-- dump date   	20140620_054638
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
NP_454617.1	'TALB_ECOLI (316 aa), 95% identity in 316 aa overlap
NP_454622.1	'DNAK_ECOLI (637 aa), 97% identity in 637 aa overlap
NP_454623.1	'DNAJ_ECOLI (375 aa), 95% identity in 378 aa overlap
NP_454679.1	'CAIE_ECOLI (203 aa), 85% identity in 195 aa overlap
NP_454680.1	'CAID_ECOLI (297 aa), 94% identity in 261 aa overlap
NP_454683.1	'CAIA_ECOLI (380 aa), 97% identity in 380 aa overlap
NP_454685.1	'FIXA_ECOLI (256 aa), 88% identity in 256 aa overlap
NP_454687.1	'FIXC_ECOLI (428 aa), 89% identity in 428 aa overlap
NP_454688.1	'FIXX_ECOLI (95 aa), 90% identity in 95 aa overlap
NP_454697.1	'YABF_ECOLI (176 aa), 87% identity in 176 aa overlap
NP_454698.1	'KEFC_ECOLI (620 aa), 90% identity in 619 aa overlap
NP_454713.1	'ARAD_ECOLI (231 aa), 95% identity in 231 aa overlap
NP_454718.1	'YABJ_ECOLI (232 aa), 86% identity in 230 aa overlap
NP_454721.1	'YABN_ECOLI (551 aa), 86% identity in 552 aa overlap
NP_454724.1	'LEU3_ECOLI (362 aa), 94% identity in 362 aa overlap
NP_454739.1	'FTSW_ECOLI (414 aa), 90% identity in 414 aa overlap
NP_454749.1	'MUTT_ECOLI (129 aa), 81% identity in 129 aa overlap
NP_454764.1	'AROP_ECOLI (457 aa), 92% identity in 456 aa overlap
NP_454765.1	'PDHR_ECOLI (254 aa), 97% identity in 254 aa overlap
NP_454796.1	'HTRE_ECOLI (865 aa), 60% identity in 852 aa overlap
NP_454807.1	'FHUC_ECOLI (265 aa), 92% identity in 265 aa overlap
NP_454810.1	'GSA_ECOLI (426 aa), 98% identity in 426 aa overlap
NP_454817.1	'HTRA_ECOLI (474 aa), 92% identity in 475 aa overlap
NP_454829.1	'CDSA_ECOLI (249 aa), 96% identity in 249 aa overlap
NP_454842.1	'DCLZ_ECOLI (713 aa), 91% identity in 712 aa overlap
NP_454856.1	'ABC_ECOLI (343 aa), 95% identity in 343 aa overlap
NP_454912.1	Previously sequenced Salmonella typhi and Salmonella enterica fimbrial subunit proteins TsaA or TcfA TR:Q9XDS4 (EMBL:AB029403) (236 aa) fasta scores: E(): 0, 100.0% id in 236 aa, and to Escherichia coli cs1 fimbrial subunit B precursor CsoB or CooB SW:CSOB_ECOLI (P25731) (238 aa) fasta scores: E(): 5.3e-14, 34.6% id in 205 aa, and to Escherichia coli cfa/i fimbrial subunit A precursor cfaA SW:CFAA_ECOLI (P25732) (206 aa) fasta scores: E(): 1.4e-13, 32.8% id in 189 aa. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site
NP_454913.1	Previously sequenced Salmonella typhi, and Salmonella enterica TsaB or TcfB TR:Q9XDS3 (EMBL:AB029403) (191 aa) fasta scores: E(): 0, 100.0% id in 191 aa, and to Burkholderia cepacia adhesin major subunit pilin Cb1A TR:Q51591 (EMBL:U10244) (184 aa) fasta scores: E(): 1e-21, 44.3% id in 158 aa, and to Escherichia coli cfa/i fimbrial subunit B precursor CfaB SW:FMC1_ECOLI (P02971) (170 aa) fasta scores: E(): 2.8e-16, 40.1% id in 167 aa, and to Escherichia coli cs1 fimbrial subunit a precursor CsoA or CooA SW:FMS1_ECOLI (P25730) (171 aa) fasta scores: E(): 3.5e-15, 36.5% id in 170 aa
NP_454914.1	Previously sequenced Salmonella typhi TsaC TR:Q9XDS2 (EMBL:AB029403) (895 aa) fasta scores: E(): 0, 99.9% id in 895 aa and to Escherichia coli cfa/i fimbrial subunit C precursor CfaC SW:CFAC_ECOLI (P25733) (869 aa) fasta scores: E(): 0, 30.8% id in 869 aa and to Escherichia coli aggregative adherence fimbria II usher protein AafC TR:Q9X4L5 (EMBL:AF114828) (856 aa) fasta scores: E(): 3.1e-05, 24.0% id in 638 aa
NP_454915.1	Previously sequenced Salmonella typhi, and Salmonella enterica TsaD or TcfD TR:Q9XDS1 (EMBL:AB029403) (359 aa) fasta scores: E(): 0, 100.0% id in 359 aa and to Escherichia coli cfa/i fimbrial subunit E CfaE SW:CFAE_ECOLI (P25734) (360 aa) fasta scores: E(): 3.4e-17, 28.2% id in 298 aa and to Escherichia coli CotD precursor TR:Q47119 (EMBL:Z47800) (364 aa) fasta scores: E(): 3.3e-14, 29.3% id in 294 aa
NP_454922.1	'LPCA_ECOLI (192 aa), 97% identity in 192 aa overlap
NP_454932.1	'PHOE_ECOLI (351 aa), 88% identity in 351 aa overlap
NP_454991.1	'PHOB_ECOLI (229 aa), 96% identity in 229 aa overlap
NP_454995.1	'PROY_ECOLI (457 aa), 95% identity in 455 aa overlap
NP_455020.1	Previously sequenced as Salmonella typhimurium phnv TR:P96065 (EMBL:U69493) (265 aa) fasta scores: E(): 0, 98.5% id in 263 aa, and similar to Escherichia coli spermidine/putrescine transport system permease protein PotC potC SW:POTC_ECOLI (P23859) (264 aa) fasta scores: E(): 3.3e-14, 24.8% id in 254 aa; Paralogue of E. coli modB (MODB_ECOLI); Fasta hit to MODB_ECOLI (229 aa), 31% identity in 221 aa overlap'
NP_455021.1	Previously sequenced as Salmonella typhimurium phnU TR:P96064 (EMBL:U69493) (286 aa) fasta scores: E(): 0, 99.0% id in 286 aa, and similar to Chlorella vulgaris probable sulphate transport system permease protein CysT SW:CYST_CHLVU (P56343) (266 aa) fasta scores: E(): 5.5e-15, 33.0% id in 233 aa
NP_455022.1	Previously sequenced as Salmonella typhimurium phnt TR:P96063 (EMBL:U69493) (369 aa) fasta scores: E(): 0, 98.6% id in 369 aa, and similar to Escherichia coli putrescine transport ATP-binding protein PotG potG SW:POTG_ECOLI (P31134) (404 aa) fasta scores: E(): 0, 38.8% id in 361 aa; Fasta hit to AFUC_ECOLI (348 aa), 37% identity in 334 aa overlap; Fasta hit to CYSA_ECOLI (365 aa), 37% identity in 346 aa overlap; Fasta hit to YCJV_ECOLI (322 aa), 40% identity in 323 aa overlap; Fasta hit to YDCT_ECOLI (337 aa), 35% identity in 353 aa overlap; Fasta hit to UGPC_ECOLI (356 aa), 41% identity in 297 aa overlap; Fasta hit to MALK_ECOLI (371 aa), 38% identity in 333 aa overlap; Paralogue of E. coli potG (POTG_ECOLI); Fasta hit to POTG_ECOLI (404 aa), 39% identity in 361 aa overlap'
NP_455023.1	Previously sequenced as Salmonella typhimurium phns TR:P96062 (EMBL:U69493) (337 aa) fasta scores: E(): 0, 99.1% id in 337 aa, and similar to Escherichia coli thiamine-binding periplasmic protein precursor. thiamine-binding periplasmic protein precursor SW:TBPA_ECOLI () (327 aa) fasta scores: E(): 3.2e-08, 25.0% id in 336 aa
NP_455024.1	Previously sequenced as Salmonella typhimurium phnr TR:P96061 (EMBL:U69493) (239 aa) fasta scores: E(): 0, 100.0% id in 239 aa, and to Escherichia coli hypothetical transcriptional regulator in glnA-rbn intergenic region yihL SW:YIHL_ECOLI (P32133) (236 aa) fasta scores: E(): 4.7e-23, 33.0% id in 224 aa; Paralogue of E. coli YIHL_ECOLI; Fasta hit to YIHL_ECOLI (236 aa), 33% identity in 225 aa overlap'
NP_455025.1	Previously sequenced as Salmonella typhimurium phnw TR:P96060 (EMBL:U69493) (367 aa) fasta scores: E(): 0, 99.5% id in 367 aa, and similar to Methanobacterium thermoformicicum aspartate aminotransferase aspC TR:Q59569 (EMBL:D28763) (385 aa) fasta scores: E(): 8.7e-21, 25.1% id in 363 aa
NP_455026.1	'Previously sequenced as Salmonella typhimurium phnx TR:P96059 (EMBL:U69493) (255 aa) fasta scores: E(): 0, 97.9% id in 241 aa, and similar to Pseudomonas aeruginosa 2-phosphonoacetaldehyde hydrolase TR:Q51386 (EMBL:U45309) (275 aa) fasta scores: E(): 0, 54.1% id in 266 aa
NP_455048.1	'DBHB_ECOLI (90 aa), 98% identity in 90 aa overlap
NP_455051.1	'YBAW_ECOLI (132 aa), 95% identity in 132 aa overlap
NP_455060.1	'GLNK_ECOLI (112 aa), 97% identity in 112 aa overlap
NP_455070.1	'HHA_ECOLI (72 aa), 99% identity in 72 aa overlap
NP_455072.1	'ACRB_ECOLI (1049 aa), 95% identity in 1048 aa overlap
NP_455073.1	'ACRA_ECOLI (397 aa), 91% identity in 397 aa overlap
NP_455074.1	'ACRR_ECOLI (215 aa), 87% identity in 214 aa overlap
NP_455088.1	'YBAL_ECOLI (558 aa), 95% identity in 556 aa overlap
NP_455102.1	'YBBA_ECOLI (228 aa), 93% identity in 228 aa overlap
NP_455104.1	Previously sequenced as Salmonella enteritidis outer membrane protein omp TR:Q9S4Z2 (EMBL:AF102556) (377 aa) fasta scores: E(): 0, 99.7% id in 377 aa, and weakly similar to Brucella melitensis porin omp2B TR:Q45311 (EMBL:U26440) (375 aa) fasta scores: E(): 0.074, 25.2% id in 313 aa, and to Aeromonas hydrophila outer membrane protein porin ii ompiI TR:Q9RNA1 (EMBL:AF183931) (351 aa) fasta scores: E(): 0.17, 22.6% id in 393 aa, and to Neisseria meningitidis iron-regulated protein FrpC frpC SW:FRPC_NEIME (P55127) (1829 aa) fasta scores: E(): 0.56, 26.4% id in 356 aa
NP_455112.1	hydroxypyruvate isomerase
NP_455128.1	'CYPB_ECOLI (164 aa), 98% identity in 164 aa overlap
NP_455152.1	'PHEP_ECOLI (458 aa), 93% identity in 462 aa overlap
NP_455162.1	'FEPA_ECOLI (746 aa), 82% identity in 755 aa overlap
NP_455166.1	'FEPC_ECOLI (271 aa), 92% identity in 263 aa overlap
NP_455167.1	'FEPG_ECOLI (330 aa), 87% identity in 329 aa overlap
NP_455168.1	'FEPD_ECOLI (334 aa), 89% identity in 333 aa overlap
NP_455172.1	'ENTE_ECOLI (536 aa), 86% identity in 534 aa overlap
NP_455174.1	'ENTA_ECOLI (248 aa), 90% identity in 247 aa overlap
NP_455178.1	'YBDH_ECOLI (362 aa), 82% identity in 361 aa overlap
NP_455203.1	transcriptional regulator dpia
NP_455206.1	'CSPE_ECOLI (68 aa), 99% identity in 68 aa overlap
NP_455213.1	'DACA_ECOLI (403 aa), 95% identity in 403 aa overlap
NP_455215.1	'RODA_ECOLI (370 aa), 98% identity in 370 aa overlap
NP_455231.1	'GLTL_ECOLI (241 aa), 95% identity in 241 aa overlap
NP_455232.1	'GLTK_ECOLI (224 aa), 96% identity in 223 aa overlap
NP_455233.1	'GLTJ_ECOLI (246 aa), 95% identity in 246 aa overlap
NP_455243.1	'NAGC_ECOLI (406 aa), 94% identity in 406 aa overlap
NP_455254.1	'FUR_ECOLI (148 aa), 99% identity in 146 aa overlap
NP_455255.1	'FLAV_ECOLI (175 aa), 97% identity in 175 aa overlap
NP_455261.1	'POTE_ECOLI (439 aa), 94% identity in 439 aa overlap
NP_455262.1	'KDPE_ECOLI (225 aa), 92% identity in 224 aa overlap
NP_455269.1	'YBGH_ECOLI (493 aa), 88% identity in 493 aa overlap
NP_455286.1	'CISY_ECOLI (427 aa), 96% identity in 427 aa overlap
NP_455290.1	'DHSA_ECOLI (588 aa), 98% identity in 588 aa overlap
NP_455291.1	'DHSB_ECOLI (238 aa), 96% identity in 238 aa overlap
NP_455296.1	'CYDA_ECOLI (522 aa), 96% identity in 522 aa overlap
NP_455297.1	'CYDB_ECOLI (379 aa), 92% identity in 379 aa overlap
NP_455301.1	'TOLQ_ECOLI (230 aa), 98% identity in 230 aa overlap
NP_455311.1	'AROG_ECOLI (350 aa), 95% identity in 350 aa overlap
NP_455324.1	'MODB_ECOLI (229 aa), 95% identity in 229 aa overlap
NP_455325.1	'MODC_ECOLI (352 aa), 90% identity in 352 aa overlap
NP_455334.1	'YBHB_ECOLI (158 aa), 94% identity in 158 aa overlap
NP_455335.1	'BIOA_ECOLI (429 aa), 87% identity in 427 aa overlap
NP_455337.1	'BIOF_ECOLI (384 aa), 80% identity in 384 aa overlap
NP_455358.1	'RHLE_ECOLI (454 aa), 91% identity in 461 aa overlap
NP_455363.1	'GLNQ_ECOLI (240 aa), 95% identity in 240 aa overlap
NP_455364.1	'GLNP_ECOLI (219 aa), 96% identity in 219 aa overlap
NP_455365.1	'GLNH_ECOLI (248 aa), 97% identity in 248 aa overlap
NP_455376.1	'YBIV_ECOLI (271 aa), 89% identity in 269 aa overlap
NP_455379.1	'MOEB_ECOLI (249 aa), 89% identity in 249 aa overlap
NP_455382.1	'YLIA_ECOLI (612 aa), 84% identity in 611 aa overlap
NP_455390.1	'DACC_ECOLI (400 aa), 92% identity in 400 aa overlap
NP_455404.1	'POTF_ECOLI (370 aa), 94% identity in 370 aa overlap
NP_455405.1	'POTG_ECOLI (404 aa), 94% identity in 377 aa overlap
NP_455406.1	'POTH_ECOLI (317 aa), 92% identity in 317 aa overlap
NP_455407.1	'POTI_ECOLI (281 aa), 94% identity in 281 aa overlap
NP_455414.1	'ARTJ_ECOLI (243 aa), 91% identity in 243 aa overlap
NP_455415.1	'ARTM_ECOLI (222 aa), 94% identity in 222 aa overlap
NP_455416.1	'ARTQ_ECOLI (238 aa), 95% identity in 237 aa overlap
NP_455417.1	'ARTI_ECOLI (243 aa), 95% identity in 243 aa overlap
NP_455418.1	'ARTP_ECOLI (242 aa), 95% identity in 242 aa overlap
NP_455425.1	'POXB_ECOLI (572 aa), 94% identity in 572 aa overlap
NP_455435.1	'CLPA_ECOLI (758 aa), 97% identity in 758 aa overlap
NP_455447.1	'LRP_ECOLI (163 aa), 99% identity in 163 aa overlap
NP_455452.1	'DMSA_ECOLI (785 aa), 93% identity in 784 aa overlap
NP_455453.1	'DMSB_ECOLI (204 aa), 97% identity in 204 aa overlap
NP_455454.1	'DMSC_ECOLI (287 aa), 90% identity in 287 aa overlap
NP_455460.1	'PFLB_ECOLI (759 aa), 96% identity in 759 aa overlap
NP_455461.1	'FOCA_ECOLI (285 aa), 95% identity in 285 aa overlap
NP_455469.1	'IHFB_ECOLI (94 aa), 99% identity in 94 aa overlap
NP_455471.1	'MSBA_ECOLI (582 aa), 96% identity in 582 aa overlap
NP_455484.1	'AAT_ECOLI (396 aa), 96% identity in 396 aa overlap
NP_455485.1	'OMPF_ECOLI (362 aa), 59% identity in 369 aa overlap
NP_455536.1	C-terminus similar to bacteriophage Felix 01 hypothetical 28.5 kda protein TR:O80238 (EMBL:AF071201) fasta scores: E(): 1.8e-09, 27.0% id in 230 aa, and N-terminus to bacteriophage Felix 01 hypothetical 16.9 kda protein TR:O80237 (EMBL:AF071201) fasta scores: E(): 0.00098, 31.6% id in 76 aa
NP_455560.1	'UUP_ECOLI (635 aa), 94% identity in 634 aa overlap
NP_455582.1	sulfur transfer protein TusE
NP_455588.1	Salmonella dublin SopB TR:O34105 (EMBL:U90203) fasta scores: E(): 0, 97.0% id in 561 aa and to Salmonella typhimurium invasion protein SigD TR:O30916 (EMBL:AF021817) fasta scores: E(): 0, 97.7% id in 563 aa.
