CDS yebF NC_016856.1 1986227 1986580 R secreted protein; unknown function; hypothetical protein complement(1986227..1986580) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237841.1 CDS yebG NC_016856.1 1986648 1986938 R in SOS regulon; dependent on cyclic AMP and H-NS; DNA damage-inducible protein YebG complement(1986648..1986938) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237842.1 CDS purT NC_016856.1 1987069 1988247 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1987069..1988247 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237843.1 CDS eda NC_016856.1 1988347 1988988 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(1988347..1988988) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237844.1 CDS edd NC_016856.1 1989026 1990837 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(1989026..1990837) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237845.1 CDS STM14_2291 NC_016856.1 1990827 1990985 R hypothetical protein complement(1990827..1990985) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237846.1 CDS zwf NC_016856.1 1991072 1992547 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(1991072..1992547) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237847.1 CDS STM14_2293 NC_016856.1 1992662 1992787 D hypothetical protein 1992662..1992787 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237848.1 CDS STM14_2294 NC_016856.1 1992755 1992874 R hypothetical protein complement(1992755..1992874) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237849.1 CDS yebK NC_016856.1 1992889 1993758 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1992889..1993758 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237850.1 CDS pykA NC_016856.1 1993882 1995324 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1993882..1995324 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237851.1 CDS msbB NC_016856.1 1995397 1996368 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(1995397..1996368) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237852.1 CDS STM14_2298 NC_016856.1 1996367 1996594 D hypothetical protein 1996367..1996594 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237853.1 CDS yebA NC_016856.1 1996485 1997804 R hypothetical protein complement(1996485..1997804) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237854.1 CDS znuA NC_016856.1 1997820 1998764 R involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein complement(1997820..1998764) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237855.1 CDS znuC NC_016856.1 1998843 1999598 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 1998843..1999598 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237856.1 CDS znuB NC_016856.1 1999595 2000380 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 1999595..2000380 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237857.1 CDS ruvB NC_016856.1 2000459 2001469 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA duringbranch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase B complement(2000459..2001469) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237858.1 CDS ruvA NC_016856.1 2001478 2002089 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase motor protein complement(2001478..2002089) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237859.1 CDS STM14_2305 NC_016856.1 2002147 2002269 D hypothetical protein 2002147..2002269 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237860.1 CDS STM14_2306 NC_016856.1 2002264 2002389 R hypothetical protein complement(2002264..2002389) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237861.1 CDS yebB NC_016856.1 2004031 2004630 D hypothetical protein 2004031..2004630 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237862.1 CDS ruvC NC_016856.1 2004632 2005153 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2004632..2005153) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237863.1 CDS yebC NC_016856.1 2005190 2005930 R hypothetical protein complement(2005190..2005930) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237864.1 CDS ntpA NC_016856.1 2005960 2006412 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(2005960..2006412) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237865.1 CDS aspS NC_016856.1 2006515 2008287 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2006515..2008287) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237866.1 CDS STM14_2313 NC_016856.1 2008446 2008562 D hypothetical protein 2008446..2008562 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237867.1 CDS yecD NC_016856.1 2008612 2009178 D hypothetical protein 2008612..2009178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237868.1 CDS yecE NC_016856.1 2009175 2009993 D hypothetical protein 2009175..2009993 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237869.1 CDS yecN NC_016856.1 2010046 2010441 D putative inner membrane protein 2010046..2010441 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237870.1 CDS yecO NC_016856.1 2010482 2011225 D putative SAM-dependent methyltransferase 2010482..2011225 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237871.1 CDS yecP NC_016856.1 2011222 2012193 D similar to Escherichia coli putative enzyme (AAC74941.1); hypothetical protein 2011222..2012193 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237872.1 CDS cutC NC_016856.1 2012429 2013175 R similar to Escherichia coli copper homeostasis protein (AAC74944.1); copper homeostasis protein CutC complement(2012429..2013175) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237873.1 CDS yecM NC_016856.1 2013195 2013764 R hypothetical protein complement(2013195..2013764) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237874.1 CDS STM14_2321 NC_016856.1 2013869 2013985 D hypothetical protein 2013869..2013985 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237875.1 CDS argS NC_016856.1 2014001 2015734 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2014001..2015734 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237876.1 CDS STM14_2323 NC_016856.1 2015793 2015897 D hypothetical protein 2015793..2015897 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237877.1 CDS STM14_2324 NC_016856.1 2015923 2017794 D penicillin-binding protein 2; PBP-2 (SW:PBP2_SALTY); putative penicillin-binding protein 2015923..2017794 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237878.1 CDS STM14_2325 NC_016856.1 2017848 2018987 R putative cytoplasmic protein complement(2017848..2018987) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237879.1 CDS flhE NC_016856.1 2019224 2019616 R flagellar protein FlhE precursor (SW:FLHE_SALTY); flagellar protein complement(2019224..2019616) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237880.1 CDS flhA NC_016856.1 2019616 2021694 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2019616..2021694) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237881.1 CDS flhB NC_016856.1 2021687 2022838 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(2021687..2022838) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237882.1 CDS STM14_2329 NC_016856.1 2022930 2023187 D hypothetical protein 2022930..2023187 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237883.1 CDS cheZ NC_016856.1 2023032 2023676 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ complement(2023032..2023676) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237884.1 CDS cheY NC_016856.1 2023687 2024076 R chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY complement(2023687..2024076) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237885.1 CDS cheB NC_016856.1 2024094 2025143 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(2024094..2025143) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237886.1 CDS cheR NC_016856.1 2025140 2026006 R methylates the MCP; chemotaxis methyltransferase CheR complement(2025140..2026006) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237887.2 CDS cheM NC_016856.1 2026160 2027821 R methyl-accepting chemotaxis protein II; MCP-II (SW:MCP2_SALTY); aspartate sensor-receptor; methyl accepting chemotaxis protein II complement(2026160..2027821) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237888.1 CDS cheW NC_016856.1 2028058 2028561 R chemotaxis protein CheW (SW:CHEW_SALTY); regulation; couples CheA histidine kinase to transducers; purine-binding chemotaxis protein complement(2028058..2028561) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237889.1 CDS cheA NC_016856.1 2028582 2030597 R chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA complement(2028582..2030597) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237890.1 CDS motB NC_016856.1 2030602 2031531 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(2030602..2031531) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237891.1 CDS motA NC_016856.1 2031528 2032415 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(2031528..2032415) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237892.1 CDS STM14_2339 NC_016856.1 2032400 2032531 R hypothetical protein complement(2032400..2032531) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237893.1 CDS flhC NC_016856.1 2032540 2033118 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC complement(2032540..2033118) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237894.1 CDS flhD NC_016856.1 2033121 2033471 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD complement(2033121..2033471) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237895.1 CDS STM14_2342 NC_016856.1 2033684 2033827 R hypothetical protein complement(2033684..2033827) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237896.1 CDS STM14_2343 NC_016856.1 2034145 2034261 D hypothetical protein 2034145..2034261 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237897.1 CDS yecG NC_016856.1 2034258 2034686 D ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspC 2034258..2034686 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237898.1 CDS otsA NC_016856.1 2034704 2036125 R similar to Escherichia coli trehalose-6-phosphate synthase (AAC74966.1); trehalose-6-phosphate synthase complement(2034704..2036125) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237899.2 CDS otsB NC_016856.1 2036100 2036903 R biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase complement(2036100..2036903) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237900.1 CDS araH NC_016856.1 2037537 2038094 R similar to Escherichia coli 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis (AAC73527.1); putative intracellular protease/amidase complement(2037537..2038094) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237901.1 CDS STM14_2349 NC_016856.1 2038156 2038305 D hypothetical protein 2038156..2038305 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237902.1 CDS ftnB NC_016856.1 2038645 2039148 D similar to Escherichia coli ferritin-like protein (AAC74972.1); ferritin-like protein 2038645..2039148 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237903.1 CDS STM14_2351 NC_016856.1 2039327 2039965 R hypothetical protein complement(2039327..2039965) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237904.1 CDS STM14_2352 NC_016856.1 2040221 2040556 D putative outer membrane lipoprotein 2040221..2040556 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237905.1 CDS ftn NC_016856.1 2040796 2041293 D cytoplasmic iron storage protein; ferritin 2040796..2041293 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237906.1 CDS yecH NC_016856.1 2041339 2041578 R putative cytoplasmic protein complement(2041339..2041578) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237907.1 CDS tyrP NC_016856.1 2041805 2043016 D similar to Escherichia coli tyrosine-specific transport system (AAC74977.1); HAAAP family; tyrosine-specific transport protein 2041805..2043016 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237908.1 CDS yecA NC_016856.1 2043091 2043756 R similar to the C-terminal domain of SecA; hypothetical protein complement(2043091..2043756) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237909.1 CDS STM14_2357 NC_016856.1 2043994 2044320 R putative glucose-6-phosphate dehydrogenase complement(2043994..2044320) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237910.1 CDS STM14_2358 NC_016856.1 2044533 2045972 R putative cell wall-associated hydrolase complement(2044533..2045972) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237911.1 CDS STM14_2359 NC_016856.1 2046185 2046517 R putative inner membrane protein complement(2046185..2046517) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237912.1 CDS pgsA NC_016856.1 2047218 2047766 R similar to Escherichia coli phosphatidylglycerophosphate synthetase/CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase (AAC74979.1); phosphatidylglycerophosphate synthetase complement(2047218..2047766) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237913.1 CDS uvrC NC_016856.1 2047823 2049655 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2047823..2049655) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237914.1 CDS uvrY NC_016856.1 2049652 2050308 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(2049652..2050308) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237915.1 CDS STM14_2366 NC_016856.1 2050620 2050775 D putative inner membrane protein 2050620..2050775 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237916.1 CDS yecF NC_016856.1 2050772 2050996 D hypothetical protein 2050772..2050996 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237917.1 CDS sdiA NC_016856.1 2051063 2051785 R regulates genes involved in cell division; DNA-binding transcriptional activator SdiA complement(2051063..2051785) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237918.1 CDS yecC NC_016856.1 2052017 2052769 R similar to Escherichia coli putative ATP-binding component of a transport system (AAC74984.1); putative amino-acid ABC transporter ATP-binding protein YecC complement(2052017..2052769) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237919.1 CDS yecS NC_016856.1 2052766 2053434 R similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); putative ABC-type amino acid transporter permease component complement(2052766..2053434) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237920.1 CDS yedO NC_016856.1 2053455 2054441 R catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase complement(2053455..2054441) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237921.1 CDS fliY NC_016856.1 2054595 2055395 R similar to Escherichia coli putative periplasmic binding transport protein (AAC74987.1); cystine transporter subunit complement(2054595..2055395) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237922.1 CDS fliZ NC_016856.1 2055542 2056093 R expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; protein FliZ complement(2055542..2056093) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237923.1 CDS fliA NC_016856.1 2056152 2056871 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(2056152..2056871) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237924.1 CDS tnpA_7 NC_016856.1 2057140 2057649 R transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 complement(2057140..2057649) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237925.1 CDS STM14_2376 NC_016856.1 2057555 2057743 R hypothetical protein complement(2057555..2057743) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237926.1 CDS fliB NC_016856.1 2057779 2058984 R N-methylation of lysine residues in flagellin (SW:FLIB_SALTY); lysine-N-methylase complement(2057779..2058984) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237927.1 CDS fliC NC_016856.1 2059063 2060550 R structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin complement(2059063..2060550) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237928.1 CDS STM14_2379 NC_016856.1 2060568 2060705 R hypothetical protein complement(2060568..2060705) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237929.1 CDS fliD NC_016856.1 2060807 2062210 D involved in flagellin assembly; flagellar capping protein 2060807..2062210 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237930.1 CDS fliS NC_016856.1 2062225 2062632 D flagellin specific chaperone; flagellar protein FliS 2062225..2062632 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237931.1 CDS fliT NC_016856.1 2062632 2063000 D binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2062632..2063000 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237932.1 CDS amyA NC_016856.1 2063072 2064556 D converts 1,4-alpha-D-glucans to maltodextrin; alpha-amylase 2063072..2064556 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237933.1 CDS yedD NC_016856.1 2064596 2065021 R hypothetical 15.5 kDa protein in amyA-fliE intergenic region (SW:YEDD_SALTY); hypothetical protein complement(2064596..2065021) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237934.1 CDS yedE NC_016856.1 2065147 2066412 D hypothetical 44.2 kDa protein in amyA-fliE intergenic region (SW:YEDE_SALTY); component of transport system; putative inner membrane protein 2065147..2066412 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237935.1 CDS yedF NC_016856.1 2066409 2066642 D hypothetical 8.6 kDa protein in amyA-fliE intergenic region; ORF 9 (SW:YEDF_ECOLI); hypothetical protein 2066409..2066642 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237936.1 CDS STM14_2387 NC_016856.1 2066907 2067293 D putative 50S ribosomal protein 2066907..2067293 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237937.1 CDS fliE NC_016856.1 2067413 2067727 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(2067413..2067727) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237938.1 CDS STM14_2389 NC_016856.1 2067774 2067902 R hypothetical protein complement(2067774..2067902) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237939.1 CDS fliF NC_016856.1 2067944 2069626 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2067944..2069626 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237940.1 CDS fliG NC_016856.1 2069619 2070614 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2069619..2070614 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237941.1 CDS fliH NC_016856.1 2070607 2071314 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2070607..2071314 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237942.1 CDS fliI NC_016856.1 2071314 2072684 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2071314..2072684 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237943.1 CDS fliJ NC_016856.1 2072706 2073149 D rod/hook and filament chaperone; flagellar biosynthesis chaperone 2072706..2073149 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237944.1 CDS fliK NC_016856.1 2073146 2074363 D flagellar hook-length control protein (SW:FLIK_SALTY); flagellar hook-length control protein 2073146..2074363 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237945.1 CDS fliL NC_016856.1 2074468 2074935 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2074468..2074935 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237946.1 CDS fliM NC_016856.1 2074940 2075944 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2074940..2075944 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237947.1 CDS fliN NC_016856.1 2075941 2076354 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2075941..2076354 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237948.1 CDS fliO NC_016856.1 2076354 2076731 D with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 2076354..2076731 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237949.1 CDS fliP NC_016856.1 2076731 2077468 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2076731..2077468 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237950.1 CDS fliQ NC_016856.1 2077478 2077747 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2077478..2077747 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237951.1 CDS fliR NC_016856.1 2077756 2078550 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2077756..2078550 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237952.1 CDS rcsA NC_016856.1 2078832 2079455 D positive transcriptional regulator of capsular/exo-polysaccharide synthesis; LuxR/UhpA family (SW:RCSA_SALTY); colanic acid capsular biosynthesis activation protein A 2078832..2079455 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237953.1 CDS dsrB NC_016856.1 2079494 2079688 R downstream region B; regulated by DsrA and HNS, under control of RpoS; hypothetical protein complement(2079494..2079688) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237954.1 CDS yodD NC_016856.1 2079817 2080044 D putative cytoplasmic protein 2079817..2080044 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237955.1 CDS yedP NC_016856.1 2080354 2081169 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2080354..2081169 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237956.1 CDS STM14_2408 NC_016856.1 2081148 2082860 R putative inner membrane protein complement(2081148..2082860) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237957.2 CDS STM14_2409 NC_016856.1 2083025 2083210 R putative cytoplasmic protein complement(2083025..2083210) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237958.1 CDS yedI NC_016856.1 2083287 2084198 R hypothetical protein complement(2083287..2084198) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237959.1 CDS STM14_2411 NC_016856.1 2084253 2084468 D hypothetical protein 2084253..2084468 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237960.1 CDS yedA NC_016856.1 2084374 2085294 D similar to Escherichia coli putative transmembrane subunit (AAC75025.1); hypothetical protein 2084374..2085294 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237961.1 CDS vsr NC_016856.1 2085283 2085753 R similar to Escherichia coli DNA mismatch endonuclease patch repair protein (AAC75026.1); patch repair protein; DNA mismatch endonuclease complement(2085283..2085753) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237962.1 CDS dcm NC_016856.1 2085734 2087164 R similar to Escherichia coli DNA cytosine methylase (AAC75027.1); DNA cytosine methylase complement(2085734..2087164) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237963.1 CDS yedJ NC_016856.1 2087238 2087933 R hypothetical protein complement(2087238..2087933) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237964.1 CDS STM14_2416 NC_016856.1 2088025 2088324 R putative inner membrane protein complement(2088025..2088324) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237965.1 CDS STM14_2417 NC_016856.1 2088843 2088962 D hypothetical protein 2088843..2088962 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237966.1 CDS ompS NC_016856.1 2088974 2090170 D similar to Escherichia coli putative outer membrane protein (AAC74459.1); putative porin 2088974..2090170 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237967.1 CDS STM14_2419 NC_016856.1 2090431 2090643 R putative cold-shock protein complement(2090431..2090643) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237968.1 CDS cspB NC_016856.1 2090630 2090842 R similar to Escherichia coli cold shock-like protein (AAC74625.1); putative cold-shock protein complement(2090630..2090842) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237969.1 CDS STM14_2421 NC_016856.1 2091089 2091208 R hypothetical protein complement(2091089..2091208) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237970.1 CDS umuC NC_016856.1 2091297 2092565 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(2091297..2092565) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237971.1 CDS umuD NC_016856.1 2092568 2092987 R binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD complement(2092568..2092987) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237972.1 CDS STM14_2424 NC_016856.1 2093114 2093275 R putative cytoplasmic protein complement(2093114..2093275) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237973.1 CDS STM14_2425 NC_016856.1 2093253 2093495 R hypothetical protein complement(2093253..2093495) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237974.1 CDS STM14_2427 NC_016856.1 2093906 2094127 R DNA invertase pin protein; similar to CP-933H; AAG54580 and E14 pin: AAA24391 and Mu gin;AAF01129; hypothetical protein complement(2093906..2094127) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237975.1 CDS STM14_2428 NC_016856.1 2094340 2095347 D similar to S. typhimurium LT2; AAF33527; hypothetical protein 2094340..2095347 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237976.1 CDS STM14_2429 NC_016856.1 2095348 2095497 R hypothetical protein complement(2095348..2095497) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237977.1 CDS STM14_2430 NC_016856.1 2095632 2096201 R similar to Mu gpU; AAF01128 and P2 gpG; AAD03287; putative tail fiber assembly protein complement(2095632..2096201) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237978.1 CDS STM14_2431 NC_016856.1 2096201 2097763 R Phage tail protein; similar to Fels-2 phage tail protein NP_461634 and lambda related protein in pMT1 NP_047853; hypothetical protein complement(2096201..2097763) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237979.1 CDS STM14_2432 NC_016856.1 2097750 2098337 R hypothetical protein complement(2097750..2098337) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237980.1 CDS STM14_2434 NC_016856.1 2099413 2099826 R hypothetical protein complement(2099413..2099826) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237981.1 CDS STM14_2435 NC_016856.1 2099831 2100364 R similar to Mu gp45; AAF01123; putative base plate assembly protein complement(2099831..2100364) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237982.1 CDS STM14_2436 NC_016856.1 2100364 2101422 R similar to Mu P; NP_050648; tail protein complement(2100364..2101422) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237983.1 CDS STM14_2437 NC_016856.1 2101419 2102759 R similar to Mu N; AAC23161; hypothetical protein complement(2101419..2102759) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237984.1 CDS STM14_2438 NC_016856.1 2102793 2104721 R similar to Xylella fastidiosa ; F82769; phage related tail protein complement(2102793..2104721) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237985.1 CDS STM14_2439 NC_016856.1 2104733 2105140 R hypothetical protein complement(2104733..2105140) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237986.1 CDS STM14_2440 NC_016856.1 2105128 2105484 R similar to Mu gpM; BAA19196; tail tube protein complement(2105128..2105484) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237987.1 CDS STM14_2441 NC_016856.1 2105484 2106980 R similar to Mu gpL; P44233; tail sheat protein complement(2105484..2106980) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237988.1 CDS STM14_2442 NC_016856.1 2106970 2107134 R hypothetical protein complement(2106970..2107134) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237989.1 CDS STM14_2443 NC_016856.1 2107138 2107698 R hypothetical protein complement(2107138..2107698) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237990.1 CDS STM14_2444 NC_016856.1 2107695 2108207 R hypothetical protein complement(2107695..2108207) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237991.1 CDS STM14_2445 NC_016856.1 2108179 2108583 R hypothetical protein complement(2108179..2108583) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237992.1 CDS STM14_2446 NC_016856.1 2108580 2108903 R similar to CP-933C; AAG55948; hypothetical protein complement(2108580..2108903) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237993.1 CDS STM14_2447 NC_016856.1 2108906 2109106 R hypothetical protein complement(2108906..2109106) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237994.1 CDS STM14_2448 NC_016856.1 2109157 2110362 R similar to Agrobacterium tumefaciens; AAK86763; major capsid protein complement(2109157..2110362) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237995.1 CDS STM14_2449 NC_016856.1 2110377 2111063 R similar to Rhodobacter capsulatus; AAF13181; pro-head protease complement(2110377..2111063) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237996.1 CDS STM14_2450 NC_016856.1 2111005 2112249 R similar to Hk97 gp3; AAA80202 and HK022; AAF30355; portal protein complement(2111005..2112249) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237997.1 CDS STM14_2451 NC_016856.1 2112246 2112428 R hypothetical protein complement(2112246..2112428) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237998.1 CDS STM14_2452 NC_016856.1 2112440 2114173 R similar to E. coli YMFN; P75978. D3; AAD38954; terminase large subunit complement(2112440..2114173) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005237999.1 CDS STM14_2453 NC_016856.1 2114170 2114664 R hypothetical protein complement(2114170..2114664) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238000.1 CDS STM14_2454 NC_016856.1 2114790 2115140 R similar to Xenorhabdus nematophila; CAB58450; hypothetical protein complement(2114790..2115140) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238001.1 CDS STM14_2455 NC_016856.1 2115201 2115503 R hypothetical protein complement(2115201..2115503) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238002.1 CDS STM14_2456 NC_016856.1 2115612 2115710 R hypothetical protein complement(2115612..2115710) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238003.1 CDS STM14_2457 NC_016856.1 2115723 2116142 R hypothetical protein complement(2115723..2116142) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238004.1 CDS STM14_2458 NC_016856.1 2116355 2116840 R similar to ES18 gp15; CAA47618; lysis protein complement(2116355..2116840) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238005.1 CDS STM14_2459 NC_016856.1 2116837 2117451 R similar to Pseudomonas aeruginosa; BAA83137; lytic enzyme (putative glycohydrolase) complement(2116837..2117451) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238006.1 CDS STM14_2460 NC_016856.1 2117454 2117798 R similar to Xenorhabdus nematophila ; CAB58444 and P22 gp13; AAF75039; lysis protein (holin) complement(2117454..2117798) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238007.1 CDS STM14_2461 NC_016856.1 2117839 2117967 D hypothetical protein 2117839..2117967 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238008.1 CDS STM14_2462 NC_016856.1 2118324 2118683 R hypothetical protein complement(2118324..2118683) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238009.1 CDS STM14_2463 NC_016856.1 2118714 2119337 R hypothetical protein complement(2118714..2119337) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238010.1 CDS STM14_2464 NC_016856.1 2119348 2120301 R similar to E.coli O157:H7; BAB35618 and CP-933O; AAG56170; hypothetical protein complement(2119348..2120301) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238011.1 CDS STM14_2465 NC_016856.1 2120345 2121205 R similar to Xylella fastidiosa; XF2294; hypothetical protein complement(2120345..2121205) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238012.1 CDS STM14_2466 NC_016856.1 2121222 2121611 R similar to CP-9333U; AAG57024 and CP-933O; AAG56131; crossover junction protein complement(2121222..2121611) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238013.1 CDS STM14_2467 NC_016856.1 2121608 2122501 R similar to E. coli b2356; A65009 and E. coli 10.3KDa; P76509 and CP-933V; AAG57233; putative DNA methyl transferase complement(2121608..2122501) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238014.1 CDS STM14_2468 NC_016856.1 2122501 2123025 R similar to E. coli 18.8KDa b2357; P76510 and E. coli O157:H7; BAB34011; putative transcriptional activator complement(2122501..2123025) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238015.1 CDS STM14_2469 NC_016856.1 2122985 2123803 R similar to CP-933M; AAG55470 and E. coli; BAB16223; putative replication protein complement(2122985..2123803) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238016.1 CDS STM14_2470 NC_016856.1 2123800 2124024 R hypothetical protein complement(2123800..2124024) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238017.1 CDS STM14_2471 NC_016856.1 2124021 2125178 R similar to S. flexneri 179; S34345 and P4 ORF199; CAA80647; hypothetical protein complement(2124021..2125178) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238018.1 CDS STM14_2472 NC_016856.1 2125175 2125729 R similar to E14 ymfl; P75976; putative phage-encoded DNA-binding protein complement(2125175..2125729) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238019.1 CDS STM14_2473 NC_016856.1 2125758 2125982 R similar to Streptomyces coelicolor; CAB39703; DNA binding protein complement(2125758..2125982) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238020.1 CDS STM14_2474 NC_016856.1 2126080 2126775 D similar to HK022 cI; CAA3422 and Xylella fastidiosa ; F82772; regulatory protein 2126080..2126775 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238021.2 CDS STM14_2475 NC_016856.1 2127590 2127961 D similar to E. coli 16.5Kda INTC-DSDC and Xylella fastidiosa; XF1650; hypothetical protein 2127590..2127961 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238022.1 CDS STM14_2476 NC_016856.1 2128019 2128846 D similar to E. coli INTC-DSDC region and Xylella fastidiosa;E82655; hypothetical protein 2128019..2128846 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238023.1 CDS STM14_2477 NC_016856.1 2128983 2129522 D hypothetical protein 2128983..2129522 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238024.1 CDS STM14_2478 NC_016856.1 2129593 2129823 D hypothetical protein 2129593..2129823 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238025.1 CDS STM14_2479 NC_016856.1 2129820 2130335 D hypothetical protein 2129820..2130335 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238026.1 CDS STM14_2480 NC_016856.1 2130332 2130949 D similar to N15 gp45;AAC19083 and CP-933R; AAG56431; hypothetical protein 2130332..2130949 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238027.1 CDS STM14_2481 NC_016856.1 2130946 2131779 D similar to H19J; CAB38712 and 933W; AAD25483; hypothetical protein 2130946..2131779 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238028.1 CDS STM14_2482 NC_016856.1 2131783 2132352 D similar to CP-933O; AAG56113 and CP-933P; AAK16992 and CP-933M; AAG55458; endodeoxyribonuclease 2131783..2132352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238029.1 CDS STM14_2483 NC_016856.1 2132377 2132619 D hypothetical protein 2132377..2132619 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238030.1 CDS STM14_2484 NC_016856.1 2132621 2133610 D similar to CP-933U; AAG57039 and CP-933M; AAG55457; integrase protein 2132621..2133610 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238031.1 CDS yeeI NC_016856.1 2133902 2134699 D putative inner membrane protein 2133902..2134699 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238032.1 CDS STM14_2489 NC_016856.1 2136009 2136482 D putative endoprotease 2136009..2136482 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238033.1 CDS STM14_2490 NC_016856.1 2136957 2137655 D putative DNA-binding protein 2136957..2137655 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238034.1 CDS STM14_2491 NC_016856.1 2137998 2140166 D contains TPR repeats; hypothetical protein 2137998..2140166 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238035.1 CDS STM14_2492 NC_016856.1 2140223 2141953 D hypothetical protein 2140223..2141953 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238036.1 CDS STM14_2493 NC_016856.1 2142163 2142336 D hypothetical protein 2142163..2142336 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238037.1 CDS STM14_2494 NC_016856.1 2142487 2142741 R hypothetical protein complement(2142487..2142741) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238038.1 CDS amn NC_016856.1 2142858 2144312 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(2142858..2144312) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238039.1 CDS STM14_2496 NC_016856.1 2144508 2144834 R similar to STM2508 and STM2902; putative cytoplasmic protein complement(2144508..2144834) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238040.1 CDS STM14_2497 NC_016856.1 2144828 2145214 R hypothetical protein complement(2144828..2145214) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238041.1 CDS STM14_2498 NC_016856.1 2145540 2145707 D similar to STM2508 and STM2901; hypothetical protein 2145540..2145707 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238042.1 CDS yeeO NC_016856.1 2145928 2147385 R MATE family; hypothetical protein complement(2145928..2147385) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238043.1 CDS STM14_2501 NC_016856.1 2147387 2147539 R hypothetical protein complement(2147387..2147539) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238044.1 CDS erfK NC_016856.1 2147847 2148776 R protein ErkF/SrfK precursor (SW:ERFK_SALTY); hypothetical protein complement(2147847..2148776) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238045.1 CDS cobT NC_016856.1 2148854 2149924 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2148854..2149924) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238046.1 CDS cobS NC_016856.1 2149951 2150694 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(2149951..2150694) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238047.1 CDS cobU NC_016856.1 2150691 2151236 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase complement(2150691..2151236) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238048.1 CDS cbiP NC_016856.1 2151233 2152753 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(2151233..2152753) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238049.1 CDS cbiO NC_016856.1 2152750 2153565 R with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit complement(2152750..2153565) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238050.1 CDS cbiQ NC_016856.1 2153574 2154251 R cobalt transport protein CbiQ (SW:CBIQ_SALTY); vitamin B12 biosynthetic protein complement(2153574..2154251) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238051.1 CDS cbiN NC_016856.1 2154238 2154519 R periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN complement(2154238..2154519) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238052.1 CDS cbiM NC_016856.1 2154521 2155168 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(2154521..2155168) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238053.1 CDS cbiL NC_016856.1 2155255 2155968 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(2155255..2155968) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238054.1 CDS cbiK NC_016856.1 2155965 2156759 R cobalt chelatase (SW:CBIK_SALTY); vitamin B12 biosynthetic protein complement(2155965..2156759) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238055.1 CDS cbiJ NC_016856.1 2156762 2157553 R CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase complement(2156762..2157553) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238056.1 CDS cbiH NC_016856.1 2157550 2158275 R catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C(17)-methyltransferase complement(2157550..2158275) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238057.1 CDS cbiG NC_016856.1 2158275 2159330 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(2158275..2159330) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238058.1 CDS cbiF NC_016856.1 2159311 2160084 R precorrin-4 C11-methyltransferase (SW:CBIF_SALTY); vitamin B12 biosynthetic protein complement(2159311..2160084) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238059.1 CDS cbiT NC_016856.1 2160068 2160646 R catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase complement(2160068..2160646) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238060.1 CDS cbiE NC_016856.1 2160636 2161241 R catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase complement(2160636..2161241) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238061.1 CDS cbiD NC_016856.1 2161235 2162374 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2161235..2162374) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238062.1 CDS cbiC NC_016856.1 2162374 2163006 R catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase complement(2162374..2163006) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238063.1 CDS cbiB NC_016856.1 2163017 2163976 R converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; protein CbiB complement(2163017..2163976) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238064.1 CDS cbiA NC_016856.1 2163973 2165352 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2163973..2165352) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238065.1 CDS STM14_2524 NC_016856.1 2165668 2165799 R hypothetical protein complement(2165668..2165799) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238066.1 CDS pocR NC_016856.1 2165950 2166861 R regulatory protein PocR (SW:POCR_SALTY); propanediol utilization protein; AraC family; transcriptional regulator complement(2165950..2166861) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238067.2 CDS pduF NC_016856.1 2167078 2167872 R propanediol diffusion facilitator (SW:PDUF_SALTY); propanediol utilization protein; propanediol diffusion facilitator complement(2167078..2167872) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238068.1 CDS pduA NC_016856.1 2168398 2168682 D propanediol utilization protein PduA (SW:PDUA_SALTY); propanediol utilization protein; polyhedral body protein 2168398..2168682 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238069.1 CDS pudB NC_016856.1 2168679 2169491 D propanediol utilization protein PduB (SW:PDUB_SALTY); propanediol utilization protein; polyhedral body protein 2168679..2169491 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238070.1 CDS pduC NC_016856.1 2169510 2171174 D glycerol dehydratase large subunit (SW:DHAB_SALTY); propanediol utilization protein; propanediol dehydratase large subunit 2169510..2171174 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238071.1 CDS pduD NC_016856.1 2171185 2171859 D propanediol utilization protein; propanediol dehydratase medium subunit 2171185..2171859 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238072.1 CDS pduE NC_016856.1 2171874 2172395 D propanediol utilization protein; propanediol dehydratase small subunit 2171874..2172395 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238073.1 CDS pduG NC_016856.1 2172405 2174237 D propanediol utilization protein; propanediol dehydratase reactivation protein 2172405..2174237 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238074.1 CDS pduH NC_016856.1 2174227 2174577 D propanediol utilization protein; propanediol dehydratase reactivation protein 2174227..2174577 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238075.1 CDS pduJ NC_016856.1 2174596 2174871 D similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2174596..2174871 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238076.1 CDS pduK NC_016856.1 2174875 2175357 D similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2174875..2175357 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238077.1 CDS pduL NC_016856.1 2175357 2175989 D propanediol utilization protein 2175357..2175989 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238078.1 CDS pduM NC_016856.1 2175986 2176477 D propanediol utilization protein 2175986..2176477 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238079.1 CDS pduN NC_016856.1 2176481 2176756 D similar to Escherichia coli detox protein (AAC75509.1); propanediol utilization protein; polyhedral body protein 2176481..2176756 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238080.1 CDS pduO NC_016856.1 2176766 2177776 D related to B12-dependent glycerol dehydratase; propanediol utilization protein 2176766..2177776 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238081.1 CDS pduP NC_016856.1 2177773 2179167 D similar to Escherichia coli ethanolamine utilization; similar to acetaldehyde dehydrogenase (AAC75508.1); propanediol utilization protein; CoA-dependent propionaldehyde dehydrogenase 2177773..2179167 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238082.1 CDS pduQ NC_016856.1 2179179 2180291 D similar to Escherichia coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); propanediol utilization protein; propanol dehydrogenase 2179179..2180291 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238083.1 CDS pduS NC_016856.1 2180288 2181643 D similar to Escherichia coli putative membrane protein (AAC74701.1); propanediol utilization protein; polyhedral body protein 2180288..2181643 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238084.1 CDS pduT NC_016856.1 2181646 2182200 D similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2181646..2182200 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238085.1 CDS pduU NC_016856.1 2182200 2182550 D propanediol utilization protein PduU (SW:PDUU_SALTY); propanediol utilization protein; polyhedral body protein 2182200..2182550 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238086.1 CDS pduV NC_016856.1 2182555 2183007 D propanediol utilization protein PduV (SW:PDUV_SALTY); propanediol utilization protein 2182555..2183007 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238087.1 CDS pduW NC_016856.1 2182992 2184206 D involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol; propionate kinase 2182992..2184206 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238088.1 CDS pduX NC_016856.1 2184264 2185166 D propanediol utilization protein 2184264..2185166 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238089.1 CDS yeeX NC_016856.1 2185200 2185535 R similar to Escherichia coli putative alpha helix protein (AAC75068.1); hypothetical protein complement(2185200..2185535) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238090.1 CDS STM14_2549 NC_016856.1 2185570 2185701 R hypothetical protein complement(2185570..2185701) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238091.1 CDS yeeA NC_016856.1 2185780 2186838 R putative inner membrane protein complement(2185780..2186838) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238092.1 CDS sbmC NC_016856.1 2186957 2187424 R similar to DNA gyrase inhibitory protein (SW:GYRI_SALTY); DNA gyrase inhibitor complement(2186957..2187424) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238093.1 CDS dacD NC_016856.1 2187577 2188749 R removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase complement(2187577..2188749) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238094.1 CDS phsC NC_016856.1 2188873 2189637 R membrane-anchoring protein (SW:PHSC_SALTY); hydrogen sulfide production; thiosulfate reductase cytochrome B subunit complement(2188873..2189637) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238095.1 CDS phsB NC_016856.1 2189634 2190212 R PhsB (SW:PHSB_SALTY); hydrogen sulfide production; iron-sulfur subunit; electron transfer; thiosulfate reductase electron transport protein complement(2189634..2190212) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238096.1 CDS phsA NC_016856.1 2190227 2192503 R membrane-anchoring protein (SW:PHSA_SALTY); hydrogen sulfide production; thiosulfate reductase complement(2190227..2192503) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238097.1 CDS STM14_2556 NC_016856.1 2192950 2193219 R hypothetical protein complement(2192950..2193219) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238098.1 CDS sopA NC_016856.1 2193122 2195470 D similar to protein from Salmonella dublin; translocated by SPI-1; type III secretion; secreted effector protein 2193122..2195470 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238099.1 CDS STM14_2558 NC_016856.1 2195674 2195796 R hypothetical protein complement(2195674..2195796) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238100.1 CDS sbcB NC_016856.1 2195813 2197243 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2195813..2197243 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238101.1 CDS yeeF NC_016856.1 2197379 2198743 R similar to Escherichia coli putative amino acid/amine transport protein (AAC75075.1); APC family; putative amino acid transport protein complement(2197379..2198743) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238102.1 CDS STM14_2561 NC_016856.1 2198729 2198896 D hypothetical protein 2198729..2198896 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238103.1 CDS STM14_2562 NC_016856.1 2198740 2198937 R hypothetical protein complement(2198740..2198937) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238104.1 CDS yeeY NC_016856.1 2199023 2199937 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75076.1); LysR family; putative transcriptional regulator complement(2199023..2199937) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238105.1 CDS yeeZ NC_016856.1 2199983 2200807 R similar to Escherichia coli putative enzyme of sugar metabolism (AAC75077.1); putative dehydratase complement(2199983..2200807) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238106.2 CDS hisG NC_016856.1 2201167 2202066 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2201167..2202066 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238107.1 CDS hisD NC_016856.1 2202169 2203473 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2202169..2203473 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238108.1 CDS hisC NC_016856.1 2203470 2204549 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2203470..2204549 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238109.1 CDS hisB NC_016856.1 2204546 2205613 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2204546..2205613 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238110.2 CDS hisH NC_016856.1 2205613 2206203 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2205613..2206203 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238111.1 CDS hisA NC_016856.1 2206203 2206940 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2206203..2206940 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238112.1 CDS hisF NC_016856.1 2206922 2207698 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2206922..2207698 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238113.1 CDS hisI NC_016856.1 2207692 2208303 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2207692..2208303 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238114.1 CDS wzzB NC_016856.1 2208384 2209367 R chain length determinant protein; polysaccharide antigen chainregulator (SW:WZZB_SALTY); regulator of length of O-antigen component of lipopolysaccharide chains; lipopolysaccharide O-antigen chain length regulator complement(2208384..2209367) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238115.1 CDS udg NC_016856.1 2209510 2210676 R UDP-glucose 6-dehydrogenase (SW:UDG_SALTY); UDP-glucose/GDP-mannose dehydrogenase complement(2209510..2210676) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238116.1 CDS gnd NC_016856.1 2210913 2212319 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2210913..2212319) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238117.1 CDS rfbP NC_016856.1 2212483 2213913 R undecaprenyl-phosphate galactosephosphotransferase (SW:RFBP_SALTY); mutation results in LPS side chain defect; undecaprenol-phosphate galactosephosphotransferase/O-antigen transferase complement(2212483..2213913) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238118.1 CDS rfbK NC_016856.1 2213985 2215418 R phosphomannomutase (SW:RFBK_SALTY); LPS side chain defect; phosphomannomutase complement(2213985..2215418) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238119.1 CDS rfbM NC_016856.1 2215405 2216844 R mannose-1-phosphate guanylyltransferase GDP (SW:RFBM_SALTY); LPS side chain defect; mannose-1-phosphate guanylyltransferase complement(2215405..2216844) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238120.1 CDS rfbN NC_016856.1 2216845 2217789 R putative rhamnosyltransferase RfbN (SW:RFBN_SALTY); LPS side chain defect; rhamnosyl transferase complement(2216845..2217789) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238121.1 CDS rfbU NC_016856.1 2217790 2218851 R RFBU protein (SW:RFBU_SALTY); LPS side chain defect; mannosyl transferase complement(2217790..2218851) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238122.1 CDS rfbV NC_016856.1 2219171 2220172 R RFBV protein (SW:RFBV_SALTY); LPS side chain defect; abequosyltransferase complement(2219171..2220172) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238123.1 CDS rfbX NC_016856.1 2220177 2221469 R putative O-antigen transporter (SW:RFBX_SALTY); LPS side chain defect; putative O-antigen transferase complement(2220177..2221469) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238124.1 CDS rfbJ NC_016856.1 2221551 2222450 R CDP-abequose synthase (SW:RFBJ_SALTY); LPS side chain defect; CDP-abequose synthase complement(2221551..2222450) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238125.1 CDS rfbH NC_016856.1 2222478 2223791 R lipopolysaccharide biosynthesis protein RfbH (SW:RFBH_SALTY); LPS side chain defect; CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase complement(2222478..2223791) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238126.1 CDS rfbG NC_016856.1 2223818 2224897 R CDP-glucose 4,6-dehydratase (SW:RFBG_SALTY); LPS side chain defect; CDP glucose 4,6-dehydratase complement(2223818..2224897) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238127.1 CDS rfbF NC_016856.1 2224902 2225675 R glucose-1-phosphate cytidylyltransferase (SW:RFBF_SALTY); LPS side chain defect; glucose-1-phosphate cytidylyltransferase complement(2224902..2225675) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238128.1 CDS rfbI NC_016856.1 2225672 2226664 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(2225672..2226664) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238129.1 CDS rfbC NC_016856.1 2226670 2227221 R DTDP-4-dehydrorhamnose 3,5-epimerase (SW:RFBC_SALTY); dTDP-4-deoxyrhamnose 3,5 epimerase complement(2226670..2227221) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238130.1 CDS rfbA NC_016856.1 2227222 2228100 R glucose-1-phosphate thymidylyltransferase (SW:RFBA_SALTY); dTDP-glucose pyrophosphorylase complement(2227222..2228100) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238131.1 CDS rfbD NC_016856.1 2228148 2229047 R with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose; dTDP-4-dehydrorhamnose reductase complement(2228148..2229047) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238132.1 CDS rfbB NC_016856.1 2229047 2230132 R NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase complement(2229047..2230132) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238133.2 CDS galF NC_016856.1 2230509 2231402 R together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalF complement(2230509..2231402) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238134.1 CDS wcaM NC_016856.1 2231580 2232983 R WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; putative colanic acid biosynthesis protein complement(2231580..2232983) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238135.1 CDS wcaL NC_016856.1 2232994 2234214 R putative colanic acid biosynthesis glycosyl transferase WcaL (SW:WCAL_SALTY); in colanic acid gene cluster; putative glycosyl transferase complement(2232994..2234214) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238136.1 CDS wcaK NC_016856.1 2234211 2235491 R similar to Escherichia coli putative galactokinase (AAC75106.1); in colanic acid gene cluster; putative pyruvyl transferase complement(2234211..2235491) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238137.1 CDS wzxC NC_016856.1 2235513 2236991 R similar to Escherichia coli probable export protein (AAC75107.1); in colanic acid gene cluster; colanic acid exporter complement(2235513..2236991) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238138.1 CDS wcaJ NC_016856.1 2237124 2238518 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; putative UDP-glucose lipid carrier transferase complement(2237124..2238518) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238139.1 CDS cpsG NC_016856.1 2238572 2239942 R phosphomannomutase in colanic acid gene cluster (SW:MANB_SALTY); phosphomannomutase complement(2238572..2239942) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238140.1 CDS STM14_2599 NC_016856.1 2239941 2240216 D hypothetical protein 2239941..2240216 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238141.1 CDS manC NC_016856.1 2240053 2241489 R mannose-1-phosphate guanylyltransferase; GDP (SW:MANC_SALTY); in colanic acid gene cluster; mannose-1-phosphate guanylyltransferase complement(2240053..2241489) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238142.1 CDS wcaI NC_016856.1 2241492 2242715 R similar to Escherichia coli putative colanic biosynthesis glycosyl transferase (AAC75111.1); involved in in colanic acid biosynthesis; glycosyl transferase family protein complement(2241492..2242715) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238143.1 CDS wcaH NC_016856.1 2242712 2243185 R similar to Escherichia coli GDP-mannose mannosyl hydrolase (AAC75112.1); in colanic acid biosynthesis; GDP-mannose mannosyl hydrolase complement(2242712..2243185) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238144.1 CDS wcaG NC_016856.1 2243188 2244153 R similar to Escherichia coli putative nucleotide di-P-sugar epimerase/dehydratase (AAC75113.1); GDP fucose synthetase in colanic acid biosyntheis; GDP-fucose synthetase complement(2243188..2244153) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238145.1 CDS gmd NC_016856.1 2244156 2245277 R similar to Escherichia coli GDP-D-mannose dehydratase (AAC75114.1); colanic acid gene cluster; GDP-D-mannose dehydratase complement(2244156..2245277) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238146.1 CDS wcaF NC_016856.1 2245301 2245855 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); putative colanic acid biosynthesis acetyltransferase WcaF complement(2245301..2245855) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238147.1 CDS wcaE NC_016856.1 2245871 2246617 R similar to Escherichia coli putative colanic acid biosynthesis glycosyl transferase (AAC75116.1); involved in colanic acid biosynthesis; glycosyl transferase family protein complement(2245871..2246617) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238148.1 CDS wcaD NC_016856.1 2246630 2247844 R essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; putative colanic acid biosynthesis protein complement(2246630..2247844) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238149.1 CDS wcaC NC_016856.1 2247819 2249036 R similar to Escherichia coli putative glycosyl transferase (AAC75118.1); involved in colanic acid biosynthesis; glycosyl transferase family protein complement(2247819..2249036) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238150.1 CDS wcaB NC_016856.1 2249033 2249521 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; putative colanic acid biosynthesis acetyltransferase WcaB complement(2249033..2249521) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238151.1 CDS wcaA NC_016856.1 2249524 2250366 R similar to Escherichia coli putative regulator (AAC75120.1); involved in colanic acid biosynthesis; glycosyl transferase family protein complement(2249524..2250366) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238152.1 CDS wzc NC_016856.1 2250453 2252612 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase complement(2250453..2252612) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238153.1 CDS wzb NC_016856.1 2252609 2253058 R Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; tyrosine phosphatase complement(2252609..2253058) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238154.1 CDS wza NC_016856.1 2253064 2254203 R similar to Escherichia coli putative polysaccharide export protein (AAC75123.1); putative outer membrane polysaccharide export protein complement(2253064..2254203) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238155.1 CDS STM14_2614 NC_016856.1 2254277 2254522 D hypothetical protein 2254277..2254522 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238156.1 CDS yegH NC_016856.1 2254878 2256458 D similar to Escherichia coli putative transport protein (AAC75124.1); putative inner membrane protein 2254878..2256458 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238157.1 CDS asmA NC_016856.1 2256544 2258400 R YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; putative assembly protein complement(2256544..2258400) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238158.1 CDS dcd NC_016856.1 2258439 2259020 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2258439..2259020) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238159.1 CDS udk NC_016856.1 2259111 2259752 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2259111..2259752) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238160.1 CDS STM14_2619 NC_016856.1 2259828 2259998 R hypothetical protein complement(2259828..2259998) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238161.1 CDS yegE NC_016856.1 2260083 2263073 D similar to Escherichia coli putative sensor-type protein (AAC75128.1); contains PAS/PAC domain; domain 1/2; diguanylate cyclase 2260083..2263073 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238162.2 CDS alkA NC_016856.1 2263041 2263910 R inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; 3-methyladenine DNA glycosylase complement(2263041..2263910) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238163.1 CDS yegD NC_016856.1 2264044 2265396 D similar to Escherichia coli putative heat shock protein (AAC75130.1); Hsp70/DnaK; putative chaperone 2264044..2265396 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238164.1 CDS STM14_2623 NC_016856.1 2265633 2265749 R hypothetical protein complement(2265633..2265749) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238165.1 CDS STM14_2624 NC_016856.1 2265837 2267078 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA 2265837..2267078 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238166.1 CDS yegN NC_016856.1 2267078 2270200 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB 2267078..2270200 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238167.1 CDS yegO NC_016856.1 2270201 2273281 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC 2270201..2273281 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238168.1 CDS yegB NC_016856.1 2273278 2274690 D similar to Escherichia coli putative transport protein (AAC75138.1); MFS family; multidrug efflux system protein MdtE 2273278..2274690 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238169.1 CDS baeS NC_016856.1 2274690 2276093 D similar to Escherichia coli sensor protein for BaeR (AAC75139.1); in two-component regulatory system; signal transduction histidine-protein kinase BaeS 2274690..2276093 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238170.1 CDS baeR NC_016856.1 2276090 2276812 D response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR 2276090..2276812 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238171.1 CDS STM14_2631 NC_016856.1 2277399 2278283 D putative cytoplasmic protein 2277399..2278283 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238172.1 CDS STM14_2632 NC_016856.1 2278283 2278999 D putative inner membrane protein 2278283..2278999 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238173.1 CDS STM14_2633 NC_016856.1 2279010 2281121 D putative inner membrane protein 2279010..2281121 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238174.1 CDS yegQ NC_016856.1 2281237 2282598 D putative protease 2281237..2282598 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238175.1 CDS STM14_2635 NC_016856.1 2282708 2282821 R hypothetical protein complement(2282708..2282821) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238176.1 CDS STM14_2637 NC_016856.1 2284131 2284547 R putative cytoplasmic protein complement(2284131..2284547) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238177.1 CDS STM14_2638 NC_016856.1 2284669 2285004 R putative inner membrane protein complement(2284669..2285004) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238178.1 CDS STM14_2639 NC_016856.1 2285114 2285233 D hypothetical protein 2285114..2285233 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238179.1 CDS STM14_2640 NC_016856.1 2285366 2285482 R similar to hypothetical proteins from Salmonella spp.; hypothetical protein complement(2285366..2285482) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238180.1 CDS yegS NC_016856.1 2285566 2286465 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2285566..2286465 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238181.1 CDS fbaB NC_016856.1 2286518 2287570 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(2286518..2287570) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238182.1 CDS yegT NC_016856.1 2287824 2289095 D similar to Escherichia coli putative nucleoside permease protein (AAC75159.1); MFS family; putative transport protein 2287824..2289095 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238183.1 CDS yegU NC_016856.1 2289092 2290096 D putative glycohydrolase 2289092..2290096 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238184.1 CDS yegV NC_016856.1 2290093 2291058 D similar to Escherichia coli putative kinase (AAC75161.1); putative sugar kinase 2290093..2291058 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238185.1 CDS yegW NC_016856.1 2291032 2291778 R similar to Escherichia coli putative transcriptional regulator (AAC75162.1); GntR family; putative regulatory protein complement(2291032..2291778) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238186.1 CDS thiD NC_016856.1 2291814 2292614 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(2291814..2292614) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238187.1 CDS thiM NC_016856.1 2292601 2293398 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(2292601..2293398) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238188.1 CDS STM14_2649 NC_016856.1 2293497 2293682 R hypothetical protein complement(2293497..2293682) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238189.1 CDS STM14_2650 NC_016856.1 2293808 2294122 D hypothetical protein 2293808..2294122 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238190.1 CDS STM14_2651 NC_016856.1 2294185 2294343 R hypothetical protein complement(2294185..2294343) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238191.1 CDS stcD NC_016856.1 2294385 2295392 R similar to Escherichia coli putative type-1 fimbrial protein (AAC75169.1); putative outer membrane lipoprotein complement(2294385..2295392) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238192.1 CDS stcC NC_016856.1 2295408 2297897 R similar to Escherichia coli putative outer membrane protein (AAC75170.1); putative outer membrane protein complement(2295408..2297897) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238193.1 CDS stcB NC_016856.1 2297911 2298594 R similar to Escherichia coli putative chaperone (AAC75171.1); putative periplasmic chaperone protein complement(2297911..2298594) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238194.1 CDS stcA NC_016856.1 2298650 2299180 R similar to Escherichia coli putative fimbrial-like protein (AAC75172.1); putative fimbrial-like protein complement(2298650..2299180) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238195.1 CDS yehE NC_016856.1 2299459 2299740 R putative outer membrane protein complement(2299459..2299740) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238196.1 CDS mrp NC_016856.1 2300018 2301127 R similar to Escherichia coli putative ATPase (AAC75174.1); putative ATPase complement(2300018..2301127) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238197.1 CDS metG NC_016856.1 2301292 2303325 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2301292..2303325 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238198.1 CDS yehR NC_016856.1 2303566 2304024 D putative lipoprotein 2303566..2304024 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238199.1 CDS STM14_2660 NC_016856.1 2304196 2304726 D hypothetical 16.9 kDa lipoprotein precursor; hypothetical protein 2304196..2304726 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238200.1 CDS yehS NC_016856.1 2304783 2305250 R putative cytoplasmic protein complement(2304783..2305250) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238201.1 CDS yehT NC_016856.1 2305297 2306016 R unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT complement(2305297..2306016) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238202.1 CDS yehU NC_016856.1 2306013 2307800 R similar to Escherichia coli putative 2-component sensor protein (AAC75187.1); putative sensor kinase complement(2306013..2307800) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238203.1 CDS yehV NC_016856.1 2307921 2308652 D similar to Escherichia coli putative transcriptional regulator (AAC75188.1); MerR family; putative transcriptional repressor 2307921..2308652 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238204.1 CDS STM14_2665 NC_016856.1 2308712 2308819 D hypothetical protein 2308712..2308819 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238205.1 CDS yehW NC_016856.1 2308800 2309531 R similar to Escherichia coli putative transport system permease protein (AAC75189.1); putative ABC-type proline/glycine betaine transport system permease component complement(2308800..2309531) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238206.1 CDS yehX NC_016856.1 2309515 2310462 R similar to Escherichia coli putative ATP-binding component of a transport system (AAC75190.1); putative ABC-type proline/glycine betaine transport system ATPase component complement(2309515..2310462) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238207.1 CDS yehY NC_016856.1 2310455 2311624 R similar to Escherichia coli putative transport system permease protein (AAC75191.1); putative ABC-type proline/glycine betaine transport system permease component complement(2310455..2311624) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238208.1 CDS yehZ NC_016856.1 2311628 2312545 R similar to Escherichia coli putative transport system permease protein (AAC75192.1); putative ABC superfamily binding protein; possibly glycine betaine choline transport for osmoprotection; putative transport protein complement(2311628..2312545) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238209.1 CDS bglX NC_016856.1 2312726 2315023 R periplasmic beta-glucosidase precursor (SW:BGLX_SALTY); periplasmic beta-D-glucoside glucohydrolase complement(2312726..2315023) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238210.1 CDS STM14_2671 NC_016856.1 2315124 2315237 R hypothetical protein complement(2315124..2315237) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238211.1 CDS dld NC_016856.1 2315290 2317020 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2315290..2317020 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238212.1 CDS pbpG NC_016856.1 2317078 2318025 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2317078..2318025) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238213.1 CDS STM14_2674 NC_016856.1 2317916 2318191 R hypothetical protein complement(2317916..2318191) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238214.1 CDS yohC NC_016856.1 2318191 2318778 R putative transport protein complement(2318191..2318778) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238215.1 CDS STM14_2676 NC_016856.1 2318810 2318917 D hypothetical protein 2318810..2318917 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238216.1 CDS yohD NC_016856.1 2318910 2319506 D DedA family; hypothetical protein 2318910..2319506 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238217.1 CDS yohF NC_016856.1 2319555 2320316 R similar to Escherichia coli putative oxidoreductase (AAC75198.1); acetoin dehydrogenase complement(2319555..2320316) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238218.1 CDS yohG NC_016856.1 2320382 2321818 R may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ complement(2320382..2321818) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238219.1 CDS STM14_2680 NC_016856.1 2322009 2322206 D hypothetical protein 2322009..2322206 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238220.1 CDS yohI NC_016856.1 2322277 2323215 R similar to Escherichia coli putative nitrogen regulatory protein (AAC75201.1); tRNA-dihydrouridine synthase C complement(2322277..2323215) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238221.1 CDS STM14_2682 NC_016856.1 2323324 2324517 R catalyzes the formation of catechol from salicylate; salicylate hydroxylase complement(2323324..2324517) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238222.1 CDS STM14_2683 NC_016856.1 2324532 2325176 R similar to Escherichia coli regulator of transcription; stringent starvation protein A (AAC76261.1); putative glutathione S-transferase complement(2324532..2325176) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238223.1 CDS STM14_2684 NC_016856.1 2325185 2325886 R similar to Escherichia coli putative isomerase (AAC74264.1); putative flutathione S-transferase complement(2325185..2325886) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238224.1 CDS STM14_2685 NC_016856.1 2325902 2326939 R putative 1,2-dioxygenase complement(2325902..2326939) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238225.1 CDS STM14_2686 NC_016856.1 2326951 2328309 R similar to Escherichia coli putative transport protein (AAC73456.1); putative sugar transporter complement(2326951..2328309) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238226.1 CDS STM14_2687 NC_016856.1 2328435 2329343 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74504.1); LysR family; putative transcriptional regulator 2328435..2329343 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238227.1 CDS