-- dump date 20140620_053947 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 423368000001 SEQ_END SEQ_END NC_009140.1 176473 176473 DR NC_009140.1; contig end 176473..176473 Salmonella enterica subsp. enterica serovar Newport str. SL254 423368000002 SEQ_END SEQ_END NC_011079.1 3605 3605 DR NC_011079.1; contig end 3605..3605 Salmonella enterica subsp. enterica serovar Newport str. SL254 423368000003 SEQ_END SEQ_END NC_011080.1 4827641 4827641 DR NC_011080.1; contig end 4827641..4827641 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101880.1 CDS SNSL254_pSN254_0001 NC_009140.1 323 862 D hypothetical protein 323..862 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101881.1 CDS SNSL254_pSN254_0002 NC_009140.1 867 1154 D hypothetical protein 867..1154 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101882.1 CDS repA NC_009140.1 1175 2239 D identified by similarity to GB:CAA52023.1; plasmid replication protein RepA 1175..2239 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101883.1 CDS SNSL254_pSN254_0004 NC_009140.1 2585 2866 D hypothetical protein 2585..2866 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101884.1 CDS SNSL254_pSN254_0005 NC_009140.1 3276 3710 R hypothetical protein complement(3276..3710) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101885.1 CDS SNSL254_pSN254_0006 NC_009140.1 3728 4711 R identified by match to protein family HMM PF01507; phosphoadenosine phosphosulfate reductase family protein complement(3728..4711) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101886.1 CDS SNSL254_pSN254_0007 NC_009140.1 5307 5720 D identified by similarity to GB:BAB77476.1; hypothetical protein 5307..5720 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101887.1 CDS SNSL254_pSN254_0008 NC_009140.1 5725 6246 D identified by similarity to GB:CAE51711.1; hypothetical protein 5725..6246 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101888.1 CDS SNSL254_pSN254_0009 NC_009140.1 6249 6770 D hypothetical protein 6249..6770 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101889.1 CDS SNSL254_pSN254_0010 NC_009140.1 6867 7340 D hypothetical protein 6867..7340 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101890.1 CDS SNSL254_pSN254_0011 NC_009140.1 7351 7644 D hypothetical protein 7351..7644 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101891.1 CDS SNSL254_pSN254_0012 NC_009140.1 7649 8503 D hypothetical protein 7649..8503 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101892.1 CDS SNSL254_pSN254_0013 NC_009140.1 8485 9462 D identified by match to protein family HMM PF01343; signal peptide peptidase SppA domain-containing protein 8485..9462 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101893.1 CDS SNSL254_pSN254_0014 NC_009140.1 9478 10338 D identified by match to protein family HMM PF01323; DSBA-like thioredoxin domain-containing protein 9478..10338 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101894.1 CDS SNSL254_pSN254_0015 NC_009140.1 10372 10800 D lipoprotein 10372..10800 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101895.1 CDS SNSL254_pSN254_0016 NC_009140.1 10857 11216 D hypothetical protein 10857..11216 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101896.1 CDS SNSL254_pSN254_0017 NC_009140.1 11216 11662 D hypothetical protein 11216..11662 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101897.1 CDS SNSL254_pSN254_0018 NC_009140.1 11659 12177 D hypothetical protein 11659..12177 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101898.1 CDS SNSL254_pSN254_0019 NC_009140.1 12177 12407 D hypothetical protein 12177..12407 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101899.1 CDS SNSL254_pSN254_0020 NC_009140.1 12394 13251 D identified by similarity to GB:BAC41575.1; hypothetical protein 12394..13251 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101900.1 CDS SNSL254_pSN254_0021 NC_009140.1 13482 14009 D identified by match to protein family HMM PF00565; nuclease 13482..14009 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101901.1 CDS hup NC_009140.1 14067 14339 D identified by match to protein family HMM PF00216; DNA-binding protein HU 14067..14339 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101902.1 CDS SNSL254_pSN254_0023 NC_009140.1 14427 14720 D identified by similarity to GB:AAN87633.1; hypothetical protein 14427..14720 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101903.1 CDS SNSL254_pSN254_0024 NC_009140.1 14747 15049 R identified by similarity to GB:AAT09653.1; hypothetical protein complement(14747..15049) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101904.1 CDS SNSL254_pSN254_0025 NC_009140.1 15054 15404 R identified by similarity to GB:CAE12736.1; hypothetical protein complement(15054..15404) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101905.1 CDS SNSL254_pSN254_0026 NC_009140.1 15567 16115 D hypothetical protein 15567..16115 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101906.1 CDS SNSL254_pSN254_0027 NC_009140.1 16456 16650 D hypothetical