NP_455593.3	'YEDW_ECOLI (239 aa), 74% identity in 226 aa overlap
NP_455607.1	'CBPA_ECOLI (306 aa), 88% identity in 306 aa overlap
NP_455644.1	'MDOG_ECOLI (511 aa), 94% identity in 511 aa overlap
NP_455649.1	'HTRB_ECOLI (306 aa), 83% identity in 306 aa overlap
NP_455672.1	'FLGG_ECOLI (260 aa), 99% identity in 260 aa overlap
NP_455681.1	'RLUC_ECOLI (319 aa), 97% identity in 317 aa overlap
NP_455688.1	'FABG_ECOLI (244 aa), 96% identity in 244 aa overlap
NP_455690.1	'FABF_ECOLI (412 aa), 94% identity in 412 aa overlap
NP_455695.1	'YCFH_ECOLI (265 aa), 93% identity in 265 aa overlap
NP_455696.1	'PTGB_ECOLI (477 aa), 97% identity in 476 aa overlap
NP_455707.1	'YCFS_ECOLI (320 aa), 87% identity in 263 aa overlap. Contains a possible N-terminal signal sequence. Short C-terminal truncation relative E. coli'
NP_455710.1	'YCFV_ECOLI (233 aa), 95% identity in 233 aa overlap
NP_455714.1	'POTD_ECOLI (348 aa), 94% identity in 348 aa overlap
NP_455715.1	'POTC_ECOLI (264 aa), 97% identity in 258 aa overlap
NP_455717.1	'POTB_ECOLI (275 aa), 97% identity in 272 aa overlap
NP_455718.1	'POTA_ECOLI (378 aa), 94% identity in 378 aa overlap
NP_455723.1	'PHOP_ECOLI (223 aa), 93% identity in 223 aa overlap
NP_455736.1	'NARL_ECOLI (216 aa), 95% identity in 216 aa overlap
NP_455737.1	'NARX_ECOLI (598 aa), 86% identity in 598 aa overlap
NP_455738.1	'NARK_ECOLI (463 aa), 95% identity in 462 aa overlap
NP_455739.1	'NARG_ECOLI (1246 aa), 95% identity in 1246 aa overlap
NP_455740.1	'NARH_ECOLI (512 aa), 93% identity in 511 aa overlap
NP_455741.1	'NARJ_ECOLI (236 aa), 88% identity in 236 aa overlap
NP_455742.1	'NARI_ECOLI (225 aa), 92% identity in 225 aa overlap
NP_455748.1	'GALU_ECOLI (301 aa), 97% identity in 301 aa overlap
NP_455749.1	'HNS_ECOLI (136 aa), 95% identity in 136 aa overlap
NP_455752.1	'YCHE_ECOLI (215 aa), 94% identity in 215 aa overlap
NP_455754.1	'OPPB_ECOLI (306 aa), 96% identity in 306 aa overlap
NP_455755.1	'OPPD_ECOLI (337 aa), 92% identity in 337 aa overlap
NP_455756.1	'OPPF_ECOLI (334 aa), 95% identity in 334 aa overlap
NP_455770.1	'YCIG_ECOLI (59 aa), 88% identity in 60 aa overlap
NP_455780.1	'YCIK_ECOLI (252 aa), 89% identity in 253 aa overlap
NP_455784.1	'CYSB_ECOLI (324 aa), 95% identity in 324 aa overlap
NP_455792.1	'OSMB_ECOLI (72 aa), 94% identity in 72 aa overlap
NP_455800.1	'SAPF_ECOLI (268 aa), 97% identity in 268 aa overlap
NP_455801.1	'SAPD_ECOLI (330 aa), 96% identity in 330 aa overlap
NP_455802.1	'SAPC_ECOLI (296 aa), 95% identity in 296 aa overlap
NP_455810.1	'SAPB_ECOLI (321 aa), 92% identity in 321 aa overlap
NP_455811.1	'SAPA_ECOLI (547 aa), 90% identity in 549 aa overlap
NP_455825.1	'MPPA_ECOLI (537 aa), 92% identity in 537 aa overlap
NP_455852.1	'UP03_ECOLI (144 aa), 91% identity in 144 aa overlap
NP_455869.1	'YHDZ_ECOLI (252 aa), 39% identity in 239 aa overlap
NP_455875.1	'YDCG_ECOLI (541 aa), 89% identity in 540 aa overlap
NP_455883.1	'SGCC_ECOLI (437 aa), 95% identity in 437 aa overlap
NP_455885.1	'SGCX_ECOLI (383 aa), 84% identity in 372 aa overlap
NP_455896.1	Identical to Salmonella enteritidis hypothetical 15.2 kDa protein TR:AAF42761 (EMBL:AF128839) (132 aa) fasta scores: E(): 0, 100.0% id in 132 aa, and to Salmonella typhimurium putative membrane protein UgtL TR:Q9X522 (EMBL:AF120672) (132 aa) fasta scores: E(): 0, 98.5% id in 132 aa
NP_455900.3	'YDCW_ECOLI (474 aa), 83% identity in 474 aa overlap
NP_455903.3	Identical to Salmonella typhimurium SrfA TR:AAF74573 (EMBL:AF231758) (399 aa) fasta scores: E(): 0, 100.0% id in 399 aa
NP_455916.1	'NARV_ECOLI (226 aa), 97% identity in 226 aa overlap
NP_455917.1	'NARW_ECOLI (231 aa), 82% identity in 231 aa overlap
NP_455918.1	'NARY_ECOLI (514 aa), 95% identity in 514 aa overlap
NP_455919.1	'NARZ_ECOLI (1245 aa), 90% identity in 1245 aa overlap
NP_455920.1	'NARU_ECOLI (462 aa), 85% identity in 462 aa overlap
NP_455923.1	'ADHP_ECOLI (336 aa), 93% identity in 335 aa overlap
NP_455944.1	'EXUR_ECOLI (258 aa), 31% identity in 231 aa overlap
NP_455946.1	'MBHS_ECOLI (372 aa), 73% identity in 360 aa overlap
NP_455959.1	'MARC_ECOLI (221 aa), 92% identity in 221 aa overlap
NP_455968.1	'DCP_ECOLI (680 aa), 79% identity in 678 aa overlap
NP_455980.1	'P77374 (808 aa), 87% identity in 812 aa overlap
NP_455981.1	'P77783 (808 aa), 92% identity in 810 aa overlap
NP_455990.1	'BID2_ECOLI (231 aa), 93% identity in 229 aa overlap
NP_455991.1	'MLC_ECOLI (406 aa), 91% identity in 386 aa overlap
NP_455992.1	'YNFL_ECOLI (297 aa), 84% identity in 297 aa overlap
NP_455999.1	'YDGG_ECOLI (344 aa), 88% identity in 343 aa overlap
NP_456013.1	Previously sequenced Salmonella typhi GaM protein TR:O87650 (EMBL:AF091717) (176 aa) fasta scores: E(): 0, 100.0% id in 176 aa. Highly similar to Bacteriophage Mu host-nuclease inhibitor protein Gam which protects Mu DNA from the hosts nucleases, SW:VGAM_BPMU () (174 aa) fasta scores: E(): 0, 60.4% id in 169 aa
NP_456059.1	'OMPN_ECOLI (377 aa), 80% identity in 388 aa overlap
NP_456063.1	'FUMC_ECOLI (467 aa), 91% identity in 467 aa overlap
NP_456078.1	'YDGR_ECOLI (500 aa), 90% identity in 499 aa overlap
NP_456088.1	'YDHJ_ECOLI (299 aa), 84% identity in 288 aa overlap
NP_456091.1	'YDHF_ECOLI (298 aa), 89% identity in 298 aa overlap
NP_456099.1	'SODF_ECOLI (192 aa), 95% identity in 192 aa overlap
NP_456100.1	'PURR_ECOLI (340 aa), 96% identity in 340 aa overlap
NP_456101.1	'YDHB_ECOLI (310 aa), 90% identity in 310 aa overlap
NP_456118.1	Region similar to Salmonella typhimurium secretion system apparatus protein SsaK SW:SSAK_SALTY (P74853) (314 aa) fasta scores: E(): 1.1e-21, 85.5% id in 69 aa. Note discrepency in predicted translational start and stop site.