yohJ NC_016856.1 2329475 2329873 D hypothetical protein 2329475..2329873 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238228.1 CDS yohK NC_016856.1 2329870 2330565 D similar to Escherichia coli putative seritonin transporter (AAC75203.1); hypothetical protein 2329870..2330565 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238229.1 CDS cdd NC_016856.1 2330719 2331603 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2330719..2331603 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238230.1 CDS sanA NC_016856.1 2331780 2332499 D similar to Escherichia coli vancomycin sensitivity (AAC75205.1); hypothetical protein 2331780..2332499 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238231.1 CDS STM14_2692 NC_016856.1 2332496 2332741 D putative inner membrane protein 2332496..2332741 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238232.1 CDS STM14_2693 NC_016856.1 2332946 2334187 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 2332946..2334187 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238233.1 CDS yeiA NC_016856.1 2334181 2335416 D catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2334181..2335416 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238234.1 CDS mglC NC_016856.1 2335491 2336501 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein complement(2335491..2336501) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238235.1 CDS mglA NC_016856.1 2336517 2338037 R with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein complement(2336517..2338037) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238236.1 CDS STM14_2697 NC_016856.1 2338065 2338184 D hypothetical protein 2338065..2338184 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238237.1 CDS mglB NC_016856.1 2338171 2339169 R D-galactose-binding periplasmic protein precursor; GDP; D-galactose/D-glucose binding protein; GGBP (SW:DGAL_SALTY); ABC superfamily periplasmic protein; galactose transport protein complement(2338171..2339169) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238238.1 CDS STM14_2699 NC_016856.1 2339344 2339451 D hypothetical protein 2339344..2339451 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238239.1 CDS galS NC_016856.1 2339668 2340690 R negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS complement(2339668..2340690) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238240.1 CDS STM14_2701 NC_016856.1 2340683 2340847 D hypothetical protein 2340683..2340847 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238241.1 CDS yeiB NC_016856.1 2340840 2341982 R hypothetical protein complement(2340840..2341982) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238242.1 CDS folE NC_016856.1 2341997 2342665 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2341997..2342665) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238243.1 CDS STM14_2704 NC_016856.1 2342649 2342762 R hypothetical protein complement(2342649..2342762) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238244.1 CDS STM14_2705 NC_016856.1 2342720 2342848 R hypothetical protein complement(2342720..2342848) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238245.1 CDS STM14_2706 NC_016856.1 2342834 2343067 D hypothetical protein 2342834..2343067 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238246.1 CDS fghA NC_016856.1 2342995 2343852 D similar to Escherichia coli putative esterase (AAC75215.1); S-formylglutathione hydrolase 2342995..2343852 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238247.1 CDS STM14_2708 NC_016856.1 2343841 2344230 R putative transcriptional regulator complement(2343841..2344230) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238248.1 CDS STM14_2709 NC_016856.1 2344235 2345602 R similar to Escherichia coli L-serine deaminase (AAC74884.1); putative L-serine dehydratase complement(2344235..2345602) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238249.1 CDS STM14_2710 NC_016856.1 2345635 2345787 R hypothetical protein complement(2345635..2345787) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238250.1 CDS STM14_2711 NC_016856.1 2345819 2346706 D similar to Escherichia coli 3-phosphoserine phosphatase (AAC77341.1); putative phosphoserine phosphatase 2345819..2346706 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238251.1 CDS STM14_2712 NC_016856.1 2346739 2348061 D similar to Escherichia coli regulator of uhpT (AAC76690.1); putative regulatory protein 2346739..2348061 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238252.1 CDS cirA NC_016856.1 2348105 2350096 R Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; colicin I receptor complement(2348105..2350096) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238253.1 CDS STM14_2714 NC_016856.1 2349999 2350304 D hypothetical protein 2349999..2350304 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238254.1 CDS lysP NC_016856.1 2350441 2351910 R similar to Escherichia coli lysine-specific permease (AAC75217.1); APC family; lysine transporter complement(2350441..2351910) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238255.1 CDS STM14_2716 NC_016856.1 2351963 2352097 R hypothetical protein complement(2351963..2352097) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238256.1 CDS yeiE NC_016856.1 2352100 2352963 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75218.1); LysR family; putative DNA-binding transcriptional regulator complement(2352100..2352963) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238257.1 CDS STM14_2718 NC_016856.1 2352991 2353110 R hypothetical protein complement(2352991..2353110) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238258.1 CDS yeiH NC_016856.1 2353084 2354133 D putative inner membrane protein 2353084..2354133 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238259.1 CDS nfo NC_016856.1 2354212 2355069 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2354212..2355069 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238260.1 CDS fruA NC_016856.1 2355134 2356822 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC complement(2355134..2356822) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238261.1 CDS fruK NC_016856.1 2356839 2357777 R converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase complement(2356839..2357777) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238262.1 CDS fruF NC_016856.1 2357777 2358907 R phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional fructose-specific PTS IIA/HPr protein complement(2357777..2358907) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238263.1 CDS STM14_2724 NC_016856.1 2358928 2359059 D hypothetical protein 2358928..2359059 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238264.1 CDS STM14_2725 NC_016856.1 2359144 2359266 D hypothetical protein 2359144..2359266 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238265.1 CDS STM14_2726 NC_016856.1 2359149 2359277 R hypothetical protein complement(2359149..2359277) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238266.1 CDS setB NC_016856.1 2359276 2360457 D sugar efflux transporter B (SW:SETB_SALTY); proton efflux pump 2359276..2360457 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238267.1 CDS STM14_2728 NC_016856.1 2360522 2361187 R putative inner membrane protein complement(2360522..2361187) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238268.1 CDS STM14_2729 NC_016856.1 2361189 2361311 R putative inner membrane protein complement(2361189..2361311) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238269.1 CDS STM14_2730 NC_016856.1 2361472 2361576 R hypothetical protein complement(2361472..2361576) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238270.1 CDS STM14_2731 NC_016856.1 2361699 2361953 R hypothetical protein complement(2361699..2361953) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238271.2 CDS yeiP NC_016856.1 2362277 2362849 D Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2362277..2362849 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238272.1 CDS yeiR NC_016856.1 2363062 2364048 D putative cobalamin biosynthetic protein 2363062..2364048 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238273.1 CDS yeiU NC_016856.1 2364078 2364797 D putative permease 2364078..2364797 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238274.1 CDS STM14_2736 NC_016856.1 2364975 2365205 R hypothetical protein complement(2364975..2365205) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238275.1 CDS spr NC_016856.1 2365211 2365783 D by similarity, Spr seems to have peptidase activity; involved in thermoresistance; putative outer membrane lipoprotein 2365211..2365783 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238276.1 CDS STM14_2738 NC_016856.1 2365897 2366040 D hypothetical protein 2365897..2366040 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238277.1 CDS rtn NC_016856.1 2366109 2367665 D involved in resistance to lambda and N4 phages; hypothetical protein 2366109..2367665 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238278.1 CDS yejA NC_016856.1 2367772 2369577 D putative ABC transporter periplasmic binding protein 2367772..2369577 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238279.1 CDS yejB NC_016856.1 2369587 2370681 D similar to Escherichia coli putative transport system permease protein (AAC75239.1); putative ABC-type dipeptide/oligopeptide/nickel transport system permease 2369587..2370681 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238280.1 CDS yejE NC_016856.1 2370681 2371706 D similar to Escherichia coli putative transport system permease protein (AAC75240.1); putative ABC-type dipeptide/oligopeptide/nickel transport system permease component 2370681..2371706 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238281.1 CDS yejF NC_016856.1 2371708 2373297 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC75241.1); contains duplicated ATPase domain; ABC transporter ATP-binding protein 2371708..2373297 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238282.1 CDS yejG NC_016856.1 2373301 2373645 R hypothetical protein complement(2373301..2373645) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238283.1 CDS STM14_2745 NC_016856.1 2373810 2374100 R bicyclomycin/multidrug efflux system protein complement(2373810..2374100) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238284.1 CDS bcr NC_016856.1 2374036 2375226 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein complement(2374036..2375226) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238285.1 CDS rsuA NC_016856.1 2375254 2375949 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A complement(2375254..2375949) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238286.1 CDS yejH NC_016856.1 2376101 2377861 D similar to Escherichia coli putative ATP-dependent helicase (AAC75245.1); putative ATP-dependent helicase 2376101..2377861 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238287.1 CDS rplY NC_016856.1 2377986 2378270 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2377986..2378270 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238288.1 CDS STM14_2750 NC_016856.1 2378246 2378392 R hypothetical protein complement(2378246..2378392) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238289.1 CDS STM14_2751 NC_016856.1 2378379 2378999 R putative inner membrane protein complement(2378379..2378999) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238290.1 CDS yejK NC_016856.1 2379027 2380034 R present in spermidine nucleoids; nucleoid-associated protein NdpA complement(2379027..2380034) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238291.1 CDS yejL NC_016856.1 2380214 2380441 D hypothetical protein 2380214..2380441 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238292.1 CDS yejM NC_016856.1 2380473 2382233 D hypothetical protein in rplY-proL intergenic region (SW:YEJM_SALTY); alkaline phosphatase superfamily; putative hydrolase 2380473..2382233 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238293.1 CDS STM14_2756 NC_016856.1 2382514 2382984 R putative peptidase UmuD; similar to Escherichia coli SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC (AAC74267.1); DNA polymerase V subunit complement(2382514..2382984) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238294.1 CDS STM14_2757 NC_016856.1 2383045 2383335 D similar to virulence protein MsgA (SW:MSGA_SALTY); similar to STM1241; ssrB-regulated factor; virulence protein 2383045..2383335 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238295.1 CDS oafA NC_016856.1 2383683 2385512 D O-antigen five; acetylation of the O-antigen (LPS); O-antigen acetylase 2383683..2385512 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238296.1 CDS STM14_2759 NC_016856.1 2385566 2386009 R putative cytoplasmic protein complement(2385566..2386009) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238297.1 CDS STM14_2760 NC_016856.1 2386387 2386914 R putative phage tail fiber assembly protein complement(2386387..2386914) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238298.1 CDS STM14_2761 NC_016856.1 2386917 2388158 R hypothetical protein complement(2386917..2388158) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238299.1 CDS STM14_2762 NC_016856.1 2388219 2388737 R hypothetical protein complement(2388219..2388737) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238300.1 CDS STM14_2763 NC_016856.1 2388751 2389080 R putative inner membrane protein complement(2388751..2389080) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238301.1 CDS STM14_2764 NC_016856.1 2389094 2389207 R hypothetical protein complement(2389094..2389207) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238302.1 CDS STM14_2765 NC_016856.1 2389377 2390708 D hypothetical protein 2389377..2390708 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238303.2 CDS STM14_2766 NC_016856.1 2390737 2391102 R similar to antiterminator protein Q of phage P5; putative phage antiterminator complement(2390737..2391102) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238304.1 CDS STM14_2767 NC_016856.1 2391120 2392109 R putative cytoplasmic protein complement(2391120..2392109) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238305.1 CDS STM14_2768 NC_016856.1 2392117 2392347 R KilA-N domain protein complement(2392117..2392347) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238306.1 CDS sspH2 NC_016856.1 2392438 2394804 R induced by the SPI-2 regulator ssrA/B; secreted by SPI-2; hypothetical protein complement(2392438..2394804) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238307.1 CDS STM14_2770 NC_016856.1 2394973 2395176 R putative phage tail fiber protein complement(2394973..2395176) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238308.1 CDS STM14_2771 NC_016856.1 2395473 2396264 R similar to Escherichia coli putative membrane protein (AAC74454.1); putative tail fiber protein of phage complement(2395473..2396264) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238309.1 CDS STM14_2772 NC_016856.1 2396453 2396770 D similar to virulence protein MsgA (SW:MSGA_SALTY); similar to STM1241; virulence protein 2396453..2396770 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238310.1 CDS STM14_2773 NC_016856.1 2396962 2397525 R putative outer membrane protein complement(2396962..2397525) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238311.1 CDS STM14_2774 NC_016856.1 2397715 2397861 D hypothetical protein 2397715..2397861 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238312.1 CDS narP NC_016856.1 2398255 2398902 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2398255..2398902 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238313.1 CDS ccmH_1 NC_016856.1 2398946 2399989 R similar to Escherichia coli possible subunit of heme lyase (AAC75254.1); involved in cytochrome c-type biogenesis; putative heme lyase subunit complement(2398946..2399989) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238314.1 CDS ccmG_1 NC_016856.1 2399986 2400543 R similar to Escherichia coli disulfide oxidoreductase; biogenesis of cytochrome c (AAC75255.1); heme lyase/disulfide oxidoreductase complement(2399986..2400543) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238315.1 CDS ccmF_1 NC_016856.1 2400540 2402471 R similar to Escherichia coli cytochrome c-type biogenesis protein (AAC75256.1); cytochrome c-type biogenesis protein complement(2400540..2402471) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238316.1 CDS ccmE_1 NC_016856.1 2402468 2402947 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(2402468..2402947) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238317.1 CDS ccmD_1 NC_016856.1 2402944 2403156 R similar to Escherichia coli heme exporter protein C (AAC75258.1); cytochrome c-type biogenesis protein; heme exporter protein C complement(2402944..2403156) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238318.1 CDS ccmC_1 NC_016856.1 2403153 2403890 R similar to Escherichia coli heme exporter protein C (AAC75259.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein complement(2403153..2403890) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238319.1 CDS ccmB_1 NC_016856.1 2403942 2404601 R similar to Escherichia coli heme exporter protein B; cytochrome c-type biogenesis protein (AAC75260.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein complement(2403942..2404601) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238320.1 CDS ccmA_1 NC_016856.1 2404598 2405215 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(2404598..2405215) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238321.1 CDS napC NC_016856.1 2405236 2405838 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC complement(2405236..2405838) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238322.1 CDS napB NC_016856.1 2405848 2406297 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; diheme cytochrome c550 complement(2405848..2406297) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238323.1 CDS napH NC_016856.1 2406413 2407282 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(2406413..2407282) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238324.1 CDS napG NC_016856.1 2407269 2407964 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(2407269..2407964) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238325.1 CDS napA NC_016856.1 2407971 2410457 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase complement(2407971..2410457) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238326.1 CDS napD NC_016856.1 2410454 2410717 R assembly protein for periplasmic nitrate reductase complement(2410454..2410717) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238327.1 CDS napF NC_016856.1 2410707 2411198 R Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein complement(2410707..2411198) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238328.1 CDS STM14_2791 NC_016856.1 2411310 2411441 D hypothetical protein 2411310..2411441 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238329.1 CDS eco NC_016856.1 2411612 2412106 D similar to Escherichia coli ecotin; serine protease inhibitor (AAC75269.1); ecotin 2411612..2412106 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238330.1 CDS yojI NC_016856.1 2412315 2413958 R efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component complement(2412315..2413958) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238331.1 CDS alkB NC_016856.1 2414034 2414684 R alkylated DNA repair protein ALKB (SW:ALKB_SALTY); specific for alkylated DNA; DNA repair system protein complement(2414034..2414684) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238332.1 CDS ada NC_016856.1 2414687 2415748 R ADA regulatory protein; regulatory protein of adaptative response; (SW:ADA_SALTY); AraC/Xyl family; O6-methylguanine-DNA methyltransferase/transcription activator/repressor complement(2414687..2415748) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238333.1 CDS apbE NC_016856.1 2415829 2416881 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE complement(2415829..2416881) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238334.1 CDS ompC NC_016856.1 2416996 2418132 R allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C complement(2416996..2418132) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238335.1 CDS STM14_2798 NC_016856.1 2418131 2418256 D hypothetical protein 2418131..2418256 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238336.1 CDS yojN NC_016856.1 2418861 2421530 D similar to Escherichia coli putative 2-component sensor protein (AAC75276.1); regulatory protein; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2418861..2421530 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238337.1 CDS rcsB NC_016856.1 2421547 2422197 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2421547..2422197 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238338.1 CDS rcsC NC_016856.1 2422300 2425146 R similar to Escherichia coli sensor for ctr capsule biosynthesis; probable histidine kinase acting on RcsB (AAC75278.1); in two-component regulatory system; regulates colanic capsule biosynthesis; hybrid sensory kinase in two-component regulatory system with RcsB and YojN complement(2422300..2425146) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238339.1 CDS STM14_2803 NC_016856.1 2425164 2425280 R hypothetical protein complement(2425164..2425280) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238340.1 CDS gyrA NC_016856.1 2425264 2427900 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(2425264..2427900) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238341.1 CDS STM14_2805 NC_016856.1 2427980 2428210 D hypothetical protein 2427980..2428210 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238342.1 CDS STM14_2806 NC_016856.1 2428153 2428293 D hypothetical protein 2428153..2428293 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238343.1 CDS STM14_2807 NC_016856.1 2428310 2429512 R similar to Escherichia coli starvation-sensing protein (AAC74653.1); putative dehydratase complement(2428310..2429512) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238344.1 CDS STM14_2808 NC_016856.1 2429527 2430852 R similar to Escherichia coli putative transport protein (AAC75306.1); putative permease complement(2429527..2430852) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238345.1 CDS STM14_2809 NC_016856.1 2430902 2431786 D GntR family; putative regulatory protein 2430902..2431786 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238346.1 CDS ubiG NC_016856.1 2431869 2432597 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2431869..2432597 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238347.1 CDS STM14_2811 NC_016856.1 2432657 2432773 D hypothetical protein 2432657..2432773 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238348.1 CDS nrdA NC_016856.1 2432953 2435238 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2432953..2435238 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238349.1 CDS nrdB NC_016856.1 2435351 2436481 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2435351..2436481 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238350.1 CDS yfaE NC_016856.1 2436481 2436735 D plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin 2436481..2436735 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238351.2 CDS STM14_2815 NC_016856.1 2436737 2437927 R similar to Escherichia coli putative transport (AAC76498.1); putative permease complement(2436737..2437927) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238352.1 CDS STM14_2816 NC_016856.1 2438089 2438967 D LysR family; putative transcriptional regulator 2438089..2438967 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238353.1 CDS glpQ NC_016856.1 2439083 2440153 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(2439083..2440153) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238354.1 CDS glpT NC_016856.1 2440158 2441516 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter complement(2440158..2441516) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238355.1 CDS glpA NC_016856.1 2441789 2443417 D anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 2441789..2443417 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238356.1 CDS glpB NC_016856.1 2443407 2444666 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2443407..2444666 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238357.1 CDS glpC NC_016856.1 2444663 2445853 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2444663..2445853 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238358.1 CDS STM14_2822 NC_016856.1 2445948 2446052 D hypothetical protein 2445948..2446052 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238359.1 CDS STM14_2823 NC_016856.1 2446155 2446358 D hypothetical protein 2446155..2446358 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238360.1 CDS sseL NC_016856.1 2446348 2447301 D ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; deubiquitinase 2446348..2447301 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238361.1 CDS STM14_2825 NC_016856.1 2447411 2447587 R putative cytoplasmic protein complement(2447411..2447587) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238362.1 CDS STM14_2826 NC_016856.1 2447593 2448396 R putative aldolase complement(2447593..2448396) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238363.1 CDS yfaV NC_016856.1 2448422 2449711 R similar to Escherichia coli putative transport protein (AAC75306.1); MFS family; putative transport protein complement(2448422..2449711) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238364.1 CDS yfaW NC_016856.1 2449767 2450984 R similar to Escherichia coli putative racemase (AAC75307.1); putative galactonate dehydratase complement(2449767..2450984) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238365.1 CDS yfaX NC_016856.1 2450986 2451768 R similar to Escherichia coli putative regulator (AAC75308.1); putative transcriptional regulator complement(2450986..2451768) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238366.1 CDS STM14_2830 NC_016856.1 2452018 2453214 R similar to molybdopterin-biosynthesis; competence damage-inducible protein A complement(2452018..2453214) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238367.1 CDS yfaZ NC_016856.1 2453329 2453976 R putative inner membrane protein complement(2453329..2453976) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238368.1 CDS yfaO NC_016856.1 2454150 2454575 D similar to oxidative damage repair enzymes; putative NTP pyrophosphohydrolase 2454150..2454575 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238369.1 CDS ais NC_016856.1 2454620 2455225 R similar to Escherichia coli protein induced by aluminum (AAC75312.1); aluminum-inducible protein complement(2454620..2455225) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238370.1 CDS STM14_2834 NC_016856.1 2455277 2455405 D hypothetical protein 2455277..2455405 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238371.1 CDS yfbE NC_016856.1 2455524 2456663 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2455524..2456663 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238372.1 CDS pmrF NC_016856.1 2456666 2457649 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2456666..2457649 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238373.1 CDS yfbG NC_016856.1 2457646 2459628 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2457646..2459628 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238374.1 CDS STM14_2838 NC_016856.1 2459625 2460524 D putative cytoplasmic protein 2459625..2460524 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238375.1 CDS arnT NC_016856.1 2460521 2462167 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2460521..2462167 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238376.1 CDS STM14_2840 NC_016856.1 2462164 2462499 D putative inner membrane protein 2462164..2462499 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238377.1 CDS STM14_2841 NC_016856.1 2462499 2462876 D similar to Escherichia coli putative transport/receptor protein (AAC75318.1); hypothetical protein 2462499..2462876 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238378.1 CDS pmrD NC_016856.1 2462871 2463128 R polymyxin b resistance protein PmrD (SW:PMRD_SALTY); polymyxin resistance protein B complement(2462871..2463128) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238379.1 CDS menE NC_016856.1 2463226 2464593 R O-succinylbenzoic acid-CoA ligase (SW:MENE_SALTY); O-succinylbenzoic acid--CoA ligase complement(2463226..2464593) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238380.1 CDS menC NC_016856.1 2464590 2465552 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(2464590..2465552) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238381.1 CDS menB NC_016856.1 2465552 2466409 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(2465552..2466409) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238382.1 CDS yfbB NC_016856.1 2466424 2467182 R catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB complement(2466424..2467182) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238383.1 CDS menD NC_016856.1 2467179 2468849 R catalyzes the formation of succinate semialdehyde from 2-oxoglutarate and the synthesis of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate from succinate semialdehyde and isochorismate; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase complement(2467179..2468849) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238384.1 CDS menF NC_016856.1 2468935 2470230 R synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase complement(2468935..2470230) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238385.1 CDS elaB NC_016856.1 2470331 2470642 R hypothetical protein complement(2470331..2470642) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238386.1 CDS elaA NC_016856.1 2470691 2471152 R hypothetical protein complement(2470691..2471152) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238387.1 CDS STM14_2852 NC_016856.1 2472195 2473196 D similar to Escherichia coli positive regulator of CheA protein activity (AAC74957.1); putative chemotaxis signal transduction protein 2472195..2473196 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238388.1 CDS yfbK NC_016856.1 2473237 2475018 R putative von Willebrand factor; contains vWF type A domain; hypothetical protein complement(2473237..2475018) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238389.1 CDS STM14_2854 NC_016856.1 2475407 2475529 R hypothetical protein complement(2475407..2475529) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238390.1 CDS STM14_2855 NC_016856.1 2475538 2475645 D hypothetical protein 2475538..2475645 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238391.1 CDS STM14_2856 NC_016856.1 2475654 2475836 D hypothetical protein 2475654..2475836 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238392.1 CDS nuoN NC_016856.1 2475906 2477363 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit N complement(2475906..2477363) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238393.1 CDS nuoM NC_016856.1 2477370 2478899 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit M complement(2477370..2478899) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238394.1 CDS nuoL NC_016856.1 2479213 2481054 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(2479213..2481054) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238395.1 CDS nuoK NC_016856.1 2481051 2481353 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit K complement(2481051..2481353) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238396.1 CDS nuoJ NC_016856.1 2481350 2481904 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit J complement(2481350..2481904) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238397.1 CDS nuoI NC_016856.1 2481915 2482457 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit I complement(2481915..2482457) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238398.1 CDS nuoH NC_016856.1 2482472 2483449 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit H complement(2482472..2483449) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238399.1 CDS nuoG NC_016856.1 2483446 2486172 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(2483446..2486172) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238400.1 CDS nuoF NC_016856.1 2486203 2487540 R shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F complement(2486203..2487540) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238401.1 CDS nuoE NC_016856.1 2487537 2488037 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit E complement(2487537..2488037) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238402.1 CDS nuoC NC_016856.1 2488040 2489842 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(2488040..2489842) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238403.1 CDS nuoB NC_016856.1 2489929 2490591 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2489929..2490591) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238404.1 CDS nuoA NC_016856.1 2490607 2491050 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A complement(2490607..2491050) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238405.1 CDS STM14_2870 NC_016856.1 2491031 2491153 D hypothetical protein 2491031..2491153 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238406.1 CDS STM14_2871 NC_016856.1 2491241 2491357 R hypothetical protein complement(2491241..2491357) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238407.1 CDS STM14_2872 NC_016856.1 2491445 2491597 R putative cytoplasmic protein complement(2491445..2491597) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238408.1 CDS lrhA NC_016856.1 2491677 2492615 R similar to Escherichia coli NADH dehydrogenase transcriptional regulator; LysR family (AAC75349.1); NADH dehydrogenase transcriptional repressor complement(2491677..2492615) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238409.1 CDS yfbQ NC_016856.1 2493547 2494761 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2493547..2494761 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238410.1 CDS STM14_2875 NC_016856.1 2494855 2495454 D similar to Escherichia coli putative alpha helix protein (AAC75351.1); HD superfamily; hypothetical protein 2494855..2495454 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238411.1 CDS yfbS NC_016856.1 2495546 2497372 R similar to Escherichia coli putative transport protein (AAC75352.1); putative response regulator complement(2495546..2497372) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238412.1 CDS yfbT NC_016856.1 2497449 2498108 R similar to Escherichia coli putative phosphatase (AAC75353.1); putative phosphatase complement(2497449..2498108) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238413.1 CDS yfbU NC_016856.1 2498119 2498613 R hypothetical protein complement(2498119..2498613) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238414.1 CDS STM14_2879 NC_016856.1 2498696 2499151 R hypothetical protein complement(2498696..2499151) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238415.1 CDS STM14_2880 NC_016856.1 2499179 2499430 R hypothetical protein complement(2499179..2499430) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238416.1 CDS STM14_2881 NC_016856.1 2499320 2499454 D hypothetical protein 2499320..2499454 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238417.1 CDS ackA NC_016856.1 2499491 2500693 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2499491..2500693 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238418.1 CDS pta NC_016856.1 2500770 2502914 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2500770..2502914 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238419.1 CDS yfcC NC_016856.1 2503132 2504652 D similar to Escherichia coli putative S-transferase (AAC75358.1); hypothetical protein 2503132..2504652 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238420.1 CDS STM14_2885 NC_016856.1 2504701 2505654 R similar to Escherichia coli 1-deoxyxylulose-5-phosphate synthase; flavoprotein (AAC73523.1); putative transketolase complement(2504701..2505654) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238421.1 CDS STM14_2886 NC_016856.1 2505647 2506477 R similar to Escherichia coli transketolase 1 isozyme (AAC75972.1); putative transketolase complement(2505647..2506477) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238422.1 CDS ulaA_2 NC_016856.1 2506474 2507871 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2506474..2507871) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238423.1 CDS STM14_2888 NC_016856.1 2507886 2508158 R putative cytoplasmic protein complement(2507886..2508158) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238424.1 CDS STM14_2889 NC_016856.1 2508239 2508682 R similar to Escherichia coli putative PTS system enzyme II A component (AAC77152.1); putative PTS system transporter subunit A component complement(2508239..2508682) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238425.1 CDS STM14_2890 NC_016856.1 2508681 2508854 D hypothetical protein 2508681..2508854 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238426.1 CDS STM14_2891 NC_016856.1 2508935 2509954 D similar to Escherichia coli regulator of gluconate (gnt) operon (AAC76463.1); putative transcriptional regulator 2508935..2509954 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238427.1 CDS STM14_2892 NC_016856.1 2509960 2510514 R similar to Escherichia coli putative regulator (AAC75359.1); putative NTP pyrophosphohydrolase complement(2509960..2510514) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238428.1 CDS yfcE NC_016856.1 2510571 2511122 R phosphodiesterase complement(2510571..2511122) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238429.1 CDS yfcF NC_016856.1 2511178 2511822 R putative glutathione S-transferase complement(2511178..2511822) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238430.1 CDS yfcG NC_016856.1 2511965 2512612 D similar to Escherichia coli putative S-transferase (AAC75362.1); putative glutathione S-transferase 2511965..2512612 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238431.1 CDS yfcH NC_016856.1 2512738 2513631 D similar to Escherichia coli putative sugar nucleotide epimerase (AAC75364.1); putative sugar nucleotide epimerase 2512738..2513631 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238432.1 CDS hisP NC_016856.1 2513683 2514459 R histidine transport ATP-binding protein HisP (SW:HISP_SALTY); ABC superfamily ATP-binding protein; histidine/lysine/arginine/ornithine transporter subunit complement(2513683..2514459) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238433.1 CDS hisM NC_016856.1 2514470 2515177 R histidine transport system permease protein HisM (SW:HISM_SALTY); ABC superfamily membrane protein; histidine/lysine/arginine/ornithine transport protein complement(2514470..2515177) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238434.1 CDS hisQ NC_016856.1 2515174 2515860 R histidine transport system permease protein HisQ (SW:HISQ_SALTY); ABC superfamily membrane protein; histidine/lysine/arginine/ornithine transport protein complement(2515174..2515860) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238435.1 CDS hisJ NC_016856.1 2516043 2516825 R histidine-binding periplasmic protein precursor; HBP (SW:HISJ_SALTY); ABC superfamily binding protein; histidine transport protein complement(2516043..2516825) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238436.1 CDS argT NC_016856.1 2517063 2517845 R lysine-arginine-ornithine-binding periplasmic protein precursor; LAO-binding protein (SW:ARGT_SALTY); ABC superfamily binding protein; lysine/arginine/ornithine transport protein complement(2517063..2517845) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238437.1 CDS STM14_2902 NC_016856.1 2517875 2518045 D hypothetical protein 2517875..2518045 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238438.1 CDS ubiX NC_016856.1 2518134 2518703 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2518134..2518703) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238439.1 CDS STM14_2904 NC_016856.1 2518730 2520136 R similar to Escherichia coli putative amino acid/amine transport protein (AAC73363.1); putative amino acid transporter complement(2518730..2520136) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238440.1 CDS STM14_2905 NC_016856.1 2520200 2521303 R putative cytoplasmic protein complement(2520200..2521303) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238441.1 CDS STM14_2906 NC_016856.1 2521305 2522726 R similar to Escherichia coli acid sensitivity protein, putative transporter (AAC74565.1); putative amino acid transporter complement(2521305..2522726) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238442.1 CDS STM14_2907 NC_016856.1 2522817 2524214 R similar to Escherichia coli diaminopimelate decarboxylase (AAC75877.1); putative diaminopimelate decarboxylase complement(2522817..2524214) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238443.1 CDS STM14_2908 NC_016856.1 2524425 2525852 D similar to Escherichia coli response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) (AAC75280.1); putative regulatory protein 2524425..2525852 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238444.1 CDS purF NC_016856.1 2525888 2527405 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2525888..2527405) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238445.1 CDS cvpA NC_016856.1 2527443 2527931 R membrane protein required for colicin V production; colicin V production protein complement(2527443..2527931) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238446.1 CDS STM14_2911 NC_016856.1 2527947 2528102 R hypothetical protein complement(2527947..2528102) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238447.1 CDS dedD NC_016856.1 2528242 2528916 R similar to Escherichia coli putative lipoprotein (AAC75374.1); hypothetical protein complement(2528242..2528916) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238448.1 CDS folC NC_016856.1 2528906 2530174 R similar to Escherichia coli dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase (AAC75375.1); formylTHF polyglutamate synthase activity; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(2528906..2530174) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238449.1 CDS accD NC_016856.1 2530242 2531156 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(2530242..2531156) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238450.1 CDS dedA NC_016856.1 2531306 2531965 R putative DedA family; hypothetical protein complement(2531306..2531965) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238451.1 CDS truA NC_016856.1 2532014 2532826 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2532014..2532826) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238452.1 CDS usg NC_016856.1 2532826 2533839 R similar to Escherichia coli putative PTS system enzyme II A component (AAC75379.1); putative semialdehyde dehydrogenase complement(2532826..2533839) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238453.2 CDS pdxB NC_016856.1 2533907 2535043 R catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase complement(2533907..2535043) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238454.1 CDS flk NC_016856.1 2535147 2536148 D in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2535147..2536148 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238455.1 CDS STM14_2920 NC_016856.1 2536145 2537323 R similar to Escherichia coli putative transport protein (AAC75382.1); hypothetical protein complement(2536145..2537323) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238456.1 CDS STM14_2921 NC_016856.1 2537322 2537438 D hypothetical protein 2537322..2537438 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238457.1 CDS STM14_2922 NC_016856.1 2537503 2537877 R putative cytoplasmic protein complement(2537503..2537877) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238458.1 CDS STM14_2923 NC_016856.1 2538050 2538298 D similar to Escherichia coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); helix-turn-helix; putative regulatory protein 2538050..2538298 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238459.1 CDS STM14_2924 NC_016856.1 2538467 2538835 D putative cytoplasmic protein 2538467..2538835 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238460.1 CDS STM14_2925 NC_016856.1 2538835 2539353 D hypothetical protein 2538835..2539353 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238461.1 CDS STM14_2926 NC_016856.1 2539420 2540076 R putative inner membrane protein complement(2539420..2540076) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238462.1 CDS fabB NC_016856.1 2540174 2541388 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(2540174..2541388) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238463.1 CDS mnmC NC_016856.1 2541548 2543548 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2541548..2543548 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238464.1 CDS yfcL NC_016856.1 2543600 2543875 R putative cytoplasmic protein complement(2543600..2543875) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238465.1 CDS yfcM NC_016856.1 2543908 2544456 R similar to Escherichia coli putative transporting ATPase (AAC75386.1); putative cytoplasmic protein complement(2543908..2544456) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238466.1 CDS yfcA NC_016856.1 2544456 2545265 R similar to Escherichia coli putative structural protein (AAC75387.1); hypothetical protein complement(2544456..2545265) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238467.1 CDS mepA NC_016856.1 2545265 2546089 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(2545265..2546089) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238468.1 CDS aroC NC_016856.1 2546093 2547178 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2546093..2547178) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238469.1 CDS yfcB NC_016856.1 2547214 2548146 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2547214..2548146) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238470.1 CDS yfcN NC_016856.1 2548312 2548863 D contains putative Smr domain; hypothetical protein 2548312..2548863 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238471.1 CDS sixA NC_016856.1 2548963 2549448 R phosphohistidine phosphatase complement(2548963..2549448) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238472.1 CDS fadJ NC_016856.1 2549657 2551804 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(2549657..2551804) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238473.1 CDS fadI NC_016856.1 2551804 2553114 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(2551804..2553114) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238474.1 CDS yfcZ NC_016856.1 2553292 2553576 R putative cytoplasmic protein complement(2553292..2553576) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238475.1 CDS STM14_2940 NC_016856.1 2553683 2553823 D hypothetical protein 2553683..2553823 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238476.1 CDS STM14_2941 NC_016856.1 2553820 2553948 R hypothetical protein complement(2553820..2553948) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238477.1 CDS fadL NC_016856.1 2553941 2555254 D similar to Escherichia coli transport of long-chain fatty acids; sensitivity to phage T2 (AAC75404.1); long-chain fatty acid outer membrane transporter 2553941..2555254 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238478.1 CDS STM14_2943 NC_016856.1 2555315 2556166 R hypothetical protein complement(2555315..2556166) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238479.1 CDS yfdC NC_016856.1 2556359 2557300 D similar to Escherichia coli putative transport (AAC75407.1); hypothetical protein 2556359..2557300 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238480.1 CDS pgtE NC_016856.1 2557607 2558545 R outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease complement(2557607..2558545) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238481.1 CDS pgtA NC_016856.1 2558813 2560060 R phosphoglycerate transport system transcriptional regulatory protein PgtA (SW:PGTA_SALTY); phosphoglycerate transport; activator complement(2558813..2560060) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238482.1 CDS pgtB NC_016856.1 2560050 2562056 R protein for signal transmission; PgtB (SW:PGTB_SALTY); phosphoglycerate transport; phosphoglycerate transport system sensor protein complement(2560050..2562056) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238483.1 CDS pgtC NC_016856.1 2562053 2563363 R protein for signal transmission; PgtC precursor (SW:PGTC_SALTY); phosphoglycerate transport; phosphoglycerate transport regulatory protein precursor complement(2562053..2563363) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238484.1 CDS pgtP NC_016856.1 2563682 2565073 D phosphoglycerate transporter protein (SW:PGTP_SALTY); phosphoglycerate transport; transporter 2563682..2565073 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238485.1 CDS STM14_2951 NC_016856.1 2565349 2565591 R putative inner membrane protein complement(2565349..2565591) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238486.1 CDS STM14_2952 NC_016856.1 2565752 2565865 R hypothetical protein complement(2565752..2565865) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238487.1 CDS ddg NC_016856.1 2566113 2567033 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; lipid A biosynthesis palmitoleoyl acyltransferase 2566113..2567033 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238488.1 CDS yfdZ NC_016856.1 2567557 2568795 R similar to Escherichia coli putative aminotransferase (AAC75438.1); aminotransferase complement(2567557..2568795) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238489.1 CDS STM14_2955 NC_016856.1 2569137 2569283 R hypothetical protein complement(2569137..2569283) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238490.1 CDS glk NC_016856.1 2569516 2570481 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase complement(2569516..2570481) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238491.1 CDS STM14_2957 NC_016856.1 2570685 2571920 D hypothetical protein 2570685..2571920 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238492.1 CDS STM14_2958 NC_016856.1 2571940 2573592 R similar to Escherichia coli acetolactate synthase III; valine sensitive; large subunit (AAC73188.1); putative thiamine pyrophosphate enzymes; indolepyruvate decarboxylase complement(2571940..2573592) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238493.1 CDS STM14_2959 NC_016856.1 2573587 2573775 D hypothetical protein 2573587..2573775 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238494.1 CDS STM14_2960 NC_016856.1 2573772 2574770 D similar to Escherichia coli putative reductase (AAC76037.1); putative oxidoreductase 2573772..2574770 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238495.1 CDS ypeC NC_016856.1 2574884 2575210 D hypothetical protein 2574884..2575210 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238496.1 CDS mntH NC_016856.1 2575271 2576512 R manganese transport protein MntH (SW:MNTH_SALTY); Nramp family; manganese transport protein MntH complement(2575271..2576512) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238497.1 CDS nupC NC_016856.1 2576855 2578057 D similar to Escherichia coli permease of transport system for 3 nucleosides (AAC75452.1); NUP family; nucleoside transport 2576855..2578057 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238498.1 CDS yfeA NC_016856.1 2578110 2580299 R putative diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein complement(2578110..2580299) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238499.1 CDS yfeC NC_016856.1 2580905 2581267 D putative negative regulator 2580905..2581267 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238500.1 CDS yfeD NC_016856.1 2581269 2581661 D putative negative regulator 2581269..2581661 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238501.1 CDS gltX NC_016856.1 2581715 2583130 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2581715..2583130) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238502.1 CDS xapR NC_016856.1 2583946 2584830 R similar to Escherichia coli regulator for xapA (AAC75458.1); LysR family; DNA-binding transcriptional activator XapR complement(2583946..2584830) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238503.1 CDS STM14_2975 NC_016856.1 2584882 2585040 R hypothetical protein complement(2584882..2585040) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238504.1 CDS xapB NC_016856.1 2585099 2586355 R similar to Escherichia coli xanthosine permease (AAC75459.1); MFS superfamily; xanthosine permease complement(2585099..2586355) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238505.1 CDS STM14_2977 NC_016856.1 2586410 2587333 R xanthosine phosphorylase complement(2586410..2587333) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238506.1 CDS yfeN NC_016856.1 2587499 2588260 D similar to Escherichia coli putative sugar hydrolase (AAC75461.1); hypothetical protein 2587499..2588260 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238507.1 CDS yfeR NC_016856.1 2588322 2589248 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75462.1); LysR family; putative transcriptional regulator complement(2588322..2589248) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238508.1 CDS yfeH NC_016856.1 2589338 2590336 D similar to Escherichia coli putative cytochrome oxidase (AAC75463.1); putative Na+-dependent transporter 2589338..2590336 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238509.1 CDS STM14_2981 NC_016856.1 2590333 2590560 R putative cytoplasmic protein complement(2590333..2590560) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238510.1 CDS ligA NC_016856.1 2590553 2592568 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2590553..2592568) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238511.1 CDS zipA NC_016856.1 2592640 2593626 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(2592640..2593626) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238512.1 CDS cysZ NC_016856.1 2593747 2594619 D putative role in sulfur assimilation; putative sulfate transport protein CysZ 2593747..2594619 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238513.1 CDS cysK NC_016856.1 2594783 2595754 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2594783..2595754 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238514.1 CDS STM14_2986 NC_016856.1 2595762 2595923 D hypothetical protein 2595762..2595923 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238515.2 CDS STM14_2987 NC_016856.1 2595873 2595998 R hypothetical protein complement(2595873..2595998) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238516.1 CDS STM14_2988 NC_016856.1 2595966 2596094 D hypothetical protein 2595966..2596094 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238517.1 CDS ptsH NC_016856.1 2596138 2596395 D phosphocarrier protein HPR; histidine-containing protein (SW:PTHP_ECOLI); PTS family, Hpr protein; phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) 2596138..2596395 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238518.1 CDS ptsI NC_016856.1 2596444 2598171 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 2596444..2598171 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238519.1 CDS crr NC_016856.1 2598212 2598721 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; glucose-specific PTS system component 2598212..2598721 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238520.1 CDS STM14_2992 NC_016856.1 2598870 2599109 R putative cytoplasmic protein complement(2598870..2599109) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238521.1 CDS pdxK NC_016856.1 2599106 2599972 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase complement(2599106..2599972) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238522.1 CDS ptsJ NC_016856.1 2600055 2601347 D putative transcriptional regulator PtsJ (SW:PTSJ_SALTY); GntR family; putative regulatory protein 2600055..2601347 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238523.1 CDS yfeJ NC_016856.1 2601362 2602081 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2601362..2602081 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238524.1 CDS yfeK NC_016856.1 2602140 2602520 D hypothetical 13.3 kDa protein in pdxK-cysM intergenic region (SW:YFEK_SALTY); hypothetical protein 2602140..2602520 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238525.1 CDS yfeL NC_016856.1 2602533 2603072 D hypothetical 20.5 kDa protein in pdxK-cysM intergenic region (SW:YFEL_SALTY); penicillin-binding protein; putative membrane carboxypeptidase 2602533..2603072 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238526.1 CDS cysM NC_016856.1 2603203 2604114 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(2603203..2604114) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238527.1 CDS cysA NC_016856.1 2604182 2605279 R sulfate transport atp-binding protein CYSA (SW:CYSA_SALTY); ABC superfamily ATP-binding protein; chromate resistance; sulfate/thiosulfate transporter subunit complement(2604182..2605279) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238528.1 CDS cysW NC_016856.1 2605269 2606144 R Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit complement(2605269..2606144) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238529.1 CDS cysU NC_016856.1 2606144 2606977 R similar to Escherichia coli sulfate, thiosulfate transport system permease T protein (AAC75477.1); ABC superfamily membrane protein; sulfate/thiosulfate transporter subunit complement(2606144..2606977) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238530.1 CDS cysP NC_016856.1 2606977 2607993 R thiosulfate-binding protein precursor (SW:CYSP_SALTY); ABC superfamily binding protein; thiosulfate transporter subunit complement(2606977..2607993) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238531.1 CDS ucpA NC_016856.1 2608151 2608942 R similar to Escherichia coli putative oxidoreductase (AAC75479.1); short chain dehydrogenase complement(2608151..2608942) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238532.1 CDS STM14_3004 NC_016856.1 2609180 2610079 R putative iron-dependent peroxidase complement(2609180..2610079) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238533.1 CDS STM14_3005 NC_016856.1 2610174 2610749 R hypothetical protein complement(2610174..2610749) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238534.1 CDS yfeZ NC_016856.1 2610811 2611260 R putative inner membrane protein complement(2610811..2611260) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238535.2 CDS STM14_3007 NC_016856.1 2611247 2611672 R putative acetyltransferase complement(2611247..2611672) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238536.1 CDS amiA NC_016856.1 2611885 2612754 D probable N-acetylmuramoyl-L-alanine amidase AMIA precursor (SW:AMIA_SALTY); N-acetylmuramoyl-l-alanine amidase I 2611885..2612754 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238537.1 CDS hemF NC_016856.1 2612757 2613656 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2612757..2613656 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238538.1 CDS STM14_3010 NC_016856.1 2613677 2614006 D hypothetical protein in eutR-hemF intergenic region; ORF33 (SW:YPFK_SALTY); putative inner membrane protein 2613677..2614006 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238539.1 CDS STM14_3011 NC_016856.1 2614135 2615412 D hypothetical 30.0 kDa protein in eutR-hemF intergenic region (ORF79) (SW:YPFL_SALTY); putative cytoplasmic protein 2614135..2615412 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238540.1 CDS eutR NC_016856.1 2615612 2616664 R activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR complement(2615612..2616664) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238541.1 CDS eutK NC_016856.1 2616712 2617206 R ethanolamine utilization protein EutK precursor (SW:EUTK_SALTY); putative carboxysome structural protein complement(2616712..2617206) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238542.1 CDS eutL NC_016856.1 2617219 2617878 R ethanolamine utilization protein EutL (SW:EUTL_SALTY); putative carboxysome structural protein complement(2617219..2617878) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238543.1 CDS eutC NC_016856.1 2617888 2618784 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(2617888..2618784) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238544.1 CDS eutB NC_016856.1 2618803 2620164 R ethanolamine ammonia-lyase heavy chain (SW:EUTB_SALTY); ethanolamine ammonia-lyase heavy chain complement(2618803..2620164) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238545.1 CDS eutA NC_016856.1 2620176 2621579 R ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase complement(2620176..2621579) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238546.1 CDS eutH NC_016856.1 2621576 2622802 R ethanolamine utilization protein EutH (SW:EUTH_SALTY); putative transport protein complement(2621576..2622802) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238547.1 CDS eutG NC_016856.1 2622922 2624109 R ethanolamine utilization protein EutG (SW:EUTG_SALTY); putative transport protein complement(2622922..2624109) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238548.1 CDS eutJ NC_016856.1 2624099 2624938 R EutJ (SW:EUTJ_SALTY); putative heatshock protein 70; ethanolamine utilization protein complement(2624099..2624938) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238549.1 CDS eutE NC_016856.1 2624949 2626352 R invovled in ethanolamine utilization protein EutE (SW:EUTE_SALTY); putative aldehyde oxidoreductase complement(2624949..2626352) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238550.2 CDS eutN NC_016856.1 2626364 2626651 R involved in ethanolamine utilization protein EutN (SW:EUTN_SALTY); putative detox protein complement(2626364..2626651) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238551.1 CDS eutM NC_016856.1 2626764 2627054 R involved in ethanolamine utilization protein EutM precursor (SW:EUTM_SALTY); putative detox protein complement(2626764..2627054) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238552.1 CDS eutD NC_016856.1 2627095 2628111 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(2627095..2628111) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238553.1 CDS eutT NC_016856.1 2628108 2628911 R ethanolamine utilization cobalamin adenosyltransferase (SW:EUTT_SALTY); putative cobalamin adenosyltransferase complement(2628108..2628911) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238554.1 CDS eutQ NC_016856.1 2628908 2629597 R ethanolamine utilization protein EutQ (SW:EUTQ_SALTY); putative ethanolamine utilization protein complement(2628908..2629597) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238555.1 CDS eutP NC_016856.1 2629575 2630054 R ethanolamine utilization protein EutP (SW:EUTP_SALTY); putative ethanolamine utilization protein complement(2629575..2630054) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238556.1 CDS eutS NC_016856.1 2630067 2630402 R ethanolamine utilization protein EutS (SW:EUTS_SALTY); putative carboxysome structural protein complement(2630067..2630402) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238557.1 CDS tnpA_8 NC_016856.1 2630883 2631341 R transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase complement(2630883..2631341) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238558.1 CDS STM14_3030 NC_016856.1 2631298 2631486 R hypothetical protein complement(2631298..2631486) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238559.1 CDS maeB NC_016856.1 2631531 2633810 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(2631531..2633810) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238560.1 CDS STM14_3032 NC_016856.1 2633812 2634012 D hypothetical protein 2633812..2634012 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238561.1 CDS talA NC_016856.1 2634082 2635032 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase A 2634082..2635032 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238562.1 CDS tktB NC_016856.1 2635052 2637052 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2635052..2637052 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238563.1 CDS STM14_3035 NC_016856.1 2637115 2637345 R putative cytoplasmic protein complement(2637115..2637345) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238564.1 CDS STM14_3036 NC_016856.1 2637342 2637476 R hypothetical protein complement(2637342..2637476) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238565.1 CDS ypfG NC_016856.1 2637473 2638516 R hypothetical protein complement(2637473..2638516) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238566.1 CDS yffH NC_016856.1 2638641 2639216 R putative pyrophosphohydrolase complement(2638641..2639216) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238567.1 CDS STM14_3039 NC_016856.1 2639420 2640718 D similar to Escherichia coli putative beta-lactamase (AAC75483.1); hypothetical protein 2639420..2640718 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238568.1 CDS STM14_3040 NC_016856.1 2640806 2640913 D hypothetical protein 2640806..2640913 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238569.1 CDS aegA NC_016856.1 2641167 2643128 R unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); putative oxidoreductase Fe-S binding subunit complement(2641167..2643128) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238570.2 CDS narQ NC_016856.1 2643314 2645014 D similar to Escherichia coli sensor for nitrate reductase system; protein histidine kinase; acts on NarP and narL (AAC75522.1); in two-component regulatory system; nitrate/nitrite sensor protein NarQ 2643314..2645014 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238571.1 CDS STM14_3043 NC_016856.1 2645096 2645227 R hypothetical protein complement(2645096..2645227) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238572.1 CDS acrD NC_016856.1 2645199 2648312 D similar to Escherichia coli protein that results in sensitivity to acriflavine; integral membrane protein; possible efflux pump (AAC75523.1); RND family; aminoglycoside/multidrug efflux system 2645199..2648312 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238573.1 CDS yffB NC_016856.1 2648886 2649242 D hypothetical protein 2648886..2649242 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238574.1 CDS dapE NC_016856.1 2649246 2650373 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2649246..2650373 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238575.1 CDS STM14_3047 NC_016856.1 2650401 2650601 D hypothetical protein 2650401..2650601 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238576.1 CDS ypfI NC_016856.1 2650628 2652646 R putative acetyltransferase complement(2650628..2652646) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238577.1 CDS STM14_3049 NC_016856.1 2652662 2653525 R putative inner membrane protein complement(2652662..2653525) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238578.1 CDS purC NC_016856.1 2653656 2654369 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(2653656..2654369) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238579.1 CDS nlpB NC_016856.1 2654544 2655578 R similar to Escherichia coli lipoprotein-34 (AAC75530.1); lipoprotein complement(2654544..2655578) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238580.1 CDS dapA NC_016856.1 2655595 2656473 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2655595..2656473) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238581.1 CDS gcvR NC_016856.1 2656619 2657191 D negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2656619..2657191 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238582.1 CDS bcp NC_016856.1 2657191 2657661 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2657191..2657661 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238583.1 CDS STM14_3055 NC_016856.1 2657708 2658061 R putative glycerate kinase complement(2657708..2658061) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238584.1 CDS STM14_3056 NC_016856.1 2657883 2658191 R hypothetical protein complement(2657883..2658191) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238585.1 CDS perM NC_016856.1 2658248 2659315 R similar to Escherichia coli putative permease (AAC75546.1); PerM family; putative permease complement(2658248..2659315) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238586.1 CDS STM14_3058 NC_016856.1 2659523 2660986 D putative inner membrane or exported protein; hypothetical protein 2659523..2660986 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238587.1 CDS yfgD NC_016856.1 2661026 2661385 D similar to Escherichia coli putative oxidoreductase (AAC75548.1); putative arsenate reductase 2661026..2661385 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238588.1 CDS yfgE NC_016856.1 2661412 2662137 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor complement(2661412..2662137) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238589.1 CDS uraA NC_016856.1 2662208 2663497 R similar to Escherichia coli uracil transport (AAC75550.1); NCS2 family; uracil transporter complement(2662208..2663497) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238590.1 CDS upp NC_016856.1 2663585 2664211 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2663585..2664211) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238591.1 CDS STM14_3063 NC_016856.1 2664349 2664552 R hypothetical protein complement(2664349..2664552) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238592.1 CDS purM NC_016856.1 2664610 2665662 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2664610..2665662 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238593.1 CDS purN NC_016856.1 2665662 2666300 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2665662..2666300 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238594.1 CDS ppk NC_016856.1 2666489 2668555 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2666489..2668555 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238595.1 CDS ppx NC_016856.1 2668560 2670101 D similar to Escherichia coli exopolyphosphatase (AAC75555.1); exopolyphosphatase 2668560..2670101 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238596.1 CDS STM14_3068 NC_016856.1 2670137 2672350 R similar to Escherichia coli putative cytochrome C-type biogenesis protein (AAC75556.1); putative diguanylate cyclase complement(2670137..2672350) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238597.1 CDS STM14_3069 NC_016856.1 2672447 2672584 R putative cytoplasmic protein complement(2672447..2672584) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238598.1 CDS STM14_3070 NC_016856.1 2672655 2672915 R putative inner membrane protein complement(2672655..2672915) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238599.1 CDS STM14_3071 NC_016856.1 2672763 2672954 D putative inner membrane protein 2672763..2672954 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238600.1 CDS STM14_3072 NC_016856.1 2673033 2673269 R putative inner membrane protein complement(2673033..2673269) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238601.2 CDS STM14_3073 NC_016856.1 2673510 2673824 D similar to STM2011 and STM2902; putative cytoplasmic protein 2673510..2673824 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238602.1 CDS STM14_3074 NC_016856.1 2673844 2674200 R similar to Escherichia coli IS3 putative transposase (AAC75150.1); putative transposase complement(2673844..2674200) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238603.1 CDS guaA NC_016856.1 2674357 2675934 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; bifunctional GMP synthase/glutamine amidotransferase protein complement(2674357..2675934) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238604.1 CDS guaB NC_016856.1 2676004 2677554 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inositol-5-monophosphate dehydrogenase complement(2676004..2677554) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238605.1 CDS xseA NC_016856.1 2677631 2678980 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2677631..2678980 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238606.1 CDS shdA NC_016856.1 2679142 2685111 R ShdA (gi|5107805); similar to the C-terminal region of AIDA; IcsA; subspecies I-specific; Peyer's patch colonization and shedding factor; AIDA autotransporter-like protein complement(2679142..2685111) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238607.1 CDS STM14_3079 NC_016856.1 2685671 2685784 D hypothetical protein 2685671..2685784 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238608.1 CDS STM14_3080 NC_016856.1 2685675 2685857 D hypothetical protein 2685675..2685857 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238609.1 CDS STM14_3081 NC_016856.1 2685854 2685967 R hypothetical protein complement(2685854..2685967) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238610.1 CDS ratA NC_016856.1 2693427 2699024 R RatA (gi|4583529); putative outer membrane protein complement(2693427..2699024) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238611.1 CDS sinI NC_016856.1 2699144 2700103 R SinI (gi|4583530); putative outer membrane protein complement(2699144..2700103) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238612.1 CDS sinH NC_016856.1 2700161 2702353 R SinH (gi|4583531); similar to Escherichia coli intimin and Yersinia pestis invasin proteins; intimin-like protein complement(2700161..2702353) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238613.1 CDS STM14_3086 NC_016856.1 2702354 2702470 D hypothetical protein 2702354..2702470 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238614.1 CDS STM14_3087 NC_016856.1 2702529 2702684 R hypothetical protein complement(2702529..2702684) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238615.1 