protein 16456..16650 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101907.1 CDS SNSL254_pSN254_0028 NC_009140.1 16661 17032 D hypothetical protein 16661..17032 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101908.1 CDS SNSL254_pSN254_0029 NC_009140.1 17025 17495 D hypothetical protein 17025..17495 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101909.1 CDS SNSL254_pSN254_0030 NC_009140.1 17510 17845 R hypothetical protein complement(17510..17845) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101910.1 CDS SNSL254_pSN254_0031 NC_009140.1 17942 18430 D identified by similarity to GB:AAV97052.1|; match to protein family HMM PF07799; hypothetical protein 17942..18430 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101911.1 CDS SNSL254_pSN254_0032 NC_009140.1 18433 18930 D hypothetical protein 18433..18930 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101912.1 CDS insB1 NC_009140.1 19145 19867 R identified by match to protein family HMM PF00665; transposase InsB1 for insertion sequence IS26 complement(19145..19867) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101913.1 CDS SNSL254_pSN254_0034 NC_009140.1 19896 20093 R hypothetical protein complement(19896..20093) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101914.1 CDS insB2 NC_009140.1 20382 21104 D identified by match to protein family HMM PF00665; transposase InsB2 for insertion sequence IS26 20382..21104 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101915.1 CDS SNSL254_pSN254_0036 NC_009140.1 21138 21629 R identified by similarity to GB:AAZ65818.1; hypothetical protein complement(21138..21629) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101916.1 CDS SNSL254_pSN254_0037 NC_009140.1 21736 22473 D identified by match to protein family HMM PF00239; match to protein family HMM PF02796; resolvase 21736..22473 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101917.1 CDS insA NC_009140.1 22905 24398 D identified by match to protein family HMM PF04986; transposase InsA 22905..24398 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101918.1 CDS SNSL254_pSN254_0039 NC_009140.1 24429 25313 D identified by similarity to GB:AAK64586.1; hypothetical protein 24429..25313 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101919.1 CDS floR NC_009140.1 25530 26744 D identified by similarity to GB:CAD57670.1; match to protein family HMM PF07690; match to protein family HMM TIGR00710; florfenicol/chloramphenicol resistance protein FloR 25530..26744 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101920.1 CDS SNSL254_pSN254_0041 NC_009140.1 26772 27077 D identified by match to protein family HMM PF00126; LysR family transcriptional regulator 26772..27077 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101921.1 CDS tetA NC_009140.1 27344 28618 R identified by similarity to SP:P02982; match to protein family HMM PF07690; match to protein family HMM TIGR00880; tetracycline repressor protein TetA, class A complement(27344..28618) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101922.1 CDS tetR NC_009140.1 28622 29299 D identified by similarity to SP:P03038; match to protein family HMM PF00440; match to protein family HMM PF02909; tetracycline repressor protein R, class A 28622..29299 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101923.1 CDS SNSL254_pSN254_0044 NC_009140.1 29331 29573 R identified by similarity to GB:AAW58856.1; hypothetical protein complement(29331..29573) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101924.1 CDS strB NC_009140.1 29879 30709 R identified by match to protein family HMM PF04655; streptomycin resistance protein StrB complement(29879..30709) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101925.1 CDS strA NC_009140.1 30715 31518 R identified by match to protein family HMM PF01636; streptomycin resistance protein StrA complement(30715..31518) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101926.1 CDS sul2 NC_009140.1 31579 32394 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 2 complement(31579..32394) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101927.1 CDS SNSL254_pSN254_0048 NC_009140.1 32701 33012 D hypothetical protein 32701..33012 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101928.1 CDS SNSL254_pSN254_0049 NC_009140.1 33186 33971 D identified by match to protein family HMM PF01656; ParA partition protein 33186..33971 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101929.1 CDS SNSL254_pSN254_0050 NC_009140.1 33975 35156 D identified by match to protein family HMM PF02195; match to protein family HMM PF08535; match to protein family HMM TIGR00180; ParB partition protein 33975..35156 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101930.1 CDS SNSL254_pSN254_0051 NC_009140.1 35199 35477 D identified by similarity to GB:CAG19260.1; hypothetical protein 35199..35477 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101931.1 CDS SNSL254_pSN254_0052 NC_009140.1 35530 36165 R hypothetical protein