NP_456147.1	'KPY1_ECOLI (470 aa), 96% identity in 470 aa overlap
NP_456148.1	'MULI_ECOLI (78 aa), 96% identity in 78 aa overlap
NP_456164.1	'AROH_ECOLI (348 aa), 90% identity in 348 aa overlap
NP_456169.1	'BTUD_ECOLI (249 aa), 81% identity in 247 aa overlap
NP_456171.1	'BTUC_ECOLI (326 aa), 91% identity in 326 aa overlap
NP_456172.1	'IHFA_ECOLI (99 aa), 99% identity in 99 aa overlap
NP_456185.1	'K6P2_ECOLI (309 aa), 93% identity in 308 aa overlap
NP_456222.1	'G3P1_ECOLI (330 aa), 99% identity in 330 aa overlap
NP_456280.1	C-terminal similarity to Mycobacteriophage L5 gene 2 protein 2 SW:VG02_BPML5 (Q05230) (259 aa) fasta scores: E(): 0.5, 27.7% id in 130 aa
NP_456286.1	'RF1_ECOLI (360 aa), 97% identity in 360 aa overlap
NP_456296.1	'MBHL_ECOLI (597 aa), 91% identity in 597 aa overlap
NP_456298.1	'HYAD_ECOLI (195 aa), 87% identity in 192 aa overlap
NP_456302.1	'APPB_ECOLI (378 aa), 80% identity in 378 aa overlap
NP_456338.3	'PTND_ECOLI (286 aa), 93% identity in 282 aa overlap
NP_456374.1	Contains regions of similarity to bacteriophage tail proteins e.g. Bacteriophage P2 probable tail fiber protein SW:VPH_BPP2 (P26700) (669 aa) fasta scores: E(): 4e-26, 36.4% id in 483 aa, Bacteriophage lambda hypothetical protein orf314 SW:Y314_LAMBD (P03745) (314 aa) fasta scores: E(): 5.8e-07, 31.1% id in 312 aa and Bacteriophage T2 tail fiber protein gp37 SW:VG37_BPT2 (P07067) (1341 aa) fasta scores: E(): 0.00046, 29.5% id in 220 aa
NP_456398.1	Contains regions similar to Haemophilus influenzae hypothetical protein HI1407 SW:YE07_HAEIN (P71385) (447 aa) fasta scores: E(): 6e-10, 30.9% id in 181 aa and Deinococcus radiodurans putative (phage) head morphogenesis protein DRA0097 TR:Q9RZ57 (EMBL:AE001862) (253 aa) fasta scores: E(): 2.7e-09, 34.7% id in 121 aa
NP_456452.1	'EDD_ECOLI (603 aa), 94% identity in 603 aa overlap
NP_456455.1	'KPY2_ECOLI (479 aa), 98% identity in 479 aa overlap
NP_456456.1	Identical to Salmonella typhimurium lipid A acyltransferase msbB TR:Q9ZI82 (EMBL:AF039020) (323 aa) fasta scores: E(): 0, 100.0% id in 323 aa; Orthologue of E. coli msbB (MSBB_ECOLI); Fasta hit to MSBB_ECOLI (323 aa), 93% identity in 323 aa overlap'
NP_456459.1	'ZNUC_ECOLI (251 aa), 95% identity in 251 aa overlap
NP_456466.1	'YEBC_ECOLI (246 aa), 98% identity in 246 aa overlap
NP_456478.1	Identical to Salmonella typhimurium flagellar protein FlhE precursor flhE SW:FLHE_SALTY (P40728) (130 aa) fasta scores: E(): 0, 100.0% id in 130 aa. Shown not to be essential for flagellar formation and function in S. typhimurium. Contains a probable N-terminal signal sequence; Orthologue of E. coli FLHE_ECOLI; Fasta hit to FLHE_ECOLI (130 aa), 75% identity in 130 aa overlap'
NP_456482.1	Identical to Salmonella typhimurium chemotaxis protein CheY cheY SW:CHEY_SALTY (P06657) (128 aa) fasta scores: E(): 0, 100.0% id in 128 aa; Orthologue of E. coli cheY (CHEY_ECOLI); Fasta hit to CHEY_ECOLI (128 aa), 98% identity in 128 aa overlap'
NP_456489.1	Identical to Salmonella typhimurium chemotaxis MotA protein motA SW:MOTA_SALTY (P55891) (295 aa) fasta scores: E(): 0, 99.3% id in 295 aa. Contains hydrophobic, probable membrane-spanning regions; Orthologue of E. coli motA (MOTA_ECOLI); Fasta hit to MOTA_ECOLI (295 aa), 93% identity in 295 aa overlap'
NP_456491.1	Identical to Salmonella typhimurium flagellar transcriptional activator FlhD flhD SW:FLHD_SALTY (O52221) (116 aa) fasta scores: E(): 0, 100.0% id in 116 aa; Orthologue of E. coli flhD (FLHD_ECOLI); Fasta hit to FLHD_ECOLI (119 aa), 89% identity in 119 aa overlap'
NP_456499.1	'FTNA_ECOLI (165 aa), 92% identity in 165 aa overlap
NP_456501.1	'TYRP_ECOLI (403 aa), 89% identity in 403 aa overlap
NP_456518.1	Identical to Salmonella typhimurium FliZ fliZ TR:Q9S1C1 (EMBL:AB010947) (183 aa) fasta scores: E(): 0, 100.0% id in 183 aa; Orthologue of E. coli fliZ (FLIZ_ECOLI); Fasta hit to FLIZ_ECOLI (183 aa), 80% identity in 183 aa overlap'
NP_456520.1	Identical to Salmonella typhi flagellin flaG TR:Q56086 (EMBL:L21912) (506 aa) fasta scores: E(): 0, 100.0% id in 506 aa. Similar to many e.g. Salmonella muenchen flagellin fliC SW:FLIC_SALMU (P06177) (504 aa) fasta scores: E(): 0, 97.2% id in 505 aa; Orthologue of E. coli fliC (FLIC_ECOLI); Fasta hit to FLIC_ECOLI (497 aa), 56% identity in 515 aa overlap'
NP_456523.1	Identical to Salmonella typhimurium flagellar protein FliT fliT SW:FLIT_SALTY (P26611) (122 aa) fasta scores: E(): 0, 100.0% id in 122 aa; Orthologue of E. coli fliT (FLIT_ECOLI); Fasta hit to FLIT_ECOLI (121 aa), 37% identity in 108 aa overlap'
NP_456527.1	'YEDF_ECOLI (77 aa), 100% identity in 77 aa overlap
NP_456531.1	Identical to Salmonella typhimurium flagellar motor switch protein FliG fliG SW:FLIG_SALTY (P15933) (331 aa) fasta scores: E(): 0, 100.0% id in 331 aa; Orthologue of E. coli fliG (FLIG_ECOLI); Fasta hit to FLIG_ECOLI (331 aa), 97% identity in 331 aa overlap'
NP_456534.1	Identical to Salmonella typhimurium flagellar FliJ protein fliJ or flaO or flaS SW:FLIJ_SALTY (P26463) (147 aa) fasta scores: E(): 0, 100.0% id in 147 aa; Orthologue of E. coli fliJ (FLIJ_ECOLI); Fasta hit to FLIJ_ECOLI (147 aa), 88% identity in 147 aa overlap'
NP_456539.1	Identical to Salmonella typhimurium flagellar protein FliO fliO or flbD or flaP SW:FLIO_SALTY (P54699) (125 aa) fasta scores: E(): 0, 100.0% id in 125 aa. Contains hydrophobic, probable membrane-spanning region; Orthologue of E. coli fliO (FLIO_ECOLI); Fasta hit to FLIO_ECOLI (101 aa), 71% identity in 104 aa overlap'
NP_456543.1	Identical to Salmonella typhi TY2 colanic acid capsular biosynthesis activation protein a rcsA SW:RCSA_SALTI (Q56083) (207 aa) fasta scores: E(): 0, 100.0% id in 207 aa; Orthologue of E. coli rcsA (RCSA_ECOLI); Fasta hit to RCSA_ECOLI (207 aa), 87% identity in 207 aa overlap'
NP_456554.1	Identical to Salmonella typhi IMSS-1 outer membrane protein s1 precursor omps1 SW:OMS1_SALTI (Q56110) (394 aa) fasta scores: E(): 0, 100.0% id in 394 aa. Contains a probable N-terminal signal sequence; Fasta hit to OMPC_ECOLI (367 aa), 64% identity in 395 aa overlap; Fasta hit to PHOE_ECOLI (351 aa), 55% identity in 397 aa overlap; Fasta hit to OMPN_ECOLI (377 aa), 69% identity in 397 aa overlap; Fasta hit to OMPF_ECOLI (362 aa), 55% identity in 401 aa overlap; Fasta hit to NMPC_ECOLI (365 aa), 60% identity in 391 aa overlap; Orthologue of E. coli YEDS_ECOLI; Fasta hit to YEDS_ECOLI (397 aa), 77% identity in 399 aa overlap'
NP_456580.1	Identical to Salmonella typhimurium precorrin-4 C11-methyltransferase cbiF SW:CBIF_SALTY (Q05630) (257 aa) fasta scores: E(): 0, 100.0% id in 257 aa
NP_456582.1	Identical to Salmonella typhimurium precorrin-6Y C5,15-methyltransferase [decarboxylating] cbiE SW:CBIE_SALTY (Q05629) (201 aa) fasta scores: E(): 0, 100.0% id in 201 aa
NP_456585.1	Pfam match to entry PF01656 CBIA, Cobyrinic acid a,c-diamide synthase, score 329.30, E-value 4.3e-95
NP_456604.1	Identical to Salmonella typhimurium propanediol utilization protein pduU SW:PDUU_SALTY (Q9XDM7) (116 aa) fasta scores: E(): 0, 100.0% id in 116 aa and Salmonella typhimurium ethanolamine utilization protein eutS SW:EUTS_SALTY (P76557) (111 aa) fasta scores: E(): 3.4e-22, 57.8% id in 109 aa. The Salmonella enterica homologue has been implicated in polyhedral body formation which may protect the cell from toxic metabolites, or protect the dehydratase from oxygen
NP_456612.1	Identical to Salmonella typhimurium thiosulfate reductase electron transport protein PhsB phsB SW:PHSB_SALTY (P37601) (192 aa) fasta scores: E(): 0, 100.0% id in 192 aa; Fasta hit to HYFA_ECOLI (205 aa), 32% identity in 188 aa overlap; Fasta hit to YGFS_ECOLI (162 aa), 36% identity in 160 aa overlap; Fasta hit to HYDN_ECOLI (175 aa), 32% identity in 175 aa overlap; Fasta hit to YSAA_ECOLI (157 aa), 36% identity in 166 aa overlap; Paralogue of E. coli nrfC (NRFC_ECOLI); Fasta hit to NRFC_ECOLI (223 aa), 52% identity in 186 aa overlap'
NP_456615.1	'YEEF_ECOLI (454 aa), 99% identity in 452 aa overlap
NP_456616.1	'YEEY_ECOLI (316 aa), 87% identity in 302 aa overlap
NP_456625.1	Identical to Salmonella typhimurium HisF protein hisF SW:HIS6_SALTY (P10374) (258 aa) fasta scores: E(): 0, 100.0% id in 258 aa; Orthologue of E. coli hisF (HIS6_ECOLI); Fasta hit to HIS6_ECOLI (258 aa), 95% identity in 258 aa overlap'
NP_456628.1	Identical to Salmonella typhimurium UDP-glucose 6-dehydrogenase Ugd or Udg SW:UDG_SALTY (Q04873) (388 aa) fasta scores: E(): 0, 98.5% id in 388 aa; Orthologue of E. coli UDG_ECOLI; Fasta hit to UDG_ECOLI (388 aa), 88% identity in 388 aa overlap'
NP_456637.1	Identical to Salmonella typhi TY2, group D, CDP-tyvelose-2-epimerase rfbE SW:RFBE_SALTI (P14169) (338 aa) fasta scores: E(): 0, 100.0% id in 338 aa
NP_456647.1	Identical to Salmonella typhimurium strain LT2, group B, UTP--glucose-1-phosphate uridylyltransferase galF SW:GALF_SALTY (P26390) (297 aa) fasta scores: E(): 0, 100.0% id in 297 aa; Fasta hit to GALU_ECOLI (301 aa), 59% identity in 289 aa overlap; Orthologue of E. coli galF (GALF_ECOLI); Fasta hit to GALF_ECOLI (297 aa), 94% identity in 297 aa overlap'
NP_456673.1	'YEGN_ECOLI (1040 aa), 92% identity in 1040 aa overlap
NP_456674.1	'YEGO_ECOLI (1025 aa), 92% identity in 1025 aa overlap
NP_456675.1	'YEGB_ECOLI (471 aa), 86% identity in 469 aa overlap
NP_456677.1	'BAER_ECOLI (240 aa), 96% identity in 240 aa overlap
NP_456720.1	'YEHV_ECOLI (243 aa), 85% identity in 243 aa overlap
NP_456724.1	C-terminal half is similar to e.g. Bacillus subtilis choline transport system permease protein opuBB or proW SW:OPBB_BACSU (Q45461; O34670) (217 aa) fasta scores: E(): 4e-13, 32.5% id in 191 aa. Contains hydrophobic, probable membrane-spanning regions; Orthologue of E. coli yehY (YEHY_ECOLI); Fasta hit to YEHY_ECOLI (385 aa), 76% identity in 380 aa overlap'
NP_456747.1	'ISA1_ECOLI (91 aa), 98% identity in 91 aa overlap
NP_456750.1	'GALS_ECOLI (346 aa), 88% identity in 340 aa overlap
NP_456753.1	'YEIG_ECOLI (278 aa), 88% identity in 276 aa overlap
NP_456757.1	'CIRA_ECOLI (663 aa), 88% identity in 663 aa overlap
NP_456758.1	'LYSP_ECOLI (488 aa), 95% identity in 487 aa overlap
NP_456762.1	'PTFB_ECOLI (563 aa), 94% identity in 507 aa overlap.'