CDS yfgJ NC_016856.1 2702699 2702920 R putative cytoplasmic protein complement(2702699..2702920) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238616.1 CDS engA NC_016856.1 2703009 2704481 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2703009..2704481) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238617.1 CDS STM14_3090 NC_016856.1 2704480 2704581 D hypothetical protein 2704480..2704581 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238618.1 CDS yfgL NC_016856.1 2704600 2705778 R with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL complement(2704600..2705778) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238619.1 CDS yfgM NC_016856.1 2705789 2706409 R putative inner membrane protein complement(2705789..2706409) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238620.1 CDS hisS NC_016856.1 2706423 2707697 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(2706423..2707697) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238621.1 CDS ispG NC_016856.1 2707808 2708926 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2707808..2708926) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238622.1 CDS yfgA NC_016856.1 2708953 2709957 R similar to Escherichia coli putative membrane protein (AAC75569.1); hypothetical protein complement(2708953..2709957) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238623.1 CDS STM14_3096 NC_016856.1 2710094 2710216 R type IV pilus biogenesis/stability protein PilW complement(2710094..2710216) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238624.1 CDS yfgB NC_016856.1 2710249 2711415 R hypothetical protein complement(2710249..2711415) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238625.1 CDS ndk NC_016856.1 2711622 2712053 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2711622..2712053) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238626.1 CDS STM14_3099 NC_016856.1 2712052 2712147 D hypothetical protein 2712052..2712147 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238627.1 CDS STM14_3100 NC_016856.1 2712174 2713037 R similar to Escherichia coli hydrogenase 4 Fe-S subunit (AAC75541.1); putative polyferredoxin complement(2712174..2713037) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238628.1 CDS STM14_3101 NC_016856.1 2713037 2713846 R similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); putative dimethylsulfoxide reductase complement(2713037..2713846) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238629.1 CDS STM14_3102 NC_016856.1 2713839 2714468 R similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative anaerobic dimethylsulfoxide reductase complement(2713839..2714468) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238630.1 CDS STM14_3103 NC_016856.1 2714465 2716870 R similar to Escherichia coli putative oxidoreductase, major subunit (AAC74660.1); putative anaerobic dimethylsulfoxide reductase complement(2714465..2716870) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238631.1 CDS pbpC NC_016856.1 2716999 2719314 R penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C complement(2716999..2719314) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238632.1 CDS STM14_3105 NC_016856.1 2719315 2724249 R putative inner membrane lipoprotein complement(2719315..2724249) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238633.1 CDS sseA NC_016856.1 2724458 2725300 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2724458..2725300 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238634.1 CDS STM14_3107 NC_016856.1 2725280 2725504 R hypothetical protein complement(2725280..2725504) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238635.1 CDS STM14_3108 NC_016856.1 2725547 2726215 D putative cytoplasmic protein 2725547..2726215 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238636.1 CDS STM14_3109 NC_016856.1 2726253 2726387 R hypothetical protein complement(2726253..2726387) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238637.1 CDS sseB NC_016856.1 2726784 2727569 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB complement(2726784..2727569) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238638.1 CDS pepB NC_016856.1 2727670 2728953 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B complement(2727670..2728953) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238639.1 CDS yfhJ NC_016856.1 2729200 2729400 R believed to be involved in assembly of Fe-S clusters; hypothetical protein complement(2729200..2729400) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238640.1 CDS fdx NC_016856.1 2729412 2729747 R similar to Escherichia coli 2FE-2S ferredoxin, electron carrer protein (AAC75578.1); believed to be involved in assembly of Fe-S clusters; electron carrer protein complement(2729412..2729747) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238641.1 CDS hscA NC_016856.1 2729749 2731599 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2729749..2731599) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238642.1 CDS hscB NC_016856.1 2731612 2732127 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(2731612..2732127) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238643.1 CDS iscA NC_016856.1 2732323 2732646 R forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein complement(2732323..2732646) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238644.1 CDS nifU NC_016856.1 2732675 2733061 R similar to NifU; involved in Fe-S cluster formation; scaffold protein complement(2732675..2733061) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238645.1 CDS nifS NC_016856.1 2733089 2734303 R catalyzes the removal of sulfur from cysteine to form alanine; cysteine desulfurase complement(2733089..2734303) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238646.1 CDS STM14_3119 NC_016856.1 2734356 2734475 D hypothetical protein 2734356..2734475 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238647.1 CDS yfhP NC_016856.1 2734484 2734978 R regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR complement(2734484..2734978) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238648.1 CDS STM14_3121 NC_016856.1 2735138 2735869 R similar to Escherichia coli putative ATP synthase beta subunit (AAC75585.1); putative rRNA methylase complement(2735138..2735869) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238649.1 CDS STM14_3122 NC_016856.1 2735856 2735978 D hypothetical protein 2735856..2735978 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238650.1 CDS STM14_3123 NC_016856.1 2735883 2735993 R hypothetical protein complement(2735883..2735993) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238651.1 CDS suhB NC_016856.1 2735988 2736791 D similar to Escherichia coli enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action (AAC75586.1); inositol monophosphatase 2735988..2736791 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238652.1 CDS STM14_3125 NC_016856.1 2736936 2737814 D similar to Escherichia coli putative enzyme (AAC75587.1); putative hydrolase 2736936..2737814 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238653.1 CDS asrA NC_016856.1 2737996 2739039 D anaerobic sulfite reductase subunit A (anaerobic sulfite reductaseiron-sulfur subunit) (SW:ASRA_SALTY); anaerobic sulfide reductase 2737996..2739039 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238654.1 CDS asrB NC_016856.1 2739043 2739861 D with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2739043..2739861 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238655.1 CDS asrC NC_016856.1 2739872 2740885 D anaerobic sulfite reductase subunit C (SW:ASRC_SALTY); anaerobic sulfide reductase 2739872..2740885 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238656.1 CDS STM14_3129 NC_016856.1 2740886 2741872 R putative inner membrane protein complement(2740886..2741872) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238657.1 CDS STM14_3130 NC_016856.1 2741863 2742501 R putative periplasmic protein; hypothetical protein complement(2741863..2742501) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238658.1 CDS csiE NC_016856.1 2742627 2743904 D stationary phase inducible protein CsiE 2742627..2743904 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238659.1 CDS hcaT NC_016856.1 2743899 2745038 R putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; putative 3-phenylpropionic acid transporter complement(2743899..2745038) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238660.1 CDS glyA NC_016856.1 2745234 2746487 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2745234..2746487) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238661.1 CDS STM14_3134 NC_016856.1 2746625 2746771 R hypothetical protein complement(2746625..2746771) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238662.1 CDS hmpA NC_016856.1 2746812 2748002 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2746812..2748002 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238663.1 CDS cadC NC_016856.1 2748184 2749728 D regulates the cadBA operon; DNA-binding transcriptional activator CadC 2748184..2749728 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238664.1 CDS cadB NC_016856.1 2750089 2751420 D antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2750089..2751420 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238665.1 CDS cadA NC_016856.1 2751503 2753647 D lysine decarboxylase; inducible (SW:DCLY_SALTY); lysine decarboxylase 1 2751503..2753647 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238666.1 CDS yjdL NC_016856.1 2753703 2755163 D similar to Escherichia coli putative peptide transporter (AAC77091.1); POT family; putative di-/tripeptide transport protein 2753703..2755163 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238667.1 CDS glnB NC_016856.1 2755212 2755550 R indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 complement(2755212..2755550) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238668.1 CDS yfhA NC_016856.1 2755627 2756964 R similar to Escherichia coli putative 2-component transcriptional regulator (AAC75607.1); regulator of two-component regulator protein; EBP family; putative transcriptional regulator complement(2755627..2756964) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238669.1 CDS yfhG NC_016856.1 2756961 2757725 R similar to Escherichia coli putative alpha helix protein (AAC75608.1); regulator of two-component regulator protein; EBP familiiy; hypothetical protein complement(2756961..2757725) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238670.1 CDS yfhK NC_016856.1 2757727 2759169 R similar to Escherichia coli putative 2-component sensor protein (AAC75609.1); regulatory protein; putative sensor kinase complement(2757727..2759169) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238671.1 CDS STM14_3144 NC_016856.1 2759420 2759548 D hypothetical protein 2759420..2759548 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238672.1 CDS purG NC_016856.1 2759807 2763694 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2759807..2763694) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238673.1 CDS STM14_3146 NC_016856.1 2763716 2763949 D hypothetical protein 2763716..2763949 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238674.1 CDS yfhD NC_016856.1 2763950 2765494 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 2763950..2765494 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238675.1 CDS yfhC NC_016856.1 2765545 2766096 R similar to Escherichia coli putative deaminase (AAC75612.1); tRNA-specific adenosine deaminase complement(2765545..2766096) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238676.1 CDS yfhB NC_016856.1 2766121 2766756 R hypothetical protein complement(2766121..2766756) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238677.1 CDS STM14_3150 NC_016856.1 2766760 2768121 R similar to Escherichia coli putative PTS enzyme II (AAC75482.1); putative phosphotransferase system IIB component complement(2766760..2768121) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238678.1 CDS murQ NC_016856.1 2768132 2769025 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(2768132..2769025) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238679.1 CDS yfhH NC_016856.1 2769141 2769989 D putative ABC superfamily membrane protein; putative DNA-binding transcriptional regulator 2769141..2769989 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238680.1 CDS STM14_3153 NC_016856.1 2770028 2770945 R catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase complement(2770028..2770945) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238681.1 CDS STM14_3154 NC_016856.1 2770967 2772163 R similar to Escherichia coli putative resistance protein (AAC76571.1); putative permease complement(2770967..2772163) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238682.1 CDS STM14_3155 NC_016856.1 2772279 2773205 D similar to Escherichia coli cyn operon positive regulator (AAC73441.1); LysR family; putative transcriptional regulator 2772279..2773205 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238683.1 CDS yfhL NC_016856.1 2773243 2773503 D putative ferredoxin 2773243..2773503 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238684.1 CDS acpS NC_016856.1 2773615 2773995 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(2773615..2773995) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238685.1 CDS pdxJ NC_016856.1 2773995 2774726 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxal phosphate biosynthetic protein PdxJ complement(2773995..2774726) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238686.1 CDS recO NC_016856.1 2774738 2775466 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2774738..2775466) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238687.1 CDS era NC_016856.1 2775478 2776383 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2775478..2776383) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238688.1 CDS rnc NC_016856.1 2776380 2777060 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(2776380..2777060) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238689.1 CDS lepB NC_016856.1 2777334 2778308 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I complement(2777334..2778308) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238690.1 CDS lepA NC_016856.1 2778325 2780124 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2778325..2780124) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238691.1 CDS gogB NC_016856.1 2780529 2782022 D leucine-rich repeat protein; hypothetical protein 2780529..2782022 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238692.1 CDS STM14_3165 NC_016856.1 2782226 2782354 R hypothetical protein complement(2782226..2782354) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238693.1 CDS STM14_3166 NC_016856.1 2782885 2783430 D similar to transposase; transposase-like protein 2782885..2783430 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238694.1 CDS STM14_3167 NC_016856.1 2784542 2784769 D similar to pagK; PagK-like protein 2784542..2784769 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238695.1 CDS STM14_3168 NC_016856.1 2784866 2785444 R phage tail assembly protein (gi|2460256); phage tail assembly-like protein complement(2784866..2785444) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238696.1 CDS STM14_3169 NC_016856.1 2785434 2786258 R phage tail assembly protein (gi|2460256); phage tail assembly-like protein complement(2785434..2786258) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238697.1 CDS STM14_3170 NC_016856.1 2786255 2788627 R similar to Escherichia coli putative membrane protein (AAC74454.1); tail fiber-like protein complement(2786255..2788627) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238698.2 CDS STM14_3171 NC_016856.1 2788681 2788923 R hypothetical protein complement(2788681..2788923) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238699.1 CDS STM14_3172 NC_016856.1 2788962 2792324 R similar to host specificity protein-J in phage lambda; host specificity protein-J-like protein complement(2788962..2792324) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238700.1 CDS STM14_3173 NC_016856.1 2792386 2793033 R similar to tail assembly protein I in phage lambda; tail assembly protein I-like protein complement(2792386..2793033) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238701.1 CDS STM14_3174 NC_016856.1 2792931 2793668 R similar to tail assembly protein K in phage lambda; tail assembly protein K-like protein complement(2792931..2793668) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238702.1 CDS STM14_3175 NC_016856.1 2793675 2794373 R similar to phage tail component L; phage tail component L-like protein complement(2793675..2794373) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238703.1 CDS STM14_3176 NC_016856.1 2794383 2794712 R similar to lambda phage M tail component (gi|2232363); phage tail component M-like protein complement(2794383..2794712) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238704.1 CDS STM14_3177 NC_016856.1 2794715 2797810 R similar to lambda phage tail component H (gi|2232364); phage tail component H-like protein complement(2794715..2797810) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238705.1 CDS STM14_3178 NC_016856.1 2797782 2798120 R similar to minor tail protein; minor tail-like protein complement(2797782..2798120) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238706.1 CDS STM14_3179 NC_016856.1 2798117 2798512 R similar to minor tail protein; minor tail-like protein complement(2798117..2798512) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238707.2 CDS STM14_3180 NC_016856.1 2798563 2799306 R similar to major tail protein; major tail-like protein complement(2798563..2799306) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238708.1 CDS STM14_3181 NC_016856.1 2799317 2799718 R hypothetical protein complement(2799317..2799718) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238709.2 CDS STM14_3182 NC_016856.1 2799827 2800957 D similar to Escherichia coli putative virulence protein (AAC74514.1); putative virulence protein 2799827..2800957 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238710.1 CDS STM14_3183 NC_016856.1 2801006 2801584 R similar to minor tail protein Z; minor tail protein Z-like protein complement(2801006..2801584) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238711.1 CDS STM14_3184 NC_016856.1 2801612 2801995 R similar to minor capsid protein FII of phage N15; minor capsid protein FII complement(2801612..2801995) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238712.1 CDS STM14_3186 NC_016856.1 2802428 2803456 R similar to head protein gp7 of phage 21; phage head-like protein complement(2802428..2803456) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238713.1 CDS STM14_3187 NC_016856.1 2803511 2803858 R similar to head protein gpshp of phage 21; phage head-like protein complement(2803511..2803858) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238714.1 CDS STM14_3188 NC_016856.1 2803871 2805367 R similar to head-tail preconnector gp5 of phage 21; similar to Escherichia coli putative protease (AAC74354.1); head-tail preconnector-like protein complement(2803871..2805367) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238715.1 CDS STM14_3189 NC_016856.1 2805357 2806937 R similar to head-tail preconnector gp4 of phage 21; head-tail preconnector-like protein complement(2805357..2806937) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238716.1 CDS STM14_3190 NC_016856.1 2806934 2807137 R similar to head to tail joining protein; head-to-tail joining-like protein complement(2806934..2807137) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238717.1 CDS STM14_3191 NC_016856.1 2807121 2809052 R similar to terminase large chain gp2 of N15; terminase-like large protein complement(2807121..2809052) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238718.1 CDS STM14_3192 NC_016856.1 2809024 2809569 R similar to DNA packaging protein Nu1 of phage 21; similar to Qin prophage packaging protein NU1 (AAC74621.1); DNA packaging-like protein complement(2809024..2809569) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238719.1 CDS STM14_3193 NC_016856.1 2809856 2810257 D hypothetical protein 2809856..2810257 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238720.1 CDS STM14_3194 NC_016856.1 2810493 2810966 R similar to Escherichia coli bacteriophage lambda endopeptidase (AAC73657.1); endopeptidase-like protein complement(2810493..2810966) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238721.1 CDS STM14_3195 NC_016856.1 2810963 2811415 R similar to morphogenesis protein of phage B103; similar to Escherichia coli bacteriophage lambda lysozyme (AAC73656.1); morphogenesis-like protein complement(2810963..2811415) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238722.1 CDS STM14_3196 NC_016856.1 2811399 2811728 R hypothetical protein complement(2811399..2811728) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238723.1 CDS STM14_3197 NC_016856.1 2811771 2811908 D hypothetical protein 2811771..2811908 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238724.1 CDS STM14_3198 NC_016856.1 2812004 2812690 D hypothetical protein 2812004..2812690 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238725.1 CDS STM14_3199 NC_016856.1 2812905 2813093 R hypothetical protein complement(2812905..2813093) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238726.1 CDS STM14_3201 NC_016856.1 2813600 2814163 R similar to antirepressor protein of phage P22; antirepressor-like protein complement(2813600..2814163) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238727.1 CDS STM14_3202 NC_016856.1 2814160 2814285 R hypothetical protein complement(2814160..2814285) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238728.1 CDS STM14_3203 NC_016856.1 2814436 2815113 R similar to antiterminator Q; antiterminator-like protein complement(2814436..2815113) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238729.1 CDS STM14_3204 NC_016856.1 2815110 2815250 R hypothetical protein complement(2815110..2815250) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238730.1 CDS STM14_3205 NC_016856.1 2815247 2815858 R hypothetical protein complement(2815247..2815858) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238731.1 CDS STM14_3206 NC_016856.1 2815861 2816061 R hypothetical protein complement(2815861..2816061) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238732.1 CDS STM14_3207 NC_016856.1 2816067 2816669 R hypothetical protein complement(2816067..2816669) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238733.1 CDS STM14_3208 NC_016856.1 2816704 2816883 R putative bacteriophage protein complement(2816704..2816883) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238734.1 CDS STM14_3209 NC_016856.1 2816906 2817040 D prophage DinI 2816906..2817040 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238735.1 CDS STM14_3210 NC_016856.1 2817069 2817302 R hypothetical protein complement(2817069..2817302) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238736.1 CDS STM14_3211 NC_016856.1 2817545 2818177 R similar to hypothetical protein Senterienterica_19312 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486]; hypothetical protein complement(2817545..2818177) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238737.1 CDS STM14_3212 NC_016856.1 2818285 2818983 R Eaa1 complement(2818285..2818983) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238738.1 CDS STM14_3213 NC_016856.1 2818997 2819692 R phage replication protein P complement(2818997..2819692) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238739.1 CDS STM14_3214 NC_016856.1 2819689 2820573 R phage replication protein O complement(2819689..2820573) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238740.1 CDS STM14_3215 NC_016856.1 2820665 2821039 R prophage cI protein complement(2820665..2821039) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238741.1 CDS STM14_3216 NC_016856.1 2820999 2821259 R similar to hypothetical protein Salentericaenterica_18455 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]; hypothetical protein complement(2820999..2821259) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238742.2 CDS STM14_3217 NC_016856.1 2821341 2821736 D putative regulator 2821341..2821736 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238743.1 CDS STM14_3218 NC_016856.1 2821795 2822634 D chromosome partitioning ATPase 2821795..2822634 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238744.2 CDS STM14_3219 NC_016856.1 2822627 2823013 D similar to hypothetical protein Salentericaenterica_18440 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]; hypothetical protein 2822627..2823013 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238745.1 CDS STM14_3220 NC_016856.1 2823013 2823675 D similar to hypothetical protein Salentericaenterica_18435 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]; hypothetical protein 2823013..2823675 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238746.1 CDS STM14_3221 NC_016856.1 2824017 2824139 D Gifsy-1 prophage protein 2824017..2824139 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238747.1 CDS STM14_3222 NC_016856.1 2824132 2824290 D hypothetical protein 2824132..2824290 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238748.1 CDS STM14_3223 NC_016856.1 2824312 2824662 D hypothetical protein 2824312..2824662 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238749.1 CDS STM14_3224 NC_016856.1 2824789 2827716 D similar to exodeoxyribonuclease VIII (gi|7467238); exodeoxyribonuclease VIII-like protein 2824789..2827716 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238750.1 CDS STM14_3225 NC_016856.1 2827727 2828836 D similar to enterohemolysin 1 in Escherichia coli; hypothetical protein AAC26069.1 (gi|7467267); enterohemolysin 1-like protein 2827727..2828836 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238751.1 CDS STM14_3226 NC_016856.1 2828879 2829118 D putative cytoplasmic protein 2828879..2829118 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238752.1 CDS STM14_3227 NC_016856.1 2829159 2829443 D similar to excisionase in phage phi-80; probable excisionase (gi|7467278); excisionase-like protein 2829159..2829443 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238753.1 CDS STM14_3228 NC_016856.1 2829421 2830650 R similar to integrase in phage (gi|7467280); integrase-like protein complement(2829421..2830650) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238754.1 CDS STM14_3229 NC_016856.1 2830868 2831005 D hypothetical protein 2830868..2831005 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238755.1 CDS STM14_3230 NC_016856.1 2831002 2831118 R hypothetical protein complement(2831002..2831118) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238756.1 CDS rseC NC_016856.1 2831148 2831627 R involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC complement(2831148..2831627) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238757.1 CDS rseB NC_016856.1 2831624 2832580 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(2831624..2832580) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238758.1 CDS rseA NC_016856.1 2832580 2833230 R similar to Escherichia coli anti sigma-E/sigma 24 factor; negative regulatory protein (AAC75625.1); anti-RNA polymerase sigma factor SigE complement(2832580..2833230) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238759.1 CDS rpoE NC_016856.1 2833262 2833837 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(2833262..2833837) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238760.1 CDS STM14_3235 NC_016856.1 2833834 2833998 R hypothetical protein complement(2833834..2833998) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238761.1 CDS STM14_3236 NC_016856.1 2833998 2834177 R hypothetical protein complement(2833998..2834177) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238762.1 CDS nadB NC_016856.1 2834262 2835884 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2834262..2835884 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238763.1 CDS yfiC NC_016856.1 2835869 2836606 R similar to Escherichia coli putative enzyme (AAC75628.1); putative transferase complement(2835869..2836606) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238764.1 CDS STM14_3239 NC_016856.1 2836525 2836725 R putative methyltransferase complement(2836525..2836725) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238765.1 CDS srmB NC_016856.1 2836737 2838071 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2836737..2838071 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238766.1 CDS yfiE NC_016856.1 2838089 2838988 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75630.1); LysR family; putative transcriptional regulator complement(2838089..2838988) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238767.1 CDS yfiK NC_016856.1 2839091 2839678 D neutral amino-acid efflux protein 2839091..2839678 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238768.1 CDS yfiD NC_016856.1 2839740 2840123 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(2839740..2840123) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238769.1 CDS ung NC_016856.1 2840442 2841131 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2840442..2841131 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238770.1 CDS yfiF NC_016856.1 2841247 2842284 R putative methyltransferase complement(2841247..2842284) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238771.1 CDS trxC NC_016856.1 2842488 2842907 D similar to Escherichia coli putative thioredoxin-like protein (AAC75635.1); redox factor; thioredoxin 2 2842488..2842907 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238772.1 CDS yfiP NC_016856.1 2842980 2843660 D putative cytoplasmic protein 2842980..2843660 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238773.1 CDS yfiQ NC_016856.1 2843714 2846374 D putative acetyl-CoA synthetase 2843714..2846374 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238774.1 CDS STM14_3249 NC_016856.1 2846371 2846505 D hypothetical protein 2846371..2846505 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238775.1 CDS pssA NC_016856.1 2846489 2847844 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2846489..2847844 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238776.1 CDS yfiM NC_016856.1 2847889 2848212 D hypothetical protein 2847889..2848212 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238777.1 CDS kgtP NC_016856.1 2848209 2849510 R similar to Escherichia coli alpha-ketoglutarate permease (AAC75640.1); MFS family; alpha-ketoglutarate transporter complement(2848209..2849510) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238778.1 CDS STM14_3253 NC_016856.1 2849614 2850069 R putative cytoplasmic protein complement(2849614..2850069) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238780.1 CDS STM14_3259 NC_016856.1 2855709 2855837 D hypothetical protein 2855709..2855837 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238781.1 CDS STM14_3260 NC_016856.1 2855915 2856031 D hypothetical protein 2855915..2856031 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238782.1 CDS clpB NC_016856.1 2856033 2858606 R similar to Escherichia coli heat shock protein (AAC75641.1); Hsp 100; part of novel multi-chaperone system with DnaK, DnaJ, and GrpE; protein disaggregation chaperone complement(2856033..2858606) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238783.1 CDS yfiH NC_016856.1 2858736 2859467 R hypothetical protein complement(2858736..2859467) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238784.1 CDS rluD NC_016856.1 2859464 2860444 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D complement(2859464..2860444) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238785.1 CDS yfiO NC_016856.1 2860576 2861313 D with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 2860576..2861313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238786.1 CDS yfiA NC_016856.1 2861585 2861923 D associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2861585..2861923 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238787.1 CDS STM14_3267 NC_016856.1 2861933 2862097 D hypothetical protein 2861933..2862097 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238788.1 CDS pheA NC_016856.1 2862174 2863334 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2862174..2863334 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238789.1 CDS STM14_3269 NC_016856.1 2863295 2864203 R putative cytoplasmic protein complement(2863295..2864203) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238790.1 CDS tyrA NC_016856.1 2864261 2865382 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(2864261..2865382) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238791.1 CDS aroF NC_016856.1 2865392 2866462 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2865392..2866462) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238792.1 CDS STM14_3272 NC_016856.1 2866577 2866735 D hypothetical protein 2866577..2866735 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238793.1 CDS STM14_3273 NC_016856.1 2866637 2866750 R hypothetical protein complement(2866637..2866750) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238794.1 CDS yfiR NC_016856.1 2866902 2867420 D hypothetical protein 2866902..2867420 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238795.1 CDS yfiN NC_016856.1 2867413 2868633 D hypothetical protein 2867413..2868633 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238796.1 CDS rplS NC_016856.1 2868790 2869137 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2868790..2869137) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238797.1 CDS trmD NC_016856.1 2869178 2869945 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2869178..2869945) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238798.1 CDS rimM NC_016856.1 2869990 2870538 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein complement(2869990..2870538) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238799.1 CDS rpsP NC_016856.1 2870557 2870805 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2870557..2870805) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238800.1 CDS STM14_3280 NC_016856.1 2870862 2871008 R hypothetical protein complement(2870862..2871008) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238801.1 CDS ffh NC_016856.1 2871119 2872480 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(2871119..2872480) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238802.1 CDS STM14_3282 NC_016856.1 2872506 2872700 D putative cytochrome c-type biogenesis protein (heme exporter) 2872506..2872700 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238803.1 CDS corE NC_016856.1 2872646 2873437 D CorE (gi|4877800); putative cytochrome c-type biogenesis protein; heme exporter protein C; hypothetical protein 2872646..2873437 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238804.1 CDS yfjD NC_016856.1 2873547 2874743 D similar to Escherichia coli putative transport protein (AAC75662.1); hypothetical protein 2873547..2874743 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238805.1 CDS STM14_3285 NC_016856.1 2874864 2875469 D putative cytoplasmic protein 2874864..2875469 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238806.1 CDS grpE NC_016856.1 2875504 2876094 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2875504..2876094) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238807.1 CDS ppnK NC_016856.1 2876217 2877095 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2876217..2877095 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238808.1 CDS recN NC_016856.1 2877181 2878842 D similar to Escherichia coli protein used in recombination and DNA repair (AAC75665.1); recombination and repair protein 2877181..2878842 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238809.1 CDS smpA NC_016856.1 2878991 2879329 D similar to Escherichia coli small membrane protein A (AAC75666.1); hypothetical protein 2878991..2879329 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238810.1 CDS STM14_3291 NC_016856.1 2879362 2879469 R hypothetical protein complement(2879362..2879469) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238811.1 CDS yfjF NC_016856.1 2879495 2879785 R hypothetical protein complement(2879495..2879785) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238812.1 CDS yfjG NC_016856.1 2879775 2880251 R lipid transport protein; hypothetical protein complement(2879775..2880251) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238813.1 CDS smpB NC_016856.1 2880401 2880883 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2880401..2880883 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238814.1 CDS STM14_3295 NC_016856.1 2881056 2881160 D hypothetical protein 2881056..2881160 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238815.1 CDS STM14_3296 NC_016856.1 2881388 2881540 R hypothetical protein complement(2881388..2881540) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238816.1 CDS STM14_3298 NC_016856.1 2893036 2894445 D similar to Escherichia coli putative resistance protein (AAC73673.1); putative outer membrane efflux protein 2893036..2894445 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238817.1 CDS STM14_3299 NC_016856.1 2894442 2896622 D similar to Escherichia coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); putative ABC transporter transmembrane region 2894442..2896622 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238818.1 CDS STM14_3300 NC_016856.1 2896630 2897793 D HlyD family secretion protein 2896630..2897793 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238819.1 CDS STM14_3301 NC_016856.1 2898012 2898236 R hypothetical protein complement(2898012..2898236) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238822.1 CDS STM14_3304 NC_016856.1 2899686 2900279 D hypothetical protein 2899686..2900279 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238823.1 CDS STM14_3305 NC_016856.1 2900669 2901862 D putative cytoplasmic protein 2900669..2901862 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238824.1 CDS STM14_3306 NC_016856.1 2902197 2903024 R putative cytoplasmic protein complement(2902197..2903024) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238825.1 CDS STM14_3307 NC_016856.1 2903475 2903690 D putative cytoplasmic protein 2903475..2903690 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238826.1 CDS STM14_3308 NC_016856.1 2903726 2905795 D putative inner membrane protein 2903726..2905795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238827.1 CDS STM14_3309 NC_016856.1 2905915 2906040 D hypothetical protein 2905915..2906040 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238828.1 CDS STM14_3310 NC_016856.1 2906298 2907581 D excinuclease; putative ATPase 2906298..2907581 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238829.1 CDS STM14_3311 NC_016856.1 2907626 2908444 D putative cytoplasmic protein 2907626..2908444 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238830.1 CDS STM14_3312 NC_016856.1 2908421 2908582 R hypothetical protein complement(2908421..2908582) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238831.1 CDS STM14_3313 NC_016856.1 2908598 2908954 R putative transcriptional regulator complement(2908598..2908954) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238832.1 CDS STM14_3314 NC_016856.1 2909049 2909333 D similar to Escherichia coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); putative cytoplasmic protein 2909049..2909333 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238833.1 CDS STM14_3315 NC_016856.1 2909446 2909967 D similar to Escherichia coli PTS system glucitol/sorbitol-specific IIC component; one of two (AAC75744.1); putative PTS system glucitol/sorbitol-specific enzyme II 2909446..2909967 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238834.1 CDS STM14_3316 NC_016856.1 2909964 2910338 D similar to Escherichia coli PTS system glucitol/sorbitol-specific enzyme IIA component (AAC75746.1); putative glucitol-specific PTS enzyme III 2909964..2910338 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238835.1 CDS STM14_3317 NC_016856.1 2910335 2911315 D similar to Escherichia coli PTS system glucitol/sorbitol-specific IIB component and second of two IIC components (AAC75745.1); putative glucitol-specific PTS enzyme III 2910335..2911315 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238836.1 CDS STM14_3318 NC_016856.1 2911326 2912339 D similar to Escherichia coli putative dehydrogenase (AAC74397.1); putative dehydrogenase 2911326..2912339 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238837.1 CDS STM14_3319 NC_016856.1 2912634 2913836 D putative hexulose 6 phosphate synthase 2912634..2913836 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238838.1 CDS STM14_3320 NC_016856.1 2913910 2914545 R similar to Escherichia coli probable hexulose-6-phosphate synthase (AAC77153.1); putative hexulose 6 phosphate synthase complement(2913910..2914545) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238839.1 CDS STM14_3321 NC_016856.1 2914569 2915132 R putative sugar phosphate aminotransferase complement(2914569..2915132) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238840.1 CDS STM14_3322 NC_016856.1 2915132 2915974 R putative cytoplasmic protein complement(2915132..2915974) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238841.1 CDS STM14_3324 NC_016856.1 2917712 2917867 R hypothetical protein complement(2917712..2917867) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238842.1 CDS STM14_3325 NC_016856.1 2917868 2919547 D similar to Escherichia coli putative transport protein (AAC73180.1); putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 2917868..2919547 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238843.1 CDS STM14_3326 NC_016856.1 2919626 2919739 R hypothetical protein complement(2919626..2919739) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238844.1 CDS STM14_3327 NC_016856.1 2920664 2921539 D putative integrase 2920664..2921539 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238845.1 CDS STM14_3328 NC_016856.1 2921705 2923579 D putative inner membrane protein 2921705..2923579 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238846.1 CDS STM14_3329 NC_016856.1 2923839 2925122 R putative inner membrane protein complement(2923839..2925122) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894094.1 CDS STM14_06470 NC_016856.1 2925700 2926296 D P4-type integrase 2925700..2926296 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238847.1 CDS STM14_3331 NC_016856.1 2926750 2927154 R putative transposase complement(2926750..2927154) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238848.1 CDS STM14_3332 NC_016856.1 2927301 2927567 R putative transposase complement(2927301..2927567) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238849.1 CDS STM14_3333 NC_016856.1 2928020 2928658 R putative cytoplasmic protein complement(2928020..2928658) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238850.1 CDS STM14_3334 NC_016856.1 2928655 2930637 R superfamily I; putative DNA/RNA helicase complement(2928655..2930637) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238851.1 CDS STM14_3335 NC_016856.1 2930916 2931215 D putative transposase 2930916..2931215 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238852.1 CDS STM14_3336 NC_016856.1 2931212 2932078 D similar to Escherichia coli IS3 putative transposase (AAC75150.1); putative transposase 2931212..2932078 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238853.1 CDS fljA NC_016856.1 2932858 2933397 R repressor of fliC (SW:FLJA_SALTY); flagellar synthesis; phase-1 flagellin repressor complement(2932858..2933397) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238854.1 CDS fljB NC_016856.1 2933465 2934985 R structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin complement(2933465..2934985) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238855.1 CDS hin NC_016856.1 2935077 2935649 D DNA-invertase hin (SW:HIN_SALTY); regulation of flagellar gene expression by site-specific H inversion of DNA; DNA-invertase Hin 2935077..2935649 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238856.1 CDS STM14_3340 NC_016856.1 2935806 2935976 D hypothetical protein 2935806..2935976 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238857.1 CDS STM14_3341 NC_016856.1 2936002 2936229 R hypothetical protein complement(2936002..2936229) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238858.1 CDS STM14_3342 NC_016856.1 2936297 2936449 R hypothetical protein complement(2936297..2936449) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238859.1 CDS STM14_3343 NC_016856.1 2936325 2936507 D hypothetical protein 2936325..2936507 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238860.1 CDS iroB NC_016856.1 2936612 2937727 D related to UDP-glucuronosyltransferase; putative glycosyl transferase 2936612..2937727 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238861.1 CDS iroC NC_016856.1 2937808 2941461 D similar to Escherichia coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); putative ABC transporter protein 2937808..2941461 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238862.1 CDS iroD NC_016856.1 2941571 2942815 D similar to Escherichia coli enterochelin esterase (AAC73686.1); Fes; enterochelin esterase=-like protein 2941571..2942815 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238863.1 CDS iroE NC_016856.1 2942847 2943782 D alpha/beta superfamily; putative hydrolase 2942847..2943782 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238864.1 CDS iroN NC_016856.1 2943824 2946004 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(2943824..2946004) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238865.1 CDS pipB2 NC_016856.1 2947037 2948089 R PipB2; similar to STM1088; contains pentapeptide repeats; secreted by SPI-2 type III secretion; localizes to Salmonella-containing vacuole and host cell membranes; secreted effector protein complement(2947037..2948089) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238866.1 CDS STM14_3351 NC_016856.1 2948161 2948499 D hypothetical protein 2948161..2948499 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238867.1 CDS virK NC_016856.1 2948608 2949537 D similar to Escherichia coli putative enzyme (AAC73964.1); similar to virK in Shigella; virulence protein 2948608..2949537 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238868.1 CDS STM14_3353 NC_016856.1 2949636 2949833 D hypothetical protein 2949636..2949833 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238869.1 CDS mig-14 NC_016856.1 2949830 2950726 D putative transcriptional activator 2949830..2950726 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238870.1 CDS STM14_3355 NC_016856.1 2950805 2950957 R hypothetical protein complement(2950805..2950957) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238871.1 CDS STM14_3356 NC_016856.1 2951059 2951226 D hypothetical protein 2951059..2951226 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238872.1 CDS STM14_3357 NC_016856.1 2951242 2951355 D hypothetical protein 2951242..2951355 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238873.1 CDS nixA NC_016856.1 2951448 2952461 R putative nickel transporter complement(2951448..2952461) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238874.1 CDS tctE NC_016856.1 2952594 2954009 R similar to Escherichia coli putative 2-component sensor protein (AAC76062.1); tricarboxylic transport; regulatory protein complement(2952594..2954009) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238875.1 CDS tctD NC_016856.1 2953996 2954670 R transcriptional regulatory protein TctD (SW:TCTD_SALTY); tricarboxylic transport; regulatory protein complement(2953996..2954670) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238876.1 CDS STM14_3361 NC_016856.1 2954825 2955802 D tricarboxylic transport 2954825..2955802 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238877.1 CDS STM14_3362 NC_016856.1 2955814 2956248 D tricarboxylic transport 2955814..2956248 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238878.1 CDS STM14_3363 NC_016856.1 2956259 2957773 D tricarboxylic transport 2956259..2957773 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238879.1 CDS STM14_3364 NC_016856.1 2957937 2958050 D hypothetical protein 2957937..2958050 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238880.1 CDS STM14_3365 NC_016856.1 2958076 2959053 D in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 2958076..2959053 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238881.1 CDS ygaF NC_016856.1 2959079 2960347 D hypothetical protein 2959079..2960347 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238882.1 CDS gabD NC_016856.1 2960369 2961817 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2960369..2961817 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238883.1 CDS gabT NC_016856.1 2961832 2963115 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2961832..2963115 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238884.1 CDS gabP NC_016856.1 2963245 2964645 D similar to Escherichia coli transport permease protein of gamma-aminobutyrate (AAC75710.1); APC family; RpoS dependent; gamma-aminobutyrate transporter 2963245..2964645 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238885.1 CDS ygaE NC_016856.1 2964687 2965364 D regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2964687..2965364 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238886.1 CDS ygaU NC_016856.1 2965386 2965835 R putative LysM domain; hypothetical protein complement(2965386..2965835) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238887.1 CDS STM14_3372 NC_016856.1 2965822 2965938 D hypothetical protein 2965822..2965938 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238888.1 CDS yqaE NC_016856.1 2965935 2966093 R YqaE family; putative transport protein complement(2965935..2966093) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238889.1 CDS STM14_3374 NC_016856.1 2966276 2966575 D ArsR family; putative regulatory protein 2966276..2966575 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238890.1 CDS ygaP NC_016856.1 2966585 2967112 D putative rhodanese-like sulfurtransferase 2966585..2967112 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238891.1 CDS STM14_3376 NC_016856.1 2967191 2967370 D hypothetical protein 2967191..2967370 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238892.1 CDS stpA NC_016856.1 2967460 2967861 R DNA-binding protein STPA (SW:STPA_SALTY); has chaperone activity; DNA binding protein complement(2967460..2967861) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238893.1 CDS STM14_3378 NC_016856.1 2968220 2968345 D hypothetical protein 2968220..2968345 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238894.1 CDS STM14_3379 NC_016856.1 2968355 2968534 D hypothetical protein 2968355..2968534 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238895.1 CDS STM14_3380 NC_016856.1 2968560 2969009 D putative inner membrane protein 2968560..2969009 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238896.1 CDS ygaC NC_016856.1 2969044 2969394 R hypothetical protein complement(2969044..2969394) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238897.1 CDS STM14_3382 NC_016856.1 2969378 2969494 R hypothetical protein complement(2969378..2969494) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238898.1 CDS ygaM NC_016856.1 2969544 2969882 D hypothetical protein 2969544..2969882 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238899.1 CDS STM14_3384 NC_016856.1 2969966 2971300 R similar to Escherichia coli putative regulator (AAC77296.1); GntR family; putative regulatory protein complement(2969966..2971300) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238900.1 CDS STM14_3385 NC_016856.1 2971389 2971820 D putative cytoplasmic protein 2971389..2971820 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238901.1 CDS STM14_3386 NC_016856.1 2971817 2971993 D hypothetical protein 2971817..2971993 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238902.1 CDS nrdH NC_016856.1 2972092 2972337 D glutaredoxin-like protein NrdH (SW:NRDH_SALTY); hydrogen donor; glutaredoxin-like protein 2972092..2972337 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238903.1 CDS nrdI NC_016856.1 2972334 2972744 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2972334..2972744 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238904.1 CDS nrdE NC_016856.1 2972717 2974861 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2972717..2974861 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238905.1 CDS nrdF NC_016856.1 2974872 2975831 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2974872..2975831 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238906.1 CDS proV NC_016856.1 2976186 2977388 D with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2976186..2977388 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238907.1 CDS proW NC_016856.1 2977381 2978445 D with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2977381..2978445 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238908.1 CDS proX NC_016856.1 2978515 2979510 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2978515..2979510 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238909.1 CDS STM14_3394 NC_016856.1 2979522 2979632 D hypothetical protein 2979522..2979632 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238910.1 CDS STM14_3395 NC_016856.1 2979675 2980859 D similar to Escherichia coli putative transport protein (AAC75728.1); putative inner membrane protein 2979675..2980859 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238911.1 CDS STM14_3396 NC_016856.1 2981060 2981167 R hypothetical protein complement(2981060..2981167) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238912.1 CDS emrR NC_016856.1 2981356 2981886 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2981356..2981886 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238913.1 CDS STM14_3398 NC_016856.1 2981900 2982022 R hypothetical protein complement(2981900..2982022) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238914.1 CDS emrA NC_016856.1 2982013 2983185 D similar to Escherichia coli multidrug resistance secretion protein (AAC75732.1); multidrug resistance secretion protein 2982013..2983185 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238915.1 CDS emrB NC_016856.1 2983202 2984740 D similar to Escherichia coli multidrug resistance; probably membrane translocase (AAC75733.1); MFS family; putative multidrug transport protein 2983202..2984740 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238916.1 CDS STM14_3401 NC_016856.1 2984789 2986159 R putative glycoporin complement(2984789..2986159) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238917.1 CDS luxS NC_016856.1 2986505 2987020 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(2986505..2987020) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238918.1 CDS gshA NC_016856.1 2987170 2988726 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(2987170..2988726) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238919.1 CDS yqaA NC_016856.1 2988803 2989228 R putative inner membrane protein complement(2988803..2989228) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238920.1 CDS yqaB NC_016856.1 2989225 2989791 R YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase complement(2989225..2989791) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238921.1 CDS STM14_3411 NC_016856.1 2991063 2991173 D hypothetical protein 2991063..2991173 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238922.1 CDS csrA NC_016856.1 2991186 2991371 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(2991186..2991371) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238923.1 CDS alaS NC_016856.1 2991606 2994236 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2991606..2994236) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238924.1 CDS STM14_3414 NC_016856.1 2994186 2994350 D hypothetical protein 2994186..2994350 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238925.1 CDS STM14_3415 NC_016856.1 2994269 2994475 R hypothetical protein complement(2994269..2994475) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238926.1 CDS recX NC_016856.1 2994472 2994972 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2994472..2994972) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238927.1 CDS recA NC_016856.1 2995089 2996150 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2995089..2996150) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238928.1 CDS ygaD NC_016856.1 2996235 2996732 R competence damage-inducible protein A complement(2996235..2996732) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238929.1 CDS STM14_3419 NC_016856.1 2996927 2997172 D hypothetical protein 2996927..2997172 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238930.1 CDS mltB NC_016856.1 2997210 2998289 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B complement(2997210..2998289) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238931.1 CDS STM14_3421 NC_016856.1 2998326 2998466 D hypothetical protein 2998326..2998466 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238932.1 CDS srlA NC_016856.1 2998543 2999106 D similar to Escherichia coli PTS system; one of two glucitol/sorbitol-specific components (AAC75744.1); PTS family; glucitol/sorbitol-specific enzyme IIC component 2998543..2999106 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238933.1 CDS srlE NC_016856.1 2999103 3000074 D similar to Escherichia coli PTS system; one of two glucitol/sorbitol-specific components (AAC75745.1); PTS family; PTS system glucitol/sorbitol-specific transporter subunit IIB 2999103..3000074 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238934.1 CDS slrB NC_016856.1 3000086 3000448 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; glucitol/sorbitol-specific PTS system component IIA 3000086..3000448 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238935.1 CDS srlD NC_016856.1 3000460 3001239 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 3000460..3001239 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238936.1 CDS gutM NC_016856.1 3001315 3001674 D regulator for glucitol utilization; DNA-binding transcriptional activator GutM 3001315..3001674 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238937.1 CDS STM14_3427 NC_016856.1 3001727 3001867 R hypothetical protein complement(3001727..3001867) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238938.1 CDS srlR NC_016856.1 3001872 3002645 D regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 3001872..3002645 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238939.1 CDS gutQ NC_016856.1 3002638 3003603 D catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 3002638..3003603 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238940.1 CDS ygaA NC_016856.1 3003600 3005120 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(3003600..3005120) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238941.1 CDS STM14_3431 NC_016856.1 3005306 3006745 D detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 3005306..3006745 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238942.1 CDS ygbD NC_016856.1 3006742 3007875 D catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 3006742..3007875 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238943.1 CDS STM14_3433 NC_016856.1 3007751 3007963 R hydrogenase maturation protein complement(3007751..3007963) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238944.1 CDS hypF NC_016856.1 3007972 3010212 R similar to Escherichia coli transcriptional regulatory protein (AAC75754.1); hydrogenase maturation protein complement(3007972..3010212) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238945.1 CDS STM14_3435 NC_016856.1 3010214 3010348 R hypothetical protein complement(3010214..3010348) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238946.1 CDS hydN NC_016856.1 3010358 3010903 R involved in electron transport from formate to hydrogen; electron transport protein HydN complement(3010358..3010903) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238947.1 CDS STM14_3437 NC_016856.1 3010872 3011006 R hypothetical protein complement(3010872..3011006) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238948.1 CDS STM14_3438 NC_016856.1 3011104 3011913 R putative periplasmic protein; hypothetical protein complement(3011104..3011913) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238949.1 CDS hycI NC_016856.1 3011940 3012410 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease complement(3011940..3012410) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238950.1 CDS hycH NC_016856.1 3012403 3012813 R similar to Escherichia coli processing of large subunit HycE of hydrogenase 3; part of the FHL complex (AAC75760.1); hydrogenase 3 large subunit processing protein complement(3012403..3012813) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238951.1 CDS hycG NC_016856.1 3012810 3013577 R similar to Escherichia coli hydrogenase (AAC75761.1); hydrogenase complement(3012810..3013577) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238952.1 CDS hycF NC_016856.1 3013577 3014119 R electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit complement(3013577..3014119) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238953.1 CDS hycE NC_016856.1 3014129 3015838 R similar to Escherichia coli large subunit of hydrogenase 3; part of FHL complex (AAC75763.1); hydrogenase 3 large subunit complement(3014129..3015838) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238954.1 CDS hycD NC_016856.1 3015856 3016779 R similar to Escherichia coli membrane-spanning protein of hydrogenase 3; part of FHL complex (AAC75764.1); hydrogenase 3 membrane subunit complement(3015856..3016779) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238955.1 CDS hycC NC_016856.1 3016782 3018608 R catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); formate hydrogenlyase subunit 3 complement(3016782..3018608) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238956.1 CDS hycB NC_016856.1 3018608 3019216 R similar to Escherichia coli probable small subunit of hydrogenase-3; iron-sulfur protein; part of FHL complex (AAC75766.1); hydrogenase-3 iron-sulfur subunit complement(3018608..3019216) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238957.1 CDS STM14_3447 NC_016856.1 3019238 3019342 R hypothetical protein complement(3019238..3019342) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238958.1 CDS hycA NC_016856.1 3019362 3019823 R regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA complement(3019362..3019823) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238959.1 CDS STM14_3449 NC_016856.1 3019869 3020072 D hypothetical protein 3019869..3020072 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238960.1 CDS hypA_1 NC_016856.1 3020033 3020389 D plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 3020033..3020389 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238961.1 CDS hypB NC_016856.1 3020458 3021330 D GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 3020458..3021330 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238962.1 CDS hypC NC_016856.1 3021321 3021593 D HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase isoenzymes formation protein 3021321..3021593 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238963.1 CDS hypD NC_016856.1 3021593 3022714 D similar to Escherichia coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75771.1); putative hydrogenase formation protein 3021593..3022714 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238964.1 CDS hypE NC_016856.1 3022711 3023721 D similar to Escherichia coli protein which plays a structural role in maturation of all 3 hydrogenases (AAC75772.1); putative hydrogenase formation protein 3022711..3023721 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238965.2 CDS fhlA NC_016856.1 3023955 3026018 D formate hydrogenlyase transcriptional activator for fdhF, hyc and hyp operons EBP family (SW:FHLA_SALTY); formate hydrogen-lyase transcriptional activator 3023955..3026018 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238966.1 CDS ygbA NC_016856.1 3026080 3026424 R hypothetical protein complement(3026080..3026424) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238967.1 CDS STM14_3457 NC_016856.1 3026426 3026551 D hypothetical protein 3026426..3026551 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238968.1 CDS sitA NC_016856.1 3026606 3027523 D SitA (gi|5231094); Salmonella iron transporter; Fur-regulated; putative periplasmic binding protein 3026606..3027523 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238969.1 CDS sitB NC_016856.1 3027520 3028341 D SitB (gi|5231095); Salmonella iron transporter; Fur-regulated; putative ATP-binding protein 3027520..3028341 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238970.1 CDS sitC NC_016856.1 3028338 3029198 D SitC (gi|5231096); Salmonella iron transporter; Fur-regulated; putative permease 3028338..3029198 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238971.1 CDS sitD NC_016856.1 3029189 3030037 D SitD (gi|5231097); Salmonella iron transporter; Fur-regulated; putative permease 3029189..3030037 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238973.1 CDS sprB NC_016856.1 3031204 3031959 R transcriptional regulator SprB (gi|5007028); transcriptional regulator complement(3031204..3031959) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238974.1 CDS STM14_3464 NC_016856.1 3032212 3032319 D hypothetical protein 3032212..3032319 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238975.1 CDS hilC NC_016856.1 3032344 3033231 R SprA; HilC (gi|4455106); helix-turn-helix protein; AraC family; activator for invasion genes; derepresses hilA expression; invasion regulatory protein complement(3032344..3033231) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238976.1 CDS STM14_3466 NC_016856.1 3033296 3033403 R hypothetical protein complement(3033296..3033403) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238977.1 CDS orgC NC_016856.1 3033576 3034028 R putative cytoplasmic protein complement(3033576..3034028) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238978.1 CDS orgB NC_016856.1 3034025 3034705 R oxygen-regulated invasion protein OrgB (SW:ORGB_SALTY); putative flagellar biosynthesis/type III secretion apparatus; needle complex export protein complement(3034025..3034705) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238979.1 CDS orgA NC_016856.1 3034662 3035261 R oxygen-regulated invasion protein OrgA (SW:ORGA_SALTY); putative flagellar biosynthesis/type III secretion apparatus; needle complex assembly protein complement(3034662..3035261) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238980.1 CDS prgK NC_016856.1 3035233 3035991 R PrgK protein precursor (SW:PRGK_SALTY); cell invasion protein; interacts with PrgH and forms oligomeric rings; type III secretion apparatus; needle complex inner membrane lipoprotein complement(3035233..3035991) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238981.1 CDS prgJ NC_016856.1 3035988 3036293 R PrgJ protein (SW:PRGJ_SALTY); invasion protein; may cap needle complex; type III secretion apparatus; needle complex minor subunit complement(3035988..3036293) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238982.1 CDS prgI NC_016856.1 3036312 3036554 R PrgI protein (SW:PRGI_SALTY); invasion protein; type III secretion apparatus; needle complex major subunit complement(3036312..3036554) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238983.1 CDS prgH NC_016856.1 3036579 3037757 R PrgH protein (SW:PRGH_SALTY); invasion protein; interacts with PrgK; tetarmerizes; with PrgK forms multimeric ring-shaped structures; type III secretion apparatus; needle complex inner membrane protein complement(3036579..3037757) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238984.1 CDS hilD NC_016856.1 3038073 3039002 D HilD (gi|4455108); helix-turn-helix proteins; AraC family; activator for invasion genes; derepresses hilA expression; invasion protein regulatory protein 3038073..3039002 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238985.1 CDS hilA NC_016856.1 3040093 3041754 D Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 3040093..3041754 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238986.1 CDS iagB NC_016856.1 3041772 3042254 D invasion associated gene protein IagB precursor (SW:IAGB_SALTY); invasion protein precursor 3041772..3042254 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238987.1 CDS sptP NC_016856.1 3042308 3043939 R protein tyrosine phosphatase SptP (gi|1519054); translocated protein; type III secretion; antagonizes bacterial-encoded exchange factors SopE and SopE2 by interfering with stimulation of Cdc42 and Rac1; binds Rac1; protein tyrosine phosphatase/GTPase activating protein complement(3042308..3043939) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238988.1 CDS sicP NC_016856.1 3043926 3044318 R SicP (gi|3283218); virulence protein; chaperone for SptP; type III secretion; secretion chaperone complement(3043926..3044318) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238989.1 CDS STM14_3479 NC_016856.1 3044345 3044605 R putative cytoplasmic protein complement(3044345..3044605) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238990.1 CDS iacP NC_016856.1 3044649 3044897 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3044649..3044897) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238991.1 CDS sipA NC_016856.1 3044916 3046973 R Salmonella invasion protein SipA (gi|1172128); binds actin and promotes polymerization; results in membrane ruffling and internalization due to cytoskeleton rearrangements; secreted effector protein complement(3044916..3046973) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238992.1 CDS sipD NC_016856.1 3046992 3048023 R cell invasion protein SspD protein (gi|7443300); involved in translocating secreted proteins to host cells; translocon; type III secretion; translocation machinery component complement(3046992..3048023) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238993.1 CDS sipC NC_016856.1 3048094 3049323 R cell invasion protein SspC (gi|7443298); involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipC; translocation machinery component complement(3048094..3049323) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238994.1 CDS sipB NC_016856.1 3049351 3051132 R cell invasion protein SspB (gi|975295); involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipB; translocation machinery component complement(3049351..3051132) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238995.1 CDS sicA NC_016856.1 3051135 3051632 R surface presentation of antigens protein SpaT (SW:SPAT_SALTY); surface presentation of antigens; secretory proteins; partitioning factor for SipB/C; prevents premature association of SipB/C; regulates several promoters with InvF; secretion chaperone complement(3051135..3051632) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238996.1 CDS spaS NC_016856.1 3051770 3052840 R Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS complement(3051770..3052840) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238997.1 CDS spaR NC_016856.1 3052827 3053618 R surface presentation of antigens protein SpaR (SW:SPAR_SALTY); inner membrane secretory protein; type III secretion apparatus; needle complex export protein complement(3052827..3053618) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238998.1 CDS spaQ NC_016856.1 3053622 3053882 R surface presentation of antigens protein SpaQ (SW:SPAQ_SALTY); inner membrane secretory protein; type III secretion apparatus; needle complex export protein complement(3053622..3053882) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005238999.1 CDS spaP NC_016856.1 3053908 3054582 R part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP complement(3053908..3054582) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239000.1 CDS spaO NC_016856.1 3054572 3055483 R involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO complement(3054572..3055483) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239001.1 CDS invJ NC_016856.1 3055483 3056493 R surface presentation of antigens protein SpaN (SW:SPAN_SALTY); surface presentation of antigens; secretory proteins; needle length control protein complement(3055483..3056493) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239002.1 CDS invI NC_016856.1 3056493 3056936 R surface presentation of antigens protein SpaM (SW:SPAM_SALTY); secretory proteins; type III secretion apparatus; needle complex assembly protein complement(3056493..3056936) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239003.1 CDS invC NC_016856.1 3056914 3058209 R Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL complement(3056914..3058209) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239004.1 CDS invB NC_016856.1 3058206 3058613 R surface presentation of antigens protein SpaK (SW:SPAK_SALTY); secretory protein; chaperone for SopE/SopE2; type III secretion; secretion chaperone complement(3058206..3058613) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239005.1 CDS invA NC_016856.1 3058637 3060694 R invasion protein InvA (SW:INVA_SALTY); inner membrane protein; type III secretion apparatus; needle complex export protein complement(3058637..3060694) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239006.1 CDS invE NC_016856.1 3060719 3061837 R invasion protein InvE (SW:INVE_SALTY); interacts with SecA-SipB/C complex; essential for translocation into host cells; invasion protein complement(3060719..3061837) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239007.1 CDS invG NC_016856.1 3061834 3063522 R InvG protein precursor (SW:INVG_SALTY); forms ring-shaped