complement(35530..36165) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101932.1 CDS SNSL254_pSN254_0053 NC_009140.1 36727 37104 D identified by similarity to GB:BAC41599.1; hypothetical protein 36727..37104 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101933.1 CDS SNSL254_pSN254_0054 NC_009140.1 37353 38027 D hypothetical protein 37353..38027 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101934.1 CDS SNSL254_pSN254_0055 NC_009140.1 38020 38526 D hypothetical protein 38020..38526 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101935.1 CDS SNSL254_pSN254_0056 NC_009140.1 38532 38843 D hypothetical protein 38532..38843 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101936.1 CDS SNSL254_pSN254_0057 NC_009140.1 38852 39352 D identified by similarity to GB:BAB93678.1; hypothetical protein 38852..39352 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101937.1 CDS SNSL254_pSN254_0058 NC_009140.1 39356 40783 D identified by match to protein family HMM PF00145; C-5 cytosine-specific DNA methylase family protein 39356..40783 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101938.1 CDS SNSL254_pSN254_0059 NC_009140.1 40783 41439 D hypothetical protein 40783..41439 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101939.1 CDS SNSL254_pSN254_0060 NC_009140.1 41495 42112 D hypothetical protein 41495..42112 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101940.1 CDS SNSL254_pSN254_0061 NC_009140.1 42345 42623 D identified by similarity to GB:AAP44279.1; hypothetical protein 42345..42623 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101941.1 CDS SNSL254_pSN254_0062 NC_009140.1 42714 43202 R hypothetical protein complement(42714..43202) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101942.1 CDS topB NC_009140.1 43217 45409 R identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01056; DNA topoisomerase III complement(43217..45409) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101943.1 CDS SNSL254_pSN254_0064 NC_009140.1 45624 46241 R lipoprotein complement(45624..46241) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101944.1 CDS traI NC_009140.1 46409 49381 D identified by similarity to GB:AAL59675.1; match to protein family HMM PF07514; type IV conjugative transfer system protein TraI 46409..49381 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101945.1 CDS traD NC_009140.1 49378 51243 D identified by similarity to GB:AAL59680.1; type IV conjugative transfer system protein TraD 49378..51243 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101946.1 CDS SNSL254_pSN254_0067 NC_009140.1 51254 51838 D hypothetical protein 51254..51838 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101947.1 CDS SNSL254_pSN254_0068 NC_009140.1 51795 52424 D identified by similarity to GB:AAL59721.1; type IV conjugative transfer system coupling factor 51795..52424 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101948.1 CDS SNSL254_pSN254_0069 NC_009140.1 52434 52880 D hypothetical protein 52434..52880 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101949.1 CDS SNSL254_pSN254_0070 NC_009140.1 52890 53267 D hypothetical protein 52890..53267 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101950.1 CDS SNSL254_pSN254_0071 NC_009140.1 53339 53929 D hypothetical protein 53339..53929 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101951.1 CDS SNSL254_pSN254_0072 NC_009140.1 54265 54630 D hypothetical protein 54265..54630 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101952.1 CDS traL NC_009140.1 54775 55056 D identified by similarity to GB:AAL59674.1; match to protein family HMM TIGR02762; type IV conjugative transfer system protein TraL 54775..55056 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101953.1 CDS traE NC_009140.1 55053 55679 D identified by similarity to GB:AAL59679.1; type IV conjugative transfer system protein TraE 55053..55679 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101954.1 CDS SNSL254_pSN254_0075 NC_009140.1 55663 56580 D identified by similarity to GB:AAM08021.1; hypothetical protein 55663..56580 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101955.1 CDS traB NC_009140.1 56577 57893 D identified by similarity to GB:AAL59682.1; match to protein family HMM PF06447; type IV conjugative transfer system protein TraB 56577..57893 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101956.1 CDS traV NC_009140.1 57890 58468 D identified by similarity to GB:AAL59672.1; match to protein family HMM TIGR02747; type IV conjugative transfer system protein TraV 57890..58468 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101957.1 CDS traA NC_009140.1 58481 58864 D identified by similarity to GB:AAL59683.1; type IV conjugative transfer system protein TraA 58481..58864 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101958.1 CDS SNSL254_pSN254_0081 NC_009140.1 60806 61513 R identified by similarity to GB:AAM08034.1; hypothetical protein complement(60806..61513) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101959.1 CDS