NP_456763.1	'K1PF_ECOLI (312 aa), 98% identity in 312 aa overlap
NP_456765.1	'YEIO_ECOLI (393 aa), 90% identity in 393 aa overlap. Contains hydrophobic, probable membrane-spanning regions'
NP_456776.1	'YEJF_ECOLI (529 aa), 87% identity in 529 aa overlap
NP_456791.1	'NARP_ECOLI (215 aa), 88% identity in 215 aa overlap
NP_456794.1	'CCMF_ECOLI (647 aa), 85% identity in 646 aa overlap
NP_456812.1	Identical to Salmonella typhi TY2 outer membrane protein C precursor ompC SW:OMPC_SALTI (P09878) (378 aa) fasta scores: E(): 0, 100.0% id in 378 aa and similar to Salmonella typhimurium outer membrane protein C precursor SW:OMPC_SALTY (O52503) (378 aa) fasta scores: E(): 0, 98.1% id in 378 aa; Fasta hit to PHOE_ECOLI (351 aa), 57% identity in 381 aa overlap; Fasta hit to YEDS_ECOLI (397 aa), 63% identity in 397 aa overlap; Fasta hit to OMPF_ECOLI (362 aa), 58% identity in 386 aa overlap; Fasta hit to NMPC_ECOLI (365 aa), 62% identity in 379 aa overlap; Orthologue of E. coli OMPC_ECOLI; Fasta hit to OMPC_ECOLI (367 aa), 79% identity in 384 aa overlap'
NP_456814.1	Identical to Salmonella typhi TY2 capsular synthesis regulator component B rcsB SW:RCSB_SALTI (Q56127) (216 aa) fasta scores: E(): 0, 100.0% id in 216 aa; Fasta hit to NARP_ECOLI (215 aa), 31% identity in 198 aa overlap; Orthologue of E. coli rcsB (RCSB_ECOLI); Fasta hit to RCSB_ECOLI (216 aa), 99% identity in 216 aa overlap'
NP_456816.1	Identical to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence element IS200 tnpA SW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0, 100.0% id in 152 aa
NP_456817.1	'GYRA_ECOLI (875 aa), 92% identity in 871 aa overlap
NP_456826.1	'GLPT_ECOLI (452 aa), 96% identity in 452 aa overlap
NP_456842.1	Almost identical to Salmonella typhimurium hypothetical protein located within the putative PmrAB regulated operon confering polymyxin resistance via lipid A modification SW:YFBG_SALTY (O52325) (660 aa) fasta scores: E(): 0, 98.5% id in 660 aa. The C-terminal half is similar to e.g rabidopsis thaliana hypothetical protein t23g18.6 TR:Q9SGE0 (EMBL:AC011438) (389 aa) fasta scores: E(): 1.9e-26, 34.0% id in 359 aa. The N-terminal half is similar to Mycobacterium smegmatis ferric exochelin biosynthesis fxbA TR:Q50378 (EMBL:U10425) (360 aa) fasta scores: E(): 1.8e-23, 31.1% id in 251 aa and to formyl-transferases; Orthologue of E. coli YFBG_ECOLI; Fasta hit to YFBG_ECOLI (660 aa), 80% identity in 660 aa overlap'
NP_456847.1	Identical to Salmonella typhimurium polymyxin B resistance protein PmrD SW:PMRD_SALTY (P37589) (85 aa) fasta scores: E(): 0, 100.0% id in 84 aa; Orthologue of E. coli pmrD (PMRD_ECOLI); Fasta hit to PMRD_ECOLI (88 aa), 60% identity in 79 aa overlap'
NP_456850.1	'MENB_ECOLI (285 aa), 97% identity in 285 aa overlap
NP_456854.1	'ELAB_ECOLI (101 aa), 89% identity in 101 aa overlap
NP_456860.1	'NUOL_ECOLI (613 aa), 95% identity in 613 aa overlap
NP_456879.1	'ACKA_ECOLI (400 aa), 98% identity in 400 aa overlap
NP_456895.1	Identical to Salmonella typhimurium histidine transport system permease protein HisQ hisQ SW:HISQ_SALTY (P02913) (228 aa) fasta scores: E(): 0, 100.0% id in 228 aa; Fasta hit to ARTQ_ECOLI (238 aa), 34% identity in 219 aa overlap; Fasta hit to YECS_ECOLI (222 aa), 31% identity in 199 aa overlap; Fasta hit to POTB_ECOLI (275 aa), 30% identity in 220 aa overlap; Orthologue of E. coli hisQ (HISQ_ECOLI); Fasta hit to HISQ_ECOLI (228 aa), 91% identity in 228 aa overlap'
NP_456909.1	'DEDA_ECOLI (219 aa), 97% identity in 219 aa overlap
NP_456914.1	'P77549 (392 aa), 88% identity in 392 aa overlap
NP_456920.1	'FABB_ECOLI (406 aa), 97% identity in 404 aa overlap
NP_456931.1	'YFCZ_ECOLI (94 aa), 94% identity in 94 aa overlap
NP_456937.1	protease VII
NP_456943.1	'DDG_ECOLI (306 aa), 91% identity in 306 aa overlap. Contains hydrophobic, possible membrane-spanning region'
NP_456944.1	Identical to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence element IS200 tnpA SW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0, 100.0% id in 152 aa
NP_456950.1	'YPEC_ECOLI (108 aa), 92% identity in 108 aa overlap
NP_456952.1	'NUPC_ECOLI (400 aa), 98% identity in 400 aa overlap
NP_456954.1	'YFEC_ECOLI (114 aa), 78% identity in 115 aa overlap
NP_456955.1	'YFED_ECOLI (130 aa), 70% identity in 129 aa overlap
NP_456958.1	'XAPB_ECOLI (418 aa), 89% identity in 418 aa overlap
NP_456961.1	'YFER_ECOLI (308 aa), 79% identity in 308 aa overlap
NP_456968.1	'PTHP_ECOLI (85 aa), 100% identity in 85 aa overlap
NP_456969.1	Identical to Salmonella typhimurium pts system, glucose-specific iia component crR SW:PTGA_SALTY (P02908) (168 aa) fasta scores: E(): 0, 100.0% id in 168 aa; Orthologue of E. coli crr (PTGA_ECOLI); Fasta hit to PTGA_ECOLI (168 aa), 98% identity in 168 aa overlap'
NP_456976.1	'CYSA_ECOLI (365 aa), 93% identity in 365 aa overlap
NP_456977.1	'CYSW_ECOLI (291 aa), 97% identity in 291 aa overlap
NP_456978.1	'CYST_ECOLI (277 aa), 95% identity in 277 aa overlap
NP_456991.1	Identical to Salmonella typhimurium ethanolamine utilization protein EutL eutL SW:EUTL_SALTY (Q9ZFU9) (219 aa) fasta scores: E(): 0, 100.0% id in 219 aa. Shows weak similarity to Salmonella typhimurium propanediol utilization protein PduB pduB SW:PDUB_SALTY (P37449) (233 aa) blastp scores: Expect = 2.0e-12, implicated in polyhedral body formation which may protect the cell from toxic metabolites; Orthologue of E. coli EUTL_ECOLI; Fasta hit to EUTL_ECOLI (219 aa), 94% identity in 219 aa overlap'
NP_456997.1	Identical to Salmonella typhimurium eutJ SW:EUTJ_SALTY (P41794) (279 aa) fasta scores: E(): 0, 100.0% id in 279 aa; Orthologue of E. coli eutJ (EUTJ_ECOLI); Fasta hit to EUTJ_ECOLI (278 aa), 89% identity in 278 aa overlap. Shares a region of similarity with EutA and DnaK/FtsA
NP_456999.2	Identical, at the C-terminus, to Salmonella typhimurium ethanolamine utilization protein EutN eutN or cchB SW:EUTN_SALTY (P41792) (99 aa) fasta scores: E(): 0, 100.0% id in 99 aa. Similar, at the C-terminus, to Escherichia coli ethanolamine utilization protein EutN eutN SW:EUTN_ECOLI (P77633) (95 aa) fasta scores: E(): 1.4e-31, 91.6% id in 95 aa
NP_457007.1	'TALA_ECOLI (316 aa), 90% identity in 316 aa overlap
NP_457008.1	'TKT2_ECOLI (667 aa), 92% identity in 666 aa overlap
NP_457014.1	'NARQ_ECOLI (566 aa), 88% identity in 563 aa overlap
NP_457030.1	'YFGD_ECOLI (119 aa), 83% identity in 119 aa overlap
NP_457032.1	'URAA_ECOLI (429 aa), 95% identity in 425 aa overlap
NP_457070.1	'HSCA_ECOLI (616 aa), 94% identity in 616 aa overlap
NP_457077.1	'SUHB_ECOLI (267 aa), 96% identity in 267 aa overlap
NP_457088.1	'CADB_ECOLI (444 aa), 90% identity in 440 aa overlap
NP_457091.1	'GLNB_ECOLI (112 aa), 100% identity in 112 aa overlap
NP_457094.1	C-terminal half shares similarity with e.g. Mycobacterium tuberculosis MtrB mtrB TR:Q50496 (EMBL:U14909) (567 aa) fasta scores: E(): 5.4e-15, 27.6% id in 301 aa and Pseudomonas aeruginosa alginate biosynthesis sensor protein KinB kinB TR:O34206 (EMBL:U97063) (595 aa) fasta scores: E(): 4.3e-14, 30.0% id in 273 aa; Orthologue of E. coli YFHK_ECOLI; Fasta hit to YFHK_ECOLI (496 aa), 87% identity in 460 aa overlap'
NP_457111.1	Identical to Salmonella typhimurium signal peptidase I lepB SW:LEP_SALTY (P23697) (324 aa) fasta scores: E(): 0, 100.0% id in 324 aa; Orthologue of E. coli lepB (LEP_ECOLI); Fasta hit to LEP_ECOLI (324 aa), 94% identity in 324 aa overlap'
NP_457116.1	Identical to Salmonella typhimurium c3181 RNA polymerase sigma-E factor rpoE or sigE SW:RPOE_SALTY (P37401) (191 aa) fasta scores: E(): 0, 100.0% id in 191 aa; Orthologue of E. coli rpoE (RPOE_ECOLI); Fasta hit to RPOE_ECOLI (191 aa), 100% identity in 191 aa overlap'
NP_457117.1	'NADB_ECOLI (540 aa), 90% identity in 540 aa overlap
NP_457119.1	'SRMB_ECOLI (444 aa), 93% identity in 444 aa overlap
NP_457129.1	'KGTP_ECOLI (432 aa), 88% identity in 433 aa overlap
NP_457131.1	'CLPB_ECOLI (857 aa), 97% identity in 857 aa overlap
NP_457133.1	'RLUD_ECOLI (326 aa), 93% identity in 326 aa overlap
NP_457135.1	'YFIA_ECOLI (112 aa), 92% identity in 111 aa overlap
NP_457143.1	Identical to Salmonella typhimurium LT2 50S ribosomal protein l19 rplS SW:RL19_SALTY (P36240) (114 aa) fasta scores: E(): 0, 100.0% id in 114 aa; Orthologue of E. coli rplS (RL19_ECOLI); Fasta hit to RL19_ECOLI (114 aa), 97% identity in 114 aa overlap'
NP_457173.1	Identical to Salmonella typhi AJB70 glucosyl-transferase homolog iroB TR:P96056 (EMBL:U62129) (371 aa) fasta scores: E(): 0, 100.0% id in 371 aa. Similar to glycosyltransferases e.g. Streptomyces argillaceus glycosyltransferase MtmGII TR:O87479 (EMBL:AF077869) (379 aa) fasta scores: E(): 1.4e-24, 32.0% id in 384 aa
NP_457180.1	Identical to Salmonella typhi AJB70 VirK protein TR:O68287 (EMBL:AF029845) (297 aa) fasta scores: E(): 0, 100.0% id in 297 aa. Similar to Salmonella typhimurium SL1344 protein VirK TR:AAB80743 (EMBL:AF020810) (294 aa) fasta scores: E(): 0, 99.3% id in 294 aa; Paralogue of E. coli YBJX_ECOLI; Fasta hit to YBJX_ECOLI (330 aa), 37% identity in 318 aa overlap'
NP_457190.1	'GABD_ECOLI (482 aa), 90% identity in 482 aa overlap
NP_457191.1	'GABT_ECOLI (426 aa), 89% identity in 426 aa overlap
NP_457192.1	'GABP_ECOLI (466 aa), 92% identity in 466 aa overlap
NP_457198.1	Identical to Salmonella typhimurium DNA-binding protein StpA stpA SW:STPA_SALTY (O33800) (133 aa) fasta scores: E(): 0, 100.0% id in 133 aa; Fasta hit to HNS_ECOLI (136 aa), 55% identity in 131 aa overlap; Orthologue of E. coli stpA (STPA_ECOLI); Fasta hit to STPA_ECOLI (134 aa), 84% identity in 134 aa overlap'
NP_457201.1	'YGAM_ECOLI (113 aa), 87% identity in 108 aa overlap
NP_457212.1	'EMRA_ECOLI (390 aa), 90% identity in 390 aa overlap
NP_457213.1	'EMRB_ECOLI (512 aa), 96% identity in 512 aa overlap
NP_457219.1	Identical to Escherichia coli post-transcriptional carbon storage regulator CsrA SW:CSRA_ECOLI (P31803) (61 aa) fasta scores: E(): 9.3e-24, 100.0% id in 61 aa, and similar to Erwinia carotovora global regulatory protein RsmA TR:Q9XB50 (EMBL:L40173) (61 aa) fasta scores: E(): 7e-23, 96.7% id in 61 aa; Orthologue of E. coli csrA (CSRA_ECOLI); Fasta hit to CSRA_ECOLI (61 aa), 100% identity in 61 aa overlap'
NP_457228.1	'SRLD_ECOLI (259 aa), 97% identity in 259 aa overlap
NP_457231.1	'SRLR_ECOLI (257 aa), 95% identity in 257 aa overlap
NP_457237.1	'HYDN_ECOLI (175 aa), 96% identity in 173 aa overlap
NP_457240.1	'HYCH_ECOLI (136 aa), 92% identity in 136 aa overlap
NP_457241.1	'HYCG_ECOLI (255 aa), 97% identity in 255 aa overlap
NP_457242.1	'HYCF_ECOLI (180 aa), 97% identity in 178 aa overlap
NP_457243.1	'HYCE_ECOLI (569 aa), 97% identity in 569 aa overlap
NP_457244.1	'HYCD_ECOLI (307 aa), 91% identity in 307 aa overlap
NP_457245.1	'HYCC_ECOLI (608 aa), 89% identity in 608 aa overlap
NP_457246.1	'HYCB_ECOLI (203 aa), 96% identity in 202 aa overlap
NP_457248.1	'HYPA_ECOLI (116 aa), 87% identity in 115 aa overlap
NP_457253.1	'FHLA_ECOLI (692 aa), 90% identity in 691 aa overlap
NP_457263.1	oxygen-regulated invasion protein
NP_457264.1	oxygen-regulated invasion protein
NP_457270.1	Previously sequenced Salmonella typhi invasion protein IagA which activates expression of cell invasion genes SW:IAGA_SALTI (P43016) (553 aa) fasta scores: E(): 0, 99.8% id in 553 aa
NP_457271.1	Previously characterised Salmonella typhi invasion protein IagB SW:IAGB_SALTI (P43018) (160 aa) fasta scores: E(): 0, 100.0% id in 160 aa. Contains a possible N-terminal signal sequence; Paralogue of E. coli Q46790; Fasta hit to Q46790 (138 aa), 40% identity in 128 aa overlap'
NP_457272.1	Previously characterised Salmonella typhi StpA a protein related to both Yersinia YopE cytotoxin and YopH tyrosine phosphatase TR:P74851 (EMBL:X92546) (543 aa) fasta scores: E(): 0, 100.0% id in 543 aa. Also higly similar to Salmonella typhimurium protein tyrosine phosphatase SptP TR:P74873 (EMBL:U63293) (543 aa) fasta scores: E(): 0, 94.3% id in 543 aa
NP_457275.1	Previously sequenced Salmonella typhi SipF TR:P74850 (EMBL:X92546) (82 aa) fasta scores: E(): 1.2e-32, 98.8% id in 82 aa. Also highly similar to Synechocystis sp acyl carrier protein AcpP SW:ACP_SYNY3 (P20804; P73284) (77 aa) fasta scores: E(): 7.7e-06, 38.0% id in 79 aa
NP_457276.1	Previously partially sequenced Salmonella typhi SipA TR:P74849 (EMBL:X92546) (450 aa) fasta scores: E(): 0, 100.0% id in 450 aa. Also highly similar to Salmonella typhimurium SipA TR:Q56034 (EMBL:U40013) (684 aa) fasta scores: E(): 0, 95.5% id in 685 aa and Shigella flexneri 70 kDa antigen IpaA assiciated with entry into epithelial cells SW:IPAA_SHIFL (P18010) (633 aa) fasta scores: E(): 5.5e-18, 27.3% id in 527 aa
NP_457277.1	Previously sequenced Salmonella typhi SipD TR:Q56136 (EMBL:X82670) (339 aa) fasta scores: E(): 0, 96.2% id in 340 aa. Also highly similar to Shigella flexneri 36 kDa membrane antigenic protein associated with virulence IpaD SW:IPAD_SHIFL (P18013) (332 aa) fasta scores: E(): 2.3e-26, 35.3% id in 346 aa and to Homo sapiens nuclear pore complex protein SW:N214_HUMAN (P35658) (2090 aa) fasta scores: E(): 1.6, 25.3% id in 221 aa
NP_457279.1	Previously sequenced Salmonella typhi SipB TR:Q56134 (EMBL:X82670) (593 aa) fasta scores: E(): 0, 100.0% id in 593 aa. Also highly similar to Shigella flexneri 62 kDa membrane antigen ipaB SW:IPAB_SHIFL (P18011) (580 aa) fasta scores: E(): 0, 41.5% id in 561 aa. Contains possible membrane spanning hydrophobic domains.