structure in outer membrane; requires InvH for stability; type III secretion apparatus; outer membrane secretin precursor complement(3061834..3063522) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239008.1 CDS invF NC_016856.1 3063519 3064268 R invasion protein InvF (SW:INVF_SALTY); SPI-1 transcription factor; activated by HilA; requires SicA as a co-factor; controls sigD/sopB, sopE and sicAsipBCDA genes; invasion regulatory protein complement(3063519..3064268) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239009.1 CDS invH NC_016856.1 3064626 3065069 D invasion protein InvH precursor (SW:INVH_SALTY); stabilizes InvG secretin; type III secretion apparatus; needle complex outer membrane lipoprotein precursor 3064626..3065069 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239010.1 CDS STM14_3500 NC_016856.1 3065500 3065949 D putative cytoplasmic protein 3065500..3065949 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239011.1 CDS STM14_3501 NC_016856.1 3065934 3066281 D similar to STM2011 and STM2508; putative cytoplasmic protein 3065934..3066281 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239012.1 CDS STM14_3502 NC_016856.1 3066393 3066497 R hypothetical protein complement(3066393..3066497) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239013.1 CDS STM14_3503 NC_016856.1 3066554 3066880 R putative cytoplasmic protein complement(3066554..3066880) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239014.1 CDS STM14_3504 NC_016856.1 3067340 3067483 R hypothetical protein complement(3067340..3067483) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239015.1 CDS STM14_3505 NC_016856.1 3067569 3067859 D putative ABC-type transporter 3067569..3067859 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239016.1 CDS STM14_3506 NC_016856.1 3067856 3068383 D putative acetyltransferase 3067856..3068383 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894095.1 CDS STM14_3507 NC_016856.1 3068456 3068632 R hypothetical protein complement(3068456..3068632) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239017.1 CDS STM14_3508 NC_016856.1 3068687 3068806 D hypothetical protein 3068687..3068806 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239018.1 CDS pphB NC_016856.1 3069008 3069664 D similar to Escherichia coli protein phosphatase 2 (AAC75776.1); serine/threonine-specific protein phosphatase 2 3069008..3069664 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239019.1 CDS STM14_3510 NC_016856.1 3069836 3070357 R putative cytoplasmic protein complement(3069836..3070357) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239020.1 CDS mutS NC_016856.1 3070516 3073083 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein 3070516..3073083 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239021.1 CDS STM14_3512 NC_016856.1 3073139 3073519 R putative cytoplasmic protein complement(3073139..3073519) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239022.1 CDS STM14_3513 NC_016856.1 3073516 3074724 R similar to Escherichia coli multidrug resistance; probably membrane translocase (AAC75733.1); putative permease complement(3073516..3074724) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239023.1 CDS STM14_3514 NC_016856.1 3074812 3075744 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator 3074812..3075744 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239024.1 CDS STM14_3515 NC_016856.1 3075786 3077282 R similar to Escherichia coli putative transport protein (AAC75782.1); putative permease complement(3075786..3077282) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239025.1 CDS STM14_3516 NC_016856.1 3077279 3078229 R similar to Escherichia coli UDP-galactose-4-epimerase (AAC73846.1); putative nucleoside-diphosphate-sugar epimerase complement(3077279..3078229) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239026.1 CDS ygbM NC_016856.1 3078269 3079045 R hypothetical protein complement(3078269..3079045) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239027.1 CDS ygbL NC_016856.1 3079050 3079688 R similar to Escherichia coli putative epimerase/aldolase (AAC75780.1); putative aldolase complement(3079050..3079688) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239028.1 CDS ygbK NC_016856.1 3079685 3080947 R putative tRNA synthase complement(3079685..3080947) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239029.1 CDS ygbJ NC_016856.1 3080941 3081864 R similar to Escherichia coli putative dehydrogenase (AAC75778.1); 3-hydroxyisobutyrate dehydrogenase complement(3080941..3081864) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239030.1 CDS ygbI NC_016856.1 3082061 3082825 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC75777.1); DeoR family; putative regulatory protein 3082061..3082825 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239031.1 CDS STM14_3522 NC_016856.1 3082844 3083248 R similar to Escherichia coli transcriptional regulator for cryptic hemolysin (AAC74714.1); putative transcriptional regulator complement(3082844..3083248) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239032.1 CDS STM14_3523 NC_016856.1 3083419 3084012 D similar to Escherichia coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (AAC75371.1); putative flavoprotein 3083419..3084012 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239033.1 CDS STM14_3524 NC_016856.1 3084012 3085439 D similar to Escherichia coli putative oxidoreductase (AAC76846.1); putative 3-polyprenyl-4-hydroxybenzoate decarboxylase 3084012..3085439 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239034.1 CDS STM14_3525 NC_016856.1 3085450 3085686 D putative cytoplasmic protein 3085450..3085686 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239035.1 CDS rpoS NC_016856.1 3085731 3086723 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(3085731..3086723) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239036.1 CDS nlpD NC_016856.1 3086786 3087919 R outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD complement(3086786..3087919) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239037.1 CDS STM14_3528 NC_016856.1 3087981 3088118 D hypothetical protein 3087981..3088118 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239038.1 CDS pcm NC_016856.1 3088095 3088721 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(3088095..3088721) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239039.1 CDS surE NC_016856.1 3088715 3089476 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3088715..3089476) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239040.1 CDS truD NC_016856.1 3089457 3090506 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(3089457..3090506) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239041.1 CDS ispF NC_016856.1 3090503 3090982 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase complement(3090503..3090982) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239042.1 CDS ispD NC_016856.1 3090982 3091692 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3090982..3091692) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239043.1 CDS ftsB NC_016856.1 3091711 3092022 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(3091711..3092022) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239044.1 CDS STM14_3535 NC_016856.1 3092010 3092120 R hypothetical protein complement(3092010..3092120) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239045.1 CDS ygbE NC_016856.1 3092213 3092569 R similar to Escherichia coli putative cytochrome oxidase subunit (AAC75791.1); hypothetical protein complement(3092213..3092569) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239046.1 CDS cysC NC_016856.1 3092587 3093192 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(3092587..3093192) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239047.1 CDS cysN NC_016856.1 3093179 3094618 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(3093179..3094618) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239048.1 CDS cysD NC_016856.1 3094628 3095536 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3094628..3095536) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239049.1 CDS iap NC_016856.1 3095787 3096833 D catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase isozyme conversion aminopeptidase 3095787..3096833 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239050.1 CDS ygbF NC_016856.1 3098420 3098716 R hypothetical protein complement(3098420..3098716) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239051.1 CDS STM14_3542 NC_016856.1 3098713 3099633 R putative cytoplasmic protein complement(3098713..3099633) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239052.1 CDS ygcH NC_016856.1 3099630 3100280 R putative cytoplasmic protein complement(3099630..3100280) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239053.1 CDS STM14_3544 NC_016856.1 3100262 3101008 R putative cytoplasmic protein complement(3100262..3101008) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239054.1 CDS yghJ NC_016856.1 3101019 3102077 R putative cytoplasmic protein complement(3101019..3102077) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239055.1 CDS STM14_3546 NC_016856.1 3102091 3102651 R putative transposase complement(3102091..3102651) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239056.1 CDS STM14_3547 NC_016856.1 3102648 3104204 R putative cytoplasmic protein complement(3102648..3104204) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239057.1 CDS ygcB NC_016856.1 3104216 3106879 R putative helicase complement(3104216..3106879) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239058.1 CDS STM14_3549 NC_016856.1 3106978 3107112 R hypothetical protein complement(3106978..3107112) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239059.1 CDS sopD NC_016856.1 3107324 3108277 D hypothetical 36.1 kDa protein in cysH 3'region (ORF4) (SW:YGCC_SALTY); secreted by SPI-1; type III secretion; secreted effector protein 3107324..3108277 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239060.1 CDS cysH NC_016856.1 3108365 3109099 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3108365..3109099) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239061.1 CDS cysI NC_016856.1 3109175 3110887 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3109175..3110887) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239062.1 CDS cysJ NC_016856.1 3110887 3112686 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha complement(3110887..3112686) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239063.1 CDS ptpS NC_016856.1 3113110 3113472 D similar to Escherichia coli putative 6-pyruvoyl tetrahydrobiopterin synthase (AAC75807.1); putative 6-pyruvoyl tetrahydrobiopterin synthase 3113110..3113472 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239064.1 CDS STM14_3555 NC_016856.1 3113560 3114357 R beta-lactamase superfamily II; putative metal-dependent hydrolase complement(3113560..3114357) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239065.1 CDS ygcF NC_016856.1 3116367 3117038 R putative organic radical activating enzymes; hypothetical protein complement(3116367..3117038) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239066.1 CDS eno NC_016856.1 3117174 3118472 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3117174..3118472) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239067.1 CDS pyrG NC_016856.1 3118555 3120192 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3118555..3120192) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239068.1 CDS mazG NC_016856.1 3120420 3121220 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(3120420..3121220) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239069.1 CDS STM14_3560 NC_016856.1 3121321 3121458 D hypothetical protein 3121321..3121458 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239070.1 CDS STM14_3561 NC_016856.1 3121826 3121978 D putative fimbrial subunit 3121826..3121978 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239071.1 CDS STM14_3562 NC_016856.1 3121988 3122278 R hypothetical protein complement(3121988..3122278) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239072.1 CDS STM14_3563 NC_016856.1 3122250 3122525 R contains CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; putative transcriptional regulator complement(3122250..3122525) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239073.1 CDS relA NC_016856.1 3122690 3124924 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase complement(3122690..3124924) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239074.1 CDS rumA NC_016856.1 3124976 3126271 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3124976..3126271) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239075.1 CDS barA NC_016856.1 3126329 3129085 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3126329..3129085 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239076.1 CDS STM14_3567 NC_016856.1 3129129 3130271 R putative glycerate kinase 2 complement(3129129..3130271) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239077.1 CDS gudD NC_016856.1 3130349 3131689 R similar to Escherichia coli putative glucarate dehydratase (AAC75829.1); d-glucarate dehydratase complement(3130349..3131689) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239078.1 CDS ygcY NC_016856.1 3131710 3133050 R similar to Escherichia coli putative glucarate dehydratase (AAC75830.1); putative D-glucarate dehydratase complement(3131710..3133050) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239079.1 CDS gudT NC_016856.1 3133047 3134405 R similar to Escherichia coli putative transport protein (AAC75831.1); MFS family; putative D-glucarate permease complement(3133047..3134405) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239080.1 CDS STM14_3571 NC_016856.1 3134509 3134736 D hypothetical protein 3134509..3134736 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239081.1 CDS STM14_3572 NC_016856.1 3134886 3135335 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3134886..3135335) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239082.1 CDS yqcB NC_016856.1 3135354 3136136 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(3135354..3136136) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239083.1 CDS yqcC NC_016856.1 3136136 3136465 R putative cytoplasmic protein complement(3136136..3136465) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239084.1 CDS syd NC_016856.1 3137077 3137622 R putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3137077..3137622) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239085.1 CDS queF NC_016856.1 3137691 3138539 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3137691..3138539 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239086.1 CDS ygdH NC_016856.1 3138652 3140016 D putative nucleotide binding protein 3138652..3140016 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239087.1 CDS STM14_3579 NC_016856.1 3140022 3140165 D hypothetical protein 3140022..3140165 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239088.1 CDS STM14_3580 NC_016856.1 3140255 3140359 D hypothetical protein 3140255..3140359 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239089.1 CDS sdaC NC_016856.1 3140581 3141870 D similar to Escherichia coli probable serine transporter (AAC75838.1); HAAAP family; putative serine transport protein 3140581..3141870 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239090.1 CDS sdaB NC_016856.1 3141929 3143296 D similar to Escherichia coli L-serine dehydratase; deaminase; L-SD2 (AAC75839.1); L-serine dehydratase/L-threonine deaminase 2 3141929..3143296 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239091.1 CDS STM14_3583 NC_016856.1 3143293 3143478 R hypothetical protein complement(3143293..3143478) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239092.1 CDS xni NC_016856.1 3143407 3144222 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3143407..3144222 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239093.1 CDS STM14_3585 NC_016856.1 3144205 3144342 R L-1,2-propanediol oxidoreductase complement(3144205..3144342) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239094.1 CDS fucO NC_016856.1 3144314 3145462 R similar to Escherichia coli L-1,2-propanediol oxidoreductase (AAC75841.1); L-1,2-propanediol oxidoreductase complement(3144314..3145462) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239095.1 CDS fucA NC_016856.1 3145479 3146126 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase complement(3145479..3146126) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239096.1 CDS STM14_3588 NC_016856.1 3146280 3146447 R hypothetical protein complement(3146280..3146447) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239097.1 CDS fucI NC_016856.1 3148029 3149804 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3148029..3149804 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239098.1 CDS fucK NC_016856.1 3149905 3151323 D similar to Escherichia coli L-fuculokinase (AAC75845.1); L-fuculokinase 3149905..3151323 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239099.1 CDS fucU NC_016856.1 3151325 3151747 D similar to Escherichia coli protein of fucose operon (AAC75846.1); putative L-fucose-binding protein 3151325..3151747 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239100.1 CDS fucR NC_016856.1 3151805 3152515 D regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3151805..3152515 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239101.1 CDS ygdE NC_016856.1 3152574 3153674 R putative RNA 2'-O-ribose methyltransferase complement(3152574..3153674) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239102.1 CDS ygdD NC_016856.1 3153667 3154062 R hypothetical protein complement(3153667..3154062) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239103.1 CDS gcvA NC_016856.1 3154081 3154998 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3154081..3154998) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239104.1 CDS ygdI NC_016856.1 3155345 3155572 R putative lipoprotein complement(3155345..3155572) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239105.1 CDS csdA NC_016856.1 3155765 3156970 D cysteine sulfinate desulfinase 3155765..3156970 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239106.1 CDS ygdK NC_016856.1 3156970 3157413 D similar to SufE; putative FeS center assembly protein 3156970..3157413 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239107.1 CDS STM14_3600 NC_016856.1 3157563 3157685 D hypothetical protein 3157563..3157685 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239108.1 CDS STM14_3601 NC_016856.1 3157686 3158600 D putative integral membrane protein 3157686..3158600 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239109.1 CDS ygdL NC_016856.1 3158652 3159458 R similar to Escherichia coli putative enzyme (AAC75854.1); hypothetical protein complement(3158652..3159458) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239110.1 CDS mltA NC_016856.1 3159568 3160665 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A complement(3159568..3160665) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239111.1 CDS amiC NC_016856.1 3161165 3162418 R similar to Escherichia coli putative amidase (AAC75856.1); N-acetylmuramoyl-L-alanine amidase complement(3161165..3162418) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239112.1 CDS argA NC_016856.1 3162651 3163982 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3162651..3163982 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239113.1 CDS recD NC_016856.1 3164085 3165920 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha complement(3164085..3165920) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239114.1 CDS recB NC_016856.1 3165917 3169462 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta complement(3165917..3169462) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239115.1 CDS ptr NC_016856.1 3169455 3172343 R similar to Escherichia coli protease III (AAC75860.1); protease III complement(3169455..3172343) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239116.1 CDS recC NC_016856.1 3172521 3175892 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma complement(3172521..3175892) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239117.1 CDS ppdC NC_016856.1 3175908 3176228 R similar to Escherichia coli prepilin peptidase dependent protein C (AAC75862.1); putative component involved type IV pilin biogenesis; hypothetical protein complement(3175908..3176228) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239118.1 CDS ygdB NC_016856.1 3176213 3176620 R hypothetical protein complement(3176213..3176620) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239119.1 CDS ppdB NC_016856.1 3176617 3177180 R similar to Escherichia coli prepilin peptidase dependent protein B (AAC75864.1); putative component involved in type IV pilin biogenesis; hypothetical protein complement(3176617..3177180) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239120.1 CDS ppdA NC_016856.1 3177171 3177641 R similar to Escherichia coli prepilin peptidase dependent protein A (AAC75865.1); putative component innvolved in type IV pilin biogenesis; hypothetical protein complement(3177171..3177641) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239121.1 CDS STM14_3616 NC_016856.1 3177651 3177833 D hypothetical protein 3177651..3177833 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239122.1 CDS thyA NC_016856.1 3177826 3178620 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(3177826..3178620) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239123.1 CDS lgt NC_016856.1 3178627 3179502 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3178627..3179502) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239124.1 CDS STM14_3619 NC_016856.1 3179499 3179657 R hypothetical protein complement(3179499..3179657) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239125.1 CDS ptsP NC_016856.1 3179718 3181964 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein complement(3179718..3181964) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239126.1 CDS ygdP NC_016856.1 3181977 3182507 R Hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3181977..3182507) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239127.1 CDS STM14_3622 NC_016856.1 3182548 3182661 R hypothetical protein complement(3182548..3182661) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239128.1 CDS STM14_3623 NC_016856.1 3182641 3182757 D hypothetical protein 3182641..3182757 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239129.1 CDS STM14_3624 NC_016856.1 3182858 3183004 R hypothetical protein complement(3182858..3183004) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239130.1 CDS STM14_3625 NC_016856.1 3183029 3183154 D hypothetical protein 3183029..3183154 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239131.1 CDS STM14_3626 NC_016856.1 3183053 3183160 R hypothetical protein complement(3183053..3183160) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239132.1 CDS mutH NC_016856.1 3183190 3183885 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3183190..3183885 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239133.1 CDS STM14_3628 NC_016856.1 3183985 3184095 D hypothetical protein 3183985..3184095 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239134.1 CDS ygdQ NC_016856.1 3184067 3184780 D similar to Escherichia coli putative transport protein (AAC75871.1); integral membrane protein; putative transport protein 3184067..3184780 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239135.1 CDS ygdR NC_016856.1 3184950 3185168 D POT family; putative peptide transport protein 3184950..3185168 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239136.1 CDS STM14_3631 NC_016856.1 3185172 3185342 D hypothetical protein 3185172..3185342 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239137.1 CDS tas NC_016856.1 3185359 3186399 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; putative aldo-keto reductase 3185359..3186399 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239138.1 CDS ygeD NC_016856.1 3186486 3187688 R similar to Escherichia coli putative resistance protein (AAC75874.1); hypothetical protein complement(3186486..3187688) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239139.1 CDS aas NC_016856.1 3187681 3189840 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(3187681..3189840) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239140.1 CDS STM14_3635 NC_016856.1 3190309 3190434 R hypothetical protein complement(3190309..3190434) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239141.1 CDS galR NC_016856.1 3190433 3191461 D controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3190433..3191461 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239142.1 CDS STM14_3637 NC_016856.1 3191472 3192494 D similar to Escherichia coli ascBF operon repressor (AAC75756.1); putative transcriptional regulator 3191472..3192494 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239143.1 CDS lysA NC_016856.1 3192504 3193766 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(3192504..3193766) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239144.1 CDS lysR NC_016856.1 3193884 3194819 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3193884..3194819 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239145.1 CDS ygeA NC_016856.1 3194791 3195498 R similar to Escherichia coli putative resistance proteins (AAC75879.1); putative racemase complement(3194791..3195498) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239146.1 CDS araE NC_016856.1 3195611 3197029 R similar to Escherichia coli low-affinity L-arabinose transport system proton symport protein (AAC75880.1); MFS family; L-arabinose/proton symport protein complement(3195611..3197029) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239147.1 CDS STM14_3642 NC_016856.1 3197131 3197247 R hypothetical protein complement(3197131..3197247) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239148.1 CDS kduD NC_016856.1 3197383 3198144 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase complement(3197383..3198144) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239149.1 CDS kduI NC_016856.1 3198201 3199037 R 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase complement(3198201..3199037) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239150.1 CDS STM14_3645 NC_016856.1 3199028 3199198 R hypothetical protein complement(3199028..3199198) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239151.1 CDS yqeF NC_016856.1 3199467 3200645 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3199467..3200645) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239152.1 CDS STM14_3647 NC_016856.1 3200768 3201631 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73606.1); LysR family; putative transcriptional regulator complement(3200768..3201631) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239153.1 CDS STM14_3648 NC_016856.1 3201708 3202190 D putative inner membrane protein 3201708..3202190 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239154.1 CDS STM14_3649 NC_016856.1 3202193 3202315 D hypothetical protein 3202193..3202315 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239155.1 CDS STM14_3650 NC_016856.1 3202332 3203561 D similar to Escherichia coli putative transporter protein (AAC75884.1); putative transport protein 3202332..3203561 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239156.1 CDS yohL NC_016856.1 3203592 3203864 R putative cytoplasmic protein complement(3203592..3203864) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239157.1 CDS yohM NC_016856.1 3203986 3204894 D membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3203986..3204894 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239158.1 CDS STM14_3653 NC_016856.1 3205104 3205862 R similar to transcriptional regulator SprB (gi|5007028); putative cytoplasmic protein complement(3205104..3205862) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239159.1 CDS STM14_3654 NC_016856.1 3205849 3206361 R hypothetical protein complement(3205849..3206361) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239160.1 CDS STM14_3655 NC_016856.1 3206505 3207581 R putative outer membrane protein complement(3206505..3207581) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239161.1 CDS stdC NC_016856.1 3207578 3208321 R similar to Escherichia coli putative chaperone (AAC73811.1); putative fimbrial chaperone complement(3207578..3208321) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239162.1 CDS stdB NC_016856.1 3208362 3210851 R similar to Escherichia coli putative membrane protein (AAC76082.1); putative outer membrane usher protein complement(3208362..3210851) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239163.1 CDS STM14_3658 NC_016856.1 3210549 3210968 D hypothetical protein 3210549..3210968 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239164.2 CDS stdA NC_016856.1 3210971 3211555 R similar to Escherichia coli putative fimbrial-like protein (AAC73813.1); putative fimbrial-like protein complement(3210971..3211555) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239165.1 CDS STM14_3660 NC_016856.1 3212274 3212906 R hypothetical protein complement(3212274..3212906) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239166.1 CDS STM14_3661 NC_016856.1 3212953 3213489 R similar to Escherichia coli outer membrane protein X (AAC73901.1); Ail/OmpX-like protein complement(3212953..3213489) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239167.1 CDS STM14_3662 NC_016856.1 3213534 3213719 R hypothetical protein complement(3213534..3213719) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239168.1 CDS STM14_3663 NC_016856.1 3214295 3214693 R stability determinant protein; plasmid maintenance protein complement(3214295..3214693) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239169.1 CDS STM14_3664 NC_016856.1 3214693 3215070 R putative virulence-associated protein complement(3214693..3215070) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_006894096.1 CDS STM14_3665 NC_016856.1 3215088 3215348 D endonuclease 3215088..3215348 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239170.1 CDS STM14_3666 NC_016856.1 3215425 3215670 R hypothetical protein complement(3215425..3215670) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239171.1 CDS STM14_3667 NC_016856.1 3215623 3216429 D putative inner membrane protein 3215623..3216429 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239172.1 CDS STM14_3669 NC_016856.1 3216714 3217472 R similar to Escherichia coli putative lipoprotein (AAC75903.1); putative metalloendopeptidase complement(3216714..3217472) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239173.1 CDS STM14_3670 NC_016856.1 3217519 3217686 D hypothetical protein 3217519..3217686 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239174.1 CDS idi NC_016856.1 3217737 3218282 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3217737..3218282 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239175.1 CDS lysS NC_016856.1 3218358 3219875 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(3218358..3219875) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239176.1 CDS prfB NC_016856.1 3219885 3220961 R peptide chain release factor 2; RF-2 (SW:RF2_SALTY); peptide chain release factor 2 complement(3219885..3220961) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239177.1 CDS recJ NC_016856.1 3221088 3222821 R 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ complement(3221088..3222821) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239178.1 CDS dsbC NC_016856.1 3222827 3223540 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC complement(3222827..3223540) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239179.1 CDS xerD NC_016856.1 3223564 3224460 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(3223564..3224460) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239180.1 CDS fldB NC_016856.1 3224573 3225094 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 3224573..3225094 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239181.1 CDS ygfX NC_016856.1 3225147 3225560 R putative inner membrane protein complement(3225147..3225560) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239182.1 CDS ygfY NC_016856.1 3225541 3225807 R hypothetical protein complement(3225541..3225807) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239183.1 CDS STM14_3680 NC_016856.1 3225806 3226042 D hypothetical protein 3225806..3226042 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239184.1 CDS ygfZ NC_016856.1 3226057 3227037 D physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; putative global regulator 3226057..3227037 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239185.1 CDS yqfA NC_016856.1 3227153 3227812 R similar to Escherichia coli putative oxidoreductase (AAC75937.1); putative hemolysin complement(3227153..3227812) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239186.1 CDS yqfB NC_016856.1 3227976 3228287 R hypothetical protein complement(3227976..3228287) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239187.1 CDS bglA NC_016856.1 3228446 3229879 D similar to Escherichia coli 6-phospho-beta-glucosidase A; cryptic (AAC75939.1); 6-phospho-beta-glucosidase 3228446..3229879 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239188.1 CDS STM14_3685 NC_016856.1 3229927 3230820 R putative outer membrane protein complement(3229927..3230820) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239189.1 CDS STM14_3686 NC_016856.1 3230904 3231050 R immunoglobulin VH domain protein complement(3230904..3231050) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239190.1 CDS gcvP NC_016856.1 3231276 3234149 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3231276..3234149) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239191.1 CDS gcvH NC_016856.1 3234312 3234701 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3234312..3234701) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239192.1 CDS gcvT NC_016856.1 3234727 3235821 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(3234727..3235821) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239193.1 CDS STM14_3690 NC_016856.1 3235813 3235968 D hypothetical protein 3235813..3235968 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239194.1 CDS STM14_3691 NC_016856.1 3236175 3236279 D hypothetical protein 3236175..3236279 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239195.1 CDS visC NC_016856.1 3236276 3237478 R hypothetical protein complement(3236276..3237478) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239196.1 CDS STM14_3693 NC_016856.1 3237457 3237624 D hypothetical protein 3237457..3237624 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239197.1 CDS ubiH NC_016856.1 3237604 3238782 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3237604..3238782) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239198.1 CDS pepP NC_016856.1 3238779 3240095 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II complement(3238779..3240095) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239199.1 CDS ygfB NC_016856.1 3240121 3240699 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(3240121..3240699) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239200.1 CDS ygfE NC_016856.1 3240866 3241195 D Z-ring-associated protein 3240866..3241195 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239201.1 CDS ygfA NC_016856.1 3241489 3242037 D ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; putative ligase 3241489..3242037 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239202.1 CDS serA NC_016856.1 3242418 3243650 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(3242418..3243650) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239203.1 CDS STM14_3700 NC_016856.1 3243685 3243795 D hypothetical protein 3243685..3243795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239204.1 CDS rpiA NC_016856.1 3243916 3244575 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(3243916..3244575) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239205.1 CDS STM14_3702 NC_016856.1 3244595 3244732 D hypothetical protein 3244595..3244732 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239206.1 CDS iciA NC_016856.1 3244729 3245622 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3244729..3245622 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239207.1 CDS STM14_3704 NC_016856.1 3245634 3245885 D hypothetical protein 3245634..3245885 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239208.1 CDS yggE NC_016856.1 3245888 3246634 R putative periplasmic immunogenic protein; hypothetical protein complement(3245888..3246634) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239209.1 CDS yggA NC_016856.1 3246728 3247363 R Involved in the export of arginine; arginine exporter protein complement(3246728..3247363) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239210.1 CDS yggB NC_016856.1 3247563 3248423 R participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS complement(3247563..3248423) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239211.1 CDS fba NC_016856.1 3248650 3249729 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(3248650..3249729) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239212.1 CDS pgk NC_016856.1 3249831 3250994 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3249831..3250994) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239213.1 CDS epd NC_016856.1 3251016 3252062 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(3251016..3252062) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239214.1 CDS STM14_3711 NC_016856.1 3252233 3252433 D hypothetical protein 3252233..3252433 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239215.1 CDS STM14_3712 NC_016856.1 3252436 3252861 D putative DNA-binding protein 3252436..3252861 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239216.1 CDS STM14_3713 NC_016856.1 3252887 3253465 D putative inner membrane protein 3252887..3253465 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239217.1 CDS STM14_3714 NC_016856.1 3253466 3254173 D CbiQ and related transporter; putative ABC-type cobalt transport system permease component 3253466..3254173 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239218.1 CDS STM14_3715 NC_016856.1 3254161 3254838 D similar to Escherichia coli ATP-binding component of putrescine transport system (AAC73942.1); putative ABC-type cobalt transport system ATP-binding component 3254161..3254838 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239219.1 CDS STM14_3716 NC_016856.1 3254832 3255488 D similar to Escherichia coli ATP-binding component of sulfate permease A protein; chromate resistance (AAC75475.1); putative ABC-type cobalt transport system ATP-binding component 3254832..3255488 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239220.1 CDS tktA NC_016856.1 3255532 3257523 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(3255532..3257523) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239221.1 CDS STM14_3718 NC_016856.1 3257540 3257698 D hypothetical protein 3257540..3257698 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239222.1 CDS yggG NC_016856.1 3257799 3258557 D contains putative chaperone function; putative Zn-dependent protease 3257799..3258557 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239223.1 CDS speB NC_016856.1 3258658 3259578 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3258658..3259578) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239224.1 CDS STM14_3721 NC_016856.1 3259783 3260598 R putative hydrolase/acyltransferase complement(3259783..3260598) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239225.1 CDS STM14_3722 NC_016856.1 3260720 3260824 D hypothetical protein 3260720..3260824 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239226.1 CDS STM14_3723 NC_016856.1 3260953 3261426 R putative mannitol dehydrogenase complement(3260953..3261426) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239227.1 CDS STM14_3724 NC_016856.1 3261465 3262472 R similar to Escherichia coli putative malate dehydrogenase (AAC73619.1); putative malate/L-lactate dehydrogenase complement(3261465..3262472) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239228.1 CDS STM14_3725 NC_016856.1 3262486 3263502 R similar to Escherichia coli putative oxidoreductase (AAC77314.1); putative zinc-binding dehydrogenase complement(3262486..3263502) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239229.1 CDS STM14_3726 NC_016856.1 3263505 3264977 R similar to Escherichia coli putative oxidoreductase (AAC75233.1); putative mannitol dehydrogenase complement(3263505..3264977) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239230.1 CDS STM14_3727 NC_016856.1 3266219 3266968 R similar to Escherichia coli regulator for uxu operon (AAC77280.1); GntR family; putative regulatory protein complement(3266219..3266968) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239231.1 CDS STM14_3728 NC_016856.1 3267173 3267904 R putative outer membrane lipoprotein complement(3267173..3267904) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239232.1 CDS speA NC_016856.1 3268048 3270024 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(3268048..3270024) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239233.1 CDS yqgB NC_016856.1 3270033 3270164 R putative inner membrane protein complement(3270033..3270164) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239234.1 CDS yqgD NC_016856.1 3270459 3270758 R putative inner membrane protein complement(3270459..3270758) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239235.1 CDS metK NC_016856.1 3270814 3271968 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3270814..3271968 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239236.1 CDS STM14_3734 NC_016856.1 3271996 3272121 R hypothetical protein complement(3271996..3272121) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239237.1 CDS galP NC_016856.1 3272461 3273855 D similar to Escherichia coli galactose-proton symport of transport system (AAC75980.1); MFS family; galactose/proton symporter 3272461..3273855 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239238.1 CDS sprT NC_016856.1 3273934 3274431 D hypothetical protein 3273934..3274431 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239239.1 CDS endA NC_016856.1 3274526 3275233 D similar to Escherichia coli DNA-specific endonuclease I (AAC75982.1); DNA-specific endonuclease I 3274526..3275233 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239240.1 CDS yggJ NC_016856.1 3275310 3276041 D hypothetical protein 3275310..3276041 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239241.1 CDS gshB NC_016856.1 3276061 3277008 D The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3276061..3277008 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239242.1 CDS yqgE NC_016856.1 3277224 3277787 D hypothetical protein 3277224..3277787 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239243.1 CDS yqgF NC_016856.1 3277787 3278203 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3277787..3278203 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239244.1 CDS STM14_3742 NC_016856.1 3278250 3278936 R putative transcriptional regulator complement(3278250..3278936) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239245.1 CDS yggR NC_016856.1 3279068 3280048 R similar to Escherichia coli putative protein transport (AAC75987.1); may be involved in type II secretion; twitching motility protein complement(3279068..3280048) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239246.1 CDS yggS NC_016856.1 3280066 3280770 D putative enzyme with a TIM-barrel fold; hypothetical protein 3280066..3280770 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239247.1 CDS yggT NC_016856.1 3280789 3281355 D similar to Escherichia coli putative resistance protein (AAC75989.1); putative integral membrane protein 3280789..3281355 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239248.1 CDS yggU NC_016856.1 3281352 3281642 D hypothetical protein 3281352..3281642 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239249.1 CDS yggV NC_016856.1 3281650 3282243 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3281650..3282243 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239250.1 CDS yggW NC_016856.1 3282236 3283372 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3282236..3283372 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239251.1 CDS yggM NC_016856.1 3283463 3284470 R similar to Escherichia coli putative alpha helix chain (AAC75993.1); hypothetical protein complement(3283463..3284470) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239252.1 CDS ansB NC_016856.1 3284603 3285649 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II complement(3284603..3285649) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239253.1 CDS STM14_3751 NC_016856.1 3285668 3285820 R hypothetical protein complement(3285668..3285820) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239254.1 CDS yggN NC_016856.1 3285838 3286557 R hypothetical protein complement(3285838..3286557) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239255.1 CDS yggL NC_016856.1 3286607 3286933 R hypothetical protein complement(3286607..3286933) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239256.1 CDS trmB NC_016856.1 3286933 3287652 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7))-methyltransferase complement(3286933..3287652) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239257.1 CDS mutY NC_016856.1 3287807 3288859 D A/G-specific adenine glycosylase (SW:MUTY_SALTY); adenine DNA glycosylase 3287807..3288859 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239258.1 CDS yggX NC_016856.1 3288887 3289162 D hypothetical protein 3288887..3289162 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239259.1 CDS STM14_3757 NC_016856.1 3289138 3289263 R hypothetical protein complement(3289138..3289263) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239260.1 CDS mltC NC_016856.1 3289275 3290360 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 3289275..3290360 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239261.1 CDS STM14_3759 NC_016856.1 3290425 3290550 R hypothetical protein complement(3290425..3290550) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239262.1 CDS speC NC_016856.1 3291026 3293161 R similar to Escherichia coli ornithine decarboxylase isozyme (AAC76002.1); ornithine decarboxylase complement(3291026..3293161) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239263.1 CDS STM14_3762 NC_016856.1 3293235 3293459 R hypothetical protein complement(3293235..3293459) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239264.1 CDS STM14_3763 NC_016856.1 3293413 3293547 D hypothetical protein 3293413..3293547 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239265.1 CDS yqgA NC_016856.1 3293586 3294293 D similar to Escherichia coli putative transport protein (AAC76003.1); putative inner membrane protein 3293586..3294293 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239266.1 CDS STM14_3766 NC_016856.1 3294633 3295067 R putative lactoylglutathione lyase complement(3294633..3295067) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239267.1 CDS STM14_3767 NC_016856.1 3295078 3296403 R similar to Escherichia coli putative coenzyme A transferase (AAC75957.1); putative acetyl-CoA hydrolase complement(3295078..3296403) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239268.1 CDS STM14_3768 NC_016856.1 3296428 3296955 R similar to Escherichia coli putative aldehyde dehydrogenase (AAC74469.1); putative monoamine oxidase complement(3296428..3296955) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239269.1 CDS STM14_3769 NC_016856.1 3296979 3297821 R similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); LysR family; putative transcriptional regulator complement(3296979..3297821) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239270.1 CDS STM14_3770 NC_016856.1 3297913 3298791 D putative transcriptional regulator (gi|5852589); LysR family; putative transcriptional regulator 3297913..3298791 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239271.1 CDS STM14_3771 NC_016856.1 3298839 3300578 R similar to Escherichia coli putative sulfatase (AAC74571.1); putative arylsulfatase complement(3298839..3300578) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239272.1 CDS STM14_3772 NC_016856.1 3300647 3301831 R similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator complement(3300647..3301831) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239273.1 CDS STM14_3773 NC_016856.1 3301831 3301965 R hypothetical protein complement(3301831..3301965) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239274.1 CDS STM14_3774 NC_016856.1 3302110 3302214 D hypothetical protein 3302110..3302214 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239275.1 CDS STM14_3775 NC_016856.1 3302343 3303026 D similar to Escherichia coli putative regulator (AAC76545.1); contains CheY-like receiver domain and HTH DNA-binding domain; putative response regulator 3302343..3303026 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239276.1 CDS STM14_3776 NC_016856.1 3303130 3303687 R putative cytoplasmic protein complement(3303130..3303687) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239277.1 CDS STM14_3777 NC_016856.1 3303665 3305164 R similar to Escherichia coli proline permease transport protein (AAC73505.1); putative amino acid transporter complement(3303665..3305164) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239278.1 CDS STM14_3778 NC_016856.1 3305157 3305300 R hypothetical protein complement(3305157..3305300) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239279.1 CDS STM14_3779 NC_016856.1 3305240 3305395 R putative cytoplasmic protein complement(3305240..3305395) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239280.1 CDS STM14_3780 NC_016856.1 3305373 3305747 R putative cytoplasmic protein complement(3305373..3305747) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239281.1 CDS STM14_3781 NC_016856.1 3305762 3307063 R similar to Escherichia coli probable oxidoreductase (AAC74383.1); putative oxidoreductase complement(3305762..3307063) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239282.1 CDS STM14_3782 NC_016856.1 3307225 3308709 D similar to Escherichia coli phenylacetaldehyde dehydrogenase (AAC74467.1); putative NAD-dependent aldehyde dehydrogenase 3307225..3308709 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239283.1 CDS STM14_3783 NC_016856.1 3308724 3308864 D hypothetical protein 3308724..3308864 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239284.1 CDS STM14_3784 NC_016856.1 3308845 3309225 R putative cytoplasmic protein complement(3308845..3309225) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239285.1 CDS STM14_3785 NC_016856.1 3309225 3309710 R putative cytoplasmic protein complement(3309225..3309710) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239286.1 CDS STM14_3786 NC_016856.1 3310018 3310173 D hypothetical protein 3310018..3310173 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239287.1 CDS STM14_3787 NC_016856.1 3310436 3311359 R putative xylanase/chitin deacetylase complement(3310436..3311359) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239288.1 CDS STM14_3789 NC_016856.1 3312290 3312427 D hypothetical protein 3312290..3312427 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239289.1 CDS STM14_3790 NC_016856.1 3312496 3312606 R hypothetical protein complement(3312496..3312606) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239290.1 CDS STM14_3791 NC_016856.1 3312670 3313974 R similar to Escherichia coli transport of hexuronates (AAC76128.1); putative permease complement(3312670..3313974) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239291.1 CDS STM14_3792 NC_016856.1 3314050 3314181 D hypothetical protein 3314050..3314181 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239292.1 CDS STM14_3793 NC_016856.1 3314188 3314334 R hypothetical protein complement(3314188..3314334) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239293.1 CDS STM14_3794 NC_016856.1 3314216 3314410 D hypothetical protein 3314216..3314410 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239294.1 CDS STM14_3795 NC_016856.1 3314379 3315563 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3314379..3315563 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239295.1 CDS STM14_3796 NC_016856.1 3315674 3317146 D similar to Escherichia coli D-mannonate oxidoreductase (AAC77279.1); putative D-mannonate oxidoreductase 3315674..3317146 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239296.1 CDS STM14_3797 NC_016856.1 3317158 3318570 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3317158..3318570 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239297.1 CDS STM14_3798 NC_016856.1 3318584 3318703 D hypothetical protein 3318584..3318703 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239298.1 CDS STM14_3799 NC_016856.1 3318870 3319928 R similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein complement(3318870..3319928) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239299.1 CDS STM14_3800 NC_016856.1 3319990 3320106 R hypothetical protein complement(3319990..3320106) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239300.1 CDS STM14_3801 NC_016856.1 3320290 3320487 D hypothetical protein 3320290..3320487 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239301.1 CDS gsp NC_016856.1 3320598 3322454 R catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3320598..3322454) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239302.1 CDS STM14_3803 NC_016856.1 3322464 3322571 R hypothetical protein complement(3322464..3322571) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239303.1 CDS yghU NC_016856.1 3322681 3323547 D YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3322681..3323547 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239304.1 CDS STM14_3805 NC_016856.1 3323615 3324325 R hypothetical protein complement(3323615..3324325) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239305.1 CDS STM14_3806 NC_016856.1 3324325 3325377 R putative periplasmic ferrichrome-binding protein complement(3324325..3325377) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239306.1 CDS hybG NC_016856.1 3325453 3325701 R similar to Escherichia coli hydrogenase-2 chaperone-like protein; may effect maturation of large subunit of hydrogenase-2 (AAC76026.1); hydrogenase 2 accessory protein HypG complement(3325453..3325701) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239307.1 CDS hypA_2 NC_016856.1 3325729 3326070 R plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF complement(3325729..3326070) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239308.1 CDS hybE NC_016856.1 3326063 3326551 R similar to Escherichia coli member of hyb operon (AAC76028.1); hydrogenase 2-specific chaperone complement(3326063..3326551) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239309.1 CDS hybD NC_016856.1 3326544 3327038 R protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase complement(3326544..3327038) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239310.1 CDS hybC NC_016856.1 3327038 3328741 R involved in hydrogen uptake; hydrogenase 2 large subunit complement(3327038..3328741) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239311.1 CDS hybB NC_016856.1 3328738 3329916 R HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; putative hydrogenase 2 b cytochrome subunit complement(3328738..3329916) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239312.1 CDS hybA NC_016856.1 3329906 3330892 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA complement(3329906..3330892) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239313.1 CDS hypO NC_016856.1 3330895 3332013 R involved in hydrogen uptake; hydrogenase 2 small subunit complement(3330895..3332013) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239314.1 CDS STM14_3815 NC_016856.1 3332051 3332179 D hypothetical protein 3332051..3332179 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239315.1 CDS yghW NC_016856.1 3332203 3332490 R putative cytoplasmic protein complement(3332203..3332490) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239316.1 CDS STM14_3817 NC_016856.1 3332575 3334218 R similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein complement(3332575..3334218) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239317.1 CDS yqhA NC_016856.1 3334525 3335019 R hypothetical protein complement(3334525..3335019) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239318.1 CDS STM14_3819 NC_016856.1 3335174 3335281 D hypothetical protein 3335174..3335281 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239319.1 CDS STM14_3820 NC_016856.1 3335299 3335814 R putative ATP-dependent RNA helicase-like protein complement(3335299..3335814) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239320.1 CDS STM14_3821 NC_016856.1 3335906 3336316 D putative cytoplasmic protein 3335906..3336316 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239321.1 CDS STM14_3822 NC_016856.1 3336303 3336707 D putative cytoplasmic protein 3336303..3336707 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239322.1 CDS yghA NC_016856.1 3336831 3337715 D similar to Escherichia coli putative oxidoreductase (AAC76039.1); oxidoreductase 3336831..3337715 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239323.1 CDS exbD NC_016856.1 3337828 3338253 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD complement(3337828..3338253) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239324.1 CDS exbB NC_016856.1 3338260 3338994 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB complement(3338260..3338994) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239325.1 CDS STM14_3826 NC_016856.1 3338987 3339136 R putative inner membrane protein complement(3338987..3339136) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239326.1 CDS metC NC_016856.1 3339111 3340433 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3339111..3340433 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239327.1 CDS yghB NC_016856.1 3340573 3341232 D hypothetical protein in metC 3'region (SW:YGHB_SALTY); DedA family; hypothetical protein 3340573..3341232 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239328.1 CDS yqhC NC_016856.1 3341296 3342213 R similar to Escherichia coli putative AraC-type regulatory protein (AAC76046.1); AraC/XylS family; putative transcriptional regulator complement(3341296..3342213) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239329.1 CDS STM14_3830 NC_016856.1 3342234 3342434 D hypothetical protein 3342234..3342434 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239330.1 CDS yqhD NC_016856.1 3342388 3343551 D similar to Escherichia coli putative oxidoreductase (AAC76047.1); putative alcohol dehydrogenase 3342388..3343551 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239331.1 CDS dkgA NC_016856.1 3343657 3344484 D methylglyoxal reductase/?-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 3343657..3344484 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239332.1 CDS STM14_3833 NC_016856.1 3344492 3344629 R hypothetical protein complement(3344492..3344629) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239333.1 CDS STM14_3834 NC_016856.1 3344530 3344640 D hypothetical protein 3344530..3344640 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239334.1 CDS STM14_3835 NC_016856.1 3344681 3346135 D similar to Escherichia coli putative membrane pump protein (AAC73857.1); putative cation transporter 3344681..3346135 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239335.1 CDS STM14_3836 NC_016856.1 3346180 3346635 D Ap4A; putative diadenosine tetraphosphatehydrolase 3346180..3346635 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239336.1 CDS STM14_3837 NC_016856.1 3346625 3346789 D hypothetical protein 3346625..3346789 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239337.1 CDS STM14_3838 NC_016856.1 3346793 3346924 R hypothetical protein complement(3346793..3346924) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239338.1 CDS ygiR NC_016856.1 3347190 3349361 R putative FeS oxidoreductase family 2; hypothetical protein complement(3347190..3349361) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239339.1 CDS STM14_3840 NC_016856.1 3349441 3349545 R hypothetical protein complement(3349441..3349545) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239340.1 CDS STM14_3841 NC_016856.1 3349849 3350832 D similar to Escherichia coli putative solute-binding transport protein (AAC76603.1); putative periplasmic dicarboxylate-binding protein 3349849..3350832 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239341.1 CDS STM14_3842 NC_016856.1 3350874 3351356 D putative inner membrane protein 3350874..3351356 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239342.1 CDS ygiK NC_016856.1 3351367 3352674 D hypothetical 46.1 kDa protein in plsC 3'region (SW:YGIK_SALTY); integral membrane protein; putative transporter 3351367..3352674 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239343.1 CDS sufI NC_016856.1 3352719 3354131 R SufI protein precursor (SW:SUFI_SALTY); putative periplasmic protein; repressor protein for FtsI complement(3352719..3354131) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239344.1 CDS plsC NC_016856.1 3354205 3354942 R 1-acyl-SN-glycerol-3-phosphate acyltransferase (SW:PLSC_SALTY); 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3354205..3354942) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239345.1 CDS parC NC_016856.1 3355199 3357457 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3355199..3357457) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239346.1 CDS STM14_3847 NC_016856.1 3357568 3358434 R AraC family; helix-turn-helix; putative regulatory protein complement(3357568..3358434) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239347.1 CDS ygiW NC_016856.1 3358506 3358898 R putative outer membrane protein complement(3358506..3358898) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239348.2 CDS ygiX NC_016856.1 3359050 3359709 D response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3359050..3359709 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239349.1 CDS ygiY NC_016856.1 3359706 3361055 D similar to Escherichia coli putative 2-component sensor protein (AAC76062.1); regulatory protein; sensor protein QseC 3359706..3361055 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239350.1 CDS STM14_3851 NC_016856.1 3361049 3361165 D hypothetical protein 3361049..3361165 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239351.1 CDS mdaB NC_016856.1 3361162 3361743 D similar to Escherichia coli modulator of drug activity B (AAC76064.1); drug modulator; NADPH-specific quinone oxidoreductase 3361162..3361743 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239352.1 CDS ygiN NC_016856.1 3361775 3362089 D putative cytoplasmic protein 3361775..3362089 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239353.1 CDS parE NC_016856.1 3362214 3364106 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3362214..3364106) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239354.1 CDS yqiA NC_016856.1 3364134 3364715 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA complement(3364134..3364715) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239355.1 CDS icc NC_016856.1 3364715 3365542 R similar to Escherichia coli regulator of lacZ (AAC76068.1); cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3364715..3365542) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239356.1 CDS yqiB NC_016856.1 3365567 3365989 R similar to Escherichia coli putative enzyme (AAC76069.1); hypothetical protein complement(3365567..3365989) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239357.1 CDS nudF NC_016856.1 3365986 3366618 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF complement(3365986..3366618) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239358.1 CDS tolC NC_016856.1 3366825 3368294 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3366825..3368294 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239359.1 CDS STM14_3860 NC_016856.1 3368291 3368398 D hypothetical protein 3368291..3368398 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239360.1 CDS ygiB NC_016856.1 3368507 3369178 D hypothetical protein 3368507..3369178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239361.1 CDS ygiC NC_016856.1 3369184 3370347 D similar to Escherichia coli putative synthetase/amidase (AAC76074.1); putative glutathionylspermidine synthase 3369184..3370347 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239362.1 CDS ygiD NC_016856.1 3370409 3371239 R seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein complement(3370409..3371239) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239363.1 CDS ygiE NC_016856.1 3371338 3372111 D zinc transporter ZupT 3371338..3372111 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239364.1 CDS STM14_3865 NC_016856.1 3372178 3372354 R hypothetical protein complement(3372178..3372354) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239365.1 CDS STM14_3866 NC_016856.1 3372754 3374550 D putative arylsulfate sulfotransferase 3372754..3374550 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239366.1 CDS STM14_3867 NC_016856.1 3374570 3375241 D thiol-disulfide isomerase and thioredoxin; putative disulfide bond formation protein 3374570..3375241 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239367.1 CDS STM14_3868 NC_016856.1 3375256 3375933 D putative disulfide oxidoreductase 3375256..3375933 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239368.1 CDS ribB NC_016856.1 3376104 3376757 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3376104..3376757) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239369.1 CDS yqiC NC_016856.1 3377080 3377493 D putative cytoplasmic protein 3377080..3377493 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239370.1 CDS glgS NC_016856.1 3377567 3377776 R Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS complement(3377567..3377776) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239371.1 CDS STM14_3872 NC_016856.1 3377873 3378022 R hypothetical protein complement(3377873..3378022) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239372.1 CDS STM14_3873 NC_016856.1 3378034 3378654 D similar to Escherichia coli putative oxidoreductase (AAC76086.1); putative inner membrane protein 3378034..3378654 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239373.1 CDS yqiK NC_016856.1 3378673 3380352 D similar to Escherichia coli putative membrane protein (AAC76087.1); hypothetical protein 3378673..3380352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239374.1 CDS STM14_3875 NC_016856.1 3380454 3380651 D hypothetical protein 3380454..3380651 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239375.1 CDS rfaE NC_016856.1 3380812 3382245 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3380812..3382245) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239376.1 CDS glnE NC_016856.1 3382293 3385136 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3382293..3385136) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239377.1 CDS ygiF NC_016856.1 3385254 3386555 R putative cytoplasmic protein complement(3385254..3386555) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239378.1 CDS ygiM NC_016856.1 3386797 3387411 D contains putative SH3 domain protein; putative signal transduction protein 3386797..3387411 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239379.1 CDS cca NC_016856.1 3387474 3388715 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3387474..3388715 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239380.1 CDS uppP NC_016856.1 3388820 3389644 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3388820..3389644) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239381.1 CDS folB NC_016856.1 3389739 3390101 R catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3389739..3390101) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239382.1 CDS ygiH NC_016856.1 3390205 3390816 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3390205..3390816 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239383.1 CDS STM14_3884 NC_016856.1 3390891 3391163 D hypothetical protein 3390891..3391163 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239384.1 CDS gcp NC_016856.1 3391067 3392080 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotese from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; O-sialoglycoprotein endopeptidase complement(3391067..3392080) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239385.1 CDS rpsU NC_016856.1 3392308 3392523 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3392308..3392523 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239386.1 CDS dnaG NC_016856.1 3392759 3394504 D synthesizes RNA primers at the replication forks; DNA primase 3392759..3394504 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239387.1 CDS rpoD NC_016856.1 3394519 3396501 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3394519..3396501 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239388.1 CDS mug NC_016856.1 3396625 3397131 R G/U mismatch-specific DNA glycosylase complement(3396625..3397131) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239389.1 CDS yqjH NC_016856.1 3397412 3398179 R putative transporter complement(3397412..3398179) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239390.1 CDS yqjI NC_016856.1 3398411 3399058 D putative transcriptional regulator 3398411..3399058 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239391.1 CDS STM14_3893 NC_016856.1 3399055 3400620 R similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein complement(3399055..3400620) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239392.1 CDS aer NC_016856.1 3401008 3402528 R similar to Escherichia coli aerotaxis sensor receptor; flavoprotein (AAC76107.1); senses cellular redox state or proton motive force; aerotaxis sensor receptor complement(3401008..3402528) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239393.1 CDS STM14_3895 NC_016856.1 3402540 3402695 D hypothetical protein 3402540..3402695 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239394.1 CDS oat NC_016856.1 3402931 3404337 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3402931..3404337 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239395.1 CDS STM14_3897 NC_016856.1 3404350 3404460 D hypothetical protein 3404350..3404460 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239396.1 CDS fadH NC_016856.1 3404508 3406526 D similar to Escherichia coli putative NADPH dehydrogenase (AAC76116.1); 2,4-dienoyl-CoA reductase 3404508..3406526 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239397.1 CDS ygjO NC_016856.1 3406607 3407743 R similar to Escherichia coli putative enzyme (AAC76119.1); putative methyltransferase complement(3406607..3407743) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239398.1 CDS ygjP NC_016856.1 3407829 3408326 D putative metal-dependent hydrolase 3407829..3408326 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239399.1 CDS STM14_3901 NC_016856.1 3408358 3408459 R hypothetical protein complement(3408358..3408459) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239400.1 CDS ygjQ NC_016856.1 3408478 3409170 D putative integral membrane protein 3408478..3409170 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239401.1 CDS ygjR NC_016856.1 3409259 3410257 D putative dehydrogenase 3409259..3410257 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239402.1 CDS STM14_3904 NC_016856.1 3410298 3410435 D hypothetical protein 3410298..3410435 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239403.1 CDS ygjT NC_016856.1 3410530 3411498 D similar to Escherichia coli putative transport protein (AAC76123.1); putative tellurite resistance protein 3410530..3411498 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239404.1 CDS ygjU NC_016856.1 3411753 3412997 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3411753..3412997 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239405.1 CDS STM14_3907 NC_016856.1 3412994 3413194 R hypothetical protein complement(3412994..3413194) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239406.1 CDS yqjA NC_016856.1 3413447 3414109 D DedA family; hypothetical protein 3413447..3414109 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239407.1 CDS yqjB NC_016856.1 3414113 3414496 D hypothetical protein 3414113..3414496 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239408.1 CDS yqjC NC_016856.1 3414641 3415009 D hypothetical protein 3414641..3415009 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239409.1 CDS yqjD NC_016856.1 3415051 3415356 D putative inner membrane protein 3415051..3415356 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239410.1 CDS yqjE NC_016856.1 3415359 3415757 D putative inner membrane protein 3415359..3415757 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239411.1 CDS yqjK NC_016856.1 3415754 3416053 D putative inner membrane protein 3415754..3416053 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239412.1 CDS yqjF NC_016856.1 3416198 3416683 D hypothetical protein 3416198..3416683 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239413.1 CDS yqjG NC_016856.1 3416751 3417737 D similar to Escherichia coli putative transferase (AAC76137.1); putative glutathione S-transferase 3416751..3417737 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239414.1 CDS yhaH NC_016856.1 3417861 3418226 D similar to Escherichia coli putative cytochrome (AAC76138.1); putative inner membrane protein 3417861..3418226 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239415.1 CDS yhaJ NC_016856.1 3418265 3419161 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76140.1); LysR family; putative transcriptional regulator complement(3418265..3419161) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239416.1 CDS yhaK NC_016856.1 3419266 3419967 D putative cytoplasmic protein 3419266..3419967 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239417.1 CDS yhaL NC_016856.1 3419991 3420155 D putative cytoplasmic protein 3419991..3420155 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239418.1 CDS yhaN NC_016856.1 3420268 3421578 R putative inner membrane protein complement(3420268..3421578) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239419.1 CDS yhaO NC_016856.1 3421604 3423043 R similar to Escherichia coli putative transport system permease protein (AAC76145.1); HAAAP family; putative transport protein complement(3421604..3423043) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239420.1 CDS tdcG NC_016856.1 3423251 3424615 R similar to Escherichia coli L-serine dehydratase; deaminase L-SD2 (AAC75839.1); L-serine deaminase complement(3423251..3424615) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239421.1 CDS tdcE NC_016856.1 3424685 3426979 R similar to Escherichia coli probable formate acetyltransferase 3 (AAC76149.1); pyruvate formate-lyase 4/2-ketobutyrate formate-lyase complement(3424685..3426979) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239422.1 CDS tdcD NC_016856.1 3427013 3428221 R catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase complement(3427013..3428221) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239423.1 CDS tdcC NC_016856.1 3428287 3429618 R involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC complement(3428287..3429618) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239424.1 CDS tdcB NC_016856.1 3429639 3430628 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase complement(3429639..3430628) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239425.1 CDS tdcA NC_016856.1 3430726 3431664 R regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA complement(3430726..3431664) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239426.1 CDS garK NC_016856.1 3433463 3434608 R glycerate kinase complement(3433463..3434608) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239427.1 CDS garR NC_016856.1 3434706 3435596 R catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase complement(3434706..3435596) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239428.1 CDS garL NC_016856.1 3435622 3436392 R alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3435622..3436392) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239429.1 CDS STM14_3932 NC_016856.1 3436508 3436648 R hypothetical protein complement(3436508..3436648) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239430.1 CDS STM14_3933 NC_016856.1 3436575 3436694 D hypothetical protein 3436575..3436694 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239431.1 CDS STM14_3934 NC_016856.1 3436648 3436776 D hypothetical protein 3436648..3436776 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239432.1 CDS garD NC_016856.1 3436922 3438493 D similar to Escherichia coli putative hydrolase (AAC76162.1); galactarate dehydratase 3436922..3438493 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239433.1 CDS STM14_3936 NC_016856.1 3438733 3439680 R similar to Escherichia coli ribokinase (AAC76775.1); ribokinase family; putative sugar kinase complement(3438733..3439680) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239434.1 CDS agaR NC_016856.1 3439691 3440524 R similar to Escherichia coli putative DeoR-type transcriptional regulator of Aga operon (AAC76165.1); DeoR family; AGA operon transcriptional repressor complement(3439691..3440524) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239435.1 CDS STM14_3938 NC_016856.1 3440518 3440661 D hypothetical protein 3440518..3440661 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239436.1 CDS gatY_1 NC_016856.1 3440858 3441712 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 3440858..3441712 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239437.1 CDS STM14_3940 NC_016856.1 3441723 3442637 D similar to Escherichia coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); putative fructose-1-phosphate kinase 3441723..3442637 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239438.1 CDS STM14_3943 NC_016856.1 3443499 3444542 D Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3443499..3444542 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239439.1 CDS STM14_3944 NC_016856.1 3444653 3445426 D similar to Escherichia coli split galactitol utilization operon repressor (AAC75148.1); galactitol utilization operon transcriptional repressor 3444653..3445426 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239440.1 CDS yraL NC_016856.1 3445584 3446447 R putative methyltransferase complement(3445584..3446447) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239441.1 CDS yraM NC_016856.1 3446511 3448553 D similar to Escherichia coli putative glycosylase (AAC76181.1); putative transglycosylase 3446511..3448553 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239442.1 CDS yraN NC_016856.1 3448511 3448906 D hypothetical protein 3448511..3448906 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239443.1 CDS yraO NC_016856.1 3448928 3449518 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3448928..3449518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239444.1 CDS yraP NC_016856.1 3449528 3450103 D similar to Escherichia coli putative periplasmic protein (AAC76184.1); hypothetical protein 3449528..3450103 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239445.1 CDS yraR NC_016856.1 3450170 3450838 R putative nucleoside-diphosphate-sugar epimerase complement(3450170..3450838) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239446.1 CDS yhbO NC_016856.1 3450936 3451454 D putative intracellular proteinase 3450936..3451454 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239447.1 CDS yhbP NC_016856.1 3451434 3451877 R hypothetical protein complement(3451434..3451877) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239448.1 CDS yhbQ NC_016856.1 3451915 3452232 D GIY-YIG nuclease superfamily protein 3451915..3452232 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239449.1 CDS yhbS NC_016856.1 3452219 3452722 R putative ABC superfamily membrane protein; putative transport protein complement(3452219..3452722) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239450.1 CDS yhbT NC_016856.1 3452716 3453240 R putative lipid carrier protein complement(3452716..3453240) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239451.1 CDS yhbU NC_016856.1 3453457 3454452 D similar to Escherichia coli putative collagenase (AAC76192.1); putative protease 3453457..3454452 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239452.1 CDS yhbV NC_016856.1 3454461 3455339 D putative protease 3454461..3455339 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239453.1 CDS yhbW NC_016856.1 3455517 3456524 D similar to Escherichia coli putative enzyme (AAC76194.1); hypothetical protein 3455517..3456524 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239454.1 CDS STM14_3959 NC_016856.1 3456502 3457221 R putative inner membrane protein complement(3456502..3457221) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239455.1 CDS STM14_3960 NC_016856.1 3457380 3457910 D putative cytoplasmic protein 3457380..3457910 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239456.1 CDS mtr NC_016856.1 3457971 3459215 R tryptophan transporter of high affinity; tryptophan permease complement(3457971..3459215) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239457.1 CDS deaD NC_016856.1 3459369 3461258 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD complement(3459369..3461258) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239458.1 CDS nlpI NC_016856.1 3461437 3462321 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3461437..3462321) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239459.1 CDS pnp NC_016856.1 3462431 3464566 R similar to Escherichia coli polynucleotide phosphorylase; cytidylate kinase activity (AAC76198.1); member of mRNA degradosome; polynucleotide phosphorylase/polyadenylase complement(3462431..3464566) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239460.1 CDS STM14_3965 NC_016856.1 3464611 3464718 R hypothetical protein complement(3464611..3464718) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239461.1 CDS rpsO NC_016856.1 3464808 3465077 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3464808..3465077) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239462.1 CDS truB NC_016856.1 3465228 3466172 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3465228..3466172) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239463.1 CDS rbfA NC_016856.1 3466172 3466573 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3466172..3466573) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239464.1 CDS infB NC_016856.1 3466794 3469472 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3466794..3469472) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239465.1 CDS nusA NC_016856.1 3469497 3470999 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3469497..3470999) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239466.1 CDS yhbC NC_016856.1 3471027 3471479 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3471027..3471479) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239467.1 CDS argG NC_016856.1 3472107 3473450 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3472107..3473450 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239468.1 CDS STM14_3974 NC_016856.1 3473536 3474600 R putative cytoplasmic protein complement(3473536..3474600) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239469.2 CDS secG NC_016856.1 3475036 3475368 R similar to Escherichia coli protein export; membrane protein (AAC76207.1); IISP family; auxillary membrane component; preprotein translocase subunit SecG complement(3475036..3475368) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239470.1 CDS glmM NC_016856.1 3475591 3476928 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3475591..3476928) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239471.1 CDS folP NC_016856.1 3476921 3477769 R catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; dihydropteroate synthase complement(3476921..3477769) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239472.1 CDS tnpA_9 NC_016856.1 3477916 3478374 R transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase complement(3477916..3478374) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239473.1 CDS STM14_3980 NC_016856.1 3478331 3478519 R hypothetical protein complement(3478331..3478519) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239474.1 CDS hflB NC_016856.1 3478585 3480519 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease complement(3478585..3480519) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239475.1 CDS rrmJ NC_016856.1 3480623 3481249 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J complement(3480623..3481249) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239476.1 CDS yhbY NC_016856.1 3481376 3481669 D RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3481376..3481669 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239477.1 CDS greA NC_016856.1 3481825 3482301 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(3481825..3482301) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239478.1 CDS STM14_3985 NC_016856.1 3482355 3482456 R hypothetical protein complement(3482355..3482456) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239479.1 CDS dacB NC_016856.1 3482549 3483982 D penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 3482549..3483982 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239480.1 CDS STM14_3987 NC_016856.1 3483983 3484117 D hypothetical protein 3483983..3484117 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239481.1 CDS obgE NC_016856.1 3484114 3485286 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3484114..3485286) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239482.1 CDS rpmA NC_016856.1 3486397 3486654 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3486397..3486654) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239483.1 CDS rplU NC_016856.1 3486674 3486985 R similar to Escherichia coli 50S ribosomal subunit protein L21 (AAC76218.1); 50S ribosomal protein L21 complement(3486674..3486985) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239484.1 CDS ispB NC_016856.1 3487069 3488214 D similar to Escherichia coli octaprenyl diphosphate synthase (AAC76219.1); octaprenyl diphosphate synthase 3487069..3488214 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239485.1 CDS nlp NC_016856.1 3488446 3488733 D activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3488446..3488733 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239486.1 CDS murA NC_016856.1 3488791 3490050 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3488791..3490050) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239487.1 CDS yrbA NC_016856.1 3490104 3490397 R BolA family; putative transcriptional regulator complement(3490104..3490397) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239488.1 CDS STM14_3996 NC_016856.1 3490436 3490546 R hypothetical protein complement(3490436..3490546) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239489.1 CDS yrbB NC_016856.1 3490546 3490842 R putative STAS domain; hypothetical protein complement(3490546..3490842) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239490.1 CDS yrbC NC_016856.1 3490842 3491477 R putative ABC superfamily; putative transport protein complement(3490842..3491477) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239491.1 CDS yrbD NC_016856.1 3491496 3492047 R putative ABC superfamily binding protein; putative transport protein complement(3491496..3492047) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239492.1 CDS yrbE NC_016856.1 3492052 3492834 R putative ABC superfamily membrane protein; putative transport protein complement(3492052..3492834) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239493.1 CDS yrbF NC_016856.1 3492842 3493654 R ATP-binding subunit of a putative ABC toluene efflux transporter; putative ABC transporter ATP-binding protein YrbF complement(3492842..3493654) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239494.1 CDS yrbG NC_016856.1 3493867 3494844 D YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; putative calcium/sodium:proton antiporter 3493867..3494844 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239495.1 CDS yrbH NC_016856.1 3494858 3495844 D similar to Escherichia coli putative isomerase (AAC76229.1); polysialic acid capsule expression protein; D-arabinose 5-phosphate isomerase 3494858..3495844 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239496.1 CDS yrbI NC_016856.1 3495865 3496431 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3495865..3496431 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239497.1 CDS yrbK NC_016856.1 3496428 3497003 D hypothetical protein 3496428..3497003 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239498.1 CDS yhbN NC_016856.1 3496972 3497526 D LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; hypothetical protein 3496972..3497526 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239499.1 CDS yhbG NC_016856.1 3497533 3498258 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC76233.1); putative ABC superfamily ATP-binding protein; putative ABC transporter ATP-binding protein YhbG 3497533..3498258 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239500.1 CDS rpoN NC_016856.1 3498306 3499739 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3498306..3499739 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239501.1 CDS yhbH NC_016856.1 3499762 3500049 D YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; putative sigma(54) modulation protein 3499762..3500049 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239502.1 CDS ptsN NC_016856.1 3500167 3500658 D similar to Escherichia coli phosphotransferase system enzyme IIA; regulates N metabolism (AAC76236.1); sugar-specific enzyme IIA component of PTS 3500167..3500658 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239503.1 CDS yhbJ NC_016856.1 3500704 3501558 D putative kinase; contains putative P-loop; hypothetical protein 3500704..3501558 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239504.1 CDS ptsO NC_016856.1 3501555 3501827 D similar to Escherichia coli phosphocarrier protein HPr-like NPr; nitrogen-related; exchanges phosphate with Enzyme I Hpr (AAC76238.1); phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3501555..3501827 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239505.1 CDS yrbL NC_016856.1 3502076 3502708 D hypothetical protein 3502076..3502708 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239506.1 CDS mtgA NC_016856.1 3502783 3503511 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(3502783..3503511) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239507.1 CDS yhbL NC_016856.1 3503508 3504161 R similar to Escherichia coli sigma cross-reacting protein 27A (AAC76241.1); SCRP-27A; isoprenoid biosynthesis protein complement(3503508..3504161) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239508.1 CDS arcB NC_016856.1 3504388 3506724 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB complement(3504388..3506724) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239509.1 CDS yhcC NC_016856.1 3506818 3507747 R putative FeS oxidoreductase complement(3506818..3507747) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239510.1 CDS STM14_4018 NC_016856.1 3508092 3508241 R hypothetical protein complement(3508092..3508241) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239511.1 CDS STM14_4019 NC_016856.1 3508281 3508475 R hypothetical protein complement(3508281..3508475) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239512.1 CDS gltB NC_016856.1 3508419 3512879 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3508419..3512879 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239513.1 CDS gltD NC_016856.1 3512889 3514307 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3512889..3514307 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239514.1 CDS yhcG NC_016856.1 3514514 3515617 D putative cytoplasmic protein 3514514..3515617 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239515.1 CDS STM14_4023 NC_016856.1 3515633 3515794 D hypothetical protein 3515633..3515794 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239516.1 CDS codB NC_016856.1 3515734 3516987 D similar to Escherichia coli cytosine permease/transport (AAC73439.1); cytosine permease 3515734..3516987 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239517.1 CDS STM14_4025 NC_016856.1 3516974 3518254 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3516974..3518254 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239518.1 CDS yhcH NC_016856.1 3518337 3518804 R putative cytoplasmic protein complement(3518337..3518804) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239519.1 CDS nanK NC_016856.1 3518801 3519676 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase complement(3518801..3519676) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239520.1 CDS nanE NC_016856.1 3519673 3520362 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(3519673..3520362) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239521.1 CDS nanT NC_016856.1 3520409 3521899 R similar to Escherichia coli sialic acid transporter (AAC76256.1); MFS family; putative sialic acid transporter complement(3520409..3521899) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239522.1 CDS nanA NC_016856.1 3522015 3522908 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(3522015..3522908) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239523.1 CDS yhcK NC_016856.1 3523043 3523834 R Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR complement(3523043..3523834) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239524.1 CDS sspB NC_016856.1 3523943 3524443 R similar to Escherichia coli stringent starvation protein B (AAC76260.1); ClpXP protease specificity-enhancing factor complement(3523943..3524443) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239525.1 CDS sspA NC_016856.1 3524449 3525087 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3524449..3525087) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239526.1 CDS STM14_4034 NC_016856.1 3525086 3525205 D hypothetical protein 3525086..3525205 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239527.1 CDS STM14_4035 NC_016856.1 3525350 3526102 R putative cytoplasmic protein complement(3525350..3526102) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239528.1 CDS rpsI NC_016856.1 3526302 3526694 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3526302..3526694) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239529.1 CDS rplM NC_016856.1 3526710 3527138 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3526710..3527138) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239530.1 CDS yhcM NC_016856.1 3527441 3528565 R putative ATPase complement(3527441..3528565) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239531.1 CDS yhcB NC_016856.1 3528752 3529156 D cytochrome d ubiquinol oxidase subunit III 3528752..3529156 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239532.1 CDS degQ NC_016856.1 3529313 3530680 D similar to Escherichia coli serine endoprotease (AAC76266.1); serine endoprotease 3529313..3530680 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239533.1 CDS degS NC_016856.1 3530773 3531843 D similar to Escherichia coli protease (AAC76267.1); serine endoprotease 3530773..3531843 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239534.1 CDS STM14_4042 NC_016856.1 3531877 3532608 R similar to STM0063; putative inner membrane protein complement(3531877..3532608) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239535.1 CDS oadB NC_016856.1 3532628 3533929 R oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); putative sodium ion pump oxaloacetate decarboxylase beta chain complement(3532628..3533929) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239536.1 CDS oadA NC_016856.1 3533945 3535720 R catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B complement(3533945..3535720) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239537.1 CDS oadG NC_016856.1 3535736 3535990 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(3535736..3535990) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239538.1 CDS STM14_4046 NC_016856.1 3536146 3536763 R Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta complement(3536146..3536763) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239539.1 CDS STM14_4047 NC_016856.1 3536763 3537662 R Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha complement(3536763..3537662) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239540.1 CDS STM14_4048 NC_016856.1 3537695 3538963 R similar to Escherichia coli putative transport protein (AAC75352.1); putative cation transporter complement(3537695..3538963) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239541.1 CDS STM14_4049 NC_016856.1 3539174 3539839 R GntR family; putative regulatory protein complement(3539174..3539839) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239542.1 CDS STM14_4050 NC_016856.1 3539826 3540455 R GntR family; putative regulatory protein complement(3539826..3540455) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239543.1 CDS STM14_4051 NC_016856.1 3540466 3540597 R malate dehydrogenase complement(3540466..3540597) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239544.1 CDS mdh NC_016856.1 3540575 3541513 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(3540575..3541513) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239545.1 CDS STM14_4053 NC_016856.1 3541795 3541923 D hypothetical protein 3541795..3541923 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239546.1 CDS argR NC_016856.1 3541927 3542397 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3541927..3542397 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239547.1 CDS yhcN NC_016856.1 3542762 3543025 D putative outer membrane protein 3542762..3543025 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239548.1 CDS STM14_4056 NC_016856.1 3543129 3543395 D hypothetical protein 3543129..3543395 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239549.1 CDS yhcO NC_016856.1 3543455 3543727 R putative cytoplasmic protein complement(3543455..3543727) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239550.1 CDS yhcP NC_016856.1 3543899 3545866 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB complement(3543899..3545866) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239551.1 CDS yhcQ NC_016856.1 3545872 3546804 R with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA complement(3545872..3546804) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239552.1 CDS yhcR NC_016856.1 3546812 3547015 R membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein complement(3546812..3547015) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239553.1 CDS yhcS NC_016856.1 3547197 3548126 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76275.1); LysR family; putative DNA-binding transcriptional regulator 3547197..3548126 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239554.1 CDS tldD NC_016856.1 3548249 3549694 R responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD complement(3548249..3549694) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239555.1 CDS yhdP NC_016856.1 3549839 3553639 R hypothetical protein complement(3549839..3553639) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239556.1 CDS cafA NC_016856.1 3553746 3555215 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(3553746..3555215) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239557.1 CDS maf_2 NC_016856.1 3555205 3555798 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(3555205..3555798) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239558.1 CDS mreD NC_016856.1 3555807 3556298 R part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD complement(3555807..3556298) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239559.1 CDS mreC NC_016856.1 3556298 3557350 R similar to Escherichia coli rod shape-determining protein (AAC76282.1); cell wall structural complex MreBCD transmembrane component MreC complement(3556298..3557350) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239560.1 CDS mreB NC_016856.1 3557415 3558458 R similar to Escherichia coli regulator of ftsI; penicillin binding protein 3; septation function (AAC76283.1); HSP70 class molecular chaperones involved in cell morphogenesis; rod shape-determining protein complement(3557415..3558458) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239561.1 CDS STM14_4069 NC_016856.1 3558566 3558757 D hypothetical protein 3558566..3558757 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239562.1 CDS yhdA NC_016856.1 3558766 3560706 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(3558766..3560706) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239563.1 CDS yhdH NC_016856.1 3560910 3561884 D similar to Escherichia coli putative dehydrogenase (AAC76285.1); putative oxidoreductase 3560910..3561884 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239564.1 CDS STM14_4072 NC_016856.1 3561997 3563001 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 3561997..3563001 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239565.1 CDS STM14_4073 NC_016856.1 3563002 3563601 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 3563002..3563601 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239566.1 CDS STM14_4074 NC_016856.1 3563669 3563851 R hypothetical protein complement(3563669..3563851) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239567.1 CDS STM14_4075 NC_016856.1 3563867 3563971 D hypothetical protein 3563867..3563971 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239568.1 CDS accB NC_016856.1 3563994 3564464 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3563994..3564464 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239569.1 CDS accC NC_016856.1 3564475 3565824 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3564475..3565824 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239570.1 CDS yhdT NC_016856.1 3565933 3566175 D hypothetical protein 3565933..3566175 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239571.1 CDS panF NC_016856.1 3566165 3567616 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3566165..3567616 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239572.1 CDS prmA NC_016856.1 3567628 3568509 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3567628..3568509 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239573.1 CDS STM14_4081 NC_016856.1 3568595 3568738 R hypothetical protein complement(3568595..3568738) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239574.1 CDS yhdG NC_016856.1 3569170 3570135 D putative TIM-barrel enzyme; hypothetical 35.9 kDa protein in pmrA-fis intergenic region (SW:YHDG_SALTY); tRNA-dihydrouridine synthase B 3569170..3570135 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239575.1 CDS fis NC_016856.1 3570161 3570457 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3570161..3570457 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239576.1 CDS yhdJ NC_016856.1 3570543 3571427 D similar to Escherichia coli putative methyltransferase (AAC76294.1); putative methyltransferase 3570543..3571427 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239577.1 CDS yhdU NC_016856.1 3571510 3571674 D hypothetical protein 3571510..3571674 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239578.1 CDS STM14_4086 NC_016856.1 3571825 3573924 D membrane domain involved in; diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; putative signal transduction protein 3571825..3573924 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239579.1 CDS envR NC_016856.1 3573927 3574589 R similar to Escherichia coli putative transcriptional regulator (AAC76296.1); regulator for envCD; acrEF; TetR/AcrR family; DNA-binding transcriptional regulator EnvR complement(3573927..3574589) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239580.1 CDS STM14_4088 NC_016856.1 3574592 3574753 R hypothetical protein complement(3574592..3574753) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239581.1 CDS STM14_4089 NC_016856.1 3574662 3574820 D hypothetical protein 3574662..3574820 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239582.1 CDS acrE NC_016856.1 3575003 3576160 D similar to Escherichia coli transmembrane protein affects septum formation and cell membrane permeability (AAC76297.1); acriflavine resistance protein E 3575003..3576160 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239583.1 CDS acrF NC_016856.1 3576172 3579285 D similar to Escherichia coli integral transmembrane protein; acridine resistance protein F (AAC76298.1); RND family; multidrug transport protein 3576172..3579285 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239584.1 CDS yhdV NC_016856.1 3579521 3579742 D putative outer membrane lipoprotein 3579521..3579742 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239585.1 CDS STM14_4093 NC_016856.1 3579746 3579922 D hypothetical protein 3579746..3579922 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239586.1 CDS STM14_4094 NC_016856.1 3580182 3580316 R hypothetical protein complement(3580182..3580316) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239587.1 CDS STM14_4095 NC_016856.1 3580370 3580480 D hypothetical protein 3580370..3580480 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239588.1 CDS STM14_4101 NC_016856.1 3586043 3586165 D hypothetical protein 3586043..3586165 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239589.1 CDS yrdA NC_016856.1 3586340 3586894 D similar to Escherichia coli putative transferase (AAC76304.1); putative ferripyochelin-binding protein 3586340..3586894 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239590.1 CDS yrdB NC_016856.1 3586870 3587127 R hypothetical protein complement(3586870..3587127) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239591.1 CDS aroE_2 NC_016856.1 3587124 3587942 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(3587124..3587942) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239592.1 CDS yrdC NC_016856.1 3587947 3588519 R RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; putative ribosome maturation factor complement(3587947..3588519) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239593.1 CDS yrdD NC_016856.1 3588524 3589066 R similar to Escherichia coli putative DNA topoisomerase (AAC76308.1); putative DNA topoisomerase complement(3588524..3589066) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239594.1 CDS smg NC_016856.1 3589093 3589566 R hypothetical protein complement(3589093..3589566) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239595.1 CDS smf NC_016856.1 3589538 3590662 R similar to Escherichia coli orf; fragment 1 (AAC76311.1); putative protein involved in DNA uptake; hypothetical protein complement(3589538..3590662) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239596.1 CDS def NC_016856.1 3590794 3591303 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3590794..3591303 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239597.1 CDS fmt NC_016856.1 3591319 3592266 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3591319..3592266 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239598.1 CDS sun NC_016856.1 3592318 3593607 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase B 3592318..3593607 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239599.1 CDS trkA NC_016856.1 3593629 3595005 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3593629..3595005 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239600.1 CDS mscL NC_016856.1 3595147 3595560 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3595147..3595560 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239601.1 CDS STM14_4114 NC_016856.1 3595496 3595765 R putative cytoplasmic protein complement(3595496..3595765) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239602.1 CDS zntR NC_016856.1 3595823 3596248 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator complement(3595823..3596248) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239603.1 CDS yhdN NC_016856.1 3596259 3596627 R hypothetical protein complement(3596259..3596627) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239604.1 CDS rplQ NC_016856.1 3596735 3597118 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3596735..3597118) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239605.1 CDS rpoA NC_016856.1 3597159 3598148 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3597159..3598148) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239606.1 CDS rpsD NC_016856.1 3598174 3598794 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(3598174..3598794) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239607.1 CDS rpsK NC_016856.1 3598828 3599217 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(3598828..3599217) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239608.1 CDS rpsM NC_016856.1 3599234 3599590 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(3599234..3599590) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239609.1 CDS rpmJ_2 NC_016856.1 3599737 3599853 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(3599737..3599853) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239610.1 CDS secY NC_016856.1 3599885 3601216 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3599885..3601216) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239611.1 CDS rplO NC_016856.1 3601224 3601658 R late assembly protein; 50S ribosomal protein L15 complement(3601224..3601658) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239612.1 CDS rpmD NC_016856.1 3601662 3601841 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3601662..3601841) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239613.1 CDS rpsE NC_016856.1 3601845 3602348 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3601845..3602348) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239614.1 CDS rplR NC_016856.1 3602363 3602716 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3602363..3602716) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239615.1 CDS rplF NC_016856.1 3602726 3603259 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(3602726..3603259) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239616.1 CDS rpsH NC_016856.1 3603272 3603664 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3603272..3603664) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239617.1 CDS rpsN NC_016856.1 3603698 3603988 R similar to Escherichia coli 30S ribosomal subunit protein S14 (AAC76332.1); 30S ribosomal protein S14 complement(3603698..3603988) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239618.1 CDS rplE NC_016856.1 3604018 3604557 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3604018..3604557) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239619.1 CDS rplX NC_016856.1 3604572 3604886 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3604572..3604886) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239620.1 CDS rplN NC_016856.1 3604897 3605268 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3604897..3605268) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239621.1 CDS rpsQ NC_016856.1 3605432 3605686 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3605432..3605686) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239622.1 CDS rpmC NC_016856.1 3605686 3605877 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3605686..3605877) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239623.1 CDS rplP NC_016856.1 3605877 3606287 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3605877..3606287) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239624.1 CDS rpsC NC_016856.1 3606300 3607001 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3606300..3607001) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239625.1 CDS rplV NC_016856.1 3607019 3607351 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(3607019..3607351) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239626.1 CDS rpsS NC_016856.1 3607366 3607644 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3607366..3607644) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239627.1 CDS rplB NC_016856.1 3607661 3608482 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(3607661..3608482) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239628.1 CDS rplW NC_016856.1 3608500 3608802 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3608500..3608802) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239629.1 CDS rplD NC_016856.1 3608799 3609404 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3608799..3609404) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239630.1 CDS rplC NC_016856.1 3609415 3610044 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(3609415..3610044) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239631.1 CDS rpsJ NC_016856.1 3610077 3610388 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(3610077..3610388) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239632.1 CDS hopD NC_016856.1 3610642 3611235 D similar to Escherichia coli leader peptidase; integral membrane protein (AAC76360.1); leader peptidase HopD 3610642..3611235 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239633.1 CDS bfr NC_016856.1 3611232 3611708 R bacterioferritin; BFR; cytochrome B-1; cytochrome B-557 (SW:BFR_SALTY); iron storage homoprotein; bacterioferritin, iron storage and detoxification protein complement(3611232..3611708) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239634.1 CDS bfd NC_016856.1 3611781 3611975 R regulatory or redox component complexing with Bfr in iron storage and mobility (SW:BFD_SALTY); bacterioferritin-associated ferredoxin complement(3611781..3611975) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239635.1 CDS STM14_4148 NC_016856.1 3611988 3612179 R elongation factor Tu complement(3611988..3612179) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239636.1 CDS tuf_1 NC_016856.1 3612160 3613344 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3612160..3613344) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239637.1 CDS fusA NC_016856.1 3613416 3615530 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3613416..3615530) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239638.1 CDS rpsG NC_016856.1 3615627 3616097 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3615627..3616097) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239639.1 CDS rpsL NC_016856.1 3616193 3616567 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(3616193..3616567) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239640.1 CDS yheL NC_016856.1 3616693 3616980 R with TusACD and E is part of a sulfur transfer system which is required for synthesis of 2-thiouridine 5-methylaminomethyl-2-thiouridine at tRNA wobble positions; TusBCD acts as a sulfur mediator; tRNA 2-thiouridine synthesizing protein B complement(3616693..3616980) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239641.1 CDS yheM NC_016856.1 3616988 3617344 R hypothetical protein complement(3616988..3617344) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239642.1 CDS yheN NC_016856.1 3617344 3617730 R putative ACR involved in intracellular sulfur reduction; hypothetical protein complement(3617344..3617730) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239643.1 CDS yheO NC_016856.1 3617730 3618452 R putative regulatory protein complement(3617730..3618452) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239644.1 CDS fkpA NC_016856.1 3618729 3619547 R rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3618729..3619547) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239645.1 CDS slyX NC_016856.1 3619767 3619985 D similar to Escherichia coli host factor for lysis of phiX174 infection (AAC76373.1); hypothetical protein 3619767..3619985 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239646.1 CDS slyD NC_016856.1 3620173 3620763 R rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3620173..3620763) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239647.1 CDS yheV NC_016856.1 3620858 3621058 R putative cytoplasmic protein complement(3620858..3621058) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239648.1 CDS kefB NC_016856.1 3621069 3622874 R involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB complement(3621069..3622874) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239649.1 CDS yheR NC_016856.1 3622874 3623425 R required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG complement(3622874..3623425) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239650.1 CDS STM14_4163 NC_016856.1 3623551 3623655 D hypothetical protein 3623551..3623655 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239651.1 CDS yheS NC_016856.1 3623691 3625598 D similar to Escherichia coli putative ATP-binding component (AAC76377.1); contains duplicated ATPase domain; putative ABC transporter ATP-binding protein 3623691..3625598 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239652.1 CDS STM14_4166 NC_016856.1 3625984 3626295 R hypothetical protein complement(3625984..3626295) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239653.1 CDS STM14_4167 NC_016856.1 3626355 3626480 D hypothetical protein 3626355..3626480 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239654.1 CDS yheT NC_016856.1 3626493 3627560 D alpha/beta-hydrolase fold; putative hydrolase 3626493..3627560 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239655.1 CDS yheU NC_016856.1 3627557 3627775 D hypothetical protein 3627557..3627775 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239656.1 CDS prkB NC_016856.1 3627827 3628696 D similar to Escherichia coli probable phosphoribulokinase (AAC76380.1); putative phosphoribulokinase 3627827..3628696 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239657.1 CDS yhfA NC_016856.1 3628792 3629196 R hypothetical protein complement(3628792..3629196) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239658.1 CDS STM14_4172 NC_016856.1 3629162 3629344 D hypothetical protein 3629162..3629344 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239659.1 CDS crp NC_016856.1 3629504 3630136 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3629504..3630136 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239660.1 CDS yhfK NC_016856.1 3630185 3632272 D putative inner membrane protein 3630185..3632272 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239661.1 CDS argD_2 NC_016856.1 3632315 3633532 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(3632315..3633532) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239662.1 CDS pabA NC_016856.1 3633618 3634181 R aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II complement(3633618..3634181) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239663.1 CDS fic NC_016856.1 3634213 3634815 R cell filamentation protein Fic (SW:FIC_SALTY); stationary phase induced gene; affects cell division; cell filamentation protein Fic complement(3634213..3634815) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239664.1 CDS yhfG NC_016856.1 3634805 3634972 R hypothetical 6.8 kDa protein in fic-ppiA intergenic region (SW:YHFG_SALTY); hypothetical protein complement(3634805..3634972) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239665.1 CDS ppiA NC_016856.1 3635081 3635653 R peptidyl-prolyl cis-trans isomerase A (SW:PPIA_SALTY); rotamase A; peptidyl-prolyl cis-trans isomerase A complement(3635081..3635653) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239666.1 CDS STM14_4180 NC_016856.1 3635785 3635937 D hypothetical protein 3635785..3635937 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239667.1 CDS yhfC NC_016856.1 3635930 3637111 D similar to Escherichia coli putative transport (AAC76389.1); MFS family; hypothetical protein 3635930..3637111 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239668.1 CDS STM14_4182 NC_016856.1 3637245 3637421 R hypothetical protein complement(3637245..3637421) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239669.1 CDS nirB NC_016856.1 3637374 3639917 D similar to Escherichia coli nitrite reductase-NAD(P)H subunit (AAC76390.1); nitrite reductase large subunit 3637374..3639917 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239670.1 CDS nirD NC_016856.1 3639914 3640240 D involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 3639914..3640240 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239671.1 CDS STM14_4185 NC_016856.1 3640241 3640396 R hypothetical protein complement(3640241..3640396) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239672.1 CDS nirC NC_016856.1 3640506 3641315 D member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3640506..3641315 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239673.1 CDS cysG NC_016856.1 3641327 3642700 D multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; siroheme synthase 3641327..3642700 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239674.1 CDS bigA NC_016856.1 3643029 3648923 D putative surface-exposed virulence protein BigA (gi|5081595); putative surface-exposed virulence protein 3643029..3648923 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239675.1 CDS tnpA_10 NC_016856.1 3649055 3649513 R transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 complement(3649055..3649513) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239676.1 CDS STM14_4190 NC_016856.1 3649470 3649658 R hypothetical protein complement(3649470..3649658) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239677.1 CDS yhfL NC_016856.1 3649827 3649997 D putative outer membrane lipoprotein 3649827..3649997 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239678.1 CDS STM14_4192 NC_016856.1 3649991 3650131 R hypothetical protein complement(3649991..3650131) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239679.1 CDS trpS NC_016856.1 3650142 3651146 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(3650142..3651146) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239680.1 CDS gph NC_016856.1 3651139 3651897 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(3651139..3651897) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239681.1 CDS rpe NC_016856.1 3651890 3652567 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(3651890..3652567) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239682.1 CDS dam NC_016856.1 3652585 3653421 R DNA adenine methylase (SW:DMA_SALTY); DNA adenine methylase complement(3652585..3653421) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239683.1 CDS damX NC_016856.1 3653602 3654879 R similar to Escherichia coli putative membrane protein; overproduction may interfere with cell division (AAC76413.1); hypothetical protein complement(3653602..3654879) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239684.1 CDS aroB NC_016856.1 3654977 3656065 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(3654977..3656065) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239685.1 CDS aroK NC_016856.1 3656122 3656643 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(3656122..3656643) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239686.1 CDS hofQ NC_016856.1 3657108 3658346 R outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; outer membrane porin HofQ complement(3657108..3658346) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239687.1 CDS yrfA NC_016856.1 3658261 3658662 R putative inner membrane protein complement(3658261..3658662) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239688.1 CDS yrfB NC_016856.1 3658652 3659125 R putative inner membrane protein complement(3658652..3659125) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239689.1 CDS yrfC NC_016856.1 3659109 3659648 R putative inner membrane protein complement(3659109..3659648) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239690.1 CDS yrfD NC_016856.1 3659648 3660427 R hypothetical protein complement(3659648..3660427) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239691.1 CDS mrcA NC_016856.1 3660524 3663100 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3660524..3663100 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239692.1 CDS nudE NC_016856.1 3663196 3663759 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(3663196..3663759) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239693.1 CDS STM14_4207 NC_016856.1 3663870 3663983 R hypothetical protein complement(3663870..3663983) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239694.1 CDS yrfF NC_016856.1 3664082 3666214 D similar to Escherichia coli putative dehydrogenase (AAC76423.1); putative inner membrane protein 3664082..3666214 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239695.1 CDS yrfG NC_016856.1 3666279 3666947 D similar to Escherichia coli putative phosphatase (AAC76424.1); putative hydrolase 3666279..3666947 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239696.1 CDS yrfH NC_016856.1 3666958 3667359 D predicted small RNA-binding protein; ribosome-associated heat shock protein Hsp15 3666958..3667359 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239697.1 CDS hslO NC_016856.1 3667384 3668262 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 3667384..3668262 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239698.1 CDS yhgE NC_016856.1 3668372 3670081 R similar to Escherichia coli putative transport (AAC76427.1); putative inner membrane protein complement(3668372..3670081) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239699.1 CDS STM14_4213 NC_016856.1 3670273 3670407 R hypothetical protein complement(3670273..3670407) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239700.1 CDS STM14_4214 NC_016856.1 3670342 3670449 D hypothetical protein 3670342..3670449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239701.1 CDS pckA NC_016856.1 3670461 3672080 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3670461..3672080 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239702.1 CDS envZ NC_016856.1 3672155 3673507 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(3672155..3673507) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239703.1 CDS ompR NC_016856.1 3673504 3674223 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(3673504..3674223) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239704.1 CDS greB NC_016856.1 3674449 3674922 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3674449..3674922 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239705.1 CDS yhgF NC_016856.1 3675024 3677351 D putative RNase R 3675024..3677351 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239706.1 CDS STM14_4220 NC_016856.1 3677538 3677768 D hypothetical protein 3677538..3677768 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239707.1 CDS feoA NC_016856.1 3677788 3678015 D similar to Escherichia coli ferrous iron transport protein A (AAC76433.1); ferrous iron transport protein A 3677788..3678015 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239708.1 CDS feoB NC_016856.1 3678034 3680352 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3678034..3680352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239709.1 CDS yhgG NC_016856.1 3680365 3680601 D putative cytoplasmic protein 3680365..3680601 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239710.1 CDS STM14_4224 NC_016856.1 3680653 3680766 D hypothetical protein 3680653..3680766 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239711.1 CDS STM14_4225 NC_016856.1 3680836 3681750 D putative cytoplasmic protein 3680836..3681750 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239712.1 CDS bioH NC_016856.1 3681786 3682556 R Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH complement(3681786..3682556) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239713.1 CDS yhgH NC_016856.1 3682594 3683277 D involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3682594..3683277 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239714.1 CDS yhgI NC_016856.1 3683336 3683911 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 3683336..3683911 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239715.1 CDS STM14_4229 NC_016856.1 3684140 3684289 R hypothetical protein complement(3684140..3684289) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239716.1 CDS gntT NC_016856.1 3684288 3685604 D similar to Escherichia coli high-affinity transport of gluconate/gluconate permease (AAC76440.1); GntP family; GNT I system; high-affinity gluconate permease 3684288..3685604 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239717.1 CDS malQ NC_016856.1 3685723 3687801 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(3685723..3687801) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239718.1 CDS malP NC_016856.1 3687811 3690204 R similar to Escherichia coli maltodextrin phosphorylase (AAC76442.1); maltodextrin phosphorylase complement(3687811..3690204) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239719.1 CDS STM14_4233 NC_016856.1 3690393 3690500 R hypothetical protein complement(3690393..3690500) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239720.1 CDS malT NC_016856.1 3690798 3693503 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3690798..3693503 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239721.1 CDS STM14_4235 NC_016856.1 3693591 3693866 R putative cytoplasmic protein complement(3693591..3693866) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239722.1 CDS STM14_4236 NC_016856.1 3693869 3694129 R similar to Escherichia coli damage-inducible protein J (AAC73330.1); putative DNA-damage-inducibile protein complement(3693869..3694129) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239723.1 CDS rtcA NC_016856.1 3694238 3695257 R catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase complement(3694238..3695257) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239724.1 CDS rtcB NC_016856.1 3695261 3696478 R putative cytoplasmic protein complement(3695261..3696478) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239725.1 CDS STM14_4239 NC_016856.1 3696823 3698376 R putative ribonucleoprotein related-protein complement(3696823..3698376) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239726.1 CDS STM14_4240 NC_016856.1 3698369 3698491 R hypothetical protein complement(3698369..3698491) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239727.1 CDS rtcR NC_016856.1 3698566 3700149 D similar to Escherichia coli putative 2-component regulator (AAC76447.1); sigma N; sigma 54-dependent regulator of rtcBA expression; EBP family; sigma N 3698566..3700149 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239728.1 CDS glpR NC_016856.1 3700146 3700904 R represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR complement(3700146..3700904) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239729.1 CDS STM14_4243 NC_016856.1 3700901 3701017 R hypothetical protein complement(3700901..3701017) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239730.1 CDS glpG NC_016856.1 3700998 3701828 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG complement(3700998..3701828) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239731.1 CDS glpE NC_016856.1 3701904 3702230 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase complement(3701904..3702230) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239732.1 CDS glpD NC_016856.1 3702429 3703937 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3702429..3703937 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239733.1 CDS STM14_4247 NC_016856.1 3703984 3704529 R hypothetical protein complement(3703984..3704529) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239734.1 CDS STM14_4248 NC_016856.1 3704539 3706098 R putative periplasmic phosphate-binding protein complement(3704539..3706098) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239735.1 CDS gldA_1 NC_016856.1 3706192 3707301 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(3706192..3707301) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239736.1 CDS STM14_4251 NC_016856.1 3708970 3710685 D similar to Escherichia coli putative dehydratase (AAC73372.1); putative dihydroxyacid dehydratase 3708970..3710685 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239737.1 CDS STM14_4252 NC_016856.1 3710729 3711634 D similar to Escherichia coli putative lyase/synthase (AAC73371.1); dihydrodipicolinate synthase 3710729..3711634 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239738.1 CDS STM14_4253 NC_016856.1 3711678 3712433 R similar to Escherichia coli putative regulator (AAC75308.1); putative transcriptional regulator complement(3711678..3712433) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239739.1 CDS glgP NC_016856.1 3712611 3715058 R similar to Escherichia coli glycogen phosphorylase (AAC76453.1); glycogen phosphorylase complement(3712611..3715058) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239740.1 CDS glgA NC_016856.1 3715078 3716511 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(3715078..3716511) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239741.1 CDS glgC NC_016856.1 3716511 3717806 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3716511..3717806) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239742.1 CDS glgX NC_016856.1 3717821 3719797 R catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching protein complement(3717821..3719797) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239743.1 CDS glgB NC_016856.1 3719794 3721980 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(3719794..3721980) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239744.1 CDS STM14_4259 NC_016856.1 3722125 3722298 R hypothetical protein complement(3722125..3722298) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239745.1 CDS asd NC_016856.1 3722327 3723433 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(3722327..3723433) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239746.1 CDS STM14_4261 NC_016856.1 3723463 3723627 D hypothetical protein 3723463..3723627 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239747.1 CDS STM14_4263 NC_016856.1 3723698 3723940 D putative inner membrane protein 3723698..3723940 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239748.1 CDS gntU NC_016856.1 3723857 3725197 R similar to Escherichia coli low-affinity gluconate transport permease protein, interrupted (AAC76461.1); low affinity gluconate transporter complement(3723857..3725197) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239749.1 CDS gntK NC_016856.1 3725194 3725727 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase complement(3725194..3725727) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239750.1 CDS gntR NC_016856.1 3725866 3726861 R similar to Escherichia coli regulator of gluconate operon (AAC76463.1); gntUKR (GalR/LacI familiy; gluconate operon transcriptional repressor complement(3725866..3726861) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239751.1 CDS yhhW NC_016856.1 3726991 3727686 R putative cytoplasmic protein complement(3726991..3727686) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239752.1 CDS yhhX NC_016856.1 3727810 3728847 R similar to Escherichia coli putative regulator (AAC76465.1); putative dehydrogenase complement(3727810..3728847) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239753.1 CDS STM14_4269 NC_016856.1 3728906 3729031 D hypothetical protein 3728906..3729031 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239754.1 CDS STM14_4270 NC_016856.1 3729191 3729319 D hypothetical protein 3729191..3729319 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239755.1 CDS yhhY NC_016856.1 3729316 3729804 D YhhY; regulated by the fur regulator; unknown function; putative acetyltransferase YhhY 3729316..3729804 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239756.1 CDS STM14_4272 NC_016856.1 3730068 3731282 D ORF408 (gi|4456874); regulator of sugar metabolism; putative transcriptional regulator 3730068..3731282 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239757.1 CDS STM14_4273 NC_016856.1 3731298 3732059 D ORF 245 (gi|4456875); similar to STM1381; putative cytoplasmic protein 3731298..3732059 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239758.1 CDS STM14_4274 NC_016856.1 3732113 3733084 D putative inner membrane protein 3732113..3733084 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239759.1 CDS STM14_4275 NC_016856.1 3733081 3734115 D similar to Escherichia coli putative hydrolase (AAC76404.1); putative phosphotriesterase 3733081..3734115 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239760.1 CDS ggt NC_016856.1 3734160 3735902 R periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase periplasmic precursor complement(3734160..3735902) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239761.1 CDS STM14_4277 NC_016856.1 3735927 3736031 D hypothetical protein 3735927..3736031 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239762.1 CDS yhhA NC_016856.1 3736028 3736444 D hypothetical protein 3736028..3736444 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239763.1 CDS ugpQ NC_016856.1 3736457 3737197 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase complement(3736457..3737197) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239764.1 CDS ugpC NC_016856.1 3737194 3738264 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(3737194..3738264) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239765.1 CDS ugpE NC_016856.1 3738266 3739111 R with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein complement(3738266..3739111) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239766.1 CDS ugpA NC_016856.1 3739108 3739995 R with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease complement(3739108..3739995) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239767.1 CDS ugpB NC_016856.1 3740059 3741375 R with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein complement(3740059..3741375) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239768.1 CDS STM14_4284 NC_016856.1 3741634 3742002 R similar to death-on-curing protein of phage P1; death-on-curing protein complement(3741634..3742002) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239769.1 CDS yhhV NC_016856.1 3741999 3742226 R hypothetical protein in livF 5'region (SW:YHHV_SALTY); putative cytoplasmic protein complement(3741999..3742226) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239770.1 CDS livF NC_016856.1 3742352 3743065 R with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(3742352..3743065) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239771.1 CDS livG NC_016856.1 3743067 3743834 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(3743067..3743834) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239772.1 CDS livM NC_016856.1 3743831 3745108 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(3743831..3745108) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239773.1 CDS livH NC_016856.1 3745105 3746031 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH complement(3745105..3746031) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239774.1 CDS livK NC_016856.1 3746091 3747200 R leucine-specific binding protein precursor; LS-BP (SW:LIVK_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid transporter complement(3746091..3747200) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239775.1 CDS STM14_4291 NC_016856.1 3747318 3747434 R hypothetical protein complement(3747318..3747434) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239776.1 CDS yhhK NC_016856.1 3747622 3748005 D putative acetyltransferase 3747622..3748005 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239777.1 CDS STM14_4293 NC_016856.1 3747983 3748117 D putative cytoplasmic protein 3747983..3748117 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239778.1 CDS livJ NC_016856.1 3748200 3749297 R leu/ile/val/thr-binding protein precursor; LIVT-BP (SW:LIVJ_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid transporter complement(3748200..3749297) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239779.1 CDS rpoH NC_016856.1 3749625 3750479 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(3749625..3750479) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239780.1 CDS STM14_4296 NC_016856.1 3750462 3750605 D hypothetical protein 3750462..3750605 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239781.1 CDS ftsX NC_016856.1 3750725 3751780 R putative ABC transporter, membrane protein; cell division protein FtsX complement(3750725..3751780) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239782.1 CDS ftsE NC_016856.1 3751773 3752441 R putative ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE complement(3751773..3752441) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239783.1 CDS ftsY NC_016856.1 3752444 3753919 R signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY complement(3752444..3753919) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239784.1 CDS yhhF NC_016856.1 3754045 3754641 D catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3754045..3754641 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239785.1 CDS yhhL NC_016856.1 3754628 3754900 D hypothetical protein 3754628..3754900 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239786.1 CDS yhhM NC_016856.1 3754922 3755293 R similar to Escherichia coli putative receptor (AAC76492.1); putative inner membrane protein complement(3754922..3755293) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239787.1 CDS yhhN NC_016856.1 3755435 3756061 D similar to Escherichia coli putative enzyme (AAC76493.1); putative inner membrane protein 3755435..3756061 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239788.1 CDS zntA NC_016856.1 3756142 3758340 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 3756142..3758340 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239789.1 CDS tcp NC_016856.1 3758540 3760183 D methyl-accepting chemotaxis citrate transducer (citrate chemoreceptorprotein) (SW:MCPC_SALTY); methyl-accepting transmembrane citrate/phenol chemoreceptor 3758540..3760183 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239790.1 CDS yhhP NC_016856.1 3760207 3760452 R Deletion of this protein in E. coli causes cell filamentation, may be a modulator of cell division; cell developmental protein SirA complement(3760207..3760452) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239791.1 CDS yhhQ NC_016856.1 3760622 3761287 D hypothetical protein 3760622..3761287 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239792.1 CDS STM14_4308 NC_016856.1 3761360 3761917 D hypothetical protein 3761360..3761917 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239793.1 CDS yhhS NC_016856.1 3761921 3763138 R similar to Escherichia coli putative transport (AAC76498.1); MFS family; hypothetical protein complement(3761921..3763138) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239794.1 CDS yhhT NC_016856.1 3763270 3764319 D PerM family; putative permease 3763270..3764319 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239795.1 CDS acpT NC_016856.1 3764371 3764949 D holo-(acyl carrier protein) synthase 2 3764371..3764949 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239796.1 CDS nikR NC_016856.1 3765041 3765442 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3765041..3765442 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239797.1 CDS yhhJ NC_016856.1 3765532 3766656 R similar to Escherichia coli putative transporter (AAC76510.1); putative ABC superfamily; ATP-binding/membrane transport protein; putative ABC transport protein complement(3765532..3766656) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239798.1 CDS yhiH NC_016856.1 3766656 3769397 R similar to Escherichia coli putative ATP-binding component of a transport system; fragment 1 (AAC76511.1); permease component; putative ABC-type multidrug transport system ATPase component complement(3766656..3769397) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239799.1 CDS yhiI NC_016856.1 3769394 3770461 R similar to Escherichia coli putative membrane protein (AAC76512.1); hypothetical protein complement(3769394..3770461) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239800.1 CDS STM14_4316 NC_016856.1 3770553 3770684 D hypothetical protein 3770553..3770684 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239801.1 CDS yhiN NC_016856.1 3770767 3771963 R hypothetical protein complement(3770767..3771963) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239802.1 CDS pitA NC_016856.1 3772194 3773690 D similar to Escherichia coli low-affinity phosphate transport (AAC76518.1); PiT family; low-affinity phosphate transporter 3772194..3773690 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239803.1 CDS uspB NC_016856.1 3773830 3774165 R ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB complement(3773830..3774165) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239804.1 CDS uspA NC_016856.1 3774553 3774987 D similar to Escherichia coli universal stress protein; broad regulatory function (AAC76520.1); universal stress protein A 3774553..3774987 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239805.1 CDS yhiP NC_016856.1 3775312 3776784 D member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3775312..3776784 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239806.1 CDS yhiQ NC_016856.1 3776876 3777634 R predicted SAM-dependent methyltransferase; putative methyltransferase complement(3776876..3777634) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239807.1 CDS prlC NC_016856.1 3777641 3779683 R oligopeptidase A (SW:OPDA_SALTY); oligopeptidase A complement(3777641..3779683) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239808.1 CDS STM14_4324 NC_016856.1 3779865 3781136 R putative phosphatase complement(3779865..3781136) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239809.1 CDS STM14_4325 NC_016856.1 3781138 3781305 D hypothetical protein 3781138..3781305 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239810.1 CDS yhiR NC_016856.1 3781347 3782189 D putative cytoplasmic protein 3781347..3782189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239811.1 CDS gor NC_016856.1 3782294 3783646 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3782294..3783646 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239812.1 CDS STM14_4328 NC_016856.1 3783693 3784736 R similar to Escherichia coli periplasmic L-asparaginase II (AAC75994.1); putative L-asparaginase complement(3783693..3784736) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239813.1 CDS STM14_4329 NC_016856.1 3784795 3786114 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(3784795..3786114) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239814.1 CDS STM14_4330 NC_016856.1 3786168 3787013 R similar to Escherichia coli putative kinase (AAC76399.1); ribokinase family; putative sugar kinase complement(3786168..3787013) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239815.1 CDS STM14_4331 NC_016856.1 3787077 3788054 R similar to Escherichia coli putative transport protein (AAC76396.1); putative phosphosugar isomerase complement(3787077..3788054) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239816.1 CDS STM14_4332 NC_016856.1 3788230 3788949 R similar to Escherichia coli putative transcriptional regulator (AAC76400.1); GntR family; putative regulatory protein