SNSL254_pSN254_0082 NC_009140.1 61662 67148 R hypothetical protein complement(61662..67148) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101960.1 CDS sugE1 NC_009140.1 67753 68193 D identified by similarity to SP:P69937; match to protein family HMM PF00893; quaternary ammonium compound-resistance protein SugE1 67753..68193 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101961.1 CDS blc1 NC_009140.1 68190 68723 R lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc complement(68190..68723) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101962.1 CDS ampC NC_009140.1 68817 70046 R identified by similarity to GB:AAX86815.1; match to protein family HMM PF00144; beta-lactamase complement(68817..70046) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101963.1 CDS insC3 NC_009140.1 70781 72043 D identified by match to protein family HMM PF01609; transposase InsC3 for insertion sequence ISEc9 70781..72043 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101964.1 CDS ampC NC_009140.1 72283 73512 D identified by similarity to GB:AAX86815.1; match to protein family HMM PF00144; beta-lactamase 72283..73512 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101965.1 CDS blc2 NC_009140.1 73606 74139 D lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 73606..74139 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101966.1 CDS sugE2 NC_009140.1 74136 74576 R identified by similarity to SP:P69937; match to protein family HMM PF00893; quaternary ammonium compound-resistance protein SugE2 complement(74136..74576) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101967.1 CDS SNSL254_pSN254_0093 NC_009140.1 75181 80667 D hypothetical protein 75181..80667 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101968.1 CDS SNSL254_pSN254_0094 NC_009140.1 80816 81523 D identified by similarity to GB:AAM08034.1; hypothetical protein 80816..81523 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101969.1 CDS traC NC_009140.1 81520 83967 D identified by match to protein family HMM TIGR02746; type IV conjugative transfer system protein TraC 81520..83967 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101970.1 CDS SNSL254_pSN254_0096 NC_009140.1 83982 84299 D hypothetical protein 83982..84299 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101971.1 CDS SNSL254_pSN254_0097 NC_009140.1 84296 84826 D identified by similarity to GB:AAL59670.1; type IV conjugative transfer system signal peptidase 84296..84826 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101972.1 CDS traW NC_009140.1 84789 86054 D identified by similarity to GB:AAL59671.1; type IV conjugative transfer system protein TraW 84789..86054 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101973.1 CDS SNSL254_pSN254_0099 NC_009140.1 86051 86722 D identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase domain-containing protein 86051..86722 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101974.1 CDS traU NC_009140.1 86719 87726 D identified by match to protein family HMM PF06834; type IV conjugative transfer system protein TraU 86719..87726 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101975.1 CDS traN NC_009140.1 87842 90637 D TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 87842..90637 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101976.1 CDS SNSL254_pSN254_0102 NC_009140.1 90676 91536 R lipoprotein complement(90676..91536) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101977.1 CDS SNSL254_pSN254_0103 NC_009140.1 91659 92300 R identified by similarity to GB:AAM08043.1; hypothetical protein complement(91659..92300) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101978.1 CDS SNSL254_pSN254_0104 NC_009140.1 92595 92915 D hypothetical protein 92595..92915 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101979.1 CDS SNSL254_pSN254_0105 NC_009140.1 93219 93404 D hypothetical protein 93219..93404 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101980.1 CDS SNSL254_pSN254_0106 NC_009140.1 93624 94592 D identified by match to protein family HMM PF07728; AAA family ATPase 93624..94592 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101981.1 CDS SNSL254_pSN254_0107 NC_009140.1 94603 95511 D hypothetical protein 94603..95511 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101982.1 CDS ssb NC_009140.1 95575 96102 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand DNA-binding protein 95575..96102 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101983.1 CDS bet NC_009140.1 96197 97186 D identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913; phage recombination protein Bet 96197..97186 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101984.1 CDS SNSL254_pSN254_0110 NC_009140.1 97249 98259 D identified by match to protein family HMM TIGR03033; phage-type endonuclease 97249..98259 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101985.1 CDS SNSL254_pSN254_0111 NC_009140.1 98459 99736 D identified by similarity to GB:AAL59707.1; hypothetical protein 98459..99736 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101986.1 CDS SNSL254_pSN254_0112 NC_009140.1 99821 101617 D identified by match to protein family HMM PF00092; von Willebrand factor type A domain-containing protein 99821..101617 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101987.1 CDS SNSL254_pSN254_0113 NC_009140.1 101679 102014 D hypothetical protein 101679..102014 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101988.1 CDS SNSL254_pSN254_0114 NC_009140.1 102279 102818 D hypothetical protein 102279..102818 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101989.1 CDS SNSL254_pSN254_0115 NC_009140.1 102909 103409 D hypothetical protein 102909..103409 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101990.1 CDS SNSL254_pSN254_0116 NC_009140.1 103468 104367 D hypothetical protein 103468..104367 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101991.1 CDS SNSL254_pSN254_0117 NC_009140.1 104433 104657 D identified by match to protein family HMM PF00111; 2Fe-2S-binding domain-containing protein 104433..104657 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101992.1 CDS SNSL254_pSN254_0118 NC_009140.1 104719 105108 D hypothetical protein 104719..105108 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101993.1 CDS SNSL254_pSN254_0119 NC_009140.1 105098 105550 D hypothetical protein 105098..105550 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101994.1 CDS SNSL254_pSN254_0120 NC_009140.1 105555 105830 D hypothetical protein 105555..105830 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101995.1 CDS SNSL254_pSN254_0121 NC_009140.1 105888 106079 D hypothetical protein 105888..106079 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101996.1 CDS SNSL254_pSN254_0122 NC_009140.1 106148 106501 D identified by similarity to GB:AAM08083.1; hypothetical protein 106148..106501 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101997.1 CDS SNSL254_pSN254_0123 NC_009140.1 106693 107037 D hypothetical protein 106693..107037 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101998.1 CDS SNSL254_pSN254_0124 NC_009140.1 107115 107417 D hypothetical protein 107115..107417 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001101999.1 CDS SNSL254_pSN254_0125 NC_009140.1 107495 109120 D identified by match to protein family HMM PF00145; C-5 cytosine-specific DNA methylase 107495..109120 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102000.1 CDS SNSL254_pSN254_0126 NC_009140.1 109181 109612 D hypothetical protein 109181..109612 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102001.1 CDS SNSL254_pSN254_0127 NC_009140.1 109686 110240 D hypothetical protein 109686..110240 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102002.1 CDS SNSL254_pSN254_0128 NC_009140.1 110473 110859 D hypothetical protein 110473..110859 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102003.1 CDS SNSL254_pSN254_0129 NC_009140.1 110947 113400 D identified by similarity to GB:CAE51790.1; hypothetical protein 110947..113400 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102004.1 CDS SNSL254_pSN254_0130 NC_009140.1 113602 113805 D hypothetical protein 113602..113805 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102005.1 CDS SNSL254_pSN254_0131 NC_009140.1 113877 114482 D identified by similarity to SP:P76491; 5'-nucleotidase 113877..114482 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102006.1 CDS SNSL254_pSN254_0132 NC_009140.1 114475 114744 D identified by similarity to GB:AAR12555.1; hypothetical protein 114475..114744 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102007.1 CDS SNSL254_pSN254_0133 NC_009140.1 114758 114976 D hypothetical protein 114758..114976 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102008.1 CDS SNSL254_pSN254_0134 NC_009140.1 115050 115607 D hypothetical protein 115050..115607 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102009.1 CDS SNSL254_pSN254_0135 NC_009140.1 115649 116533 D identified by similarity to GB:AAK16082.1; hypothetical protein 115649..116533 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102010.1 CDS SNSL254_pSN254_0136 NC_009140.1 116992 117378 D hypothetical protein 116992..117378 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102011.1 CDS SNSL254_pSN254_0137 NC_009140.1 117556 119283 D identified by similarity to GB:AAM08013.1; match to protein family HMM PF08273; hypothetical protein 117556..119283 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102012.1 CDS SNSL254_pSN254_0138 NC_009140.1 119270 119548 D hypothetical protein 119270..119548 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102013.1 CDS SNSL254_pSN254_0139 NC_009140.1 119621 119842 D hypothetical protein 119621..119842 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102014.1 CDS insD1 NC_009140.1 120024 121028 R identified by match to protein family HMM PF02371; transposase InsD1 for insertion sequence IS4321R complement(120024..121028) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102015.1 CDS tnpA NC_009140.1 