NP_457283.1	Previously sequenced Salmonella typhi spaQ TR:Q57533 (EMBL:U29346) (86 aa) fasta scores: E(): 7.5e-31, 100.0% id in 86 aa. Also highly similar to Salmonella typhimurium surface presentation of antigens protein SpaQ SW:SPAQ_SALTY (P40704) (82 aa) fasta scores: E(): 9.8e-29, 98.8% id in 82 aa. Contains possible membrane spanning hydrophobic domains.
NP_457284.1	Previously sequenced Salmonella typhi surface presentation of antigens protein SpaP SW:SPAP_SALTI (Q56023) (224 aa) fasta scores: E(): 0, 100.0% id in 224 aa. Also similar to many others e.g. Shigella flexneri SW:SPAP_SHIFL (P35529) (216 aa) fasta scores: E(): 0, 61.3% id in 222 aa. Contains possible membrane spanning hydrophobic domains.; Paralogue of E. coli fliP (FLIP_ECOLI); Fasta hit to FLIP_ECOLI (245 aa), 35% identity in 220 aa overlap'
NP_457285.1	Previously sequenced Salmonella typhi surface presentation of antigens protein SpaO SW:SPAO_SALTI (Q56022) (303 aa) fasta scores: E(): 0, 100.0% id in 303 aa
NP_457352.1	'RELA_ECOLI (744 aa), 96% identity in 743 aa overlap
NP_457365.1	'SDAC_ECOLI (429 aa), 95% identity in 429 aa overlap
NP_457366.1	'SDHM_ECOLI (455 aa), 94% identity in 455 aa overlap
NP_457368.1	'FUCO_ECOLI (383 aa), 91% identity in 382 aa overlap
NP_457369.1	'FUCA_ECOLI (215 aa), 92% identity in 215 aa overlap
NP_457374.1	'FUCR_ECOLI (243 aa), 89% identity in 235 aa overlap
NP_457377.1	'GCVA_ECOLI (305 aa), 98% identity in 305 aa overlap
NP_457380.1	'YGDK_ECOLI (147 aa), 87% identity in 146 aa overlap
NP_457394.1	Salmonella typhi and Salmonella typhimurium transposase for insertion sequence element IS200 tnpA SW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0, 100.0% id in 152 aa
NP_457401.1	'YGDR_ECOLI (72 aa), 90% identity in 72 aa overlap. Contains a possible N-terminal signal sequence.'
NP_457405.1	Salmonella typhimurium, and Salmonella typhi transposase for insertion sequence element IS200 TnpA SW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0, 100.0% id in 152 aa
NP_457406.1	'GALR_ECOLI (343 aa), 91% identity in 343 aa overlap
NP_457411.1	'ARAE_ECOLI (472 aa), 97% identity in 472 aa overlap
NP_457417.1	'Q46940 (409 aa), 90% identity in 408 aa overlap
NP_457438.1	'SYK1_ECOLI (504 aa), 95% identity in 504 aa overlap
NP_457439.1	a naturally occurring frameshift enables complete translation of RF-2. this provides a mechanism for the protein to regulate its own production.
NP_457442.1	'XERD_ECOLI (298 aa), 95% identity in 298 aa overlap
NP_457443.1	'FLAW_ECOLI (173 aa), 93.6% identity in 173 aa overlap
NP_457476.1	'TKT1_ECOLI (663 aa), 96% identity in 663 aa overlap
NP_457483.1	'GALP_ECOLI (464 aa), 97% identity in 464 aa overlap
NP_457506.1	'NUPG_ECOLI (418 aa), 90% identity in 418 aa overlap
NP_457531.1	'UXUB_ECOLI (486 aa), 80% identity in 484 aa overlap
NP_457538.1	'HYBG_ECOLI (82 aa), 94% identity in 82 aa overlap
NP_457539.1	'HYBF_ECOLI (113 aa), 85% identity in 113 aa overlap
NP_457541.1	'HYBD_ECOLI (164 aa), 94% identity in 163 aa overlap
NP_457542.1	'MBHM_ECOLI (566 aa), 94% identity in 566 aa overlap
NP_457544.1	'HYBA_ECOLI (328 aa), 95% identity in 328 aa overlap
NP_457551.1	'EXBD_ECOLI (141 aa), 94% identity in 141 aa overlap. Contains a possible membrane spanning hydrophobic domain'
NP_457552.1	'EXBB_ECOLI (244 aa), 89% identity in 244 aa overlap. Contains possible membrane spanning hydrophobic domains'
NP_457554.1	'METC_ECOLI (395 aa), 87% identity in 395 aa overlap
NP_457565.1	'SUFI_ECOLI (470 aa), 93% identity in 468 aa overlap. Contains a possible N-terminal signal sequence.'
NP_457567.1	'PARC_ECOLI (752 aa), 95% identity in 752 aa overlap
NP_457569.1	'YGIW_ECOLI (130 aa), 89% identity in 130 aa overlap. Contains a possible N-terminal signal sequence'
NP_457608.3	'OAT_ECOLI (429 aa), 95% identity in 428 aa overlap
NP_457623.1	'YHAH_ECOLI (121 aa), 90% identity in 118 aa overlap. Contains possible membrane spanning hydrophobic domains.'
NP_457624.1	'YHAJ_ECOLI (298 aa), 97% identity in 298 aa overlap
NP_457629.1	'TDCE_ECOLI (746 aa), 93% identity in 741 aa overlap
NP_457651.1	'YRAP_ECOLI (191 aa), 93% identity in 191 aa overlap. Contains a possible N-terminal signal sequence.'
NP_457661.1	'MTR_ECOLI (414 aa), 95% identity in 414 aa overlap
NP_457678.1	'GREA_ECOLI (158 aa), 97% identity in 158 aa overlap
NP_457692.1	'YRBF_ECOLI (269 aa), 95% identity in 266 aa overlap
NP_457698.1	'YHBG_ECOLI (240 aa), 97% identity in 240 aa overlap
NP_457703.1	'PTSO_ECOLI (90 aa), 97% identity in 90 aa overlap
NP_457710.1	'GLTD_ECOLI (471 aa), 95% identity in 471 aa overlap
NP_457716.1	'NANT_ECOLI (496 aa), 95% identity in 496 aa overlap
NP_457743.1	'YHCS_ECOLI (309 aa), 95% identity in 309 aa overlap
NP_457747.1	'YHDE_ECOLI (197 aa), 85% identity in 197 aa overlap
NP_457769.1	'FADB_ECOLI (729 aa), 95% identity in 729 aa overlap
NP_457770.1	'THIK_ECOLI (387 aa), 95% identity in 387 aa overlap
NP_457797.1	Identical to Salmonella typhimurium LT2 YigG protein TR:Q9L6P2 (EMBL:AF233324) (152 aa) fasta scores: E(): 0, 100.0% id in 152 aa, and to Escherichia coli hypothetical 15.8 kDa protein in corA-rarD intergenic region YigG SW:YIGG_ECOLI (P27843) (138 aa) fasta scores: E(): 8.1e-27, 58.6% id in 128 aa
NP_457800.1	'UVRD_ECOLI (720 aa), 98% identity in 720 aa overlap
NP_457802.1	'XERC_ECOLI (298 aa), 90% identity in 295 aa overlap
NP_457817.1	'YIFK_ECOLI (461 aa), 94% identity in 461 aa overlap
NP_457825.1	'RFFG_ECOLI (355 aa), 89% identity in 354 aa overlap
NP_457833.1	'GPPA_ECOLI (494 aa), 89% identity in 491 aa overlap
NP_457834.1	'REP_ECOLI (673 aa), 96% identity in 673 aa overlap
NP_457847.1	'ILVG_ECOLI (548 aa), 92% identity in 548 aa overlap
NP_457886.1	'DNIV_ECOLI (184 aa), 87% identity in 181 aa overlap
NP_457900.1	'HYDG_ECOLI (441 aa), 90% identity in 436 aa overlap
NP_457904.1	'DBHA_ECOLI (90 aa), 99% identity in 90 aa overlap
NP_457912.1	'THIF_ECOLI (251 aa), 87% identity in 251 aa overlap
NP_457935.1	'OXYR_ECOLI (305 aa), 96% identity in 305 aa overlap
NP_457943.1	'TALC_ECOLI (220 aa), 89% identity in 220 aa overlap
NP_457944.1	'GLDA_ECOLI (367 aa), 92% identity in 367 aa overlap
NP_457952.1	'AK2H_ECOLI (809 aa), 94% identity in 809 aa overlap
NP_457953.1	'METB_ECOLI (386 aa), 96% identity in 386 aa overlap
NP_457958.1	'CYTR_ECOLI (341 aa), 87% identity in 341 aa overlap
NP_457965.1	'GLPF_ECOLI (281 aa), 93% identity in 281 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.'
NP_457967.3	'GLPX_ECOLI (336 aa), 95% identity in 336 aa overlap
NP_457988.1	'SUBI_ECOLI (329 aa), 94% identity in 329 aa overlap
NP_457992.1	'CPXR_ECOLI (232 aa), 97% identity in 232 aa overlap
NP_457996.1	'SODM_ECOLI (205 aa), 98% identity in 205 aa overlap
NP_458014.1	'FDOH_ECOLI (300 aa), 93% identity in 300 aa overlap
NP_458015.1	'FDOI_ECOLI (211 aa), 96% identity in 211 aa overlap
NP_458044.1	'NTRC_ECOLI (469 aa), 96% identity in 469 aa overlap
NP_458051.1	Previously sequenced Salmonella typhi disulfide oxidoreductase dsbA TR:Q9X6N0 (EMBL:AF141380) (207 aa) fasta scores: E(): 0, 100.0% id in 207 aa. Also similar to Escherichia coli thiol:disulfide interchange protein DsbA required for disulphide bond formation SW:DSBA_ECOLI (P24991; Q46951; Q46952) (208 aa) fasta scores: E(): 0, 85.6% id in 208 aa; Orthologue of E. coli dsbA (DSBA_ECOLI); Fasta hit to DSBA_ECOLI (208 aa), 86% identity in 208 aa overlap'
NP_458057.1	'RBSR_ECOLI (329 aa), 90% identity in 330 aa overlap
NP_458058.1	'RBSK_ECOLI (309 aa), 89% identity in 308 aa overlap
NP_458060.1	'RBSC_ECOLI (321 aa), 96% identity in 321 aa overlap
NP_458061.1	'RBSA_ECOLI (501 aa), 96% identity in 501 aa overlap
NP_458068.1	shown be important for the modulation of initiation at oriC in a minichromosome model (its true role in chromosome replication in E. coli is equivocal) (MIOC_ECOLI)
NP_458092.1	'PSTB_ECOLI (257 aa), 98% identity in 257 aa overlap
NP_458095.3	'YIEG_ECOLI (445 aa), 96% identity in 445 aa overlap. Contains multiple possible membrane spanning hydrophobic domains'
NP_458117.1	'TORA_ECOLI (848 aa), 90% identity in 845 aa overlap
NP_458136.1	'DSDX_ECOLI (445 aa), 93% identity in 445 aa overlap. Contains multiple possible membrane spanning hydrophobic domains.'