complement(3788230..3788949) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239817.1 CDS STM14_4333 NC_016856.1 3789092 3789217 D hypothetical protein 3789092..3789217 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239818.1 CDS treF NC_016856.1 3789275 3790924 D cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3789275..3790924 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239819.1 CDS STM14_4335 NC_016856.1 3790937 3792526 R putative inner membrane protein complement(3790937..3792526) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239820.1 CDS STM14_4336 NC_016856.1 3792675 3792815 R hypothetical protein complement(3792675..3792815) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239821.1 CDS STM14_4337 NC_016856.1 3792807 3793163 D putative phage endolysin 3792807..3793163 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239822.1 CDS yhjB NC_016856.1 3793169 3793771 R similar to Escherichia coli putative regulator (AAC76545.1); LuxR/UhpA family; putative transcriptional regulator complement(3793169..3793771) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239823.1 CDS STM14_4339 NC_016856.1 3794036 3794179 R hypothetical protein complement(3794036..3794179) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239824.1 CDS STM14_4340 NC_016856.1 3794140 3794265 D hypothetical protein 3794140..3794265 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239825.1 CDS yhjC NC_016856.1 3794402 3795301 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76546.1); LysR family; putative transcriptional regulator 3794402..3795301 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239826.1 CDS yhjD NC_016856.1 3795374 3796402 D putative tRNA-processing ribonuclease 3795374..3796402 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239827.1 CDS STM14_4343 NC_016856.1 3796527 3796667 D hypothetical protein 3796527..3796667 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239828.1 CDS yhjE NC_016856.1 3796753 3798075 D similar to Escherichia coli putative transport protein (AAC76548.1); MFS family; putative transport protein 3796753..3798075 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239829.1 CDS yhjG NC_016856.1 3798115 3800175 R putative inner membrane protein complement(3798115..3800175) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239830.1 CDS yhjH NC_016856.1 3800285 3801052 R in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein complement(3800285..3801052) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239831.1 CDS STM14_4347 NC_016856.1 3801111 3801227 R hypothetical protein complement(3801111..3801227) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239832.1 CDS kdgK NC_016856.1 3801281 3802210 D similar to Escherichia coli ketodeoxygluconokinase (AAC76551.1); ketodeoxygluconokinase 3801281..3802210 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239833.1 CDS yhjJ NC_016856.1 3802264 3803751 R protein YhjJ precursor (SW:YHJJ_SALTY); putative Zn-dependent peptidase complement(3802264..3803751) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239834.1 CDS STM14_4350 NC_016856.1 3803739 3803876 D hypothetical protein 3803739..3803876 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239835.1 CDS dctA NC_016856.1 3803971 3805257 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(3803971..3805257) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239836.1 CDS STM14_4352 NC_016856.1 3805315 3805461 R hypothetical protein complement(3805315..3805461) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239837.1 CDS yhjK NC_016856.1 3805415 3807388 R HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a putative phosphodiesterase protein from E. coli; putative phosphodiesterase complement(3805415..3807388) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239838.1 CDS STM14_4354 NC_016856.1 3807400 3807591 R hypothetical protein complement(3807400..3807591) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239839.1 CDS yhjL NC_016856.1 3807595 3811137 R cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC complement(3807595..3811137) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239840.1 CDS STM14_4356 NC_016856.1 3811119 3812228 R catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase complement(3811119..3812228) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239841.1 CDS yhjN NC_016856.1 3812232 3814532 R binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein complement(3812232..3814532) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239842.1 CDS bcsA NC_016856.1 3814543 3817167 R polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit complement(3814543..3817167) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239843.1 CDS yhjQ NC_016856.1 3817164 3817916 R cell division protein complement(3817164..3817916) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239844.1 CDS yhjR NC_016856.1 3817917 3818120 R putative cytoplasmic protein complement(3817917..3818120) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239845.1 CDS STM14_4361 NC_016856.1 3818231 3818344 D hypothetical protein 3818231..3818344 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239846.1 CDS yhjS NC_016856.1 3818365 3819936 D similar to Escherichia coli putative protease (AAC76561.1); putative cytoplasmic protein 3818365..3819936 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239847.1 CDS yhjT NC_016856.1 3819933 3820124 D putative inner membrane protein 3819933..3820124 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239848.1 CDS yhjU NC_016856.1 3820121 3821800 D putative inner membrane protein 3820121..3821800 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239852.1 CDS yhjV NC_016856.1 3822632 3823930 D similar to Escherichia coli putative transporter protein (AAC76564.1); HAAAP family; putative transport protein 3822632..3823930 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239853.1 CDS dppF NC_016856.1 3824031 3825044 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(3824031..3825044) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239854.1 CDS dppD NC_016856.1 3825041 3826024 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit complement(3825041..3826024) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239855.1 CDS dppC NC_016856.1 3826035 3826937 R similar to Escherichia coli dipeptide transport system permease protein 2 (AAC76567.1); ABC superfamily membrane protein; dipeptide transporter complement(3826035..3826937) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239856.1 CDS dppB NC_016856.1 3826947 3827966 R transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB complement(3826947..3827966) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239857.1 CDS STM14_4374 NC_016856.1 3827982 3828101 R hypothetical protein complement(3827982..3828101) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239858.1 CDS dppA NC_016856.1 3828123 3829730 R similar to Escherichia coli dipeptide transport protein (AAC76569.1); ABC superfamily periplasmic protein; dipeptide transport protein complement(3828123..3829730) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239859.1 CDS STM14_4376 NC_016856.1 3830286 3831611 R similar to Escherichia coli putative permease (AAC75926.1); putative xanthine permease complement(3830286..3831611) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239860.1 CDS STM14_4377 NC_016856.1 3831669 3832793 R contains putative PQQ enzyme repeat; hypothetical protein complement(3831669..3832793) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239861.1 CDS STM14_4378 NC_016856.1 3832781 3832954 R hypothetical protein complement(3832781..3832954) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239862.1 CDS STM14_4379 NC_016856.1 3832815 3832976 D hypothetical protein 3832815..3832976 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239863.1 CDS STM14_4380 NC_016856.1 3832943 3833950 D similar to Escherichia coli regulator for rbs operon (AAC76776.1); LacI family; putative regulatory protein 3832943..3833950 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239864.1 CDS yhjW NC_016856.1 3834277 3835968 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase complement(3834277..3835968) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239865.1 CDS lpfE NC_016856.1 3836186 3836713 R PFE protein precursor (SW:LPFE_SALTY); long polar fimbrial minor protein complement(3836186..3836713) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239866.1 CDS lpfC NC_016856.1 3837806 3840334 R outer membrane usher protein LpfC precursor (SW:LPFC_SALTY); long polar fimbrial outer membrane usher protein complement(3837806..3840334) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239867.1 CDS lpfB NC_016856.1 3840357 3841055 R chaperone protein LpfB precursor (SW:LPFB_SALTY); long polar fimbrial chaperone precursor complement(3840357..3841055) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239868.1 CDS lpfA NC_016856.1 3841140 3841676 R long polar fimbrial protein A precursor (SW:LPFA_SALTY); long polar fimbrial protein A precursor complement(3841140..3841676) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239869.1 CDS STM14_4388 NC_016856.1 3842019 3842180 D hypothetical protein 3842019..3842180 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239870.1 CDS yhjY NC_016856.1 3842182 3842886 R similar to Escherichia coli putative lipase (AAC76572.1); putative lipase complement(3842182..3842886) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239871.1 CDS tag NC_016856.1 3843043 3843624 D constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyladenine DNA glycosylase 3843043..3843624 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239872.1 CDS yiaC NC_016856.1 3843602 3844042 D hypothetical protein 3843602..3844042 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239873.1 CDS bisC NC_016856.1 3844011 3846344 R similar to Escherichia coli biotin sulfoxide reductase (AAC76575.1); biotin sulfoxide reductase complement(3844011..3846344) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239874.1 CDS STM14_4393 NC_016856.1 3846344 3846445 D hypothetical protein 3846344..3846445 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239875.1 CDS yiaD NC_016856.1 3846497 3847159 D similar to Escherichia coli putative outer membrane protein (AAC76576.1); putative outer membrane lipoprotein 3846497..3847159 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239876.1 CDS STM14_4395 NC_016856.1 3847245 3847379 R hypothetical protein complement(3847245..3847379) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239877.1 CDS yiaE NC_016856.1 3847378 3848352 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 3847378..3848352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239878.1 CDS yiaF NC_016856.1 3848402 3849112 R putative outer membrane lipoprotein complement(3848402..3849112) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239879.1 CDS yiaG NC_016856.1 3849551 3849841 D putative transcriptional regulator 3849551..3849841 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239880.1 CDS cspA NC_016856.1 3850130 3850342 D cold shock protein CspA (SW:CSPA_SALTY); 7.4 kDa; transcriptional activator of hns; major cold shock protein 3850130..3850342 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239881.1 CDS STM14_4400 NC_016856.1 3850516 3851055 D hypothetical protein 3850516..3851055 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239882.1 CDS STM14_4401 NC_016856.1 3851427 3851912 R putative acetyltransferase complement(3851427..3851912) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239883.1 CDS STM14_4402 NC_016856.1 3851900 3852187 R putative cytoplasmic protein complement(3851900..3852187) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239884.1 CDS STM14_4403 NC_016856.1 3852193 3852324 R hypothetical protein complement(3852193..3852324) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239885.1 CDS STM14_4404 NC_016856.1 3852365 3852832 R putative acetyltransferase complement(3852365..3852832) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239886.1 CDS glyS NC_016856.1 3853461 3855530 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(3853461..3855530) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239887.1 CDS glyQ NC_016856.1 3855540 3856451 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(3855540..3856451) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239888.1 CDS STM14_4408 NC_016856.1 3856473 3856610 D hypothetical protein 3856473..3856610 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239889.1 CDS STM14_4409 NC_016856.1 3856590 3856892 R putative outer membrane lipoprotein complement(3856590..3856892) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239890.1 CDS STM14_4410 NC_016856.1 3856798 3857019 R hypothetical protein complement(3856798..3857019) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239891.1 CDS yiaH NC_016856.1 3857058 3858053 D putative inner membrane protein 3857058..3858053 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239892.1 CDS yiaB NC_016856.1 3858076 3858429 R putative inner membrane protein complement(3858076..3858429) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239893.1 CDS xylB NC_016856.1 3858604 3860058 R similar to Escherichia coli xylulokinase (AAC76588.1); xylulokinase complement(3858604..3860058) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239894.1 CDS xylA NC_016856.1 3860158 3861480 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(3860158..3861480) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239895.1 CDS STM14_4415 NC_016856.1 3861460 3861693 D hypothetical protein 3861460..3861693 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239896.1 CDS STM14_4416 NC_016856.1 3861562 3861738 R hypothetical protein complement(3861562..3861738) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239897.1 CDS xylR NC_016856.1 3861843 3863021 D similar to Escherichia coli putative regulator of xyl operon (AAC76593.1); AraC/XylS family; xylose operon regulatory protein 3861843..3863021 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239898.1 CDS bax NC_016856.1 3863082 3863906 R similar to Escherichia coli putative ATP-binding protein (AAC76594.1); hypothetical protein complement(3863082..3863906) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239899.1 CDS STM14_4419 NC_016856.1 3863890 3864222 D hypothetical protein 3863890..3864222 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239900.1 CDS malS NC_016856.1 3864222 3866249 D periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase 3864222..3866249 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239901.1 CDS avtA NC_016856.1 3866423 3867673 D transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3866423..3867673 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239902.1 CDS ysaA NC_016856.1 3867710 3868183 R putative oxidoreductase complement(3867710..3868183) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239903.1 CDS yiaJ NC_016856.1 3868300 3869100 R similar to Escherichia coli putative regulator (AAC76598.1); IclR family; transcriptional repressor complement(3868300..3869100) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239904.1 CDS STM14_4424 NC_016856.1 3869165 3869311 R hypothetical protein complement(3869165..3869311) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239905.1 CDS yiaK NC_016856.1 3869330 3870328 D NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 3869330..3870328 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239906.1 CDS yiaL NC_016856.1 3870340 3870804 D similar to Escherichia coli putative lipase (AAC76600.1); putative cytoplasmic protein 3870340..3870804 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239907.1 CDS STM14_4427 NC_016856.1 3870828 3871760 D similar to CheA; putative chemotaxis protein 3870828..3871760 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239908.1 CDS yiaM NC_016856.1 3871899 3872372 D membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; 2,3-diketo-L-gulonate TRAP transporter small permease 3871899..3872372 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239909.1 CDS yiaN NC_016856.1 3872375 3873652 D similar to Escherichia coli putative membrane protein (AAC76602.1); DedA family; hypothetical protein 3872375..3873652 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239910.1 CDS yiaO NC_016856.1 3873664 3874650 D similar to Escherichia coli putative solute-binding transport protein (AAC76603.1); putative periplasmic dicarboxylate-binding protein 3873664..3874650 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239911.1 CDS lyxK NC_016856.1 3874654 3876150 D similar to Escherichia coli L-xylulose kinase (AAC76604.1); cryptic; L-xylulose kinase 3874654..3876150 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239912.1 CDS sgbH NC_016856.1 3876147 3876809 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3876147..3876809 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239913.1 CDS sgbU NC_016856.1 3876802 3877662 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase 3876802..3877662 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239914.1 CDS sgbE NC_016856.1 3877656 3878351 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3877656..3878351 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239915.1 CDS STM14_4435 NC_016856.1 3878512 3879327 R similar to Escherichia coli putative AraC-type regulatory protein (AAC76936.1); AraC family; helix-turn-helix; putative regulatory protein complement(3878512..3879327) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239916.1 CDS STM14_4436 NC_016856.1 3879591 3881546 D putative cytoplasmic protein 3879591..3881546 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239917.1 CDS STM14_4437 NC_016856.1 3881551 3881694 D hypothetical protein 3881551..3881694 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239918.1 CDS aldB NC_016856.1 3881664 3883202 R similar to Escherichia coli aldehyde dehydrogenase B; lactaldehyde dehydrogenase (AAC76612.1); aldehyde dehydrogenase B complement(3881664..3883202) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239919.1 CDS STM14_4439 NC_016856.1 3883371 3884252 D similar to Escherichia coli possible NagC-like transcriptional regulator (AAC73497.1); putative transcriptional regulator 3883371..3884252 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239920.1 CDS selB NC_016856.1 3884537 3886387 R similar to Escherichia coli selenocysteinyl-tRNA-specific translation factor (AAC76614.1); selenocysteinyl-tRNA-specific translation factor complement(3884537..3886387) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239921.1 CDS selA NC_016856.1 3886384 3887775 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(3886384..3887775) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239922.1 CDS yibF NC_016856.1 3887874 3888482 R similar to Escherichia coli putative S-transferase (AAC76616.1); glutathione S-transferase complement(3887874..3888482) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239923.1 CDS mtlA NC_016856.1 3888958 3890874 D similar to Escherichia coli PTS system; mannitol-specific enzyme IIABC components (AAC76623.1); PTS family; mannitol-specific enzyme IIABC component 3888958..3890874 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239924.1 CDS mtlD NC_016856.1 3891080 3892243 D similar to Escherichia coli mannitol-1-phosphate dehydrogenase (AAC76624.1); mannitol-1-phosphate 5-dehydrogenase 3891080..3892243 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239925.1 CDS mtlR NC_016856.1 3892240 3892830 D Acts as a repressor of the mtlAD operon; mannitol repressor protein 3892240..3892830 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239926.1 CDS STM14_4446 NC_016856.1 3892840 3893049 R putative cytoplasmic protein complement(3892840..3893049) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239927.1 CDS yibL NC_016856.1 3893340 3893702 D hypothetical protein 3893340..3893702 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239928.1 CDS STM14_4448 NC_016856.1 3893735 3893932 D hypothetical protein 3893735..3893932 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239929.1 CDS STM14_4449 NC_016856.1 3894193 3894876 D putative inner membrane lipoprotein 3894193..3894876 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239930.1 CDS STM14_4450 NC_016856.1 3894920 3899305 D similar to Escherichia coli putative membrane protein (AAC74454.1); putative inner membrane protein 3894920..3899305 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239931.1 CDS lldP NC_016856.1 3899604 3901259 D similar to Escherichia coli L-lactate permease (AAC76627.1); L-lactate permease 3899604..3901259 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239932.1 CDS lldR NC_016856.1 3901256 3902032 D represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3901256..3902032 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239933.1 CDS lldD NC_016856.1 3902029 3903219 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3902029..3903219 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239934.1 CDS yibK NC_016856.1 3903283 3903756 D member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; putative tRNA/rRNA methyltransferase YibK 3903283..3903756 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239935.1 CDS STM14_4455 NC_016856.1 3903824 3904828 R similar to Escherichia coli L-idonate transcriptional regulator (AAC77221.1); putative transcriptional regulator complement(3903824..3904828) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239936.1 CDS STM14_4456 NC_016856.1 3904878 3905129 D hypothetical protein 3904878..3905129 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239937.1 CDS STM14_4457 NC_016856.1 3905147 3906343 D similar to Escherichia coli starvation-sensing protein (AAC74653.1); muconate lactonizing enzyme family; putative mandelate racemase 3905147..3906343 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239938.1 CDS STM14_4458 NC_016856.1 3906417 3907727 D similar to Escherichia coli putative transport protein (AAC75831.1); putative permease 3906417..3907727 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239939.1 CDS cysE NC_016856.1 3907810 3908631 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(3907810..3908631) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239940.1 CDS gpsA NC_016856.1 3908709 3909728 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3908709..3909728) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239941.1 CDS secB NC_016856.1 3909728 3910195 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(3909728..3910195) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239942.1 CDS grxC NC_016856.1 3910239 3910490 R similar to Escherichia coli glutaredoxin 3 (AAC76634.1); glutaredoxin 3 complement(3910239..3910490) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239943.1 CDS yibN NC_016856.1 3910577 3911008 R putative rhodanese-like sulfurtransferase complement(3910577..3911008) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239944.1 CDS pmgI NC_016856.1 3911256 3912800 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3911256..3912800 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239945.1 CDS yibP NC_016856.1 3912810 3914093 D similar to Escherichia coli putative membrane protein (AAC76637.1); hypothetical protein 3912810..3914093 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239946.1 CDS yigQ NC_016856.1 3914097 3915059 D hypothetical protein 3914097..3915059 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239947.1 CDS yibD NC_016856.1 3915046 3916080 R similar to Escherichia coli putative regulator (AAC76639.1); glycosyl transferase family protein complement(3915046..3916080) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239948.1 CDS STM14_4468 NC_016856.1 3916321 3916461 R putative inner membrane protein complement(3916321..3916461) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239949.1 CDS tdh NC_016856.1 3916574 3917599 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(3916574..3917599) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239950.1 CDS kbl NC_016856.1 3917609 3918805 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(3917609..3918805) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239951.1 CDS rfaD NC_016856.1 3919008 3919940 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3919008..3919940 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239952.1 CDS rfaF NC_016856.1 3919943 3920989 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3919943..3920989 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239953.1 CDS rfaC NC_016856.1 3920989 3921942 D lipopolysaccharide heptosyltransferase-1 (SW:RFAC_SALTY); ADP-heptose--LPS heptosyltransferase 3920989..3921942 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239954.1 CDS rfaL NC_016856.1 3921982 3923196 D O-antigen ligase (SW:RFAL_SALTY); O-antigen ligase 3921982..3923196 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239955.1 CDS rfaK NC_016856.1 3923253 3924398 R lipopolysaccharide 1,2-N-acetylglucosaminetransferase (SW:RFAK_SALTY); lipopolysaccharide core biosynthetic protein; putative hexose transferase complement(3923253..3924398) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239956.1 CDS rfaZ NC_016856.1 3924499 3925308 R lipopolysaccharide core biosynthetic protein RfaZ (SW:RFAZ_SALTY); lipopolysaccharide core biosynthesis protein complement(3924499..3925308) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239957.1 CDS rfaY NC_016856.1 3925458 3926156 R lipopolysaccharide core biosynthesis protein RfaY (SW:RFAY_SALTY); modification of heptose region of the core; lipopolysaccharide core biosynthesis protein complement(3925458..3926156) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239958.1 CDS rfaJ NC_016856.1 3926179 3927189 R UDP-D-glucose/galactosyl; lipopolysaccharide 1,2-glucosyltransferase (SW:RFAJ_SALTY); lipopolysaccharide glucosyltransferase complement(3926179..3927189) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239959.1 CDS rfaI NC_016856.1 3927207 3928220 R UDP-D-galactose/glucosyl; lipopolysaccharide 1,3-galactosyltransferase (SW:RFAI_SALTY); lipopolysaccharide-alpha-1, 3-D-galactosyltransferase complement(3927207..3928220) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239960.1 CDS rfaB NC_016856.1 3928226 3929305 R UDP-D-galactose/(glucosyl; lipopolysaccharide 1,6-galactosyltransferase (SW:RFAB_SALTY); UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(3928226..3929305) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239961.1 CDS yibR NC_016856.1 3929375 3929608 R hypothetical 9.0 kDa protein in rfaB-rfaP intergenic region (SW:YIBR_SALTY); putative inner membrane protein complement(3929375..3929608) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239962.1 CDS rfaP NC_016856.1 3929640 3930437 R lipopolysaccharide core biosynthetic protein RfaP (SW:RFAP_SALTY); phosphorylation of core heptose; lipopolysaccharide core biosynthetic protein complement(3929640..3930437) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239963.1 CDS rfaG NC_016856.1 3930430 3931554 R similar to Escherichia coli glucosyltransferase I; lipopolysaccharide core biosynthesis (AAC76655.1); glucosyltransferase I complement(3930430..3931554) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239964.1 CDS rfaQ NC_016856.1 3931551 3932585 R similar to Escherichia coli lipopolysaccharide core biosynthetic protein (AAC76656.1); modification of heptose region of core; lipopolysaccharide core biosynthesis protein complement(3931551..3932585) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239965.1 CDS STM14_4485 NC_016856.1 3932731 3932850 R hypothetical protein complement(3932731..3932850) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239966.1 CDS kdtA NC_016856.1 3933030 3934307 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3933030..3934307 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239967.1 CDS coaD NC_016856.1 3934316 3934795 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3934316..3934795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239968.1 CDS mutM NC_016856.1 3934823 3935632 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3934823..3935632) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239969.1 CDS rpmG NC_016856.1 3935730 3935897 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(3935730..3935897) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239970.1 CDS rpmB NC_016856.1 3935918 3936154 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(3935918..3936154) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239971.1 CDS radC NC_016856.1 3936372 3937211 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(3936372..3937211) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239972.1 CDS dfp NC_016856.1 3937213 3938433 D Catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine.; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3937213..3938433 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239973.1 CDS dut NC_016856.1 3938414 3938869 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3938414..3938869 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239974.1 CDS slmA NC_016856.1 3938977 3939573 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3938977..3939573 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239975.1 CDS pyrE NC_016856.1 3939651 3940292 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(3939651..3940292) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239976.1 CDS rph NC_016856.1 3940371 3941087 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(3940371..3941087) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239977.1 CDS STM14_4497 NC_016856.1 3941019 3941198 D hypothetical protein 3941019..3941198 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239978.1 CDS yicC NC_016856.1 3941213 3942076 D similar to Escherichia coli putative alpha helix protein (AAC76668.1); hypothetical protein 3941213..3942076 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239979.1 CDS STM14_4499 NC_016856.1 3942126 3943028 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73730.1); LysR family; putative transcriptional regulator complement(3942126..3943028) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239980.1 CDS STM14_4500 NC_016856.1 3943102 3943983 D similar to glyoxylases; putative Zn-dependent hydrolase 3943102..3943983 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239981.1 CDS STM14_4501 NC_016856.1 3943928 3944110 D hypothetical protein 3943928..3944110 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239982.1 CDS STM14_4502 NC_016856.1 3944234 3944851 D putative inner membrane protein 3944234..3944851 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239983.1 CDS ligB NC_016856.1 3944848 3946533 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB complement(3944848..3946533) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239984.1 CDS STM14_4504 NC_016856.1 3946552 3946725 D hypothetical protein 3946552..3946725 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239985.1 CDS gmk NC_016856.1 3946790 3947413 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3946790..3947413 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239986.1 CDS rpoZ NC_016856.1 3947468 3947743 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3947468..3947743 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239987.1 CDS spoT NC_016856.1 3947762 3949873 D similar to Escherichia coli (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (AAC76674.1); bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3947762..3949873 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239988.1 CDS spoU NC_016856.1 3949878 3950567 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3949878..3950567 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239989.1 CDS recG NC_016856.1 3950573 3952654 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3950573..3952654 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239990.1 CDS STM14_4510 NC_016856.1 3952657 3953508 R putative cytoplasmic protein complement(3952657..3953508) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239991.1 CDS gltS NC_016856.1 3953511 3954716 R similar to Escherichia coli glutamate transport (AAC76677.1); GltS family; glutamate transport protein complement(3953511..3954716) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239992.1 CDS STM14_4512 NC_016856.1 3954806 3954916 R hypothetical protein complement(3954806..3954916) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239993.1 CDS yicE NC_016856.1 3954944 3956335 D similar to Escherichia coli putative transport protein (AAC76678.1); NCS2 family; putative purine/xanthine transport protein 3954944..3956335 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239994.1 CDS yicH NC_016856.1 3956456 3958165 D putative inner membrane protein 3956456..3958165 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239995.1 CDS yicI NC_016856.1 3958268 3960586 R catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase complement(3958268..3960586) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239996.1 CDS yicJ NC_016856.1 3960598 3961980 R may be involved in the transport of galactosides-pentoses-hexuronides; putative transporter complement(3960598..3961980) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239997.1 CDS STM14_4518 NC_016856.1 3962472 3962597 D hypothetical protein 3962472..3962597 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239998.1 CDS STM14_4519 NC_016856.1 3962679 3963023 R putative cytoplasmic protein complement(3962679..3963023) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005239999.1 CDS STM14_4520 NC_016856.1 3963213 3963356 D hypothetical protein 3963213..3963356 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240000.1 CDS STM14_4521 NC_016856.1 3963387 3963497 R hypothetical protein complement(3963387..3963497) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240001.1 CDS sugR NC_016856.1 3963701 3964891 D similar to putative ATP binding protein SugR (gi|4324607); ATP-binding protein 3963701..3964891 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240002.1 CDS STM14_4523 NC_016856.1 3964888 3965238 D similar to putative ATP binding protein SugR (gi|4324607); putative cytoplasmic protein 3964888..3965238 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240003.1 CDS rhuM NC_016856.1 3965425 3966462 D RhuM (gi|4324608); putative cytoplasmic protein 3965425..3966462 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240004.1 CDS rmbA NC_016856.1 3967761 3968378 D RmbA (gi|4324609); putative cytoplasmic protein 3967761..3968378 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240005.1 CDS misL NC_016856.1 3968453 3971320 D MisL (gi|4324610); similar to AIDA-I autotransporter; member of IgA1 family of proteases; outer membrane protein; putative autotransporter 3968453..3971320 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240006.1 CDS fidL NC_016856.1 3971415 3971879 R FidL (gi|4324611); putative inner membrane protein complement(3971415..3971879) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240007.1 CDS marT NC_016856.1 3971890 3972678 R putative transcriptional regulator MarT (gi|4324612); similar to Vibrio cholerae ToxR; putative transcriptional regulator complement(3971890..3972678) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240008.1 CDS STM14_4531 NC_016856.1 3973351 3973476 D hypothetical protein 3973351..3973476 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240009.1 CDS slsA NC_016856.1 3973531 3974211 D SlsA (gi|4324613); similar to STM0950; putative inner membrane protein 3973531..3974211 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240010.1 CDS STM14_4533 NC_016856.1 3974252 3974359 R hypothetical protein complement(3974252..3974359) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240011.1 CDS cigR NC_016856.1 3974440 3974919 R CigR (gi|4324614); putative inner membrane protein complement(3974440..3974919) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240012.1 CDS STM14_4535 NC_016856.1 3974935 3975075 D hypothetical protein 3974935..3975075 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240013.1 CDS mgtB NC_016856.1 3975234 3977960 R Mg(2+) transport ATPase, P-type 2 (SW:ATMB_SALTY); cotranscribed with mgtC; Mg2+ transporter complement(3975234..3977960) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240014.1 CDS STM14_4537 NC_016856.1 3978059 3978172 D hypothetical protein 3978059..3978172 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240015.1 CDS mgtC NC_016856.1 3978180 3978875 R Mg(2+) transport ATPase protein C (SW:ATMC_SALTY); reqired for intracmacrophage survival and growth in low calcium; cotranscribed with mgtB and transcriptionally controlled by PhoP/PhoQ system; Mg2+ transport protein complement(3978180..3978875) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240016.1 CDS STM14_4539 NC_016856.1 3979055 3979171 D hypothetical protein 3979055..3979171 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240017.1 CDS STM14_4540 NC_016856.1 3979172 3979297 R hypothetical protein complement(3979172..3979297) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240018.1 CDS yicL NC_016856.1 3979384 3980286 D hypothetical protein in selC 3'region (SW:YICL_SALTY); integral membrane protein; putative permease 3979384..3980286 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240019.1 CDS STM14_4542 NC_016856.1 3980329 3981270 R putative cytoplasmic protein complement(3980329..3981270) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240020.1 CDS STM14_4543 NC_016856.1 3981506 3982249 R putative cytoplasmic protein complement(3981506..3982249) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240021.1 CDS STM14_4544 NC_016856.1 3982236 3983345 R L-seryl-tRNA selenium transferase; putative selenocysteine synthase complement(3982236..3983345) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240022.1 CDS STM14_4545 NC_016856.1 3983349 3984206 R similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative PTS system transporter subunit complement(3983349..3984206) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240023.1 CDS STM14_4546 NC_016856.1 3984206 3984955 R similar to Escherichia coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1); putative PTS system transporter subunitC complement(3984206..3984955) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240024.1 CDS STM14_4547 NC_016856.1 3985101 3985586 R similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS system transporter subunitB complement(3985101..3985586) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240025.1 CDS STM14_4548 NC_016856.1 3985597 3986022 R putative PTS system transporter subunitA complement(3985597..3986022) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240026.1 CDS STM14_4549 NC_016856.1 3986024 3986146 D hypothetical protein 3986024..3986146 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240027.1 CDS STM14_4550 NC_016856.1 3986241 3989039 R similar to Escherichia coli psp operon transcriptional activator (AAC74385.1); NtrC family; contains ATPase domain; putative transcriptional regulator complement(3986241..3989039) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240028.1 CDS STM14_4551 NC_016856.1 3989051 3989164 R hypothetical protein complement(3989051..3989164) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240029.1 CDS STM14_4552 NC_016856.1 3989236 3989529 D putative inner membrane protein 3989236..3989529 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240030.1 CDS STM14_4553 NC_016856.1 3989514 3989657 D hypothetical protein 3989514..3989657 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240031.1 CDS STM14_4554 NC_016856.1 3989635 3991017 D similar to Escherichia coli 6-phospho-beta-glucosidase; cryptic (AAC75758.1); putative glycosyl hydrolase 3989635..3991017 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240032.1 CDS nepI NC_016856.1 3991077 3992270 R experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; ribonucleoside transporter complement(3991077..3992270) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240033.1 CDS STM14_4556 NC_016856.1 3992486 3992845 D putative cytoplasmic protein 3992486..3992845 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240034.1 CDS STM14_4557 NC_016856.1 3992829 3993152 D helix-turn-helix; putative DNA-binding protein 3992829..3993152 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240035.1 CDS STM14_4558 NC_016856.1 3993243 3993512 R similar to Escherichia coli PTS system protein HPr (AAC75468.1); putative phosphotransferase system HPr protein complement(3993243..3993512) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240036.1 CDS gatY_2 NC_016856.1 3993522 3994382 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; putative fructose-1,6-bisphosphate aldolase complement(3993522..3994382) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240037.1 CDS STM14_4560 NC_016856.1 3994445 3995929 R similar to Escherichia coli L-fuculokinase (AAC75845.1); pentulose and hexulose; putative sugar kinase complement(3994445..3995929) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240038.1 CDS STM14_4561 NC_016856.1 3995922 3997280 R similar to Escherichia coli PTS system galactitol-specific enzyme IIC (AAC75153.1); putative PTS system galactitol-specific enzyme IIC component complement(3995922..3997280) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240039.1 CDS STM14_4562 NC_016856.1 3997356 3997643 R similar to Escherichia coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); hypothetical protein complement(3997356..3997643) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240040.1 CDS STM14_4563 NC_016856.1 3997640 3998113 R similar to Escherichia coli galactitol-specific enzyme IIA of phosphotransferase system (AAC75155.1); phosphotransferase system mannitol/fructose-specific IIA component complement(3997640..3998113) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240041.1 CDS STM14_4564 NC_016856.1 3998131 3998874 R similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); GntR family; putative regulatory protein complement(3998131..3998874) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240042.1 CDS STM14_4565 NC_016856.1 3999123 3999230 R hypothetical protein complement(3999123..3999230) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240043.1 CDS yicN NC_016856.1 3999227 3999679 R putative inner membrane protein complement(3999227..3999679) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240044.1 CDS STM14_4567 NC_016856.1 3999764 3999871 R hypothetical protein complement(3999764..3999871) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240045.1 CDS uhpT NC_016856.1 3999872 4001263 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter complement(3999872..4001263) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240046.1 CDS uhpC NC_016856.1 4001406 4002734 R membrane protein regulates uhpT expression; regulatory protein UhpC complement(4001406..4002734) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240047.1 CDS uhpB NC_016856.1 4002744 4004246 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB complement(4002744..4004246) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240048.1 CDS uhpA NC_016856.1 4004246 4004836 R response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; DNA-binding transcriptional activator UhpA complement(4004246..4004836) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240049.1 CDS STM14_4572 NC_016856.1 4004911 4005924 R putative cytoplasmic protein complement(4004911..4005924) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240050.1 CDS STM14_4573 NC_016856.1 4005936 4007252 R similar to Escherichia coli fucose permease (AAC75843.1); putative L-fucose permease complement(4005936..4007252) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240051.1 CDS STM14_4574 NC_016856.1 4007283 4008203 R similar to Escherichia coli ribokinase (AAC76775.1); ribokinase family; putative sugar kinase complement(4007283..4008203) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240052.1 CDS STM14_4575 NC_016856.1 4008528 4009313 D similar to Escherichia coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); DeoR family; putative regulatory protein 4008528..4009313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240053.1 CDS ilvN NC_016856.1 4009315 4009605 R with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit complement(4009315..4009605) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240054.1 CDS ilvB NC_016856.1 4009609 4011297 R catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit complement(4009609..4011297) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240055.1 CDS STM14_4578 NC_016856.1 4011296 4011472 D hypothetical protein 4011296..4011472 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240056.1 CDS ivbL NC_016856.1 4011404 4011502 R similar to Escherichia coli ilvB operon leader peptide (AAC76695.1); ilvB operon leader peptide complement(4011404..4011502) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240057.1 CDS STM14_4580 NC_016856.1 4011519 4011680 D hypothetical protein 4011519..4011680 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240058.1 CDS STM14_4581 NC_016856.1 4011613 4011768 R hypothetical protein complement(4011613..4011768) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240059.1 CDS STM14_4582 NC_016856.1 4011777 4011950 D hypothetical protein 4011777..4011950 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240060.1 CDS STM14_4585 NC_016856.1 4012345 4013178 D integral membrane protein 4012345..4013178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240061.1 CDS emrD NC_016856.1 4013381 4014565 D multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 4013381..4014565 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240062.1 CDS STM14_4587 NC_016856.1 4014492 4015577 R hypothetical protein complement(4014492..4015577) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240063.1 CDS dsdC NC_016856.1 4015641 4016564 R regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC complement(4015641..4016564) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240064.1 CDS STM14_4589 NC_016856.1 4016572 4016697 R hypothetical protein complement(4016572..4016697) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240065.1 CDS dsdX NC_016856.1 4016790 4018127 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 4016790..4018127 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240066.1 CDS dsdA NC_016856.1 4018145 4019467 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 4018145..4019467 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240067.1 CDS yidF NC_016856.1 4019549 4020079 R similar to Escherichia coli putative transcriptional regulator (AAC76697.1); putative cytoplasmic protein complement(4019549..4020079) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240068.1 CDS yidG NC_016856.1 4020076 4020438 R putative inner membrane protein complement(4020076..4020438) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240069.1 CDS yidH NC_016856.1 4020428 4020775 R putative inner membrane protein complement(4020428..4020775) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240070.1 CDS STM14_4595 NC_016856.1 4020774 4020887 D hypothetical protein 4020774..4020887 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240071.1 CDS yidE NC_016856.1 4021219 4022880 R similar to Escherichia coli putative transport protein (AAC76708.1); hypothetical protein complement(4021219..4022880) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240072.1 CDS STM14_4598 NC_016856.1 4022921 4023073 D hypothetical protein 4022921..4023073 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240073.1 CDS ibpB NC_016856.1 4023070 4023498 R 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB complement(4023070..4023498) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240074.1 CDS ibpA NC_016856.1 4023608 4024027 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA complement(4023608..4024027) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240075.1 CDS STM14_4601 NC_016856.1 4024130 4024306 D hypothetical protein 4024130..4024306 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240076.1 CDS yidQ NC_016856.1 4024328 4024663 D hypothetical protein 4024328..4024663 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240077.1 CDS yidR NC_016856.1 4024665 4025891 R putative cytoplasmic protein complement(4024665..4025891) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240078.1 CDS ccmH_2 NC_016856.1 4026013 4027056 R similar to Escherichia coli possible subunit of heme lyase (AAC75254.1); involved in cytochrome c-type biogenesis; putative heme lyase subunit complement(4026013..4027056) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240079.1 CDS ccmG_2 NC_016856.1 4027053 4027610 R similar to Escherichia coli disulfide oxidoreductase; biogenesis of cytochrome c (AAC75255.1); heme lyase disulfide oxidoreductase complement(4027053..4027610) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240080.1 CDS ccmF_2 NC_016856.1 4027607 4029538 R similar to Escherichia coli cytochrome c-type biogenesis protein (AAC75256.1); cytochrome c-type biogenesis protein complement(4027607..4029538) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240081.1 CDS ccmE_2 NC_016856.1 4029535 4030014 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(4029535..4030014) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240082.1 CDS ccmD_2 NC_016856.1 4030011 4030223 R similar to Escherichia coli heme exporter protein C (AAC75258.1); cytochrome c-type biogenesis protein; heme exporter protein C complement(4030011..4030223) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240083.1 CDS ccmC_2 NC_016856.1 4030220 4030957 R similar to Escherichia coli heme exporter protein C (AAC75259.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein complement(4030220..4030957) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240084.1 CDS ccmB_2 NC_016856.1 4031009 4031668 R similar to Escherichia coli heme exporter protein B cytochrome c-type biogenesis protein (AAC75260.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein complement(4031009..4031668) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240085.1 CDS ccmA_2 NC_016856.1 4031665 4032282 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(4031665..4032282) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240086.1 CDS STM14_4612 NC_016856.1 4032288 4033688 R similar to Escherichia coli putative cytochrome C peroxidase (AAC76543.1); putative cytochrome c peroxidase complement(4032288..4033688) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240087.1 CDS torD NC_016856.1 4033878 4034510 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD complement(4033878..4034510) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240088.1 CDS torA NC_016856.1 4034503 4037055 R similar to Escherichia coli trimethylamine N-oxide reductase subunit (AAC74082.1); trimethylamine N-oxide reductase subunit complement(4034503..4037055) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240089.1 CDS torC NC_016856.1 4037045 4038229 R similar to Escherichia coli trimethylamine N-oxide reductase; cytochrome c-type subunit (AAC74081.1); also has activity as negativer regulator of tor operon; trimethylamine N-oxide reductase cytochrome c-like subunit complement(4037045..4038229) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240090.1 CDS torR NC_016856.1 4038359 4039051 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 4038359..4039051 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240091.1 CDS torT NC_016856.1 4039024 4040064 R similar to Escherichia coli sensor protein involved in regulation of tor operon; periplasmic (AAC74079.1); protein in multi-component regulatory system with sensory kinase TorS and regulator TorR; periplasmic sensory protein associated with the TorRS two-component regulatory system complement(4039024..4040064) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240092.1 CDS torS NC_016856.1 4040144 4042879 D Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 4040144..4042879 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240093.1 CDS dgoT NC_016856.1 4042905 4044242 R similar to Escherichia coli D-galactonate transport (AAC76714.1); MFS family; D-galactonate transport protein complement(4042905..4044242) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240094.1 CDS dgoA NC_016856.1 4044327 4045475 R similar to Escherichia coli 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase (AAC76715.1); 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase complement(4044327..4045475) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240095.1 CDS dgoK NC_016856.1 4046073 4046951 R similar to Escherichia coli 2-oxo-3-deoxygalactonate kinase (AAC76716.1); 2-oxo-3-deoxygalactonate kinase complement(4046073..4046951) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240096.1 CDS dgoR NC_016856.1 4046948 4047637 R similar to Escherichia coli regulator protein for dgo operon (AAC76718.1); GntR family; galactonate operon transcriptional repressor complement(4046948..4047637) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240097.1 CDS yidA NC_016856.1 4047898 4048743 R YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase complement(4047898..4048743) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240098.1 CDS STM14_4625 NC_016856.1 4049049 4050311 D similar to Escherichia coli putative transport protein (AAC75831.1); putative permease 4049049..4050311 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240099.1 CDS STM14_4626 NC_016856.1 4050325 4051518 D similar to Escherichia coli starvation-sensing protein (AAC74653.1); muconate lactonizing enzyme family; putative mandelate racemase 4050325..4051518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240100.1 CDS STM14_4627 NC_016856.1 4051633 4052529 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73855.1); LysR family; putative transcriptional regulator 4051633..4052529 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240101.1 CDS gyrB NC_016856.1 4052548 4054962 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(4052548..4054962) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240102.1 CDS recF NC_016856.1 4054991 4056064 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(4054991..4056064) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240103.1 CDS STM14_4630 NC_016856.1 4056093 4056239 D hypothetical protein 4056093..4056239 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240104.1 CDS dnaN NC_016856.1 4056212 4057312 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(4056212..4057312) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240105.1 CDS dnaA NC_016856.1 4057317 4058717 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(4057317..4058717) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240106.1 CDS STM14_4633 NC_016856.1 4059079 4059237 D hypothetical protein 4059079..4059237 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240107.1 CDS rpmH NC_016856.1 4059378 4059518 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4059378..4059518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240108.1 CDS rnpA NC_016856.1 4059535 4059894 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4059535..4059894 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240109.1 CDS STM14_4636 NC_016856.1 4059858 4060115 D hypothetical protein 4059858..4060115 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240110.1 CDS yidC NC_016856.1 4060118 4061764 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 4060118..4061764 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240111.1 CDS trmE NC_016856.1 4061906 4063270 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4061906..4063270 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240112.1 CDS STM14_4640 NC_016856.1 4065071 4066033 D putative inner membrane protein 4065071..4066033 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240113.1 CDS STM14_4641 NC_016856.1 4066033 4066968 D RNA-dependent DNA polymerase; putative reverse transcriptase 4066033..4066968 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240114.1 CDS yidY NC_016856.1 4067770 4068957 D Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 4067770..4068957 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240115.1 CDS yidZ NC_016856.1 4068926 4069885 D Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 4068926..4069885 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240116.1 CDS yieE NC_016856.1 4070043 4070798 D putative cytoplasmic protein 4070043..4070798 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240117.1 CDS yieF NC_016856.1 4070816 4071382 D putative oxidoreductase 4070816..4071382 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240118.2 CDS yieG NC_016856.1 4071427 4072764 R similar to Escherichia coli putative membrane/transport protein (AAC76737.1); xanthine/uracil permeases family; putative xanthine/uracil permease family protein complement(4071427..4072764) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240119.1 CDS yieH NC_016856.1 4072933 4073598 D YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase 4072933..4073598 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240120.1 CDS phoU NC_016856.1 4073693 4074418 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(4073693..4074418) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240121.1 CDS pstB NC_016856.1 4074433 4075206 R similar to Escherichia coli ATP-binding component of high-affinity phosphate-specific transport system (AAC76748.1); ABC superfamily ATP-binding protein; phosphate transporter subunit complement(4074433..4075206) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240122.1 CDS pstA NC_016856.1 4075293 4076183 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit complement(4075293..4076183) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240123.1 CDS pstC NC_016856.1 4076183 4077142 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit complement(4076183..4077142) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240124.1 CDS pstS NC_016856.1 4077278 4078318 R similar to Escherichia coli high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein (AAC76751.1); ABC superfamily binding protein; phosphate transporter subunit complement(4077278..4078318) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240125.1 CDS STM14_4653 NC_016856.1 4078485 4079858 R similar to Escherichia coli PTS system; fructose-specific transport protein (AAC75228.1); putative phosphotransferase system fructose-specific component IIB complement(4078485..4079858) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240126.1 CDS aroE_3 NC_016856.1 4079907 4080725 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4079907..4080725) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240127.1 CDS STM14_4655 NC_016856.1 4080820 4082577 D similar to Escherichia coli putative transport protein (AAC73180.1); putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 4080820..4082577 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240128.1 CDS glmS NC_016856.1 4082728 4084557 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6Pusing glutamine as a nitrogen source; D-fructose-6-phosphate amidotransferase complement(4082728..4084557) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240129.1 CDS glmU NC_016856.1 4084746 4086116 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4084746..4086116) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240130.1 CDS STM14_4658 NC_016856.1 4086316 4086504 D hypothetical protein 4086316..4086504 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240131.1 CDS STM14_4659 NC_016856.1 4086436 4087134 R putative permease complement(4086436..4087134) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240132.1 CDS atpC NC_016856.1 4087364 4087783 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4087364..4087783) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240133.1 CDS atpD NC_016856.1 4087804 4089186 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4087804..4089186) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240134.1 CDS atpG NC_016856.1 4089213 4090076 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4089213..4090076) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240135.1 CDS atpA NC_016856.1 4090127 4091668 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4090127..4091668) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240136.1 CDS atpH NC_016856.1 4091681 4092214 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4091681..4092214) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240137.1 CDS atpF NC_016856.1 4092229 4092699 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4092229..4092699) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240138.1 CDS atpE NC_016856.1 4092759 4092998 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4092759..4092998) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240139.1 CDS atpB NC_016856.1 4093045 4093860 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4093045..4093860) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240140.1 CDS atpI NC_016856.1 4093869 4094249 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(4093869..4094249) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240141.1 CDS STM14_4669 NC_016856.1 4094364 4094507 R hypothetical protein complement(4094364..4094507) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240142.1 CDS gidB NC_016856.1 4094865 4095494 R probable SAM-dependent methyltransferase; glucose-inhibited division protein B complement(4094865..4095494) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240143.1 CDS gidA NC_016856.1 4095591 4097480 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4095591..4097480) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240144.1 CDS mioC NC_016856.1 4097859 4098302 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(4097859..4098302) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240145.1 CDS asnC NC_016856.1 4098392 4098850 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(4098392..4098850) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240146.1 CDS asnA NC_016856.1 4099001 4099993 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4099001..4099993 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240147.1 CDS yieM NC_016856.1 4099998 4101449 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein complement(4099998..4101449) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240148.1 CDS yieN NC_016856.1 4101443 4103047 R interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA complement(4101443..4103047) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240149.1 CDS trkD NC_016856.1 4103287 4105155 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4103287..4105155 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240150.1 CDS rbsD NC_016856.1 4105352 4105771 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4105352..4105771 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240151.1 CDS rbsA NC_016856.1 4105779 4107284 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 4105779..4107284 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240152.1 CDS rbsC NC_016856.1 4107290 4108255 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4107290..4108255 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240153.1 CDS rbsB NC_016856.1 4108280 4109170 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4108280..4109170 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240154.1 CDS rbsK NC_016856.1 4109304 4110233 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4109304..4110233 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240155.1 CDS rbsR NC_016856.1 4110237 4111235 D DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4110237..4111235 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240156.1 CDS yieO NC_016856.1 4111201 4112628 R similar to Escherichia coli putative transport protein (AAC76777.1); MFS family; 1st module; putative tranport protein complement(4111201..4112628) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240157.1 CDS yieP NC_016856.1 4112640 4113344 R GntR family; putative regulatory protein complement(4112640..4113344) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240158.1 CDS yifA NC_016856.1 4119236 4120084 R Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR complement(4119236..4120084) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240159.1 CDS yifE NC_016856.1 4120191 4120529 D LysR type regulator; with pssR; hypothetical protein 4120191..4120529 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240160.1 CDS yifB NC_016856.1 4120554 4122074 R among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; putative ATP-dependent protease complement(4120554..4122074) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240161.1 CDS STM14_4696 NC_016856.1 4122161 4122346 D hypothetical protein 4122161..4122346 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240162.1 CDS ilvL NC_016856.1 4122426 4122524 D ilvGmedA operon leader peptide; attenuator peptide (SW:LPID_ECOLI); ilvG operon leader peptide 4122426..4122524 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240163.1 CDS ilvG NC_016856.1 4122664 4124310 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4122664..4124310 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240164.1 CDS ilvM NC_016856.1 4124310 4124570 D similar to Escherichia coli acetolactate synthase II; valine insensitive (AAC77489.1); acetolactate synthase 2 regulatory subunit 4124310..4124570 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240165.1 CDS ilvE NC_016856.1 4124588 4125517 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4124588..4125517 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240166.1 CDS ilvD NC_016856.1 4125678 4127528 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4125678..4127528 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240167.1 CDS ilvA NC_016856.1 4127531 4129075 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4127531..4129075 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240168.1 CDS STM14_4703 NC_016856.1 4129359 4129676 D putative cytoplasmic protein 4129359..4129676 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240169.1 CDS STM14_4704 NC_016856.1 4129673 4130014 D putative cytoplasmic protein 4129673..4130014 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240170.1 CDS ilvY NC_016856.1 4130017 4130904 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(4130017..4130904) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240171.1 CDS ilvC NC_016856.1 4131068 4132543 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4131068..4132543 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240172.1 CDS ppiC NC_016856.1 4132635 4132916 R similar to Escherichia coli peptidyl-prolyl cis-trans isomerase C; rotamase C (AAC76780.1); peptidyl-prolyl cis-trans isomerase C complement(4132635..4132916) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240173.1 CDS STM14_4708 NC_016856.1 4132921 4133268 D cyclic nucleotide-binding domain-containing protein 4132921..4133268 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240174.1 CDS STM14_4709 NC_016856.1 4133205 4133354 D similar to Escherichia coli required for NMN transport (AAC73838.1); putative inner membrane protein 4133205..4133354 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240175.1 CDS rep NC_016856.1 4133355 4135478 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4133355..4135478 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240176.1 CDS gppA NC_016856.1 4135518 4136999 R catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase complement(4135518..4136999) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240177.1 CDS rhlB NC_016856.1 4137118 4138383 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(4137118..4138383) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240178.1 CDS trxA NC_016856.1 4138527 4138856 D thioredoxin 1; TRX1; TRX (SW:THIO_ECOLI); redox factor; thioredoxin 4138527..4138856 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240179.1 CDS rho NC_016856.1 4139275 4140534 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4139275..4140534 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240180.1 CDS rfe NC_016856.1 4140764 4141867 D similar to Escherichia coli UDP-GlcNAc-undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen; ECA (AAC76789.1); undecaprenyl-phosphate N-acetylglucosaminyltransferase 4140764..4141867 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240181.1 CDS wzzE NC_016856.1 4141879 4142925 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4141879..4142925 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240182.1 CDS wecB NC_016856.1 4142981 4144111 D similar to Escherichia coli UDP-N-acetyl glucosamine-2-epimerase; synthesis of enterobacterial common antigen; ECA (AAC76791.1); UDP-N-acetyl glucosamine-2-epimerase 4142981..4144111 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240183.1 CDS wecC NC_016856.1 4144108 4145370 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4144108..4145370 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240184.1 CDS rffG NC_016856.1 4145370 4146437 D similar to Escherichia coli dTDP-glucose 4,6-dehydratase (AAC76793.1); dTDP-glucose 4,6-dehydratase 4145370..4146437 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240185.1 CDS rffH NC_016856.1 4146470 4146694 D similar to Escherichia coli glucose-1-phosphate thymidylyltransferase (AAC76794.1); glucose-1-phosphate thymidylyltransferase 4146470..4146694 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240186.1 CDS wecD NC_016856.1 4146672 4147349 D TDP-fucosamine acetyltransferase 4146672..4147349 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240187.1 CDS wecE NC_016856.1 4147354 4148484 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4147354..4148484 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240188.1 CDS wzxE NC_016856.1 4148486 4149736 D similar to Escherichia coli putative cytochrome (AAC76797.1); involved in LPS biosynthesis; O-antigen translocase 4148486..4149736 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240189.1 CDS STM14_4725 NC_016856.1 4149733 4150812 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4149733..4150812 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240190.1 CDS wecF NC_016856.1 4150809 4152167 D probable 4-alpha-L-fucosyltransferase (SW:WECF_SALTY); putative entero common antigen polymerase 4150809..4152167 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240191.1 CDS wecG NC_016856.1 4152164 4152904 D probable UDP-N-acetyl-D-mannosaminuronic acid transferase (SW:WECG_SALTY); putative UDP-N-acetyl-D-mannosaminuronic acid transferase 4152164..4152904 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240192.1 CDS yifK NC_016856.1 4153111 4154496 D uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; putative transport protein YifK 4153111..4154496 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240193.1 CDS STM14_4733 NC_016856.1 4155257 4155382 D hypothetical protein 4155257..4155382 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240194.1 CDS hemY NC_016856.1 4155613 4156812 R similar to Escherichia coli protein involved in a late step of protoheme IX synthesis (AAC76805.1); putative protoheme IX biogenesis protein complement(4155613..4156812) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240195.1 CDS hemX NC_016856.1 4156812 4157981 R similar to Escherichia coli uroporphyrinogen III methylase (AAC76806.1); putative uroporphyrinogen III C-methyltransferase complement(4156812..4157981) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240196.1 CDS hemD NC_016856.1 4158003 4158743 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(4158003..4158743) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240197.1 CDS hemC NC_016856.1 4158740 4159696 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(4158740..4159696) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240198.1 CDS STM14_4738 NC_016856.1 4159908 4160012 R hypothetical protein complement(4159908..4160012) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240199.1 CDS cyaA NC_016856.1 4160058 4162604 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4160058..4162604 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240200.1 CDS STM14_4740 NC_016856.1 4162570 4162710 D hypothetical protein 4162570..4162710 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240201.1 CDS STM14_4741 NC_016856.1 4162712 4163065 D putative inner membrane protein 4162712..4163065 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240202.1 CDS STM14_4742 NC_016856.1 4163251 4163793 D putative inner membrane protein 4163251..4163793 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240203.1 CDS STM14_4743 NC_016856.1 4163805 4164167 D putative cytoplasmic protein 4163805..4164167 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240204.1 CDS cyaY NC_016856.1 4164238 4164558 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(4164238..4164558) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240205.1 CDS STM14_4745 NC_016856.1 4164628 4165017 R putative inner membrane protein complement(4164628..4165017) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240206.1 CDS yifL NC_016856.1 4165713 4165916 D putative outer membrane lipoprotein 4165713..4165916 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240207.1 CDS dapF NC_016856.1 4165953 4166777 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4165953..4166777 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240208.1 CDS yigA NC_016856.1 4166774 