121107 124079 R identified by match to protein family HMM PF01526; transposon Tn21 transposase TnpA complement(121107..124079) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102016.1 CDS intI1 NC_009140.1 124945 125958 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02249; integrase IntI1 for transposon Tn21 complement(124945..125958) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102017.1 CDS aadA NC_009140.1 125888 126895 D streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 125888..126895 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102018.1 CDS aacC NC_009140.1 127059 127961 D identified by similarity to GB:AAA16194.1; match to protein family HMM PF02522; aminoglycoside 3-N-acetyltransferase 127059..127961 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102019.1 CDS groS NC_009140.1 128168 128488 D identified by similarity to SP:P31295; match to protein family HMM PF00166; molecular chaperone GroES 128168..128488 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102020.1 CDS groEL NC_009140.1 128544 130181 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 128544..130181 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102021.1 CDS insE NC_009140.1 130370 131899 D identified by match to protein family HMM PF04986; transposase InsE 130370..131899 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102022.1 CDS insF NC_009140.1 132167 133402 D identified by match to protein family HMM PF00872; transposase InsF 132167..133402 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102023.1 CDS qacEdelta1 NC_009140.1 133620 133967 D identified by similarity to SP:P0AGC9; match to protein family HMM PF00893; quaternary ammonium compound-resistance protein QacEdelta1 133620..133967 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102024.1 CDS sul1 NC_009140.1 133961 134800 D identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 133961..134800 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102025.1 CDS SNSL254_pSN254_0152 NC_009140.1 134928 135428 D identified by similarity to GB:AAZ95875.1; match to protein family HMM PF00583; hypothetical protein 134928..135428 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102026.1 CDS SNSL254_pSN254_0153 NC_009140.1 135452 135739 D identified by similarity to GB:CAE50482.1; hypothetical protein 135452..135739 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102027.1 CDS istB NC_009140.1 135963 136745 R identified by match to protein family HMM PF01695; transposition protein IstB for insertion sequence IS1326 complement(135963..136745) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102028.1 CDS istA NC_009140.1 136735 138258 R identified by similarity to SP:Q46087; match to protein family HMM PF00665; transposase IstA for insertion sequence IS1326 complement(136735..138258) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102029.1 CDS insG NC_009140.1 138381 139925 D identified by match to protein family HMM PF00665; match to protein family HMM PF01527; transposase InsG for insertion sequence IS1353 138381..139925 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102030.1 CDS tniB NC_009140.1 139976 140836 R identified by match to protein family HMM PF05621; transposition protein TniB complement(139976..140836) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102031.1 CDS insB3 NC_009140.1 141327 142049 R identified by match to protein family HMM PF00665; transposase InsB3 for insertion sequence IS26 complement(141327..142049) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102032.1 CDS insB4 NC_009140.1 142094 142816 R identified by match to protein family HMM PF00665; transposase InsB4 for insertion sequence IS26 complement(142094..142816) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102033.1 CDS urf2 NC_009140.1 143008 143997 R identified by match to protein family HMM PF00563; EAL domain-containing protein Urf2 complement(143008..143997) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102034.1 CDS merE NC_009140.1 143994 144230 R identified by match to protein family HMM PF05052; mercury resistance protein complement(143994..144230) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102035.1 CDS merD NC_009140.1 144227 144592 R identified by match to protein family HMM PF00376; match to protein family HMM TIGR02054; MerD family transcriptional regulator complement(144227..144592) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102036.1 CDS merB NC_009140.1 144704 145342 R cleaves the carbon-mercury bond of organomercuric compounds; alkylmercury lyase complement(144704..145342) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102037.1 CDS merA NC_009140.1 145357 147042 R identified by match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR02053; mercuric reductase complement(145357..147042) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102038.1 CDS merP NC_009140.1 147114 147389 R identified by match to protein family HMM PF00403; match to protein family HMM