NP_458137.1	'DSDC_ECOLI (311 aa), 91% identity in 307 aa overlap
NP_458141.1	'ILVB_ECOLI (562 aa), 92% identity in 562 aa overlap
NP_458147.1	'UHPA_ECOLI (196 aa), 97% identity in 196 aa overlap
NP_458150.1	'UHPT_ECOLI (463 aa), 95% identity in 463 aa overlap
NP_458178.1	'YICJ_ECOLI (460 aa), 91% identity in 460 aa overlap
NP_458187.1	'KGUA_ECOLI (207 aa), 96% identity in 207 aa overlap
NP_458222.1	activates the peptidoglycan =hydrolases AmiA and AmiB
NP_458233.1	'LLDR_ECOLI (258 aa), 86% identity in 258 aa overlap
NP_458234.1	'LLDP_ECOLI (551 aa), 94% identity in 551 aa overlap
NP_458246.1	'ALDB_ECOLI (512 aa), 96% identity in 512 aa overlap
NP_458250.1	'SGBU_ECOLI (286 aa), 91% identity in 286 aa overlap
NP_458253.1	'ISA1_ECOLI (91 aa), 98% identity in 91 aa overlap
NP_458289.1	'DPPA_ECOLI (535 aa), 93% identity in 535 aa overlap
NP_458290.1	'DPPB_ECOLI (339 aa), 98% identity in 339 aa overlap
NP_458291.1	'DPPC_ECOLI (300 aa), 94% identity in 300 aa overlap
NP_458292.1	'DPPD_ECOLI (327 aa), 95% identity in 327 aa overlap
NP_458293.1	'DPPF_ECOLI (334 aa), 96% identity in 334 aa overlap
NP_458305.1	'DCTA_ECOLI (428 aa), 95% identity in 428 aa overlap
NP_458310.1	'YHJE_ECOLI (440 aa), 94% identity in 440 aa overlap
NP_458357.1	Identical to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivH SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 0, 100.0% id in 308 aa, and similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 0, 97.4% id in 308 aa
NP_458359.1	Identical to Salmonella typhimurium high-affinity branched-chain amino acid transport ATP-binding protein LivG SW:LIVG_SALTY (P30293) (255 aa) fasta scores: E(): 0, 100.0% id in 255 aa, and similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivG SW:LIVG_ECOLI (P22730) (255 aa) fasta scores: E(): 0, 96.1% id in 255 aa
NP_458360.1	Identical to Salmonella typhimurium high-affinity branched-chain amino acid transport ATP-binding protein LivF liSW:LIVF_SALTY (P30294) (237 aa) fasta scores: E(): 0, 100.0% id in 237 aa, and similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: E(): 0, 96.2% id in 237 aa
NP_458367.1	Poor database matches, partial similarity to Escherichia coli hypothetical 16.6 kDa protein in ggt-ugpQ intergenic region precursor YhhA SW:YHHA_ECOLI (P23850) (146 aa) fasta scores: E(): 5.8e-12, 59.2% id in 147 aa. Contains N-terminal signal sequence, probable secreted protein. Glutamine rich protein, 25 residues out of 123.
NP_458402.1	Identical to the Escherichia coli transcriptional regulatory protein OmpR SW:OMPR_ECOLI (P03025) (239 aa) fasta scores: E(): 0, 100.0% id in 239 aa, and simillar to Salmonella typhimurium, and Salmonella typhi transcriptional regulatory protein OmpR SW:OMPR_SALTY (P08981) (239 aa) fasta scores: E(): 0, 99.6% id in 239 aa
NP_458403.1	Salmonella typhi osmolarity sensor protein EnvZ SW:ENVZ_SALTI (P41406) (450 aa) fasta scores: E(): 0, 100.0% id in 450 aa, similar to Escherichia coli osmolarity sensor protein EnvZ SW:ENVZ_ECOLI (P02933) (450 aa) fasta scores: E(): 0, 95.5% id in 449 aa; Orthologue of E. coli envZ (ENVZ_ECOLI); Fasta hit to ENVZ_ECOLI (450 aa), 96% identity in 446 aa overlap'
NP_458455.1	Identical to Salmonella typhimurium elongation factor Tu tufa and tufB SW:EFTU_SALTY (P21694) (393 aa) fasta scores: E(): 0, 100.0% id in 393 aa, and to Escherichia coli elongation factor tu SW:EFTU_ECOLI (P02990) (393 aa) fasta scores: E(): 0, 99.7% id in 392 aa
NP_458517.1	Poor database matches, similar to Rhodobacter capsulatus PTS system, fructose-specific IIBC component FruA SW:PTFB_RHOCA (P23387) (578 aa) fasta scores: E(): 2.2e-05, 23.3% id in 510 aa. Predicted hydrophobic membrane spanning domains, integral membrane protein.
NP_458624.1	Previously sequenced Salmonella typhi topoisomerase B TopB TR:Q9RHF5 (EMBL:AF000001) (664 aa) fasta scores: E(): 0, 100.0% id in 664 aa. Also similar to Escherichia coli DNA topoisomerase III TopB SW:TOP3_ECOLI (P14294) (653 aa) fasta scores: E(): 0, 40.7% id in 619 aa
NP_458627.1	Previously sequenced Salmonella typhi single strand binding protein ssB TR:Q9RHF4 (EMBL:AF000001) (178 aa) fasta scores: E(): 0, 100.0% id in 178 aa. Also highly similar to other single-stranded DNA-binding proteins including: Escherichia coli SW:SSB_ECOLI () (177 aa) fasta scores: E(): 0, 71.8% id in 177 aa and Bacteriophage P1 single-stranded DNA-binding protein Ssb-p1 ssb-p1 TR:Q9XJG4 (EMBL:AF125376) (162 aa) fasta scores: E(): 0, 67.7% id in 164 aa
NP_458628.1	Previously sequenced Salmonella typhi PilL TR:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 0, 99.5% id in 414 aa. Also weakly similar to Escherichia coli plasmid IncI1 R64 PilL protein TR:BAB12661 (EMBL:AP002527) (411 aa) fasta scores: E(): 3.6e-10, 40.6% id in 133 aa. Contains a possible N-terminal signal sequence.
NP_458629.1	Previously sequenced Salmonella typhi PilM TR:Q9RHF3 (EMBL:AF000001) (139 aa) fasta scores: E(): 0, 100.0% id in 139 aa. Also similar to Escherichia coli plasmid IncI1 R64 protein PilM TR:O07371 (EMBL:D88588) (145 aa) fasta scores: E(): 1.2e-24, 49.6% id in 129 aa. Contains a possible N-terminal signal sequence
NP_458631.1	Previously sequenced Salmonella typhi PilO pilO TR:Q9K2P9 (EMBL:AF247502) (428 aa) fasta scores: E(): 0, 100.0% id in 428 aa. Also similar to Escherichia coli plasmid IncI1 R64 protein PilO TR:O07373 (EMBL:D88588) (431 aa) fasta scores: E(): 0, 34.1% id in 437 aa
NP_458632.1	Previously sequenced Salmonella typhi PilP TR:Q9RHF2 (EMBL:AF000001) (156 aa) fasta scores: E(): 0, 100.0% id in 156 aa. Also similar to Escherichia coli plasmid IncI1 R64 PilP protein TR:O07374 (EMBL:D88588) (150 aa) fasta scores: E(): 5.8e-10, 43.2% id in 132 aa
NP_458633.1	Previously sequenced Salmonella typhi PilQ TR:Q9LBE1 (EMBL:AF000001) (571 aa) fasta scores: E(): 0, 100.0% id in 571aa. Also similar to Escherichia coli plasmid IncI1 R64 nucleotide-binding protein PilQ TR:O07375 (EMBL:D88588) (517 aa) fasta scores: E(): 0, 51.3% id in 519 aa
NP_458634.1	Previously sequenced Salmonella typhi PilR TR:Q9ZIV0 (EMBL:AF000001) (361 aa) fasta scores: E(): 0, 100.0% id in 361 aa. Also similar to Escherichia coli plasmid IncI1 R64 integral membrane protein pilR TR:O07376 (EMBL:D88588) (365 aa) fasta scores: E(): 0, 44.5% id in 357 aa. Contains possible membrane spanning hydrophobic domains.
NP_458635.1	Previously sequenced Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0, 100.0% id in 206 aa. Also similar to Escherichia coli plasmid IncI1 R64 type IV prepilin pilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 1.6e-31, 49.2% id in 193 aa
NP_458636.1	Previously sequenced Salmonella typhi PilT protein TR:Q9ZIU8 (EMBL:AF000001) (158 aa) fasta scores: E(): 0, 100.0% id in 158 aa. Also similar to Escherichia coli plasmid IncI1 R64 PilT protein TR:O07378 (EMBL:D88588) (186 aa) fasta scores: E(): 0, 64.3% id in 140 aa. Contains possible membrane spanning hydrophobic domains.
NP_458637.1	Previously sequenced Salmonella typhi PilU protein TR:Q9ZIU7 (EMBL:AF000001) (220 aa) fasta scores: E(): 0, 100.0% id in 220 aa. Also similar to Escherichia coli plasmid IncI1 R64 prepilin peptidase pilU TR:O07379 (EMBL:D88588) (218 aa) fasta scores: E(): 2e-25, 34.4% id in 221 aa. Contains multiple possible membrane spanning hydrophobic domains
NP_458638.1	Previously sequenced Salmonella typhi PilV TR:O51801 (EMBL:AF000001) (435 aa) fasta scores: E(): 0, 100.0% id in 435 aa. Also similar to Escherichia coli shufflon protein A' SW:SHU2_ECOLI (P09746) (430 aa) fasta scores: E(): 0, 49.5% id in 434 aa. Contains multiple possible membrane spanning hydrophobic domains
NP_458640.1	Previously sequenced Salmonella typhi Rci TR:O51802 (EMBL:AF000001) (383 aa) fasta scores: E(): 0, 100.0% id in 383 aa. Also similar to Escherichia coli plasmid IncI1 ColIb-P shufflon-specific DNA recombinase Rci SW:RCI2_ECOLI (P16470) (384 aa) fasta scores: E(): 0, 72.3% id in 379 aa
NP_458720.1	Transposable element hypothetical protein. Similar to Escherichia coli hypothetical 12.8 kDa protein SW:YR7C_ECOLI (P21317) (113 aa) fasta scores: E(): 0, 86.7% id in 113 aa
NP_458876.1	Identical to Salmonella typhimurium YjgF yjgF TR:Q9X445 (EMBL:AF095578) (128 aa) fasta scores: E(): 0, 100.0% id in 128 aa and to Escherichia coli hypothetical protein YjgF yjgF SW:YJGF_ECOLI (P39330) (127 aa) fasta scores: E(): 0, 93.7% id in 127 aa; Fasta hit to TDCF_ECOLI (129 aa), 74% identity in 127 aa overlap'
NP_458879.1	Identical to Salmonella typhimurium pyrBI operon leader peptide PyrL SW:LPPY_SALTY (P08522) (33 aa) fasta scores: E(): 1.1e-15, 100.0% id in 33 aa, and to Escherichia coli pyrBI operon leader peptide PyrL SW:LPPY_ECOLI (P09150) (44 aa) fasta scores: E(): 1e-12, 84.8% id in 33 aa
NP_458890.1	Identical to Salmonella typhimurium hypothetical protein in miaE 3' region YtgA SW:YTGA_SALTY (Q08020) (162 aa) fasta scores: E(): 0, 100.0% id in 162 aa. Contains a probable N-terminal signal sequence
NP_458988.1	Bifunctional protein. DNA binding, contains helix-turn-helix. Transporter, interacts with NcuC transporting NMN into the cell. Similar to Salmonella typhimurium transcriptional regulator NadR SW:NADR_SALTY (P24518) (409 aa) fasta scores: E(): 0, 98.8% id in 410 aa, and to Escherichia coli transcriptional regulator NadR SW:NADR_ECOLI (P27278; P76819) (410 aa) fasta scores: E(): 0, 94.6% id in 409 aa
NP_569236.1	similar to (EMBL:D10483) insB from Escherichia coli insertion element IS1
NP_569237.1	similar to (EMBL:X52534) insA from Escherichia coli insertion element IS1
NP_569238.1	responsible for the influx of magnesium ions
NP_569239.1	similar to (EMBL:L02122) yigE from Escherichia coli
NP_569241.1	similar to HCM1.30c
NP_872581.1	similar to R0091 from plasmid R27
NP_569245.1	similar to (EMBL:AF127177) from Escherichia coli and (EMBL:AF071034) L0009 from Escherichia coli O157:H7
NP_569253.1	similar to (EMBL:U64984) Myxococcus xanthus bacteriophage Mx8 hypothetical protein
NP_569254.1	similar to HCM1.13c
NP_569265.1	similar to HCM1.43
NP_569266.1	similar to HCM1.42
NP_569272.1	similar to HCM1.50, HCM1.51, HCM1.52, HCM1.53, and HCM1.56c
NP_569273.1	similar to HCM1.49c, HCM1.51, HCM1.52, HCM1.53, and HCM1.56c
NP_569274.1	similar to HCM1.49c, HCM1.50, HCM1.52, HCM1.53, and HCM1.56c
NP_569275.1	similar to HCM1.49c, HCM1.50, HCM1.51, HCM1.53, and HCM1.56c
NP_569276.1	similar to HCM1.49c, HCM1.50, HCM1.51, HCM1.52, and HCM1.56c
NP_569277.1	similar to RepHI1B (EMBL:X68824) repA from Escherichia coli plasmid pIP522; similar to HCM1.64
NP_569280.1	similar to HCM1.49c, HCM1.50, HCM1.51, HCM1.52, and HCM1.53
NP_569282.1	similar to (EMBL:AF021249) M.CviQIII from Chlorella virus NY-2A; similar to (EMBL:U03474) Proteus vulgaris ORF associated with restriction endonuclease PvuRts1 I; similar to (EMBL:U60283) traG1 from Serratia marcescens plasmid R478
NP_569283.1	similar to (EMBL:AE001339) parB from Chlamydia trachomatis; similar to HCM1.286c and HCM1.63c
NP_569284.1	similar to (EMBL:U16027) LlaIIA from Lactococcus lactis modification methylase
NP_569288.1	similar to HCM1.58c and HCM1.286c
NP_569289.1	similar to (EMBL:M95772) repA from Salmonella typhi plasmid R27; similar to HCM1.54
NP_569290.1	similar to (EMBL:AF105019) trhA from Salmonella typhi plasmid R27; similar to (EMBL:K01147) traA from Escherichia coli F plasmid
NP_569291.1	similar to (EMBL:AF105019) trhL from Salmonella typhi plasmid R27
NP_569292.1	similar to (EMBL:AF105019) trhE from Salmonella typhi plasmid R27
NP_569293.1	similar to (EMBL:AF105019) Salmonella typhi hypothetical protein from plasmid R27
NP_569294.1	similar to (EMBL:AF105019) Salmonella typhi hypothetical protein from plasmid R27
NP_569295.1	similar to (EMBL:AF105019) trhB from Salmonella typhi plasmid R27; similar to (EMBL:AF030442) htdB from Serratia marcescens plasmid R478
NP_569296.1	similar to (EMBL:AF105019) Salmonella typhi hypothetical protein from plasmid R27
NP_569297.1	similar to (EMBL:AF105019) Salmonella typhi hypothetical protein from plasmid R27; similar to (EMBL:AF030442) htdT from Serratia marcescens plasmid R478
NP_569298.1	similar to (EMBL:AF105019) trhV from Salmonella typhi plasmid R27; similar to (EMBL:AF030442) htdD from Serratia marcescens plasmid R478
NP_569299.1	similar to (EMBL:AF105019) trhC from Salmonella typhi plasmid R27; similar to (EMBL:M30936) traC from Escherichia coli F plasmid; ATPase
NP_569300.1	similar to (EMBL:AF105019) parB from Salmonella typhi plasmid R27; similar to (EMBL:X90708) parA28 from Alcaligenes eutrophus
NP_569301.1	similar to (EMBL:AF105019) repA from Salmonella typhi plasmid R27; similar to (EMBL:X02954) parB from Escherichia coli
NP_569302.1	similar to (EMBL:AF105019) Salmonella typhi hypothetical protein from plasmid R27
NP_569303.1	similar to (EMBL:AF105019) Salmonella typhi hypothetical protein from plasmid R27