4167481 D hypothetical protein in dapF-xerC intergenic region (SW:YIGA_SALTY); hypothetical protein 4166774..4167481 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240209.1 CDS xerC NC_016856.1 4167478 4168380 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4167478..4168380 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240210.1 CDS yigB NC_016856.1 4168380 4169096 D YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4168380..4169096 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240211.1 CDS uvrD NC_016856.1 4169232 4171394 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4169232..4171394 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240212.1 CDS STM14_4753 NC_016856.1 4171444 4171629 R hypothetical protein complement(4171444..4171629) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240213.1 CDS corA NC_016856.1 4171866 4172816 D responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4171866..4172816 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240214.1 CDS yigF NC_016856.1 4172865 4173245 R hypothetical 14.6 kDa protein in corA-rarD intergenic region (SW:YIGF_SALTY); putative inner membrane protein complement(4172865..4173245) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240215.1 CDS yigG NC_016856.1 4173261 4173719 R hypothetical protein complement(4173261..4173719) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240216.1 CDS rarD NC_016856.1 4173754 4174638 R chloramphenicol resistance complement(4173754..4174638) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240217.1 CDS yigI NC_016856.1 4174682 4175149 R hypothetical protein in rarD-pldA intergenic region (SW:YIGI_SALTY); possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein complement(4174682..4175149) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240218.1 CDS STM14_4759 NC_016856.1 4175211 4175348 R hypothetical protein complement(4175211..4175348) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240219.1 CDS pldA NC_016856.1 4175314 4176183 D catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4175314..4176183 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240220.1 CDS recQ NC_016856.1 4176249 4178096 D functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4176249..4178096 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240221.1 CDS rhtC NC_016856.1 4178160 4178780 D RhtB family; threonine efflux system 4178160..4178780 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240222.1 CDS rhtB NC_016856.1 4178820 4179440 R homoserine/homoserine lactone efflux protein complement(4178820..4179440) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240223.1 CDS pldB NC_016856.1 4179455 4180567 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4179455..4180567 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240224.1 CDS yigL NC_016856.1 4180583 4181383 D purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; putative sugar phosphatase 4180583..4181383 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240225.1 CDS yigM NC_016856.1 4181464 4182363 D putative transport protein 4181464..4182363 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240226.1 CDS metR NC_016856.1 4182251 4183204 R transcriptional activator protein metR (SW:METR_SALTY); LysR family; metE/metH regulator complement(4182251..4183204) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240227.1 CDS STM14_4768 NC_016856.1 4183187 4183360 D hypothetical protein 4183187..4183360 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240228.1 CDS metE NC_016856.1 4183453 4185717 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4183453..4185717 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240229.1 CDS STM14_4770 NC_016856.1 4185870 4186004 R hypothetical protein complement(4185870..4186004) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240230.1 CDS STM14_4771 NC_016856.1 4185906 4186052 D hypothetical protein 4185906..4186052 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240231.1 CDS STM14_4772 NC_016856.1 4186061 4187404 D similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator 4186061..4187404 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240232.1 CDS dlhH NC_016856.1 4187484 4188296 R similar to Escherichia coli putative enzyme (AAC76833.1); putative dienelactone hydrolase complement(4187484..4188296) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240233.1 CDS udp NC_016856.1 4188555 4189316 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4188555..4189316 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240234.1 CDS yigN NC_016856.1 4189456 4190886 D YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4189456..4190886 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240235.1 CDS ubiE NC_016856.1 4190982 4191737 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4190982..4191737 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240236.1 CDS yigP NC_016856.1 4191747 4192352 D putative inner membrane protein 4191747..4192352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240237.1 CDS ubiB NC_016856.1 4192349 4193989 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 4192349..4193989 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240238.1 CDS tatA NC_016856.1 4194195 4194449 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin argininte translocase protein A 4194195..4194449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240239.1 CDS tatB NC_016856.1 4194453 4195001 D mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4194453..4195001 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240240.1 CDS tatC NC_016856.1 4195004 4195783 D integral membrane protein; TatABCE protein translocation system subunit 4195004..4195783 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240241.1 CDS yigW NC_016856.1 4195813 4196607 D magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4195813..4196607 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240242.1 CDS rfaH NC_016856.1 4196615 4197103 R similar to Escherichia coli transcriptional activator that affects biosynthesis of lipopolysaccharide core, F pilin, and haemolysin (AAC76845.1); responsible for full expression of operons rfa, rfb, hly, tra, chu, cps, and kps; may suppress operon polarity; transcriptional activator RfaH complement(4196615..4197103) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240243.1 CDS STM14_4784 NC_016856.1 4197098 4197223 D hypothetical protein 4197098..4197223 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240244.1 CDS yigC NC_016856.1 4197289 4198767 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4197289..4198767 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240245.1 CDS fre NC_016856.1 4198853 4199554 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; FMN reductase 4198853..4199554 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240246.1 CDS assT NC_016856.1 4199808 4201631 D arylsulfotransferase 4199808..4201631 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240247.1 CDS fadA NC_016856.1 4201828 4202991 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(4201828..4202991) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240248.1 CDS fadB NC_016856.1 4203001 4205316 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(4203001..4205316) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240249.1 CDS pepQ NC_016856.1 4205380 4206711 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4205380..4206711 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240250.1 CDS yigZ NC_016856.1 4206711 4207325 D hypothetical protein 4206711..4207325 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240251.1 CDS trkH NC_016856.1 4207364 4208815 D similar to Escherichia coli potassium uptake, requires TrkE (AAC76852.1); Trk family; potassium transporter 4207364..4208815 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240252.1 CDS hemG NC_016856.1 4208827 4209372 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4208827..4209372 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240253.1 CDS STM14_4797 NC_016856.1 4211633 4211749 D hypothetical protein 4211633..4211749 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240254.1 CDS STM14_4800 NC_016856.1 4215049 4215231 R hypothetical protein complement(4215049..4215231) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240255.1 CDS STM14_4801 NC_016856.1 4215077 4215433 D hypothetical protein 4215077..4215433 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240256.1 CDS mobB NC_016856.1 4215268 4215783 R similar to Escherichia coli molybdopterin-guanine dinucleotide biosynthesis protein B (AAC76854.1); GTP-binding; molybdopterin-guanine dinucleotide biosynthesis protein MobB complement(4215268..4215783) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240257.1 CDS mobA NC_016856.1 4215780 4216364 R Links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4215780..4216364) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240258.1 CDS yihD NC_016856.1 4216434 4216703 D putative cytoplasmic protein 4216434..4216703 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240259.1 CDS yihE NC_016856.1 4216780 4217766 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4216780..4217766 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240260.1 CDS dsbA NC_016856.1 4217783 4218406 D thiol-disulfide interchange protein DabA precursor (SW:DSBA_SALTY); protein disulfide isomerase I 4217783..4218406 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240261.1 CDS yihG NC_016856.1 4218419 4219327 R similar to Escherichia coli putative endonuclease (AAC76860.1); putative endonuclease complement(4218419..4219327) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240262.1 CDS STM14_4808 NC_016856.1 4219525 4219656 R hypothetical protein complement(4219525..4219656) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240263.1 CDS polA NC_016856.1 4219715 4222501 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4219715..4222501 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240264.1 CDS STM14_4811 NC_016856.1 4222708 4222851 D hypothetical protein 4222708..4222851 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240265.1 CDS yihA NC_016856.1 4222836 4223468 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; GTPase EngB complement(4222836..4223468) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240266.1 CDS STM14_4813 NC_016856.1 4223708 4223932 D putative cytoplasmic protein 4223708..4223932 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240267.1 CDS yihI NC_016856.1 4224051 4224566 D hypothetical 19.2 kDa protein in polA-hemN intergenic region (SW:YIHI_SALTY); hypothetical protein 4224051..4224566 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240268.1 CDS hemN NC_016856.1 4224755 4226128 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4224755..4226128 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240269.1 CDS STM14_4816 NC_016856.1 4226121 4226246 R hypothetical protein complement(4226121..4226246) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240270.1 CDS glnG NC_016856.1 4226441 4227850 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) complement(4226441..4227850) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240271.1 CDS glnL NC_016856.1 4227859 4228908 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) complement(4227859..4228908) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240272.1 CDS STM14_4819 NC_016856.1 4228860 4229039 R hypothetical protein complement(4228860..4229039) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240273.1 CDS glnA NC_016856.1 4229183 4230592 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(4229183..4230592) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240274.1 CDS STM14_4821 NC_016856.1 4230571 4230990 R putative cytoplasmic protein complement(4230571..4230990) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240275.1 CDS typA NC_016856.1 4230968 4232791 D similar to Escherichia coli putative GTP-binding factor (AAC76868.1); GTP-binding protein 4230968..4232791 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240276.1 CDS STM14_4823 NC_016856.1 4232846 4233580 R similar to Escherichia coli putative phosphatase (AAC73853.1); putative hydrolase complement(4232846..4233580) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240277.1 CDS STM14_4824 NC_016856.1 4233565 4234443 R putative inner membrane protein complement(4233565..4234443) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240278.1 CDS STM14_4825 NC_016856.1 4234440 4235681 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(4234440..4235681) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240279.1 CDS STM14_4826 NC_016856.1 4235683 4236546 R putative membrane-associated metal-dependent hydrolase complement(4235683..4236546) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240280.1 CDS STM14_4827 NC_016856.1 4236551 4237576 R hypothetical protein complement(4236551..4237576) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240281.1 CDS STM14_4828 NC_016856.1 4237589 4238437 R putative cytoplasmic protein complement(4237589..4238437) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240282.1 CDS yshA NC_016856.1 4238594 4239286 R porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L complement(4238594..4239286) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240283.1 CDS yihO NC_016856.1 4239354 4240775 R similar to Escherichia coli putative permease (AAC76873.1); GPH family transport protein complement(4239354..4240775) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240284.1 CDS yihP NC_016856.1 4240821 4242203 R similar to Escherichia coli putative permease (AAC76874.1); GPH family transport protein complement(4240821..4242203) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240285.1 CDS yihQ NC_016856.1 4242249 4244285 R similar to Escherichia coli putative glycosidase (AAC76875.1); alpha-glucosidase complement(4242249..4244285) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240286.1 CDS yihR NC_016856.1 4244329 4245180 R similar to Escherichia coli putative aldose-1-epimerase (AAC76876.1); putative aldose-1-epimerase complement(4244329..4245180) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240287.1 CDS yihS NC_016856.1 4245190 4246431 R putative isomerase complement(4245190..4246431) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240288.1 CDS yihT NC_016856.1 4246447 4247325 R similar to Escherichia coli putative aldolase (AAD13443.1); putative aldolase complement(4246447..4247325) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240289.1 CDS yihU NC_016856.1 4247348 4248244 R similar to Escherichia coli putative dehydrogenase (AAD13444.1); putative oxidoreductase complement(4247348..4248244) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240290.1 CDS STM14_4837 NC_016856.1 4248232 4248351 R hypothetical protein complement(4248232..4248351) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240291.1 CDS yihV NC_016856.1 4248403 4249305 D similar to Escherichia coli putative kinase (AAD13445.1); putative sugar kinase 4248403..4249305 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240292.1 CDS yihW NC_016856.1 4249339 4250142 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAD13446.1); DeoR family; putative glycerol-3-phosphate regulon repressor 4249339..4250142 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240293.1 CDS yihX NC_016856.1 4250333 4250932 D similar to Escherichia coli putative phosphatase (AAD13447.1); phosphatase 4250333..4250932 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240294.1 CDS rbn NC_016856.1 4250926 4251798 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4250926..4251798 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240295.1 CDS yihZ NC_016856.1 4251795 4252232 D Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA deacylase 4251795..4252232 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240296.1 CDS yiiD NC_016856.1 4252229 4253218 D similar to Escherichia coli putative acetyltransferase (AAD13450.1); putative acetyltransferase 4252229..4253218 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240297.1 CDS STM14_4844 NC_016856.1 4253233 4253661 R putative cytoplasmic protein complement(4253233..4253661) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240298.1 CDS STM14_4845 NC_016856.1 4253676 4253987 R putative cytoplasmic protein complement(4253676..4253987) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240299.1 CDS STM14_4846 NC_016856.1 4254073 4255002 R similar to Escherichia coli putative lipase (AAC73578.1); putative acetyl esterase complement(4254073..4255002) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240300.1 CDS STM14_4847 NC_016856.1 4255220 4255531 D hypothetical protein 4255220..4255531 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240301.1 CDS STM14_4848 NC_016856.1 4255532 4255822 D merR family; putative regulatory protein 4255532..4255822 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240302.1 CDS fdhE NC_016856.1 4255869 4256798 R required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE complement(4255869..4256798) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240303.1 CDS fdoI NC_016856.1 4256795 4257430 R cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma complement(4256795..4257430) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240304.1 CDS fdoH NC_016856.1 4257427 4258329 R similar to Escherichia coli formate dehydrogenase-O iron-sulfur subunit (AAD13455.1); Fe-S subunit; formate dehydrogenase-O beta subunit complement(4257427..4258329) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240305.1 CDS fdoG NC_016856.1 4258342 4261392 R similar to Escherichia coli formate dehydrogenase-O major subunit (AAD13456.1); formate dehydrogenase alpha subunit complement(4258342..4261392) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240306.1 CDS fdhD NC_016856.1 4261587 4262423 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4261587..4262423 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240307.1 CDS STM14_4854 NC_016856.1 4262409 4262564 R hypothetical protein complement(4262409..4262564) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240308.1 CDS STM14_4855 NC_016856.1 4262691 4263722 R putative inner membrane lipoprotein complement(4262691..4263722) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240309.1 CDS STM14_4856 NC_016856.1 4263770 4263904 D hypothetical protein 4263770..4263904 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240310.1 CDS yiiG NC_016856.1 4263947 4265005 D putative cytoplasmic protein 4263947..4265005 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240311.1 CDS STM14_4858 NC_016856.1 4265002 4265130 D hypothetical protein 4265002..4265130 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240312.1 CDS STM14_4859 NC_016856.1 4265360 4265683 R putative inner membrane protein complement(4265360..4265683) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240313.1 CDS STM14_4860 NC_016856.1 4265683 4266342 R putative branched-chain amino acid permease complement(4265683..4266342) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240314.1 CDS STM14_4861 NC_016856.1 4266425 4266991 D hypothetical protein 4266425..4266991 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240315.1 CDS yiiL NC_016856.1 4267080 4267394 R putative cytoplasmic protein complement(4267080..4267394) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240316.2 CDS STM14_4863 NC_016856.1 4267391 4268539 R similar to Escherichia coli putative oxidoreductase (AAC76613.1); iron-containing; putative alcohol dehydrogenase complement(4267391..4268539) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240317.1 CDS rhaD NC_016856.1 4268666 4269493 R similar to Escherichia coli rhamnulose-phosphate aldolase (AAC76884.1); rhamnulose-1-phosphate aldolase complement(4268666..4269493) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240318.1 CDS rhaA NC_016856.1 4269636 4270895 R catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase complement(4269636..4270895) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240319.1 CDS rhaB NC_016856.1 4270892 4272361 R catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase complement(4270892..4272361) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240320.1 CDS STM14_4867 NC_016856.1 4272347 4272496 D hypothetical protein 4272347..4272496 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240321.1 CDS STM14_4868 NC_016856.1 4272426 4272560 R hypothetical protein complement(4272426..4272560) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240322.1 CDS rhaS NC_016856.1 4272649 4273485 D activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4272649..4273485 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240323.1 CDS rhaR NC_016856.1 4273638 4274486 D activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4273638..4274486 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240324.1 CDS rhaT NC_016856.1 4274483 4275517 R transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter complement(4274483..4275517) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240325.1 CDS STM14_4872 NC_016856.1 4275521 4275652 D hypothetical protein 4275521..4275652 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240326.1 CDS STM14_4873 NC_016856.1 4275986 4276111 D hypothetical protein 4275986..4276111 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240327.1 CDS STM14_4874 NC_016856.1 4276136 4276819 D hypothetical 15.6 kDa protein in RhaT 5'region (SW:YIIY_SALTY); putative outer membrane protein 4276136..4276819 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240328.1 CDS STM14_4875 NC_016856.1 4276977 4278284 R similar to Escherichia coli putative membrane protein (AAC76602.1); putative C4-dicarboxylate transport system complement(4276977..4278284) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240329.1 CDS STM14_4876 NC_016856.1 4278277 4278792 R putative C4-dicarboxylate transport system complement(4278277..4278792) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240330.1 CDS STM14_4877 NC_016856.1 4278811 4279794 R hypothetical protein in sodA 5'region (SW:YIIZ_SALTY); putative periplasmic dicarboxylate-binding protein complement(4278811..4279794) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240331.1 CDS sodA NC_016856.1 4280123 4280743 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4280123..4280743 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240332.1 CDS yiiM NC_016856.1 4280813 4281502 D hypothetical protein 4280813..4281502 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240333.1 CDS STM14_4880 NC_016856.1 4281514 4281909 D putative inner membrane protein 4281514..4281909 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240334.1 CDS cpxA NC_016856.1 4281960 4283333 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein complement(4281960..4283333) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240335.1 CDS cpxR NC_016856.1 4283330 4284028 R response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR complement(4283330..4284028) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240336.1 CDS cpxP NC_016856.1 4284179 4284679 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4284179..4284679 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240337.1 CDS fieF NC_016856.1 4284827 4285729 D member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F 4284827..4285729 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240338.1 CDS pfkA NC_016856.1 4285914 4286876 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4285914..4286876 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240339.1 CDS STM14_4886 NC_016856.1 4286951 4287055 R hypothetical protein complement(4286951..4287055) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240340.1 CDS sbp NC_016856.1 4287080 4288069 D sulfate-binding protein (SW:SUBI_SALTY); ABC superfamily binding protein; sulfate transporter subunit 4287080..4288069 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240341.2 CDS ushB NC_016856.1 4288170 4288925 D CDP-diacylglycerol pyrophosphatase (SW:CDH_SALTY); CDP-diacylglycerol pyrophosphatase 4288170..4288925 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240342.1 CDS STM14_4889 NC_016856.1 4289188 4290522 D putative Na+/galactoside symporter 4289188..4290522 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240343.1 CDS STM14_4890 NC_016856.1 4290533 4291492 D phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4290533..4291492 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240344.1 CDS STM14_4891 NC_016856.1 4291502 4292542 D putative ADP-ribosylglycohydrolase 4291502..4292542 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240345.1 CDS STM14_4892 NC_016856.1 4292605 4293327 D similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); GntR family; putative regulatory protein 4292605..4293327 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240346.1 CDS STM14_4893 NC_016856.1 4293425 4293589 D hypothetical protein 4293425..4293589 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240347.1 CDS STM14_4894 NC_016856.1 4293605 4293736 D similar to Escherichia coli CDP-diacylglycerol phosphotidylhydrolase (AAC76900.1); putative cytoplasmic protein 4293605..4293736 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240348.1 CDS STM14_4895 NC_016856.1 4293826 4294176 R putative mannose-6-phosphate isomerase complement(4293826..4294176) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240349.1 CDS ydeV NC_016856.1 4294190 4295782 R similar to Escherichia coli putative kinase (AAC74584.1); autoinducer-2 (AI-2) kinase complement(4294190..4295782) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240350.1 CDS ydeW NC_016856.1 4295871 4296830 R similar to Escherichia coli putative transcriptional regulator, sorC family (AAC74585.1); putative transcriptional repressor complement(4295871..4296830) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240351.1 CDS STM14_4898 NC_016856.1 4296957 4297091 R hypothetical protein complement(4296957..4297091) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240352.1 CDS ego NC_016856.1 4297086 4298621 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC74586.1); putative ABC-type aldose transport system ATPase component 4297086..4298621 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240353.1 CDS ydeY NC_016856.1 4298615 4299658 D similar to Escherichia coli putative transport system permease protein (AAC74587.1); putative ABC superfamily membrane protein; putative sugar transport protein 4298615..4299658 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240354.1 CDS ydeZ NC_016856.1 4299655 4300656 D similar to Escherichia coli putative transport system permease protein (AAC74588.1); putative ABC superfamily membrane protein; putative sugar transport protein 4299655..4300656 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240355.1 CDS yneA NC_016856.1 4300685 4301707 D similar to Escherichia coli putative LacI-type transcriptional regulator (AAC74589.1); putative ABC superfamily periplasmic protein; putative sugar transport protein 4300685..4301707 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240356.1 CDS yneB NC_016856.1 4301736 4302611 D aldolase 4301736..4302611 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240357.1 CDS yneC NC_016856.1 4302691 4302984 D autoinducer-2 (AI-2) modifying protein LsrG 4302691..4302984 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240358.1 CDS STM14_4905 NC_016856.1 4302994 4303758 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 4302994..4303758 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240359.1 CDS tpiA NC_016856.1 4303850 4304617 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(4303850..4304617) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240360.1 CDS yiiQ NC_016856.1 4304730 4305326 R hypothetical protein complement(4304730..4305326) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240361.1 CDS yiiR NC_016856.1 4305427 4305855 D putative inner membrane protein 4305427..4305855 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240362.1 CDS STM14_4909 NC_016856.1 4305795 4305962 R hypothetical protein complement(4305795..4305962) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240363.1 CDS fpr NC_016856.1 4305962 4306708 R similar to Escherichia coli ferredoxin-NADP reductase (AAC76906.1); ferredoxin-NADP reductase complement(4305962..4306708) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240364.1 CDS glpX NC_016856.1 4306805 4307905 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(4306805..4307905) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240365.1 CDS glpK NC_016856.1 4307927 4309435 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(4307927..4309435) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240366.1 CDS glpF NC_016856.1 4309456 4310301 R similar to Escherichia coli facilitated diffusion of glycerol (AAC76909.1); MIP channel; glycerol diffusion complement(4309456..4310301) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240367.1 CDS STM14_4914 NC_016856.1 4310547 4310666 D hypothetical protein 4310547..4310666 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240368.1 CDS yiiU NC_016856.1 4310700 4310939 D putative cytoplasmic protein 4310700..4310939 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240369.1 CDS STM14_4916 NC_016856.1 4311024 4311164 R hypothetical protein complement(4311024..4311164) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240370.1 CDS menG NC_016856.1 4311161 4311646 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(4311161..4311646) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240371.1 CDS menA NC_016856.1 4311739 4312668 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(4311739..4312668) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240372.1 CDS hslU NC_016856.1 4312735 4314066 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit complement(4312735..4314066) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240373.1 CDS hslV NC_016856.1 4314076 4314606 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(4314076..4314606) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240374.1 CDS ftsN NC_016856.1 4314698 4315672 R similar to Escherichia coli essential cell division protein (AAC76915.1); essential cell division protein complement(4314698..4315672) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240375.1 CDS cytR NC_016856.1 4315766 4316956 R negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR complement(4315766..4316956) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240376.1 CDS priA NC_016856.1 4316946 4319144 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(4316946..4319144) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240377.1 CDS rpmE NC_016856.1 4319348 4319560 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4319348..4319560 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240378.1 CDS STM14_4925 NC_016856.1 4319606 4320268 R putative outer membrane lipoprotein complement(4319606..4320268) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240379.1 CDS STM14_4926 NC_016856.1 4320469 4322259 R putative arylsulfate sulfotransferase complement(4320469..4322259) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240380.1 CDS metJ NC_016856.1 4322716 4323033 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(4322716..4323033) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240381.1 CDS metB NC_016856.1 4323157 4324458 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4323157..4324458 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240382.1 CDS metL NC_016856.1 4324461 4326893 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4324461..4326893 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240383.1 CDS STM14_4930 NC_016856.1 4327009 4327866 R similar to Escherichia coli putative transport protein (AAC75961.1); putative inner membrane protein complement(4327009..4327866) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240384.1 CDS STM14_4931 NC_016856.1 4327869 4328867 R hypothetical protein complement(4327869..4328867) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240385.1 CDS STM14_4932 NC_016856.1 4329102 4330226 R putative cytoplasmic protein complement(4329102..4330226) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240386.1 CDS STM14_4933 NC_016856.1 4330362 4331918 D similar to Escherichia coli UDP-sugar hydrolase (AAC73582.1); similar to esterase; putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase 4330362..4331918 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240387.1 CDS STM14_4934 NC_016856.1 4332008 4332127 R hypothetical protein complement(4332008..4332127) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240388.1 CDS metF NC_016856.1 4332113 4333003 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4332113..4333003 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240389.1 CDS katG NC_016856.1 4333168 4335348 D peroxidase/catalase HPI (SW:CATA_SALTY); hydroperoxidase 4333168..4335348 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240390.1 CDS yijF NC_016856.1 4335406 4336029 R hypothetical protein complement(4335406..4336029) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240391.1 CDS STM14_4938 NC_016856.1 4336017 4336178 D hypothetical protein 4336017..4336178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240392.1 CDS gldA_2 NC_016856.1 4336288 4337391 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(4336288..4337391) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240393.1 CDS talC NC_016856.1 4337403 4338065 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase complement(4337403..4338065) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240394.1 CDS ptsA NC_016856.1 4338076 4340577 R similar to Escherichia coli PEP-protein phosphotransferase system enzyme I (AAC76929.1); general PTS family; enzyme I; PEP-protein phosphotransferase complement(4338076..4340577) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240395.1 CDS STM14_4943 NC_016856.1 4340772 4340927 R hypothetical protein complement(4340772..4340927) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240396.1 CDS frwC NC_016856.1 4340886 4341965 D FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; putative fructose-like permease EIIC subunit 2 4340886..4341965 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240397.1 CDS frwB NC_016856.1 4341980 4342300 D FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; putative fructose-like phosphotransferase EIIB subunit 2 4341980..4342300 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240398.1 CDS pflD NC_016856.1 4342399 4344696 D involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; putative formate acetyltransferase 2 4342399..4344696 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240399.1 CDS pflC NC_016856.1 4344662 4345540 D similar to Escherichia coli probable pyruvate formate lyase activating enzyme 2 (AAC76934.1); pyruvate formate lyase II activase 4344662..4345540 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240400.1 CDS frwD NC_016856.1 4345542 4345895 D FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; putative fructose-like phosphotransferase EIIB subunit 3 4345542..4345895 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240401.1 CDS yijO NC_016856.1 4345882 4346733 R similar to Escherichia coli putative AraC-type regulatory protein (AAC76936.1); AraC/XylS family; putative regulatory protein complement(4345882..4346733) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240402.1 CDS STM14_4950 NC_016856.1 4346732 4346872 D hypothetical protein 4346732..4346872 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240403.1 CDS STM14_4951 NC_016856.1 4346784 4346900 D hypothetical protein 4346784..4346900 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240404.1 CDS yijP NC_016856.1 4346894 4348627 R hypothetical protein complement(4346894..4348627) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240405.1 CDS STM14_4953 NC_016856.1 4348703 4348810 D hypothetical protein 4348703..4348810 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240406.1 CDS ppc NC_016856.1 4348838 4351489 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(4348838..4351489) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240407.1 CDS argE NC_016856.1 4351858 4353009 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(4351858..4353009) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240408.1 CDS argC NC_016856.1 4353098 4354102 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4353098..4354102 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240409.1 CDS argB NC_016856.1 4354113 4354886 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4354113..4354886 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240410.1 CDS argH NC_016856.1 4355004 4356380 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4355004..4356380 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240411.1 CDS oxyR NC_016856.1 4356665 4357582 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4356665..4357582 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240412.1 CDS udhA NC_016856.1 4357565 4358965 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(4357565..4358965) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240413.1 CDS STM14_4961 NC_016856.1 4358974 4359162 R hypothetical protein complement(4358974..4359162) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240414.1 CDS yijC NC_016856.1 4359164 4359799 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 4359164..4359799 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240415.1 CDS yijD NC_016856.1 4359815 4360174 D hypothetical protein 4359815..4360174 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240416.1 CDS trmA NC_016856.1 4360221 4361321 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(4360221..4361321) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240417.1 CDS btuB NC_016856.1 4361695 4363539 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4361695..4363539 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240418.1 CDS murI NC_016856.1 4363484 4364335 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4363484..4364335 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240419.1 CDS STM14_4970 NC_016856.1 4366598 4366714 D hypothetical protein 4366598..4366714 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240420.1 CDS murB NC_016856.1 4370253 4371281 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4370253..4371281 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240421.1 CDS birA NC_016856.1 4371278 4372240 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 4371278..4372240 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240422.1 CDS coaA NC_016856.1 4372275 4373225 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(4372275..4373225) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240423.1 CDS STM14_4977 NC_016856.1 4373434 4373607 R putative cytoplasmic protein complement(4373434..4373607) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240424.1 CDS tuf_2 NC_016856.1 4374184 4375368 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4374184..4375368 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240425.1 CDS STM14_4983 NC_016856.1 4375382 4375510 D hypothetical protein 4375382..4375510 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240426.1 CDS secE NC_016856.1 4375598 4375981 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4375598..4375981 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240427.1 CDS nusG NC_016856.1 4375983 4376528 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4375983..4376528 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240428.1 CDS rplK NC_016856.1 4376686 4377114 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4376686..4377114 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240429.1 CDS rplA NC_016856.1 4377118 4377822 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4377118..4377822 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240430.1 CDS rplJ NC_016856.1 4378242 4378739 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4378242..4378739 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240431.1 CDS rplL NC_016856.1 4378806 4379171 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4378806..4379171 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240432.1 CDS rpoB NC_016856.1 4379489 4383517 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4379489..4383517 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240433.1 CDS rpoC NC_016856.1 4383594 4387817 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4383594..4387817 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240434.1 CDS STM14_4992 NC_016856.1 4387859 4388182 D putative inner membrane protein 4387859..4388182 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240435.1 CDS STM14_4993 NC_016856.1 4388188 4388532 R putative cytoplasmic protein complement(4388188..4388532) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240436.1 CDS STM14_4994 NC_016856.1 4388486 4388623 R hypothetical protein complement(4388486..4388623) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240437.1 CDS STM14_4995 NC_016856.1 4388644 4388847 D hypothetical protein 4388644..4388847 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240438.1 CDS STM14_4996 NC_016856.1 4388931 4389941 D putative cytoplasmic protein 4388931..4389941 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240439.1 CDS STM14_4997 NC_016856.1 4389931 4390140 D hypothetical protein 4389931..4390140 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240440.1 CDS STM14_4999 NC_016856.1 4390264 4390452 D putative cytoplasmic protein 4390264..4390452 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240441.1 CDS thiH NC_016856.1 4390603 4391736 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(4390603..4391736) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240442.1 CDS thiG NC_016856.1 4391733 4392503 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(4391733..4392503) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240443.1 CDS STM14_5002 NC_016856.1 4392505 4392705 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS complement(4392505..4392705) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240444.1 CDS thiF NC_016856.1 4392686 4393444 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(4392686..4393444) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240445.1 CDS thiE NC_016856.1 4393437 4394072 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase complement(4393437..4394072) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240446.1 CDS thiC NC_016856.1 4394072 4395967 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(4394072..4395967) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240447.1 CDS rsd NC_016856.1 4396331 4396819 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(4396331..4396819) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240448.1 CDS nudC NC_016856.1 4396912 4397685 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4396912..4397685 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240449.1 CDS hemE NC_016856.1 4397726 4398790 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4397726..4398790 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240450.1 CDS nfi NC_016856.1 4398800 4399471 D Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 4398800..4399471 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240451.1 CDS yjaG NC_016856.1 4399513 4400103 D putative cytoplasmic protein 4399513..4400103 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240452.1 CDS hupA NC_016856.1 4400290 4400562 D histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4400290..4400562 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240453.1 CDS yjaH NC_016856.1 4400574 4401266 D putative inner membrane protein 4400574..4401266 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240454.1 CDS zraP NC_016856.1 4401308 4401763 R zinc resistance protein complement(4401308..4401763) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240455.1 CDS hydH NC_016856.1 4401933 4403414 D sensor protein HydA (SW:HYDH_SALTY); in two component regulatory system with HydG; sensor protein ZraS 4401933..4403414 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240456.1 CDS hydG NC_016856.1 4403420 4404745 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4403420..4404745 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240457.1 CDS purD NC_016856.1 4404742 4406031 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(4404742..4406031) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240458.1 CDS purH NC_016856.1 4406043 4407632 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(4406043..4407632) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240459.1 CDS STM14_5018 NC_016856.1 4407683 4407805 D hypothetical protein 4407683..4407805 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240460.1 CDS STM14_5019 NC_016856.1 4407796 4407918 R hypothetical protein complement(4407796..4407918) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240461.1 CDS STM14_5020 NC_016856.1 4407851 4407991 D hypothetical protein 4407851..4407991 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240462.1 CDS STM14_5025 NC_016856.1 4413499 4413630 R hypothetical protein complement(4413499..4413630) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240463.1 CDS STM14_5026 NC_016856.1 4413565 4413795 D hypothetical protein 4413565..4413795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240464.1 CDS yjaB NC_016856.1 4413786 4414223 R hypothetical protein in rrfE-metA intergenic region (SW:YJAB_SALTY); hypothetical protein complement(4413786..4414223) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240465.1 CDS metA NC_016856.1 4414380 4415309 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4414380..4415309 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240466.1 CDS aceB NC_016856.1 4415578 4417179 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4415578..4417179 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240467.1 CDS aceA NC_016856.1 4417211 4418515 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 4417211..4418515 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240468.1 CDS STM14_5031 NC_016856.1 4418519 4418641 D hypothetical protein 4418519..4418641 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240469.1 CDS aceK NC_016856.1 4418617 4420368 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4418617..4420368 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240470.1 CDS STM14_5033 NC_016856.1 4420332 4420739 R putative cytoplasmic protein complement(4420332..4420739) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240471.1 CDS iclR NC_016856.1 4420750 4421574 R regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; IclR family transcriptional regulator complement(4420750..4421574) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240472.1 CDS metH NC_016856.1 4421773 4425561 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4421773..4425561 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240473.1 CDS yjbB NC_016856.1 4425828 4427459 D hypothetical protein in metH-pepE intergenic region (SW:YJBB_SALTY); PNaS family; putative transport protein 4425828..4427459 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240474.1 CDS pepE NC_016856.1 4427535 4428224 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(4427535..4428224) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240475.1 CDS STM14_5038 NC_016856.1 4428296 4428397 D putative cytoplasmic protein 4428296..4428397 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240476.1 CDS STM14_5039 NC_016856.1 4428432 4428971 D similar to Escherichia coli nucleoprotein/polynucleotide-associated enzyme (AAC73457.1); putative cytoplasmic protein 4428432..4428971 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240477.1 CDS yjbC NC_016856.1 4429018 4429887 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4429018..4429887 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240478.1 CDS yjbD NC_016856.1 4429884 4430156 R hypothetical protein complement(4429884..4430156) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240479.1 CDS STM14_5042 NC_016856.1 4430254 4430427 R putative Na+-dependent transporter complement(4430254..4430427) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240480.1 CDS STM14_5044 NC_016856.1 4431313 4431468 D hypothetical protein 4431313..4431468 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240481.1 CDS STM14_5045 NC_016856.1 4431457 4432185 R putative cytoplasmic protein complement(4431457..4432185) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240482.1 CDS STM14_5046 NC_016856.1 4432382 4432672 R putative inner membrane protein complement(4432382..4432672) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240483.1 CDS STM14_5047 NC_016856.1 4432921 4433376 R putative cytoplasmic protein complement(4432921..4433376) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240484.1 CDS STM14_5048 NC_016856.1 4433373 4433978 R putative cytoplasmic protein complement(4433373..4433978) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240485.1 CDS STM14_5049 NC_016856.1 4433983 4435728 R similar to Escherichia coli putative membrane protein (AAC74454.1); putative phage tail fiber protein H complement(4433983..4435728) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240486.1 CDS STM14_5050 NC_016856.1 4435731 4436363 R putative phage tail protein complement(4435731..4436363) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240487.1 CDS STM14_5051 NC_016856.1 4436356 4437471 R putative phage baseplate protein complement(4436356..4437471) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240488.1 CDS STM14_5052 NC_016856.1 4437462 4437821 R putative phage baseplate protein complement(4437462..4437821) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240489.1 CDS STM14_5053 NC_016856.1 4437882 4438004 D hypothetical protein 4437882..4438004 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240490.1 CDS STM14_5054 NC_016856.1 4437985 4439532 R putative inner membrane protein complement(4437985..4439532) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240491.1 CDS STM14_5055 NC_016856.1 4439532 4440461 R similar to Escherichia coli putative glycan biosynthesis enzyme (AAC75410.1); putative phage glycosyltransferase complement(4439532..4440461) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240492.1 CDS STM14_5056 NC_016856.1 4440458 4440820 R putative phage glucose translocase complement(4440458..4440820) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240493.1 CDS STM14_5057 NC_016856.1 4441014 4441139 R hypothetical protein complement(4441014..4441139) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240494.1 CDS STM14_5058 NC_016856.1 4441148 4441870 R putative phage baseplate component complement(4441148..4441870) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240495.1 CDS STM14_5059 NC_016856.1 4441880 4442923 R putative cytoplasmic protein complement(4441880..4442923) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240496.1 CDS STM14_5060 NC_016856.1 4442911 4443120 R putative inner membrane protein complement(4442911..4443120) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240497.1 CDS STM14_5061 NC_016856.1 4443120 4444073 R putative methyl-accepting chemotaxis protein complement(4443120..4444073) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240498.1 CDS STM14_5062 NC_016856.1 4444073 4446427 R putative phage tail protein complement(4444073..4446427) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240499.1 CDS STM14_5063 NC_016856.1 4446524 4446652 R hypothetical protein complement(4446524..4446652) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240500.1 CDS STM14_5065 NC_016856.1 4446981 4447505 R putative phage tail core protein complement(4446981..4447505) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240501.1 CDS STM14_5066 NC_016856.1 4447505 4448932 R putative phage tail sheath protein complement(4447505..4448932) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240502.1 CDS STM14_5067 NC_016856.1 4448922 4449119 R putative cytoplasmic protein complement(4448922..4449119) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240503.1 CDS STM14_5068 NC_016856.1 4449116 4449571 R putative cytoplasmic protein complement(4449116..4449571) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240504.1 CDS STM14_5069 NC_016856.1 4449731 4450045 R putative inner membrane protein complement(4449731..4450045) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240505.1 CDS STM14_5070 NC_016856.1 4450058 4450663 R putative soluble lytic murein transglycosylase complement(4450058..4450663) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240506.1 CDS STM14_5071 NC_016856.1 4450666 4450953 R putative inner membrane protein complement(4450666..4450953) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240507.1 CDS STM14_5072 NC_016856.1 4451435 4451575 D hypothetical protein 4451435..4451575 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240508.1 CDS STM14_5073 NC_016856.1 4451529 4451876 D putative cytoplasmic protein 4451529..4451876 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240509.1 CDS lysC NC_016856.1 4452009 4453358 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III complement(4452009..4453358) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240510.1 CDS pgi NC_016856.1 4453703 4455352 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4453703..4455352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240511.1 CDS yjbE NC_016856.1 4455796 4456038 D putative outer membrane protein 4455796..4456038 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240512.1 CDS yjbF NC_016856.1 4456072 4456740 D putative outer membrane lipoprotein 4456072..4456740 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240513.1 CDS yjbG NC_016856.1 4456737 4457474 D hypothetical protein 4456737..4457474 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240514.1 CDS yjbH NC_016856.1 4457474 4459570 D putative outer membrane lipoprotein 4457474..4459570 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240515.1 CDS yjbA NC_016856.1 4459713 4460123 D phosphate-starvation-inducible protein PsiE 4459713..4460123 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240516.1 CDS malG NC_016856.1 4460289 4461179 R with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease complement(4460289..4461179) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240517.1 CDS malF NC_016856.1 4461194 4462738 R with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein complement(4461194..4462738) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240518.1 CDS STM14_5083 NC_016856.1 4462681 4462857 R hypothetical protein complement(4462681..4462857) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240519.1 CDS STM14_5084 NC_016856.1 4462737 4462877 D hypothetical protein 4462737..4462877 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240520.1 CDS malE NC_016856.1 4462870 4464297 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein complement(4462870..4464297) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240521.1 CDS malK NC_016856.1 4464422 4465531 D with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4464422..4465531 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240522.1 CDS lamB NC_016856.1 4465620 4466978 D porin involved in the transport of maltose and maltodextrins; maltoporin 4465620..4466978 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240523.1 CDS STM14_5088 NC_016856.1 4466972 4467136 D hypothetical protein 4466972..4467136 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240524.1 CDS malM NC_016856.1 4467142 4468059 D maltose operon periplasmic protein precursor (SW:MALM_SALTY); protein of mal regulon; maltose regulon periplasmic protein 4467142..4468059 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240525.1 CDS ubiC NC_016856.1 4468240 4468737 D catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4468240..4468737 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240526.1 CDS ubiA NC_016856.1 4468751 4469623 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4468751..4469623 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240527.1 CDS plsB NC_016856.1 4469722 4472142 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4469722..4472142) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240528.1 CDS dgkA NC_016856.1 4472313 4472681 D similar to Escherichia coli diacylglycerol kinase (AAC77012.1); diacylglycerol kinase 4472313..4472681 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240529.1 CDS lexA NC_016856.1 4472790 4473398 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4472790..4473398 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240530.1 CDS dinF NC_016856.1 4473577 4474902 D similar to Escherichia coli DNA-damage-inducible protein F (AAC77014.1); induced by UV and mitomycin C; SOS and lexA regulon; DNA-damage-inducible SOS response protein 4473577..4474902 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240531.1 CDS STM14_5096 NC_016856.1 4474899 4475012 D putative cytoplasmic protein 4474899..4475012 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240532.1 CDS yjbJ NC_016856.1 4475031 4475243 D unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; putative stress-response protein 4475031..4475243 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240533.1 CDS zur NC_016856.1 4475342 4475857 R Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor complement(4475342..4475857) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240534.1 CDS STM14_5099 NC_016856.1 4476104 4477414 D similar to plasmid R64 TraF; conjugative transfer protein 4476104..4477414 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240535.1 CDS yjbN NC_016856.1 4477502 4478500 D putative TIM-barrel enzyme; possibly dehydrogenases; nifR3 family; tRNA-dihydrouridine synthase A 4477502..4478500 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240536.1 CDS STM14_5101 NC_016856.1 4478537 4478704 D hypothetical protein 4478537..4478704 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240537.1 CDS pspG NC_016856.1 4478668 4478910 D coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4478668..4478910 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240538.1 CDS qor NC_016856.1 4479085 4480068 R similar to Escherichia coli quinone oxidoreductase (AAC77021.1); NADPH-dependent; quinone oxidoreductase complement(4479085..4480068) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240539.1 CDS dnaB NC_016856.1 4480133 4481548 D unwinds double stranded DNA; replicative DNA helicase 4480133..4481548 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240540.1 CDS alr NC_016856.1 4481580 4482659 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4481580..4482659 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240541.2 CDS tyrB NC_016856.1 4482845 4484038 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4482845..4484038 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240542.1 CDS aphA NC_016856.1 4484225 4484938 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4484225..4484938 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240543.1 CDS yjbQ NC_016856.1 4485067 4485483 D putative cytoplasmic protein 4485067..4485483 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240544.1 CDS yjbR NC_016856.1 4485486 4485842 D putative cytoplasmic protein 4485486..4485842 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240545.1 CDS STM14_5110 NC_016856.1 4485843 4486181 R putative inner membrane protein complement(4485843..4486181) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240546.1 CDS STM14_5111 NC_016856.1 4486168 4486623 R putative outer membrane lipoprotein complement(4486168..4486623) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240547.1 CDS uvrA NC_016856.1 4486755 4489580 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(4486755..4489580) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240548.1 CDS STM14_5113 NC_016856.1 4489545 4489661 D putative cytoplasmic protein 4489545..4489661 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240549.2 CDS ssb NC_016856.1 4489828 4490358 D binds to single stranded DNA and PriA helcase facilitate replication restart; single-strand DNA-binding protein 4489828..4490358 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240550.1 CDS STM14_5115 NC_016856.1 4490374 4490565 R hypothetical protein complement(4490374..4490565) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240551.1 CDS STM14_5116 NC_016856.1 4490568 4490723 D hypothetical protein 4490568..4490723 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240552.1 CDS STM14_5117 NC_016856.1 4491399 4492031 D putative inner membrane or exported protein spi4_A (gi|7467268); hypothetical protein 4491399..4492031 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240553.1 CDS STM14_5118 NC_016856.1 4492028 4493416 D hypothetical protein spi4_A (gi|7467268); putative methyl-accepting chemotaxis protein 4492028..4493416 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240554.1 CDS STM14_5119 NC_016856.1 4493406 4494725 D similar to ABC exporter outer membrane component (gi|7467234); putative ABC exporter outer membrane component 4493406..4494725 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240555.1 CDS STM14_5120 NC_016856.1 4494722 4495999 D membrane permease; HlyD secretion protein (gi|7467244); cation efflux pump 4494722..4495999 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240556.1 CDS STM14_5121 NC_016856.1 4496016 4512695 D fusion of two Salmonella typhimurium hypothetical proteins (gi|7467255) and (gi|7467255); may contain rearrangements with respect to similar proteins; putative inner membrane protein 4496016..4512695 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240557.1 CDS STM14_5122 NC_016856.1 4512735 4514801 D similar to leukotoxin expression protein B (gi|7467272); contains an N-terminal double-glycine peptidase domain; putative ABC-type bacteriocin/lantibiotic exporter 4512735..4514801 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240558.1 CDS yjcB NC_016856.1 4515079 4515360 R putative inner membrane protein complement(4515079..4515360) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240559.1 CDS STM14_5124 NC_016856.1 4515420 4515557 D hypothetical protein 4515420..4515557 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240560.1 CDS STM14_5125 NC_016856.1 4515741 4515845 R hypothetical protein complement(4515741..4515845) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240561.1 CDS yjcC NC_016856.1 4515923 4517524 D diguanylate cyclase 4515923..4517524 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240562.1 CDS soxS NC_016856.1 4517512 4517835 R regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS complement(4517512..4517835) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240563.1 CDS soxR NC_016856.1 4517922 4518380 D redox-sensitive transcriptional activator SOXR (SW:SOXR_SALTY); MerR family; contains iron-sulfur center for redox-sensing; redox-sensing transcriptional activator 4517922..4518380 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240564.1 CDS STM14_5129 NC_016856.1 4518503 4518631 R hypothetical protein complement(4518503..4518631) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240565.1 CDS STM14_5130 NC_016856.1 4518673 4519341 D putative glutathione S-transferase 4518673..4519341 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240566.1 CDS STM14_5131 NC_016856.1 4519322 4519456 R hypothetical protein complement(4519322..4519456) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240567.1 CDS STM14_5132 NC_016856.1 4519489 4519611 R hypothetical protein complement(4519489..4519611) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240568.1 CDS yjcD NC_016856.1 4519688 4521037 D xanthine/uracil permease family; hypothetical protein 4519688..4521037 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240569.1 CDS STM14_5134 NC_016856.1 4521030 4521188 R hypothetical protein complement(4521030..4521188) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240570.1 CDS yjcE NC_016856.1 4521187 4522833 D putative CPA1 family; Na/H transport protein 4521187..4522833 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240571.1 CDS STM14_5136 NC_016856.1 4522928 4523815 R similar to Escherichia coli activator; hydrogen peroxide-inducible genes (AAC76943.1); LysR family; putative transcriptional regulator complement(4522928..4523815) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240572.1 CDS STM14_5137 NC_016856.1 4523814 4524329 D LrgA family protein 4523814..4524329 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240573.1 CDS STM14_5138 NC_016856.1 4524322 4525011 D similar to Escherichia coli putative seritonin transporter (AAC75203.1); putative inner membrane protein 4524322..4525011 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240574.1 CDS actP NC_016856.1 4525050 4526699 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(4525050..4526699) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240575.1 CDS yjcH NC_016856.1 4526696 4527085 R putative inner membrane protein complement(4526696..4527085) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240576.1 CDS acs NC_016856.1 4527256 4529214 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(4527256..4529214) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240577.1 CDS STM14_5142 NC_016856.1 4529401 4529547 D putative cytoplasmic protein 4529401..4529547 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240578.1 CDS nrfA NC_016856.1 4529646 4531082 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c nitrite reductase 4529646..4531082 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240579.1 CDS nrfB NC_016856.1 4531194 4531760 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c-type protein NrfB 4531194..4531760 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240580.1 CDS nrfC NC_016856.1 4531757 4532428 D similar to Escherichia coli formate-dependent nitrite reductase; FeS centers (AAC77042.1); putative formate-dependent nitrite reductase 4531757..4532428 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240581.1 CDS nrfD NC_016856.1 4532425 4533381 D similar to Escherichia coli formate-dependent nitrate reductase complex; transmembrane protein (AAC77043.1); putative formate-dependent nitrate reductase 4532425..4533381 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240582.1 CDS nrfE NC_016856.1 4533374 4535596 D similar to Escherichia coli formate-dependent nitrite reductase; possible assembly function (AAD13457.1); involved in attachment of haem c to cytochrome c552; formate-dependent nitrite reductase 4533374..4535596 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240583.1 CDS nrfG NC_016856.1 4535593 4536213 D similar to Escherichia coli protein of formate-dependent nitrite reductase complex (AAD13459.1); involved in attachment of haem c to cytochrome c552; formate-dependent nitrite reductase complex subunit NrfG 4535593..4536213 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240584.1 CDS STM14_5149 NC_016856.1 4536353 4536481 R hypothetical protein complement(4536353..4536481) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240585.1 CDS STM14_5150 NC_016856.1 4536377 4536649 D hypothetical protein 4536377..4536649 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240586.1 CDS gltP NC_016856.1 4536558 4537868 D carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 4536558..4537868 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240587.1 CDS STM14_5152 NC_016856.1 4537849 4538022 D hypothetical protein 4537849..4538022 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240588.1 CDS yjcO NC_016856.1 4538026 4538715 R contains TPR repeats; hypothetical protein complement(4538026..4538715) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240589.1 CDS STM14_5154 NC_016856.1 4538728 4538883 R hypothetical protein complement(4538728..4538883) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240590.1 CDS fdhF NC_016856.1 4538892 4541039 R similar to Escherichia coli selenopolypeptide subunit of formate dehydrogenase H (AAD13462.1); formate dehydrogenase complement(4538892..4541039) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240591.1 CDS lpxO NC_016856.1 4541394 4542302 R putative dioxygenase for lipid synthesis; LpxO (gi|9454389); putative dioxygenase complement(4541394..4542302) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240592.1 CDS phnO NC_016856.1 4542560 4543102 R PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase complement(4542560..4543102) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240593.1 CDS phnB NC_016856.1 4543146 4543589 R hypothetical protein complement(4543146..4543589) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240594.1 CDS phnA NC_016856.1 4543709 4544044 R involved in phosphonate metabolism; hypothetical protein complement(4543709..4544044) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240595.1 CDS STM14_5160 NC_016856.1 4544189 4544284 D hypothetical protein 4544189..4544284 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240596.1 CDS proP NC_016856.1 4544512 4546014 D similar to Escherichia coli low-affinity transport system; proline permease II (AAC77072.1); MFS family; proline/glycine betaine transporter 4544512..4546014 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240597.1 CDS STM14_5162 NC_016856.1 4546069 4546173 D hypothetical protein 4546069..4546173 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240598.1 CDS basS NC_016856.1 4546181 4547251 R sensor protein BasS/PmrB (SW:BASS_SALTY); in two-component regulatory system with BasR; sensor protein BasS/PmrB complement(4546181..4547251) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240599.1 CDS basR NC_016856.1 4547261 4547929 R response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR complement(4547261..4547929) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240600.1 CDS yjdB NC_016856.1 4547926 4549569 R with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; putative cell division protein complement(4547926..4549569) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240601.1 CDS yjdE NC_016856.1 4549703 4551040 R similar to Escherichia coli putative amino acid/amine transport protein; cryptic (AAC77076.1); APC family; arginine:agmatin antiporter complement(4549703..4551040) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240602.1 CDS adiY NC_016856.1 4551180 4551941 R similar to Escherichia coli putative AraC-type regulatory protein (AAC77077.1); AraC/XylS family; activates aidA; transcriptional activator complement(4551180..4551941) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240603.1 CDS STM14_5168 NC_016856.1 4552110 4552238 D hypothetical protein 4552110..4552238 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240604.1 CDS adi NC_016856.1 4552239 4554509 R similar to Escherichia coli biodegradative arginine decarboxylase (AAC77078.1); inducible by acid; catabolic arginine decarboxylase complement(4552239..4554509) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240605.2 CDS melR NC_016856.1 4554739 4555671 R similar to Escherichia coli regulator of melibiose operon (AAC77079.1); AraC/XylS family; DNA-binding transcriptional regulator MelR complement(4554739..4555671) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240606.1 CDS melA NC_016856.1 4555940 4557295 D alpha-galactosidase (SW:AGAL_SALTY); alpha-galactosidase 4555940..4557295 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240607.1 CDS melB NC_016856.1 4557379 4558809 D melibiose carrier protein; thiomethylgalactoside permease; melibiose permease; Na+/Li+ melibiose symporter; melibiosetransporter (SW:MELB_SALTY); GPH family; melibiose:sodium symporter 4557379..4558809 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240608.1 CDS fumB NC_016856.1 4558907 4560553 R similar to Escherichia coli fumarase B; fumarate hydratase class I anaerobic isozyme (AAC77083.1); fumarase B complement(4558907..4560553) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240609.1 CDS dcuB NC_016856.1 4560649 4561989 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter complement(4560649..4561989) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240610.1 CDS STM14_5175 NC_016856.1 4562136 4562402 R putative cytoplasmic protein complement(4562136..4562402) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240611.1 CDS dcuR NC_016856.1 4562719 4563438 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR complement(4562719..4563438) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240612.1 CDS dcuS NC_016856.1 4563435 4565066 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS complement(4563435..4565066) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240613.1 CDS STM14_5178 NC_016856.1 4565422 4567851 D similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); putative anaerobic dimethylsulfoxide reductase subunit A 4565422..4567851 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240614.1 CDS STM14_5179 NC_016856.1 4567865 4568491 D similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative anaerobic dimethylsulfoxide reductase subunit B 4567865..4568491 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240615.1 CDS STM14_5180 NC_016856.1 4568484 4569257 D similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative anaerobic dimethylsulfoxide reductase subunit C 4568484..4569257 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240616.1 