NP_569304.1	similar to (EMBL:AF105019) Salmonella typhi surface exclusion protein from plasmid R27
NP_569305.1	similar to (EMBL:AF105019) Salmonella typhi surface exclusion protein from plasmid R27
NP_569306.1	similar to (EMBL:AF105019) stbA from Salmonella typhi plasmid R27; similar to (EMBL:X12777) stbA from Escherichia coli IncFII plasmid NR1
NP_569307.1	similar to (EMBL:AF105019) orfB from Salmonella typhi plasmid R27; similar to (EMBL:U59131) orfB from Serratia marcescens plasmid R478
NP_569308.1	similar to (EMBL:L20342) htdA IncHI1 transfer repressor
NP_569309.1	similar to (EMBL:AF105019) htdF from Salmonella typhi plasmid R27
NP_569310.1	similar to (EMBL:AF105019) htdK from Salmonella typhi plasmid R27; similar to (EMBL:U59129) htdK from Serratia marcescens plasmid R478
NP_569311.1	similar to two ORFs (EMBL:AF105019) from Salmonella typhi hypothetical protein from plasmid R27
NP_569312.1	similar to (EMBL:AF105019) trhF from Salmonella typhi plasmid R27; similar to (EMBL:Z27457) sipC from Bacillus caldolyticus plasmids pTA1015 and pTA1040
NP_569313.1	similar to (EMBL:AF105019) trhW from Salmonella typhi plasmid R27; similar to (EMBL:M93106) traW from Escherichia coli F plasmid
NP_569314.1	similar to (EMBL:AF105019) trhU from Salmonella typhi plasmid R27; similar to (EMBL:M34695) traU from Escherichia coli F plasmid
NP_569315.1	TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell
NP_569317.1	similar to (EMBL:AB001291) uvrD from Thermus aquaticus; similar to HCM1.107
NP_569319.1	similar to (EMBL:AF105019) Salmonella typhi hypothetical protein from plasmid R27
NP_569320.2	similar to (EMBL:AF105019) trhI from Salmonella typhi plasmid R27; similar to (EMBL:AB001291) uvrD from Thermus aquaticus; similar to HCM1.103
NP_569324.1	similar to (EMBL:M62869) cobS from Pseudomonas
NP_569332.1	similar to HCM1.121
NP_569333.1	similar to HCM1.120
NP_569334.1	similar to HCM1.123
NP_569335.1	similar to HCM1.122
NP_569342.1	similar to (EMBL:D90037) tus from Escherichia coli and (EMBL:AF045242) tus from Salmonella typhimurium
NP_569345.1	similar to (EMBL:X03453) cre from bacteriophage P1
NP_569346.1	similar to (EMBL:X57977) hha from Escherichia coli and (EMBL:X58058) ymoA from Yersinia enterocolitica; similar to (EMBL:AF074613) L7004 from Escherichia coli; similar to (EMBL:Y13856) rmoA from Escherichia coli plasmid R100
NP_569347.1	similar to (EMBL:X52534) insA from Escherichia coli insertion element IS1
NP_569348.1	similar to (EMBL:D10483) insB from Escherichia coli insertion element IS1
NP_569349.1	RepE; RepFIB
NP_569350.1	similar to (EMBL:X52534) insA from Escherichia coli insertion element IS1
NP_569351.1	similar to (EMBL:D10483) insB from Escherichia coli insertion element IS1
NP_569354.2	similar to (EMBL:AB021078) yadA Escherichia coli plasmid IncI1 ColIb-P9
NP_569360.1	similar to (EMBL:Z00027) merR from Pseudomonas aeruginosa plasmid pVS1; similar to HCM1.245
NP_569361.1	similar to (EMBL:M24940) merT from Serratia marcescens plasmid pDU1358; similar to HCM1.234c
NP_569362.1	similar to (EMBL:Z00027) merP from Pseudomonas aeruginosa plasmid pVS1; similar to HCM1.233c
NP_569363.1	similar to (EMBL:U90263) merC from Pseudomonas stutzeri plasmid pPB; similar to HCM1.232c
NP_569364.1	similar to (EMBL:Z00027) merA from Pseudomonas aeruginosa plasmid pVS1; similar to HCM1.231c
NP_569365.1	similar to (EMBL:Z00027) merD from Pseudomonas aeruginosa plasmid pVS1; similar to HCM1.230
NP_569366.1	similar to (EMBL:L04303) urf1 from Acinetobacter calcoaceticus plasmid pKLH2
NP_569367.1	similar to (EMBL:M10791) tnpM from Escherichia coli transposon Tn21
NP_569368.1	similar to (EMBL:X53635) tnp from Mycobacterium fortuitum Tn610
NP_569370.1	similar to (EMBL:X12868) dhfRV from Escherichia coli
NP_569372.1	similar to (EMBL:U12338) int from Escherichia coli plasmid pLM020
NP_569373.1	similar to (EMBL:X01298) tnpR from Escherichia coli transposon Tn21
NP_569374.1	similar to (EMBL:X14236) tnpA from Escherichia coli transposase for transposon Tn3926
NP_569380.1	similar to (EMBL:X69210) stpA from Escherichia coli
NP_569385.1	rich in Ser, Thr, Glu and Gln
NP_569387.1	similar to (EMBL:AF079317) Sphingomonas aromaticivorans hypothetical protein from plasmid pNL1
NP_569389.1	similar to (EMBL:X05050) Escherichia coli modification methylase EcoRII from plasmid N3
NP_569390.1	similar to (EMBL:U30471) nuc from Shigella flexneri micrococcal and (EMBL:U32809) HI1296 from Haemophilus influenzae hypothetical protein
NP_569396.1	similar to (EMBL:AF162223) Shigella flexneri IS10-left transposase from Tn10
NP_569402.1	similar to (EMBL:U04047) Streptococcus pneumoniae transposase for insertion sequence IS1202 and (EMBL:AE000065) Y4BF from Rhizobium sp. strain NGR234 transposase from plasmid sym pNGR234a
NP_569404.1	similar to (EMBL:D10483) insB from Escherichia coli insertion element IS1
NP_569405.1	similar to (EMBL:X52534) insA from Escherichia coli insertion element IS1
NP_569406.1	similar to (EMBL:V00623) cat from Escherichia coli
NP_569407.1	similar to (EMBL:AP000342) ybjA from Shigella flexneri plasmid R100; similar to (EMBL:AF051917) Staphylococcus aureus hypothetical protein from plasmid pSK41
NP_569408.1	similar to (EMBL:Z48244) Yersinia enterocolitica transposase for insertion sequence element IS1328 (EMBL:U67194) tnpA from Escherichia coli plasmid IncP-beta R751
NP_569410.1	similar to (EMBL:M12900) probable transposase from IS15-R
NP_569411.1	similar to (EMBL:J01749) bla from Escherichia coli plasmids
NP_569412.1	similar to (EMBL:M12900) probable transposase from IS15-R
NP_569413.1	similar to (EMBL:M28829) repC from Escherichia coli plasmid IncQ RSF1010
NP_569414.1	similar to (EMBL:M36657) sulII from Escherichia coli
NP_569415.1	similar to (EMBL:M95402) strA from Erwinia amylovora plasmid pEa34; similar to (EMBL:X53527) aphE from Streptomyces griseus
NP_569416.1	similar to (EMBL:M95402) strB from Erwinia amylovora plasmid pEa34
NP_569417.1	similar to (EMBL:X00011) Proteus vulgaris transposon Tn 2680; has no stop codon within the inverted repeats of the  transposable unit
NP_569418.1	similar to (EMBL:AP000342) yaeA from Shigella flexneri plasmid R100
NP_569419.1	similar to (EMBL:X03405) merE from Pseudomonas aeruginosa plasmid R100
NP_569420.1	similar to (EMBL:L29404) merD from Shigella flexneri plasmid IncFII NR1; similar to HCM1.159
NP_569421.1	similar to (EMBL:J01730) merA from Shigella flexneri plasmid IncFII NR1; similar to HCM1.158
NP_569422.1	similar to (EMBL:U90263) merC from Pseudomonas stutzeri plasmid pPB
NP_569423.1	similar to (EMBL:J01730) merP from Shigella flexneri plasmid IncFII NR1
NP_569424.1	similar to (EMBL:J01730) merT from Shigella flexneri plasmid IncFII
NP_569425.1	similar to (EMBL:K03089) merR from Shigella flexneri plasmid IncFII NR1
NP_569426.1	similar to (EMBL:Z48244) Yersinia enterocolitica transposase for insertion sequence element IS1328 and (EMBL:U67194) tnpA from Escherichia coli plasmid IncP-beta R751
NP_569427.1	similar to (EMBL:D10483) insB from Escherichia coli insertion element IS1
NP_569428.1	similar to (EMBL:X52534) insA from Escherichia coli insertion element IS1
NP_569429.1	similar to (EMBL:V00611) tetA from Escherichia coli
NP_569430.1	similar to (EMBL:X00694) tetR from Escherichia coli
NP_569431.1	similar to (EMBL:AF162223) jemC from Shigella flexneri hypothetical protein from transposon Tn10
NP_569432.1	similar to (EMBL:AP000342) ydjB from Shigella flexneri plasmid R100
NP_569433.1	similar to (EMBL:AP000342) ydjA from Shigella flexneri plasmid R100
NP_569434.1	similar to (EMBL:J01614) lysR from Escherichia coli; possibly truncated
NP_569435.1	similar to (EMBL:AF162223) Shigella flexneri IS10-left transposase from Tn10
NP_569438.1	similar to (EMBL:M57431) umuD from Salmonella typhimurium protein
NP_569439.1	similar to (EMBL:D90147) mucB from Escherichia coli plasmid IncN pKM101
NP_569440.1	similar to (EMBL:Z11828) com1 from Coxiella burnetii outer membrane protein precursor; similar to (EMBL:AF130422) bcfH Salmonella typhimurium hypothetical protein
NP_569444.1	similar to (EMBL:X76687) dsbC from Erwinia chrysanthemi
NP_569445.1	similar to (EMBL:Z68186) bfpH from Escherichia coli plasmid pMAR2; similar to (EMBL:U67194) trbN from Enterobacter aerogenes plasmid R751; similar to (EMBL:X80892) iagB from Salmonella typhi
NP_569447.1	agg(5) motif may be a site for slipped-strand mispairing
NP_569448.1	similar to (EMBL:M59763) traH from Escherichia coli F plasmid
NP_569449.1	similar to (EMBL:M20787) traF from Escherichia coli F plasmid
NP_569458.1	similar to (EMBL:L27482) pfaP from Leptospira borgpetersenii
NP_569459.1	similar to (EMBL:AF065404) pXO1-01 from Bacillus anthracis plasmid pX01
NP_569463.1	similar to (EMBL:AE000133) ykfF from Escherichia coli
NP_569471.1	similar to (EMBL:X05813) hok from Escherichia coli plasmid IncFII R1
NP_569473.2	similar to (EMBL:AL117211) YPMT1.45C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1119, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569474.1	similar to (EMBL:AL117211) YPMT1.46C, Yersinia pestis hypothetical protein from plasmid pMT1; similar to YPMT1.46Ac (EMBL:AL117211) Yersinia pestis hypothetical protein from plasmid pMT1
NP_569475.1	similar to (EMBL:AL117211) YPMT1.46BC, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1117, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569476.1	similar to (EMBL:AL117211) YPMT1.47C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1116, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569477.1	similar to (EMBL:X78401) ninX, Bacteriophage P22 NinX protein; similar to (EMBL:AL117211) YPMT1.48C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1115, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569478.1	similar to (EMBL:AE001907) DR0482, Deinococcus radiodurans B-cell receptor associated protein-related protein; similar to (EMBL:AL117211) YPMT1.49C, Yersinia pestis CO-92 putative lipoprotein from plasmid pMT1; similar to (EMBL:AF074611) Y1114, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569479.1	similar to (EMBL:AL117211) YPMT1.49AC, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1
NP_569480.1	similar to (EMBL:L20680) recA, Thermus aquaticus RecA protein; similar to (EMBL:AL117211) YPMT1.50C, Yersinia pestis CO-92 putative recombinase from plasmid pMT1; similar to (EMBL:AF053947) Y1113, Yersinia pestis KIM5 recA-like protein from plasmid pMT1
NP_569481.1	similar to (EMBL:AL117211) YPMT1.50AC, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1112, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569482.1	similar to exonuclease domain of bacterial DNA polymerase I (EMBL:J04479) polA, Streptococcus pneumoniae DNA polymerase I; similar to (EMBL:AL117211) YPMT1.51C, Yersinia pestis CO-92 putative exonuclease from plasmid pMT1; similar to (EMBL:AF074611) Y1111, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569483.1	similar to (EMBL:AL117211) YPMT1.52C, Yersinia pestis CO-92 hypothetical protein; similar to (EMBL:AF074611) Y1110, Yersinia pestis KIM5 putative regulator
NP_569484.1	similar to (EMBL:AL117211) YPMT1.53C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1109, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569485.1	contains a possible membrane-spanning region; lies within a region of low G+C composition relative to surrounding sequence
NP_569486.1	similar to (EMBL:AL117211) YPMT1.55C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF053947) Y1107, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569487.1	similar to (EMBL:AF062920) dnaE, Thermus aquaticus DNA polymerase III; similar to (EMBL:AF074611) Y1106, Yersinia pestis KIM5 putative DNA polymerase III , alpha subunit from plasmid pMT1
NP_569488.1	similar to (EMBL:M62869) cobS, Pseudomonas denitrificans protein involved in cobalt insertion-mediating reactions of cobalamin biosynthesis; similar to (EMBL:AL117211) YPMT1.88, Yersinia pestis CO-92 putative porphyrin biosynthetic protein; similar to (EMBL:AF053947) cobS, Yersinia pestis KIM5 cobS
NP_569489.1	similar to (EMBL:M62869) cobT, Pseudomonas denitrificans protein involved in the transformation of precorrin-3 into cobyrinic acid; similar to (EMBL:AL117211) YPMT1.87, Yersinia pestis CO-92 putative porphyrin biosynthetic protein from plasmid pMT1; similar to (EMBL:AF074611) cobT, Yersinia pestis KIM5 putative porphyrin biosynthetic enzyme from plasmid pMT1
NP_569490.1	similar to (EMBL:AL117211) YPMT1.86A, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1
NP_569491.1	similar to (EMBL:AL117211) YPMT1.86C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1102, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569492.1	similar to (EMBL:AF099172) int, Vibrio cholerae SXT element integrase; similar to (EMBL:AL117211) YPMT1.85, Yersinia pestis CO-92 putative integrase from plasmid pMT1; similar to (EMBL:AF074611) Y1101, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569495.1	functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase
NP_569497.1	similar to (EMBL:D16359) Y16Q, hypothetical protein from bacteriophage T4
NP_569498.1	similar to (EMBL:D10391) phoH, Escherichia coli phosphate starvation-inducible protein; similar to (EMBL:AL031866) ORF22, from Yersinia pestis strain 6/69 102 kb unstable region
NP_569503.1	similar to (EMBL:AF053947) ORF4, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1; similar to (EMBL:X59991) Squalus acanthias (Spiny dogfish) C-type natriuretic peptide
NP_569507.1	similar to bacteriophage DNA ligase (EMBL:AF158101) bacteriophage T4 DNA ligase; similar to (EMBL:AF074611) Y1056, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1095, Yersinia pestis KIM5 hypothetical protein from the same plasmid
NP_569508.1	similar to (EMBL:AF074611) Y1058, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1; similar to (EMBL:AF053947) Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569510.1	similar to (EMBL:AF074611) Y1060, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1; similar to (EMBL:AF053947) Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569511.1	lies within a region of low G+C composition relative to surrounding sequence
NP_569512.1	similar to part of (EMBL:X01416) bacteriophage T4 DNA primase
NP_569513.1	similar to helicase (EMBL:K03113) bacteriophage T4 primase-helicase; similar to (EMBL:K01174) dnaB, Escherichia coli replicative DNA helicase
NP_569516.1	lies within a region of low G+C composition relative to surrounding sequence
NP_569518.1	similar to (EMBL:X05121) parA, Agrobacterium tumefaciens plasmid pTAR partition protein; similar to (EMBL:AF169828) par, Pseudomonas syringae (pv. glycinea) putative partition protein from plasmid p4180A
NP_569521.1	similar at the N-terminus to (EMBL:AF155037) bacteriophage PM2 structural protein P5
NP_569523.1	similar to bacteriophage tail protein(EMBL:AF060870) gene 37, bacteriophage Ac3 distal tail fiber large subunit GP37; similar to (EMBL:AL117211) YPMT1.04C, Yersinia pestis CO-92 putative phage tail protein from plasmid pMT1; similar to (EMBL:AF074611) Y1051, Yersinia pestis KIM5 lambda hypothetical (tail fiber protein homolog) from plasmid pMT1
NP_569524.1	similar to (EMBL:J02459) bacteriophage lambda host specificity protein J; similar to (EMBL:AL117211) YPMT1.06C, Yersinia pestis CO-92 putative phage tail protein from plasmid pMT1; similar to (EMBL:AF074611) Y1049, Yersinia pestis KIM5 lambda host specificity protein J from plasmid pMT1
NP_569525.1	similar to (EMBL:AF064539) gp20, bacteriophage N15 minor tail protein; similar to (EMBL:AL117211) YPMT1.07C, Yersinia pestis CO-92 putative phage tail protein from plasmid pMT1; similar to (EMBL:AF074611) Y1048, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569526.1	similar to (EMBL:J02459) bacteriophage lambda tail assembly protein K; similar to (EMBL:AL117211) YPMT1.08C, Yersinia pestis CO-92 putative phage tail protein from plasmid pMT1; similar to (EMBL:AF053947) Y1047, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569527.1	similar to (EMBL:J02459) bacteriophage lambda minor tail protein L; similar to (EMBL:AL117211) YPMT1.09C, Yersinia pestis CO-92 putative phage tail protein; similar to (EMBL:AF074611) Y1046, Yersinia pestis KIM5 lambda minor tail fiber protein L
NP_569528.1	similar to (EMBL:J02459) bacteriophage lambda minor tail protein M; similar to (EMBL:AL117211) YPMT1.10C, Yersinia pestis CO-92 putative phage tail protein from plasmid pMT1; similar to (EMBL:AF053947) Y1045, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569529.1	similar to bacteriophage protein (EMBL:AJ242593) tmp, bacteriophage A118 putative tape-measure protein; similar to (EMBL:AL117211) YPMT1.11C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF053947) Y1044, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569530.1	similar to (EMBL:AL117211) YPMT1.12C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1043, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569531.1	similar to (EMBL:AL117211) YPMT1.13C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF053947) Y1042, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569532.1	similar to (EMBL:AL117211) YPMT1.14C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF053947) Y1041, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569533.1	similar to (EMBL:AL117211) YPMT1.15C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1040, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569534.1	similar to (EMBL:AL117211) YPMT1.16C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1039, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569535.2	similar to (EMBL:AL117211) YPMT1.17C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1038, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569536.1	similar to (EMBL:AL117211) YPMT1.18C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1037, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569537.1	similar to (EMBL:AL117211) YPMT1.19C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1036, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569538.1	similar to (EMBL:AL117211) YPMT1.20C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1035, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1; blastn and dotplot analyses suggest that an insertion event has taken place at this point as compared to Yersinia pestis pMT1
NP_569539.1	similar to (EMBL:U23436) srpI, Synechococcus PCC7942 hypothetical protein from plasmid pANL; similar to (EMBL:AL117211) YPMT1.21C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF053947) Y1034, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569540.1	similar to (EMBL:AL117211) YPMT1.22C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1032, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1033, hypothetical protein also from the KIM5 plasmid pMT1
NP_569541.1	similar to (EMBL:AL117211) YPMT1.23C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1031, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569542.1	similar to (EMBL:X52394) bacteriophage T4 terminase gene 17; similar to (EMBL:AL117211) YPMT1.24C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1030, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569543.1	similar to (EMBL:AL117211) YPMT1.25C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF053947) Y1029, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569544.1	similar to (EMBL:AL117211) YPMT1.25AC, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF053947) Y1028, Yersinia pestis KIM5 RGD cell attachment site containing protein from plasmid pMT1
NP_569545.1	similar to (EMBL:AL117211) YPMT1.26C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1027, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569546.1	similar to (EMBL:AL117211) YPMT1.26AC, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1026, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569547.1	similar to (EMBL:AJ248285) Pyrococcus abyssi putative ABC transporter, ATP-binding protein; similar to (EMBL:AL117211) YPMT1.27C, Yersinia pestis CO-92 putative ABC transporter ATP-binding protein from plasmid pMT1; similar to (EMBL:AF074611) Y1025, Yersinia pestis KIM5 putative ABC transporter from plasmid pMT1
NP_569548.1	similar to (EMBL:AE000233) ynaK, Escherichia coli hypothetical protein; similar to (EMBL:AL117211) YPMT1.28C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1024, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569549.1	similar to putative chromosome partitioning proteins (parB family) (EMBL:D26185) spo0J, Bacillus subtilis stage 0 sporulation protein J; similar to (EMBL:AL117211) YPMT1.29C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1023, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569550.1	similar to helicase (EMBL:AF158101) uvsW, bacteriophage T4 helicase involved in recombination, repair and the regulation of DNA replication origins; similar to (EMBL:AL117211) YPMT1.30, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1022, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569551.1	similar to (EMBL:AL117211) YPMT1.31, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1021, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569552.1	similar to (EMBL:AL117211) YPMT1.32, Yersinia pestis CO-92 putative lipoprotein from plasmid pMT1; similar to (EMBL:AF074611) Y1020, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569553.1	similar to repressor of phase-1 flagellin (EMBL:D13690) fljA, Salmonella abortus-equi repressor for phase-1 flagellin gene; similar to (EMBL:AL117211) YPMT1.33, Yersinia pestis CO-92 putative transcriptional regulator from plasmid pMT1; similar to (EMBL:AF074611) Y1019, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569555.1	similar to (EMBL:AL117211) YPMT1, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1018, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569556.1	similar to (EMBL:AL117211) YPMT1.34A, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1017, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569557.1	similar to (EMBL:AL117211) YPMT1.35C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1015, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569558.1	similar to (EMBL:AL117211) YPMT1.36C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1012, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569568.1	similar to (EMBL:AE000251) ydfZ, Escherichia coli hypothetical protein
NP_569572.1	similar to (EMBL:M62866) Pseudomonas denitrificans hypothetical protein; similar to (EMBL:M24503) spoT, Escherichia coli guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
NP_569574.1	similar to (EMBL:L06296) eaa, from bacteriophage P22
NP_569576.1	similar to modification methylases (EMBL:U03474) Proteus vulgaris R-factor RTS1 restriction endonuclease PvuRTS1 I from plasmid R-factor Rts1; similar to (EMBL:U60283) traG1, Serratia marcescens putative restriction methylase from plasmid R478; possible bifunctional protein
NP_569578.1	similar to (EMBL:U47336) roi, bacteriophage HK022 DNA-binding protein; similar to Shiga-toxin phage protein (EMBL:AF034975) roi, bacteriophage H19B
NP_569581.1	similar to (EMBL:X57159) rnhA, Salmonella typhimurium ribonuclease HI
NP_569584.1	similar to hypothetical proteins from bacteriophage (EMBL:AP000363) bacteriophage VT2-Sa hypothetical protein; similar to (EMBL:J05393) bacteriophage T1 DNA N-6-adenine-methyltransferase
NP_569585.1	similar to (EMBL:M74122) pspA, Streptococcus pneumoniae surface protein A precursor
NP_569586.1	similar to DNA polymerase III epsilon subunit (EMBL:U44090) dnaQ, Salmonella typhimurium DNA polymerase III epsilon subunit
NP_569589.1	similar to (EMBL:Z21672) dhfRXII, Escherichia coli dihydrofolate reductase TYPE XII (trimethoprim resistance protein) from plasmid pEH1
NP_569591.1	similar to (EMBL:J01710) thyA, Escherichia coli thymidylate synthase; contains two insertions relative to similar proteins
NP_569593.1	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA
NP_569594.1	Catalyzes the rate-limiting step in dNTP synthesis
NP_569595.1	similar to (EMBL:AL117211) YPMT1.38C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1010, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569596.1	similar to (EMBL:AL117211) YPMT1.39C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1009, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569597.1	similar to (EMBL:X01804) gp46, bacteriophage T4 exonuclease subunit 2; similar to (EMBL:AL117211) YPMT1.40C, Yersinia pestis CO-92 possible exonuclease subunit 2 from plasmid pMT1; similar to (EMBL:AF074611) Y1008, Yersinia pestis KIM5 putative exonuclease from plasmid pMT1
NP_569598.1	similar to (EMBL:AL117211) YPMT1.40AC, Yersinia pestis CO-92 hypothetical protein; similar to (EMBL:AF074611) Y1007, Yersinia pestis KIM5 hypothetical protein
NP_569599.1	similarity to (EMBL:X01804) g47, bacteriophage T4 exonuclease subunit 1; similar to(EMBL:AL117211) YPMT1.41C, Yersinia pestis CO-92 possible exonuclease subunit 1 from plasmid pMT1; similar to (EMBL:AF074611) Y1006, Yersinia pestis KIM5 hypothetical protein from plasmdi pMT1
NP_569602.1	similar to (EMBL:AL117211) YPMT1.43C, Yersinia pestis CO-92 hypothetical protein from plasmid pMT1; similar to (EMBL:AF074611) Y1002, Yersinia pestis KIM5 hypothetical protein from plasmid pMT1
NP_569603.1	similar to (EMBL:L01255) repA, Escherichia coli replication protein A from IncFI plasmid; similar to (EMBL:AL117211) YPMT1.44, Yersinia pestis CO-92 putative replication protein A from plasmid pMT1; similar to (EMBL:AF053947) repA, Yersinia pestis KIM5 repA homolog from plasmid pMT1