CDS STM14_5181 NC_016856.1 4569273 4569926 D similar to Escherichia coli putative oxidoreductase component (AAC74663.1); putative anaerobic dehydrogenase component 4569273..4569926 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240617.1 CDS STM14_5182 NC_016856.1 4570010 4571410 R hypothetical protein complement(4570010..4571410) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240618.1 CDS STM14_5183 NC_016856.1 4571436 4571549 D hypothetical protein 4571436..4571549 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240619.1 CDS STM14_5184 NC_016856.1 4571714 4572619 D putative inner membrane protein 4571714..4572619 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240620.1 CDS STM14_5185 NC_016856.1 4572913 4573182 R hypothetical protein complement(4572913..4573182) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240621.1 CDS STM14_5186 NC_016856.1 4573190 4573405 R putative cytoplasmic protein complement(4573190..4573405) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240622.1 CDS STM14_5187 NC_016856.1 4573428 4573715 R LuxR family; putative regulatory protein complement(4573428..4573715) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240623.1 CDS STM14_5188 NC_016856.1 4573712 4574587 R HilD (gi|4455108); AraC-type; contains putative DNA-binding domain; putative DNA-binding protein complement(4573712..4574587) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240624.1 CDS STM14_5189 NC_016856.1 4574725 4574850 D hypothetical protein 4574725..4574850 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240625.1 CDS STM14_5190 NC_016856.1 4574852 4575073 R putative cytoplasmic protein complement(4574852..4575073) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240626.1 CDS STM14_5191 NC_016856.1 4575390 4575683 D CopG family; putative helix-turn-helix protein; hypothetical protein 4575390..4575683 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240627.1 CDS STM14_5192 NC_016856.1 4575680 4576171 D putative acetyltransferase 4575680..4576171 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240628.1 CDS phoN NC_016856.1 4576419 4577171 R nonspecific acid phosphatase precursor (SW:PHON_SALTY); non-specific acid phosphatase complement(4576419..4577171) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240629.1 CDS STM14_5194 NC_016856.1 4578381 4578758 R ethyl tert-butyl ether degradation EthD complement(4578381..4578758) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240630.1 CDS STM14_5195 NC_016856.1 4578830 4579162 D similar to Escherichia coli putative transcriptional regulator (AAC73589.1); MerR family; putative regulatory protein 4578830..4579162 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240631.1 CDS STM14_5196 NC_016856.1 4579152 4579388 R hypothetical protein complement(4579152..4579388) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240632.1 CDS yjdC NC_016856.1 4579601 4580176 R putative transcriptional regulator complement(4579601..4580176) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240633.1 CDS dipZ NC_016856.1 4580213 4581916 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(4580213..4581916) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240634.1 CDS cutA NC_016856.1 4581892 4582239 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA complement(4581892..4582239) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240635.1 CDS dcuA NC_016856.1 4582360 4583661 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(4582360..4583661) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240636.1 CDS aspA NC_016856.1 4583776 4585212 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(4583776..4585212) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240637.1 CDS STM14_5203 NC_016856.1 4585245 4585367 R hypothetical protein complement(4585245..4585367) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240638.1 CDS fxsA NC_016856.1 4585553 4586029 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4585553..4586029 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240639.1 CDS yjeH NC_016856.1 4586088 4587329 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH complement(4586088..4587329) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240640.1 CDS groES NC_016856.1 4587425 4587898 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4587425..4587898 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240641.1 CDS groEL NC_016856.1 4587942 4589588 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4587942..4589588 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240642.1 CDS STM14_5208 NC_016856.1 4589666 4589833 R hypothetical protein complement(4589666..4589833) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240643.1 CDS yjeI NC_016856.1 4589814 4590185 D putative outer membrane lipoprotein 4589814..4590185 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240644.1 CDS yjeJ NC_016856.1 4590233 4591090 R putative inner membrane protein complement(4590233..4591090) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240645.1 CDS STM14_5211 NC_016856.1 4591089 4591223 D hypothetical protein 4591089..4591223 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240646.1 CDS STM14_5212 NC_016856.1 4591232 4591378 R hypothetical protein complement(4591232..4591378) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240647.1 CDS yjeK NC_016856.1 4591372 4592400 R putative aminomutase complement(4591372..4592400) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240648.1 CDS efp NC_016856.1 4592441 4593007 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4592441..4593007 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240649.1 CDS ecnA NC_016856.1 4593026 4593202 D putative entericidin A precursor 4593026..4593202 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240650.1 CDS ecnB NC_016856.1 4593310 4593456 D entericidin B membrane lipoprotein 4593310..4593456 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240651.1 CDS ecnR NC_016856.1 4593487 4594074 R LuxR family; putative regulatory protein complement(4593487..4594074) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240652.1 CDS sugE NC_016856.1 4594331 4594648 D member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; quaternary ammonium compound-resistance protein SugE 4594331..4594648 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240653.1 CDS blc NC_016856.1 4594665 4595198 R lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc complement(4594665..4595198) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240654.1 CDS frdD NC_016856.1 4595310 4595669 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(4595310..4595669) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240655.1 CDS frdC NC_016856.1 4595680 4596075 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C complement(4595680..4596075) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240656.1 CDS frdB NC_016856.1 4596086 4596820 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(4596086..4596820) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240657.1 CDS frdA NC_016856.1 4596813 4598603 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(4596813..4598603) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240658.1 CDS yjeA NC_016856.1 4598926 4599903 D lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4598926..4599903 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240659.1 CDS STM14_5225 NC_016856.1 4599983 4600087 D hypothetical protein 4599983..4600087 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240660.1 CDS yjeM NC_016856.1 4600129 4601631 D hypothetical protein in poxA-psd intergenic region (SW:YJEM_SALTY); APC family; putative amino-acid transport protein 4600129..4601631 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240661.1 CDS yjeO NC_016856.1 4601683 4601997 D putative inner membrane protein 4601683..4601997 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240662.1 CDS yjeP NC_016856.1 4602064 4605390 R similar to Escherichia coli putative periplasmic binding protein (AAC77119.1); hypothetical protein complement(4602064..4605390) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240663.1 CDS psd NC_016856.1 4605409 4606377 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(4605409..4606377) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240664.1 CDS yjeQ NC_016856.1 4606469 4607521 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(4606469..4607521) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240665.1 CDS orn NC_016856.1 4607628 4608173 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4607628..4608173 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240666.1 CDS STM14_5232 NC_016856.1 4608235 4608975 R similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); putative arginine-binding periplasmic protein complement(4608235..4608975) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240667.1 CDS yjeS NC_016856.1 4610060 4611199 R putative FeS protein complement(4610060..4611199) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240668.1 CDS yjeF NC_016856.1 4611198 4612745 D hypothetical protein 4611198..4612745 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240669.1 CDS yjeE NC_016856.1 4612717 4613178 D possibly involved in cell wall synthesis; putative ATPase 4612717..4613178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240670.1 CDS amiB NC_016856.1 4613195 4614514 D N-acetylmuramoyl-L-alanine amidase AMIB (SW:AMIB_SALTY); a murein hydrolase; N-acetylmuramoyl-l-alanine amidase II 4613195..4614514 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240671.1 CDS mutL NC_016856.1 4614524 4616380 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4614524..4616380 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240672.1 CDS miaA NC_016856.1 4616373 4617323 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4616373..4617323 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240673.1 CDS hfq NC_016856.1 4617406 4617714 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4617406..4617714 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240674.1 CDS hflX NC_016856.1 4617786 4619066 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; putative GTPase HflX 4617786..4619066 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240675.1 CDS hflK NC_016856.1 4619281 4620540 D with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4619281..4620540 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240676.1 CDS hflC NC_016856.1 4620543 4621547 D with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4620543..4621547 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240677.1 CDS yjeT NC_016856.1 4621626 4621823 D putative inner membrane protein 4621626..4621823 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240678.1 CDS STM14_5247 NC_016856.1 4621703 4621933 D hypothetical protein 4621703..4621933 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240679.1 CDS purA NC_016856.1 4621926 4623224 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4621926..4623224 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240680.1 CDS yjeB NC_016856.1 4623431 4623856 D negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4623431..4623856 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240681.1 CDS vacB NC_016856.1 4623894 4626332 D 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 4623894..4626332 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240682.1 CDS yjfH NC_016856.1 4626423 4627154 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4626423..4627154 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240683.1 CDS yjfI NC_016856.1 4627286 4627690 D putative cytoplasmic protein 4627286..4627690 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240684.1 CDS yjfJ NC_016856.1 4627705 4628403 D similar to Escherichia coli putative alpha helical protein (AAC77139.1); IM30; suppresses sigma54-dependent transcription; putative phage shock protein A 4627705..4628403 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240685.1 CDS STM14_5254 NC_016856.1 4628403 4629473 D similar to eukaryotic potassium channels; putative potassium channel 4628403..4629473 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240686.1 CDS yjfK NC_016856.1 4629446 4630129 D putative cytoplasmic protein 4629446..4630129 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240687.1 CDS yjfL NC_016856.1 4630147 4630545 D putative inner membrane protein 4630147..4630545 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240688.1 CDS yjfM NC_016856.1 4630555 4631193 D putative inner membrane protein 4630555..4631193 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240689.1 CDS yjfC NC_016856.1 4631196 4632359 D similar to Escherichia coli putative synthetase/amidase (AAC77143.1); putative glutathionylspermidine synthase 4631196..4632359 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240690.1 CDS aidB NC_016856.1 4632426 4634066 D catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4632426..4634066 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240691.1 CDS yjfN NC_016856.1 4634111 4634431 R putative inner membrane protein complement(4634111..4634431) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240692.1 CDS yjfO NC_016856.1 4634517 4634846 R putative lipoprotein complement(4634517..4634846) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240693.1 CDS yjfP NC_016856.1 4635030 4635779 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4635030..4635779 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240694.1 CDS yjfQ NC_016856.1 4635776 4636531 R negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR complement(4635776..4636531) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240695.1 CDS yjfR NC_016856.1 4636636 4637700 R contains beta-lactamase fold; putative L-ascorbate 6-phosphate lactonase complement(4636636..4637700) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240696.1 CDS ulaA_3 NC_016856.1 4638063 4639460 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4638063..4639460 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240697.1 CDS sgaB NC_016856.1 4639476 4639781 D sga subunit; L-ascorbate-specific enzyme IIB component of PTS 4639476..4639781 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240698.1 CDS ptxA NC_016856.1 4639791 4640255 D similar to Escherichia coli putative PTS system enzyme II A component (AAC77152.1); sga subunit; L-ascorbate-specific enzyme IIA component of PTS 4639791..4640255 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240699.1 CDS ulaD NC_016856.1 4640269 4640919 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4640269..4640919 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240700.1 CDS sgaU NC_016856.1 4640929 4641783 D UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4640929..4641783 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240701.1 CDS sgaE NC_016856.1 4641783 4642469 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4641783..4642469 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240702.1 CDS yjfY NC_016856.1 4642598 4642873 R putative outer membrane protein complement(4642598..4642873) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240703.1 CDS STM14_5272 NC_016856.1 4642797 4642994 R hypothetical protein complement(4642797..4642994) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240704.1 CDS STM14_5273 NC_016856.1 4642921 4643028 D hypothetical protein 4642921..4643028 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240705.1 CDS STM14_5274 NC_016856.1 4643067 4643273 D putative cytoplasmic protein 4643067..4643273 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240706.1 CDS rpsF NC_016856.1 4643344 4643739 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4643344..4643739 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240707.1 CDS priB NC_016856.1 4643746 4644060 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4643746..4644060 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240708.1 CDS rpsR NC_016856.1 4644065 4644292 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4644065..4644292 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240709.1 CDS rplI NC_016856.1 4644334 4644783 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4644334..4644783 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240710.1 CDS yifZ NC_016856.1 4644931 4645857 D putative permease 4644931..4645857 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240711.1 CDS ytfB NC_016856.1 4645907 4646542 R putative cell envelope opacity-associated protein A complement(4645907..4646542) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240712.1 CDS fklB NC_016856.1 4646651 4647382 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4646651..4647382 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240713.1 CDS cycA NC_016856.1 4647678 4649087 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 4647678..4649087 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240714.1 CDS ytfE NC_016856.1 4649199 4649861 R Involved in anaerobic NO protection and iron metabolism; cell morphogenesis/cell wall metabolism regulator complement(4649199..4649861) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240715.1 CDS ytfF NC_016856.1 4649964 4650929 R similar to Escherichia coli putative transmembrane subunit (AAC77167.1); putative cationic amino acid transporter complement(4649964..4650929) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240716.1 CDS ytfG NC_016856.1 4651010 4651858 R similar to Escherichia coli putative oxidoreductase (AAC77168.1); putative reductase complement(4651010..4651858) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240717.1 CDS ytfH NC_016856.1 4651946 4652332 D putative transcriptional regulator 4651946..4652332 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240718.1 CDS cpdB NC_016856.1 4652390 4654333 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein complement(4652390..4654333) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240719.1 CDS STM14_5288 NC_016856.1 4654346 4654567 R hypothetical protein complement(4654346..4654567) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240720.1 CDS cysQ NC_016856.1 4654601 4655341 D CysQ protein (SW:CYSQ_SALTY); affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis; adenosine 3'-phosphate 5'-phosphosulfate 3'(2'),5'-bisphosphate nucleotidase 4654601..4655341 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240721.1 CDS ytfJ NC_016856.1 4655331 4655888 R putative transcriptional regulator complement(4655331..4655888) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240722.1 CDS STM14_5291 NC_016856.1 4655902 4656081 R hypothetical protein complement(4655902..4656081) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240723.1 CDS ytfK NC_016856.1 4656215 4656421 D putative cytoplasmic protein 4656215..4656421 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240724.1 CDS ytfL NC_016856.1 4656506 4657849 R similar to Escherichia coli putative transport protein (AAC77175.1); putative hemolysin-like protein complement(4656506..4657849) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240725.1 CDS msrA NC_016856.1 4658032 4658670 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4658032..4658670) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240726.1 CDS STM14_5295 NC_016856.1 4658725 4658841 D hypothetical protein 4658725..4658841 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240727.1 CDS ytfM NC_016856.1 4658883 4660616 D putative outer membrane protein 4658883..4660616 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240728.1 CDS ytfN NC_016856.1 4660613 4664392 D hypothetical protein 4660613..4664392 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240729.1 CDS ytfP NC_016856.1 4664395 4664739 D putative cytoplasmic protein 4664395..4664739 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240730.1 CDS STM14_5299 NC_016856.1 4664793 4666001 R similar to Escherichia coli D-galactonate transport (AAC76714.1); putative permease complement(4664793..4666001) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240731.1 CDS STM14_5300 NC_016856.1 4665998 4667161 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; putative metallo-dependent hydrolase complement(4665998..4667161) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240732.1 CDS ppa NC_016856.1 4667571 4668101 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(4667571..4668101) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240733.1 CDS fbp NC_016856.1 4668328 4669326 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(4668328..4669326) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240734.1 CDS STM14_5303 NC_016856.1 4669323 4669508 R hypothetical protein complement(4669323..4669508) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240735.1 CDS mpl NC_016856.1 4669501 4670880 D similar to Escherichia coli putative ligase (AAC77190.1); UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4669501..4670880 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240736.1 CDS STM14_5305 NC_016856.1 4670877 4671137 R hypothetical protein complement(4670877..4671137) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240737.1 CDS STM14_5306 NC_016856.1 4671075 4671302 D hypothetical protein 4671075..4671302 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240738.1 CDS STM14_5307 NC_016856.1 4671371 4672204 D putative transcriptional regulator 4671371..4672204 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240739.1 CDS STM14_5308 NC_016856.1 4672255 4673688 R similar to Escherichia coli xylose-proton symport (AAC77001.1); sugar transporter complement(4672255..4673688) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240740.1 CDS STM14_5309 NC_016856.1 4673931 4674110 R hypothetical protein complement(4673931..4674110) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240741.1 CDS STM14_5310 NC_016856.1 4674147 4675583 D similar to Escherichia coli xylose-proton symport (AAC77001.1); sugar transporter 4674147..4675583 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240742.1 CDS STM14_5311 NC_016856.1 4675936 4676745 R putative inner membrane protein complement(4675936..4676745) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240743.1 CDS STM14_5312 NC_016856.1 4676770 4678275 R similar to Escherichia coli phenylacetaldehyde dehydrogenase (AAC74467.1); putative NAD-dependent aldehyde dehydrogenase complement(4676770..4678275) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240744.1 CDS STM14_5313 NC_016856.1 4678291 4678593 R putative cytoplasmic protein complement(4678291..4678593) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240745.1 CDS STM14_5314 NC_016856.1 4678716 4679540 D similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); contains putative DNA-binding domain; putative DNA-binding protein 4678716..4679540 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240746.1 CDS STM14_5315 NC_016856.1 4679544 4679654 D hypothetical protein 4679544..4679654 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240747.1 CDS STM14_5316 NC_016856.1 4679815 4680720 D putative endonuclease 4679815..4680720 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240748.1 CDS STM14_5317 NC_016856.1 4680739 4681749 D similar to Escherichia coli putative dehydrogenase (AAC77236.1); putative dehydrogenase 4680739..4681749 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240749.1 CDS srfJ NC_016856.1 4681846 4683189 D SrfJ (gi|8347262); activated by transcription factor SsrB; similar to Homo sapiens lysosomal glucosyl ceramidase; lysosomal glucosyl ceramidase-like protein 4681846..4683189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240750.1 CDS STM14_5319 NC_016856.1 4683190 4684023 D putative endonuclease 4683190..4684023 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240751.1 CDS STM14_5320 NC_016856.1 4684020 4685186 R similar to Escherichia coli putative transport protein (AAC75382.1); hypothetical protein complement(4684020..4685186) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240752.1 CDS STM14_5321 NC_016856.1 4685247 4687178 R putative carbohydrate kinase complement(4685247..4687178) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240753.1 CDS STM14_5323 NC_016856.1 4689572 4689691 D hypothetical protein 4689572..4689691 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240754.1 CDS STM14_5324 NC_016856.1 4689722 4690744 D similar to Escherichia coli putative virulence factor (AAC74152.1); oxidoreductase family; putative thiamine pyrophosphate-requiring enzyme; myo-inositol 2-dehydrogenase 4689722..4690744 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240755.1 CDS STM14_5325 NC_016856.1 4690817 4692043 D similar to Escherichia coli putative transport protein (AAC77235.1); putative permease 4690817..4692043 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240756.1 CDS STM14_5326 NC_016856.1 4692204 4693019 D putative cytoplasmic protein 4692204..4693019 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240757.1 CDS STM14_5327 NC_016856.1 4693072 4693956 D putative endonuclease 4693072..4693956 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240758.1 CDS yjgA NC_016856.1 4694012 4694563 R similar to Escherichia coli putative alpha helix protein (AAC77191.1); hypothetical protein complement(4694012..4694563) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240759.1 CDS pmbA NC_016856.1 4694659 4696011 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4694659..4696011 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240760.1 CDS cybC NC_016856.1 4696110 4696496 D similar to Escherichia coli cytochrome b562 (AAC77193.1); cytochrome b562 4696110..4696496 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240761.1 CDS STM14_5331 NC_016856.1 4696774 4697112 D nitrogen regulation protein NR(ii) (SW:NTRB_SALTY); putative cytoplasmic protein 4696774..4697112 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240762.1 CDS STM14_5332 NC_016856.1 4697123 4697485 D putative cytoplasmic protein 4697123..4697485 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240763.1 CDS STM14_5333 NC_016856.1 4697485 4697787 D putative cytoplasmic protein 4697485..4697787 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240764.1 CDS STM14_5334 NC_016856.1 4697810 4698586 D putative inner membrane protein 4697810..4698586 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240765.1 CDS STM14_5335 NC_016856.1 4698598 4699242 D putative inner membrane protein 4698598..4699242 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240766.1 CDS STM14_5336 NC_016856.1 4699301 4700434 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4699301..4700434 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240767.1 CDS STM14_5337 NC_016856.1 4700418 4701536 D L-seryl-tRNA selenium transferase; putative selenocysteine synthase 4700418..4701536 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240768.1 CDS STM14_5338 NC_016856.1 4701533 4702273 D 4-hydroxy-2-oxoglutarate aldolase 4701533..4702273 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240769.1 CDS STM14_5339 NC_016856.1 4702290 4704203 D Ntr-type; phosphotransferase system mannitol/fructose-specific IIA component 4702290..4704203 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240770.1 CDS STM14_5340 NC_016856.1 4704281 4704523 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4704281..4704523 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240771.1 CDS STM14_5341 NC_016856.1 4704513 4704797 D putative inner membrane protein 4704513..4704797 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240772.1 CDS nrdG NC_016856.1 4704801 4705265 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(4704801..4705265) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240773.1 CDS nrdD NC_016856.1 4705386 4707524 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(4705386..4707524) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240774.1 CDS STM14_5344 NC_016856.1 4707729 4707899 D hypothetical protein 4707729..4707899 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240775.1 CDS treC NC_016856.1 4707933 4709585 R similar to Escherichia coli trehalase 6-P hydrolase (AAC77196.1); alternative inducer of maltose system; cytoplasmic; trehalose-6-phosphate hydrolase complement(4707933..4709585) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240776.1 CDS STM14_5347 NC_016856.1 4711078 4711185 D hypothetical protein 4711078..4711185 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240777.2 CDS treR NC_016856.1 4711190 4712137 R regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor complement(4711190..4712137) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240778.1 CDS mgtA NC_016856.1 4712521 4715229 D P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4712521..4715229 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240779.1 CDS STM14_5350 NC_016856.1 4715345 4715791 R putative transposase complement(4715345..4715791) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240780.1 CDS yjgF NC_016856.1 4715866 4716252 R putative translation initiation inhibitor complement(4715866..4716252) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240781.1 CDS pyrI NC_016856.1 4716329 4716790 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit complement(4716329..4716790) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240782.1 CDS pyrB NC_016856.1 4716803 4717738 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(4716803..4717738) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240783.1 CDS pyrL NC_016856.1 4717774 4717875 R pyrBI operon leader peptide (attenuator) (SW:LPPY_SALTY); contains a frameshift and premature stop as compared to Escherichia coli pyrBI operon leader peptide; pyrBI operon leader peptide complement(4717774..4717875) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240784.1 CDS STM14_5355 NC_016856.1 4717965 4718453 R similar to Escherichia coli repressor of arg regulon; cer-mediated site specific recombination (AAC76269.1); putative arginine repressor complement(4717965..4718453) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240785.1 CDS STM14_5356 NC_016856.1 4718450 4718566 R hypothetical protein complement(4718450..4718566) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240786.1 CDS STM14_5357 NC_016856.1 4718640 4720043 R similar to Escherichia coli putative S-transferase (AAC75358.1); putative arginine repressor complement(4718640..4720043) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240787.1 CDS STM14_5358 NC_016856.1 4720099 4721103 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(4720099..4721103) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240788.1 CDS STM14_5359 NC_016856.1 4721103 4721225 R hypothetical protein complement(4721103..4721225) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240789.1 CDS STM14_5360 NC_016856.1 4721215 4722147 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(4721215..4722147) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240790.1 CDS STM14_5361 NC_016856.1 4722158 4723378 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(4722158..4723378) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240791.1 CDS STM14_5362 NC_016856.1 4723479 4723670 D hypothetical protein 4723479..4723670 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240792.1 CDS yjgK NC_016856.1 4724054 4724506 D putative cytoplasmic protein 4724054..4724506 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240793.1 CDS argI NC_016856.1 4724580 4725584 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I complement(4724580..4725584) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240794.1 CDS yjgD NC_016856.1 4725750 4726166 D hypothetical 15.7 dda protein in argI-miaE intergenic region (ORF15.6) (SW:YJGD_SALTY); hypothetical protein 4725750..4726166 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240795.1 CDS miaE NC_016856.1 4726178 4726990 D tRNA-hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA (SW:MIAE_SALTY); hydroxylase 4726178..4726990 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240796.1 CDS STM14_5367 NC_016856.1 4727023 4727145 R hypothetical protein complement(4727023..4727145) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240797.1 CDS ytgA NC_016856.1 4727224 4727712 R hypothetical 17.8 kKa protein in miaE 3'region (ORF 17.8) (SW:YTGA_SALTY); putative inner membrane protein complement(4727224..4727712) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240798.1 CDS yjgM NC_016856.1 4727819 4728322 R hypothetical 18.3 kDa protein in miaE 3'region (ORF 18.3) (SW:YJGM_SALTY); putative acetyltransferase complement(4727819..4728322) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240799.1 CDS yjgN NC_016856.1 4728517 4729704 D hypothetical protein in miaE 3'region (ORF x) (SW:YJGN_SALTY); putative inner membrane protein 4728517..4729704 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240800.1 CDS valS NC_016856.1 4729846 4732701 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(4729846..4732701) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240801.1 CDS holC NC_016856.1 4732701 4733144 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(4732701..4733144) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240802.1 CDS pepA NC_016856.1 4733281 4734792 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(4733281..4734792) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240803.1 CDS STM14_5374 NC_016856.1 4734836 4734955 R putative cytoplasmic protein complement(4734836..4734955) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240804.1 CDS yjgP NC_016856.1 4735187 4736287 D putative permease 4735187..4736287 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240805.1 CDS yjgQ NC_016856.1 4736287 4737369 D putative permease 4736287..4737369 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240806.1 CDS idnR NC_016856.1 4737564 4738562 R similar to Escherichia coli L-idonate transcriptional regulator (AAC77221.1); GalR/LacI family; L-idonate regulator complement(4737564..4738562) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240807.1 CDS idnT NC_016856.1 4738626 4739945 R similar to Escherichia coli L-idonate transporter (AAC77222.1); GntP family; L-idonate transport protein complement(4738626..4739945) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240808.1 CDS idnO NC_016856.1 4740007 4740771 R Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase complement(4740007..4740771) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240809.1 CDS idnD NC_016856.1 4740796 4741827 R NAD-binding; L-idonate 5-dehydrogenase complement(4740796..4741827) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240810.1 CDS STM14_5381 NC_016856.1 4741810 4741944 D hypothetical protein 4741810..4741944 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240811.1 CDS idnK NC_016856.1 4742044 4742574 D similar to Escherichia coli gluconate kinase, thermosensitive glucokinase (AAC77225.1); D-gluconate kinase 4742044..4742574 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240812.1 CDS yjgB NC_016856.1 4742602 4743621 R similar to Escherichia coli putative oxidoreductase (AAC77226.1); putative alcohol dehydrogenase complement(4742602..4743621) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240813.1 CDS STM14_5385 NC_016856.1 4744147 4744434 D similar to Escherichia coli putative prophage integrase (AAC75495.1); putative integrase 4744147..4744434 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240814.1 CDS STM14_5386 NC_016856.1 4744796 4748311 D similar to Escherichia coli putative frameshift suppressor (AAC77264.1); superfamily I; putative DNA helicase 4744796..4748311 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240815.1 CDS STM14_5387 NC_016856.1 4748408 4749397 D Mrr; putative restriction endonuclease 4748408..4749397 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240816.1 CDS STM14_5388 NC_016856.1 4749510 4751594 R similar to Escherichia coli DNA-binding, ATP-dependent protease La; heat shock K-protein (AAC73542.1); putative ATP-dependent Lon protease complement(4749510..4751594) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240817.1 CDS STM14_5389 NC_016856.1 4751605 4754202 R putative cytoplasmic protein complement(4751605..4754202) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240818.1 CDS STM14_5390 NC_016856.1 4754205 4755026 R putative cytoplasmic protein complement(4754205..4755026) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240819.1 CDS STM14_5391 NC_016856.1 4755004 4756095 R putative ABC-type sugar/spermidine/putrescine transport system ATPase component complement(4755004..4756095) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240820.1 CDS STM14_5392 NC_016856.1 4756095 4759772 R putative type II restriction enzyme methylase subunit complement(4756095..4759772) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240821.1 CDS STM14_5393 NC_016856.1 4759818 4763459 R putative DNA repair ATPase complement(4759818..4763459) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240822.1 CDS STM14_5394 NC_016856.1 4763471 4764073 R putative cytoplasmic protein complement(4763471..4764073) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240823.1 CDS STM14_5395 NC_016856.1 4764070 4764672 R putative inner membrane protein complement(4764070..4764672) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240824.1 CDS STM14_5396 NC_016856.1 4764865 4765110 R molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4764865..4765110) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240825.1 CDS yeeN NC_016856.1 4765498 4766214 R hypothetical protein complement(4765498..4766214) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240826.1 CDS STM14_5399 NC_016856.1 4766523 4766714 D hypothetical protein 4766523..4766714 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240827.1 CDS yjhP NC_016856.1 4766774 4768405 R similar to Escherichia coli putative methyltransferase (AAC77262.1); putative SAM-dependent methyltransferase complement(4766774..4768405) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240828.1 CDS STM14_5401 NC_016856.1 4768410 4768667 R hypothetical protein complement(4768410..4768667) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240829.1 CDS STM14_5402 NC_016856.1 4768806 4769102 R hypothetical protein complement(4768806..4769102) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240830.1 CDS STM14_5403 NC_016856.1 4769156 4769764 D putative cytoplasmic protein 4769156..4769764 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240831.1 CDS STM14_5404 NC_016856.1 4770016 4771011 D putative inner membrane protein 4770016..4771011 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240832.1 CDS STM14_5405 NC_016856.1 4771287 4772198 D IicA (gi|5616506); putative cytoplasmic protein 4771287..4772198 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240833.1 CDS STM14_5406 NC_016856.1 4772201 4772314 D hypothetical protein 4772201..4772314 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240834.1 CDS STM14_5407 NC_016856.1 4772241 4772357 R hypothetical protein complement(4772241..4772357) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240835.1 CDS STM14_5408 NC_016856.1 4772403 4772864 D putative inner membrane or exported; hypothetical protein 4772403..4772864 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240836.1 CDS STM14_5409 NC_016856.1 4772861 4773535 R putative dienelactone hydrolase complement(4772861..4773535) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240837.1 CDS STM14_5410 NC_016856.1 4773638 4773850 D hypothetical protein 4773638..4773850 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240838.1 CDS uxuR NC_016856.1 4773885 4774658 D regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4773885..4774658 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240839.1 CDS trpS2 NC_016856.1 4774659 4775672 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II complement(4774659..4775672) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240840.1 CDS STM14_5413 NC_016856.1 4775969 4776121 D hypothetical protein 4775969..4776121 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240841.1 CDS STM14_5414 NC_016856.1 4776390 4776920 D putative hyperinvasive locus E 4776390..4776920 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240842.1 CDS STM14_5415 NC_016856.1 4776954 4777076 D hypothetical protein 4776954..4777076 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240843.1 CDS STM14_5416 NC_016856.1 4776976 4777107 R hypothetical protein complement(4776976..4777107) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240844.1 CDS STM14_5417 NC_016856.1 4777159 4777893 D similar to Escherichia coli putative resistance proteins (AAC75879.1); putative aspartate racemase 4777159..4777893 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240845.1 CDS yjiE NC_016856.1 4777899 4778807 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC77283.1); LysR family; putative DNA-binding transcriptional regulator complement(4777899..4778807) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240846.1 CDS iadA NC_016856.1 4778926 4780098 R similar to Escherichia coli isoaspartyl dipeptidase (AAC77284.1); isoaspartyl dipeptidase complement(4778926..4780098) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240847.1 CDS yjiG NC_016856.1 4780111 4780572 R hypothetical protein complement(4780111..4780572) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240848.1 CDS yjiH NC_016856.1 4780569 4781453 R putative inner membrane protein complement(4780569..4781453) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240849.1 CDS yjiJ NC_016856.1 4782113 4783297 R similar to Escherichia coli putative transport protein (AAC77288.1); putative sugar transporter complement(4782113..4783297) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240850.1 CDS STM14_5423 NC_016856.1 4783149 4783325 R hypothetical protein complement(4783149..4783325) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240851.1 CDS yjiN NC_016856.1 4783517 4784788 R putative inner membrane protein complement(4783517..4784788) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240852.1 CDS yjiO NC_016856.1 4784875 4786116 R similar to Escherichia coli putative transport protein (AAC77293.1); MFS family; putative transport protein complement(4784875..4786116) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240853.1 CDS STM14_5426 NC_016856.1 4786173 4786316 R hypothetical protein complement(4786173..4786316) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240854.1 CDS STM14_5427 NC_016856.1 4786386 4786523 D hypothetical protein 4786386..4786523 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240855.1 CDS STM14_5428 NC_016856.1 4786595 4787110 D putative inner membrane protein 4786595..4787110 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240856.1 CDS STM14_5429 NC_016856.1 4787107 4787220 R hypothetical protein complement(4787107..4787220) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240857.1 CDS STM14_5430 NC_016856.1 4787291 4788661 D similar to Escherichia coli putative aldehyde dehydrogenase (AAC74598.1); putative NAD-dependent aldehyde dehydrogenase 4787291..4788661 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240858.1 CDS STM14_5431 NC_016856.1 4788756 4788899 R putative cytoplasmic protein complement(4788756..4788899) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240859.1 CDS yjiS NC_016856.1 4788866 4789030 D putative cytoplasmic protein 4788866..4789030 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240860.1 CDS STM14_5433 NC_016856.1 4789105 4789806 R putative inner membrane protein complement(4789105..4789806) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240861.1 CDS yjiW NC_016856.1 4789880 4790212 R involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE complement(4789880..4790212) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240862.1 CDS STM14_5435 NC_016856.1 4790281 4790412 R hypothetical protein complement(4790281..4790412) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240863.1 CDS hsdS NC_016856.1 4790439 4791848 R S protein; STYSJI specificity protein (SW:T1S_SALTY); specificity determinant for hsdM and hsdR; type I restriction enzyme specificity protein complement(4790439..4791848) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240864.1 CDS hsdM NC_016856.1 4791845 4793434 R type I restriction enzyme STYSJI Mm protein (SW:T1M_SALTY); host modification; DNA methylase M complement(4791845..4793434) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240865.1 CDS hsdR NC_016856.1 4793592 4797101 R restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; type I restriction enzyme EcoKI subunit R complement(4793592..4797101) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240866.1 CDS mrr NC_016856.1 4797299 4798213 D similar to Escherichia coli restriction of methylated adenine (AAC77307.1); restriction of methylated adenine; restriction endonuclease 4797299..4798213 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240867.1 CDS STM14_5440 NC_016856.1 4798305 4798442 D hypothetical protein 4798305..4798442 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240868.1 CDS STM14_5441 NC_016856.1 4798482 4798769 D putative inner membrane protein 4798482..4798769 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240869.1 CDS STM14_5442 NC_016856.1 4798756 4799058 D putative cytoplasmic protein 4798756..4799058 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240870.1 CDS yjiA NC_016856.1 4799133 4800089 R putative GTP-binding protein YjiA complement(4799133..4800089) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240871.1 CDS yjiX NC_016856.1 4800100 4800303 R putative cytoplasmic protein complement(4800100..4800303) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240872.1 CDS yjiY NC_016856.1 4800398 4802548 R similar to Escherichia coli putative carbon starvation protein (AAC77310.1); putative carbon starvation protein complement(4800398..4802548) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240873.1 CDS tsr NC_016856.1 4802915 4804576 D similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); methyl-accepting chemotaxis protein I 4802915..4804576 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240874.1 CDS STM14_5447 NC_016856.1 4804689 4804838 R hypothetical protein complement(4804689..4804838) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240875.1 CDS STM14_5448 NC_016856.1 4804900 4807665 D similar to Escherichia coli psp operon transcriptional activator (AAC74385.1); NtrC family; contains ATPase domain; putative transcriptional regulator 4804900..4807665 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240876.1 CDS STM14_5449 NC_016856.1 4807767 4808189 D similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS permease 4807767..4808189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240877.1 CDS STM14_5450 NC_016856.1 4808204 4808665 D similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS permease 4808204..4808665 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240878.1 CDS STM14_5451 NC_016856.1 4808691 4809470 D similar to Escherichia coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1); putative PTS permease 4808691..4809470 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240879.1 CDS STM14_5452 NC_016856.1 4809460 4810296 D similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative PTS permease 4809460..4810296 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240880.1 CDS STM14_5453 NC_016856.1 4810309 4811370 D similar to Escherichia coli L-glutamine:D-fructose-6-phosphate aminotransferase (AAC76752.1); putative glucosamine-fructose-6-phosphate aminotransferase 4810309..4811370 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240881.1 CDS STM14_5454 NC_016856.1 4811388 4812398 D similar to Escherichia coli putative transport protein (AAC76396.1); putative glucosamine-fructose-6-phosphate aminotransferase 4811388..4812398 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240882.1 CDS STM14_5455 NC_016856.1 4812431 4812535 D hypothetical protein 4812431..4812535 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240883.1 CDS mdoB NC_016856.1 4812532 4814823 R catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I complement(4812532..4814823) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240884.1 CDS yjjA NC_016856.1 4815106 4815567 R similar to Escherichia coli putative glycoprotein/receptor (AAC77316.1); hypothetical protein complement(4815106..4815567) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240885.1 CDS dnaC NC_016856.1 4815625 4816362 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(4815625..4816362) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240886.1 CDS dnaT NC_016856.1 4816365 4816904 R This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein I complement(4816365..4816904) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240887.1 CDS STM14_5460 NC_016856.1 4816997 4817470 R hypothetical protein complement(4816997..4817470) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240888.1 CDS yjjP NC_016856.1 4817461 4818372 R similar to Escherichia coli putative structural protein (AAC77320.1); hypothetical protein complement(4817461..4818372) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240889.1 CDS STM14_5462 NC_016856.1 4818419 4818574 R hypothetical protein complement(4818419..4818574) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240890.1 CDS yjjQ NC_016856.1 4818950 4819675 D similar to Escherichia coli putative regulator (AAC77321.1); LuxR/UhpA family; putative transcriptional regulator 4818950..4819675 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240891.1 CDS bglJ NC_016856.1 4819687 4820310 D regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4819687..4820310 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240892.1 CDS STM14_5465 NC_016856.1 4820361 4820819 R putative cytoplasmic protein complement(4820361..4820819) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240893.1 CDS fhuF NC_016856.1 4820970 4821758 R involved in reduction of ferric iron in cytoplasmic ferrioxamine B; ferric hydroximate transport ferric iron reductase complement(4820970..4821758) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240894.1 CDS STM14_5467 NC_016856.1 4821879 4822943 R contains putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein complement(4821879..4822943) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240895.1 CDS STM14_5468 NC_016856.1 4823006 4823134 D hypothetical protein 4823006..4823134 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240896.1 CDS STM14_5469 NC_016856.1 4823194 4823430 D putative inner membrane protein 4823194..4823430 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240897.1 CDS rsmC NC_016856.1 4823971 4824999 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(4823971..4824999) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240898.1 CDS STM14_5474 NC_016856.1 4824998 4825105 D hypothetical protein 4824998..4825105 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240899.1 CDS holD NC_016856.1 4825102 4825539 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4825102..4825539 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240900.1 CDS rimI NC_016856.1 4825484 4825930 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 4825484..4825930 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240901.1 CDS yjjG NC_016856.1 4825952 4826629 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4825952..4826629 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240902.1 CDS prfC NC_016856.1 4826721 4828310 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4826721..4828310 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240903.1 CDS STM14_5479 NC_016856.1 4828502 4828636 D hypothetical protein 4828502..4828636 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240904.1 CDS osmY NC_016856.1 4828712 4829329 D similar to Escherichia coli hyperosmotically inducible periplasmic protein (AAC77329.1); RpoS-dependent stationary phase gene; hypothetical protein 4828712..4829329 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240905.1 CDS STM14_5481 NC_016856.1 4829440 4829619 D hypothetical protein 4829440..4829619 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240906.1 CDS yjjU NC_016856.1 4829743 4830816 D putative phosphoesterase 4829743..4830816 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240907.1 CDS yjjV NC_016856.1 4830813 4831586 D putative deoxyribonuclease YjjV 4830813..4831586 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240908.1 CDS yjjW NC_016856.1 4831619 4832482 R similar to Escherichia coli putative activating enzyme (AAC77332.1); pyruvate formate lyase-activating enzyme complement(4831619..4832482) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240909.1 CDS yjjI NC_016856.1 4832454 4834004 R hypothetical protein complement(4832454..4834004) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240910.1 CDS STM14_5486 NC_016856.1 4833992 4834120 D hypothetical protein 4833992..4834120 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240911.1 CDS deoC NC_016856.1 4834246 4835043 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4834246..4835043 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240912.1 CDS deoA NC_016856.1 4835059 4836489 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 4835059..4836489 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240913.1 CDS deoB NC_016856.1 4836541 4837764 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4836541..4837764 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240914.1 CDS deoD NC_016856.1 4837974 4838693 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4837974..4838693 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240915.1 CDS STM14_5491 NC_016856.1 4838731 4839303 R putative outer membrane protein complement(4838731..4839303) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240916.1 CDS stjB NC_016856.1 4839300 4841708 R similar to Escherichia coli putative outer membrane protein (AAC76248.1); putative fimbrial usher protein complement(4839300..4841708) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240917.1 CDS stjC NC_016856.1 4841722 4842429 R member of the periplasmic pilus chaperone family of proteins; putative periplasmic chaperone protein complement(4841722..4842429) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240918.1 CDS STM14_5494 NC_016856.1 4842507 4843196 R similar to Escherichia coli putative transcriptional regulator (AAC76251.1); putative outer membrane protein complement(4842507..4843196) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240919.1 CDS STM14_5495 NC_016856.1 4843244 4843933 R similar to Escherichia coli putative transcriptional regulator (AAC76251.1); putative outer membrane protein complement(4843244..4843933) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240920.1 CDS STM14_5496 NC_016856.1 4843995 4844144 D hypothetical protein 4843995..4844144 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240921.1 CDS lplA NC_016856.1 4844246 4845262 R Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A complement(4844246..4845262) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240922.1 CDS smp NC_016856.1 4845296 4845940 R membrane protein; transcribed divergently from serB; hypothetical protein complement(4845296..4845940) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240923.1 CDS serB NC_016856.1 4846057 4847025 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4846057..4847025 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240924.1 CDS radA NC_016856.1 4847109 4848491 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4847109..4848491 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240925.1 CDS nadR NC_016856.1 4848561 4849874 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4848561..4849874 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240926.1 CDS yjjK NC_016856.1 4849992 4851659 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(4849992..4851659) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240927.1 CDS slt NC_016856.1 4851868 4853805 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4851868..4853805 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240928.1 CDS trpR NC_016856.1 4853863 4854189 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4853863..4854189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240929.1 CDS yjjX NC_016856.1 4854291 4854806 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(4854291..4854806) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240930.1 CDS gpmB NC_016856.1 4854855 4855502 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4854855..4855502 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240931.1 CDS rob NC_016856.1 4855499 4856368 R similar to Escherichia coli right origin-binding protein (AAC77349.1); AraC/XylS family; transcriptional regulator complement(4855499..4856368) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240932.1 CDS creA NC_016856.1 4856580 4857053 D hypothetical protein 4856580..4857053 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240933.1 CDS creB NC_016856.1 4857066 4857755 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4857066..4857755 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240934.1 CDS creC NC_016856.1 4857755 4859179 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4857755..4859179 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240935.1 CDS creD NC_016856.1 4859237 4860586 D similar to Escherichia coli tolerance to colicin E2 (AAC77353.1); hypothetical protein 4859237..4860586 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240936.1 CDS sthE NC_016856.1 4860644 4861729 R putative major fimbrial subunit complement(4860644..4861729) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240937.1 CDS sthD NC_016856.1 4861770 4862327 R similar to Escherichia coli fimbrial morphology (AAC77275.1); putative fimbrial subunit complement(4861770..4862327) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240938.1 CDS sthB NC_016856.1 4862345 4864882 R similar to Escherichia coli putative outer membrane protein; export function (AAC73634.1); putative fimbrial usher protein complement(4862345..4864882) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240939.1 CDS sthA NC_016856.1 4864928 4865611 R similar to Escherichia coli periplasmic chaperone; required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone complement(4864928..4865611) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240940.1 CDS STM14_5516 NC_016856.1 4865682 4866227 R similar to Escherichia coli fimbrial morphology (AAC77274.1); putative fimbrial chaperone complement(4865682..4866227) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240941.1 CDS STM14_5517 NC_016856.1 4866566 4867237 R putative inner membrane protein complement(4866566..4867237) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240942.1 CDS STM14_5518 NC_016856.1 4867622 4867936 R hypothetical protein complement(4867622..4867936) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240943.1 CDS arcA NC_016856.1 4868203 4868919 R similar to Escherichia coli negative response regulator of genes in aerobic pathways with sensors ArcB and CpxA (AAC77354.1); OmpR family; regulates genes in aerobic pathways; two-component response regulator complement(4868203..4868919) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240944.1 CDS yjjY NC_016856.1 4869015 4869155 D putative inner membrane protein 4869015..4869155 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YP_005240945.1 CDS lasT NC_016856.1 4869555 4870241 D member of the SPOUT superfamily of methyltransferases; putative RNA methyltransferase 4869555..4870241 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0294 tRNA ileV NC_016856.1 291490 291566 D tRNA-Ile 291490..291566 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0295 tRNA alaV NC_016856.1 291676 291751 D tRNA-Ala 291676..291751 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0299 tRNA aspU NC_016856.1 295528 295604 D tRNA-Asp 295528..295604 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0311 tRNA aspV NC_016856.1 304967 305043 D tRNA-Asp 304967..305043 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0380 tRNA thrW NC_016856.1 369481 369556 D tRNA-Thr 369481..369556 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0646 tRNA argU NC_016856.1 614252 614328 D tRNA-Arg 614252..614328 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0653 tRNA STM14_0653 NC_016856.1 618678 618750 D tRNA-OTHER 618678..618750 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0784 tRNA glnX NC_016856.1 738505 738579 R tRNA-Gln complement(738505..738579) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0785 tRNA glnV NC_016856.1 738623 738697 R tRNA-Gln complement(738623..738697) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0786 tRNA metU NC_016856.1 738744 738820 R tRNA-Met complement(738744..738820) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0787 tRNA glnW NC_016856.1 738836 738910 R tRNA-Gln complement(738836..738910) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0788 tRNA glnU NC_016856.1 738946 739020 R tRNA-Gln complement(738946..739020) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0789 tRNA leuW NC_016856.1 739044 739128 R tRNA-Leu complement(739044..739128) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0790 tRNA metT NC_016856.1 739137 739213 R tRNA-Met complement(739137..739213) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0874 tRNA lysT NC_016856.1 819275 819350 D tRNA-Lys 819275..819350 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0875 tRNA valT NC_016856.1 819482 819557 D tRNA-Val 819482..819557 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0876 tRNA lysW NC_016856.1 819561 819636 D tRNA-Lys 819561..819636 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0877 tRNA lysY NC_016856.1 819686 819761 D tRNA-Lys 819686..819761 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0878 tRNA lysZ NC_016856.1 819896 819971 D tRNA-Lys 819896..819971 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_1071 tRNA serW NC_016856.1 985772 985859 R tRNA-Ser complement(985772..985859) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_1231 tRNA serT NC_016856.1 1133666 1133753 D tRNA-Ser 1133666..1133753 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_1297 tRNA serX NC_016856.1 1182903 1182990 R tRNA-Ser complement(1182903..1182990) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_1503 tRNA STM14_1503 NC_016856.1 1343189 1343265 D tRNA-Arg 1343189..1343265 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_1522 tRNA STM14_1522 NC_016856.1 1355627 1355703 D tRNA-Arg 1355627..1355703 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_1720 tRNA valW NC_016856.1 1511610 1511686 R tRNA-Val complement(1511610..1511686) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_1721 tRNA valV NC_016856.1 1511710 1511786 R tRNA-Val complement(1511710..1511786) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2124 tRNA tyrT NC_016856.1 1863258 1863342 D tRNA-Tyr 1863258..1863342 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2126 tRNA tyrV NC_016856.1 1863547 1863631 D tRNA-Tyr 1863547..1863631 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2360 tRNA leuZ NC_016856.1 2046767 2046853 R tRNA-Leu complement(2046767..2046853) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2361 tRNA cysT NC_016856.1 2046865 2046938 R tRNA-Cys complement(2046865..2046938) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2362 tRNA glyW NC_016856.1 2046991 2047066 R tRNA-Gly complement(2046991..2047066) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2426 tRNA serU NC_016856.1 2093578 2093639 R tRNA-Ser complement(2093578..2093639) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2486 tRNA asnT_1 NC_016856.1 2134800 2134875 D tRNA-Asn 2134800..2134875 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2488 tRNA asnT_2 NC_016856.1 2135770 2135845 D tRNA-Asn 2135770..2135845 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2499 tRNA asnW NC_016856.1 2145712 2145787 R tRNA-Asn complement(2145712..2145787) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2502 tRNA asnU NC_016856.1 2147545 2147620 D tRNA-Asn 2147545..2147620 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2755 tRNA proL NC_016856.1 2382307 2382383 D tRNA-Pro 2382307..2382383 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2945 tRNA argW NC_016856.1 2557376 2557450 D tRNA-Arg 2557376..2557450 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2965 tRNA alaX NC_016856.1 2580490 2580565 R tRNA-Ala complement(2580490..2580565) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2966 tRNA alaW NC_016856.1 2580608 2580683 R tRNA-Ala complement(2580608..2580683) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2970 tRNA valU NC_016856.1 2583389 2583464 D tRNA-Val 2583389..2583464 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2971 tRNA valX NC_016856.1 2583510 2583585 D tRNA-Val 2583510..2583585 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2972 tRNA valY NC_016856.1 2583627 2583702 D tRNA-Val 2583627..2583702 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_2973 tRNA lysV NC_016856.1 2583707 2583782 D tRNA-Lys 2583707..2583782 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3200 tRNA STM14_3200 NC_016856.1 2813182 2813258 R tRNA-Arg complement(2813182..2813258) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3257 tRNA gltW NC_016856.1 2853875 2853950 R tRNA-Glu complement(2853875..2853950) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3406 tRNA STM14_3406 NC_016856.1 2990162 2990238 R tRNA-Arg complement(2990162..2990238) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3407 tRNA STM14_3407 NC_016856.1 2990432 2990508 R tRNA-Arg complement(2990432..2990508) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3408 tRNA STM14_3408 NC_016856.1 2990571 2990647 R tRNA-Arg complement(2990571..2990647) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3409 tRNA STM14_3409 NC_016856.1 2990710 2990786 R tRNA-Arg complement(2990710..2990786) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3410 tRNA STM14_3410 NC_016856.1 2990790 2990882 R tRNA-Ser complement(2990790..2990882) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3604 tRNA metZ NC_016856.1 3160873 3160949 D tRNA-Met 3160873..3160949 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3605 tRNA metW NC_016856.1 3160979 3161055 D tRNA-Met 3160979..3161055 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3668 tRNA glyU NC_016856.1 3216561 3216634 R tRNA-Gly complement(3216561..3216634) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3765 tRNA pheV NC_016856.1 3294399 3294474 D tRNA-Phe 3294399..3294474 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3890 tRNA STM14_3890 NC_016856.1 3397257 3397332 D tRNA-Met 3397257..3397332 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3972 tRNA metY NC_016856.1 3471687 3471763 R tRNA-Met complement(3471687..3471763) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3975 tRNA leuU NC_016856.1 3474936 3475022 R tRNA-Leu complement(3474936..3475022) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4097 tRNA thrV NC_016856.1 3580681 3580756 R tRNA-Thr complement(3580681..3580756) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_06610 tRNA STM14_06610 NC_016856.1 3584163 3584238 R tRNA-Glu complement(3584163..3584238) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4381 tRNA proK NC_016856.1 3834110 3834186 R tRNA-Pro complement(3834110..3834186) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4517 tRNA selC NC_016856.1 3962268 3962362 D tRNA-Sec 3962268..3962362 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4687 tRNA gltU NC_016856.1 4115452 4115527 D tRNA-Glu 4115452..4115527 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4691 tRNA aspT NC_016856.1 4118974 4119050 D tRNA-Asp 4118974..4119050 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4692 tRNA trpT NC_016856.1 4119059 4119134 D tRNA-Trp 4119059..4119134 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4729 tRNA argX NC_016856.1 4154599 4154675 D tRNA-Arg 4154599..4154675 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4730 tRNA hisR NC_016856.1 4154730 4154805 D tRNA-His 4154730..4154805 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4731 tRNA leuT NC_016856.1 4154826 4154912 D tRNA-Leu 4154826..4154912 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4732 tRNA proM NC_016856.1 4154955 4155031 D tRNA-Pro 4154955..4155031 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4795 tRNA ileT NC_016856.1 4211361 4211437 D tRNA-Ile 4211361..4211437 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4796 tRNA alaT NC_016856.1 4211549 4211624 D tRNA-Ala 4211549..4211624 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4968 tRNA ileU NC_016856.1 4366326 4366402 D tRNA-Ile 4366326..4366402 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4969 tRNA STM14_4969 NC_016856.1 4366514 4366589 D tRNA-Ala 4366514..4366589 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4978 tRNA thrU NC_016856.1 4373627 4373702 D tRNA-Thr 4373627..4373702 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4979 tRNA tyrU NC_016856.1 4373711 4373795 D tRNA-Tyr 4373711..4373795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4980 tRNA glyT NC_016856.1 4373912 4373986 D tRNA-Gly 4373912..4373986 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4981 tRNA thrT NC_016856.1 4373993 4374068 D tRNA-Thr 4373993..4374068 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5022 tRNA gltV NC_016856.1 4409883 4409958 D tRNA-Glu 4409883..4409958 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5197 tRNA pheR NC_016856.1 4579410 4579485 R tRNA-Phe complement(4579410..4579485) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5233 tRNA glyV NC_016856.1 4609251 4609326 D tRNA-Gly 4609251..4609326 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5234 tRNA glyX NC_016856.1 4609483 4609558 D tRNA-Gly 4609483..4609558 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5235 tRNA glyY NC_016856.1 4609715 4609790 D tRNA-Gly 4609715..4609790 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5384 tRNA leuX NC_016856.1 4743844 4743928 D tRNA-Leu 4743844..4743928 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5470 tRNA leuV NC_016856.1 4823462 4823548 R tRNA-Leu complement(4823462..4823548) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5471 tRNA leuP NC_016856.1 4823580 4823666 R tRNA-Leu complement(4823580..4823666) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5472 tRNA leuQ NC_016856.1 4823694 4823780 R tRNA-Leu complement(4823694..4823780) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0293 rRNA rrsH NC_016856.1 289889 291432 D 16S ribosomal RNA 289889..291432 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0297 rRNA rrlH NC_016856.1 291944 295036 D 23S ribosomal RNA 291944..295036 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_0298 rRNA rrfH NC_016856.1 295219 295340 D 5S ribosomal RNA 295219..295340 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3254 rRNA rrfG NC_016856.1 2850274 2850395 R 5S ribosomal RNA complement(2850274..2850395) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3256 rRNA rrlG NC_016856.1 2850588 2853681 R 23S ribosomal RNA complement(2850588..2853681) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_3258 rRNA rrsG NC_016856.1 2854035 2855577 R 16S ribosomal RNA complement(2854035..2855577) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4096 rRNA rrfF NC_016856.1 3580521 3580642 R 5S ribosomal RNA complement(3580521..3580642) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4098 rRNA rrfD NC_016856.1 3580766 3580887 R 5S ribosomal RNA complement(3580766..3580887) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4099 rRNA rrlD NC_016856.1 3580977 3583968 R 23S ribosomal RNA complement(3580977..3583968) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4100 rRNA rrsD NC_016856.1 3584321 3585864 R 16S ribosomal RNA complement(3584321..3585864) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4686 rRNA rrsC NC_016856.1 4113825 4115368 D 16S ribosomal RNA 4113825..4115368 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4688 rRNA rrlC NC_016856.1 4115721 4118712 D 23S ribosomal RNA 4115721..4118712 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4690 rRNA rrfC NC_016856.1 4118802 4118921 D 5S ribosomal RNA 4118802..4118921 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4794 rRNA rrsA NC_016856.1 4209750 4211291 D 16S ribosomal RNA 4209750..4211291 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4798 rRNA rrlA NC_016856.1 4211805 4214797 D 23S ribosomal RNA 4211805..4214797 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4799 rRNA rrfA NC_016856.1 4214886 4215007 D 5S ribosomal RNA 4214886..4215007 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4967 rRNA rrsB NC_016856.1 4364715 4366258 D 16S ribosomal RNA 4364715..4366258 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4971 rRNA rrlB NC_016856.1 4366770 4369761 D 23S ribosomal RNA 4366770..4369761 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_4972 rRNA rrfB NC_016856.1 4369954 4370074 D 5S ribosomal RNA 4369954..4370074 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5021 rRNA rrsE NC_016856.1 4408256 4409799 D 16S ribosomal RNA 4408256..4409799 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5023 rRNA rrlE NC_016856.1 4410152 4413143 D 23S ribosomal RNA 4410152..4413143 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S STM14_5024 rRNA rrfE NC_016856.1 4413336 4413457 D 5S ribosomal RNA 4413336..4413457 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S