TIGR02052; mercuric transport protein periplasmic component MerP complement(147114..147389) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102039.1 CDS merT NC_009140.1 147405 147755 R identified by match to protein family HMM PF02411; mercuric transport protein complement(147405..147755) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102040.1 CDS merR NC_009140.1 147827 148261 D identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02051; transcriptional regulator MerR 147827..148261 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102041.1 CDS insD2 NC_009140.1 148361 149365 D identified by match to protein family HMM PF02371; transposase InsD2 for insertion sequence IS4321L 148361..149365 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102042.1 CDS SNSL254_pSN254_0170 NC_009140.1 149771 149887 D hypothetical protein 149771..149887 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102043.1 CDS SNSL254_pSN254_0171 NC_009140.1 149981 150382 D hypothetical protein 149981..150382 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102044.1 CDS SNSL254_pSN254_0172 NC_009140.1 150496 151221 D identified by similarity to GB:AAL59702.1; hypothetical protein 150496..151221 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102045.1 CDS SNSL254_pSN254_0173 NC_009140.1 151462 155607 D identified by match to protein family HMM PF03527; match to protein family HMM PF05593; match to protein family HMM TIGR01643; Rhs family protein 151462..155607 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102046.1 CDS SNSL254_pSN254_0174 NC_009140.1 155597 156019 D hypothetical protein 155597..156019 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102047.1 CDS SNSL254_pSN254_0175 NC_009140.1 156454 156642 D hypothetical protein 156454..156642 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102048.1 CDS SNSL254_pSN254_0176 NC_009140.1 156658 157260 R hypothetical protein complement(156658..157260) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102049.1 CDS SNSL254_pSN254_0177 NC_009140.1 157530 157811 D identified by similarity to GB:BAB93677.1; hypothetical protein 157530..157811 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102050.1 CDS SNSL254_pSN254_0178 NC_009140.1 157830 158117 D hypothetical protein 157830..158117 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102051.1 CDS SNSL254_pSN254_0179 NC_009140.1 158110 158646 D identified by similarity to GB:BAC41610.1; hypothetical protein 158110..158646 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102052.1 CDS SNSL254_pSN254_0180 NC_009140.1 158649 159659 D identified by match to protein family HMM PF00589; phage integrase 158649..159659 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102053.1 CDS SNSL254_pSN254_0181 NC_009140.1 159664 160533 D identified by match to protein family HMM PF00929; exonuclease 159664..160533 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102054.1 CDS SNSL254_pSN254_0182 NC_009140.1 160530 161021 D identified by similarity to GB:BAB93565.1; hypothetical protein 160530..161021 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102055.1 CDS SNSL254_pSN254_0183 NC_009140.1 161348 162223 D binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 161348..162223 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102056.1 CDS SNSL254_pSN254_0184 NC_009140.1 162385 163425 D hypothetical protein 162385..163425 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102057.1 CDS SNSL254_pSN254_0185 NC_009140.1 163425 163703 D hypothetical protein 163425..163703 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102058.1 CDS SNSL254_pSN254_0186 NC_009140.1 163712 165223 D identified by similarity to GB:CAG73527.1; hypothetical protein 163712..165223 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102059.1 CDS traF NC_009140.1 165346 166374 D identified by match to protein family HMM TIGR02740; type IV conjugative transfer system protein TraF 165346..166374 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102060.1 CDS traH NC_009140.1 166376 167809 D identified by match to protein family HMM PF06122; type IV conjugative transfer system protein TraH 166376..167809 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102061.1 CDS traG NC_009140.1 167822 171436 D identified by match to protein family HMM PF07916; type IV conjugative transfer system protein TraG 167822..171436 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102062.1 CDS SNSL254_pSN254_0190 NC_009140.1 171474 171836 R hypothetical protein complement(171474..171836) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102063.1 CDS SNSL254_pSN254_0191 NC_009140.1 172552 172824 D identified by similarity to GB:AAQ94440.1; hypothetical protein 172552..172824 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102064.1 CDS SNSL254_pSN254_0192 NC_009140.1 172824 173357 D identified by match to protein family HMM PF01464; transglycosylase 172824..173357 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102065.1 CDS SNSL254_pSN254_0193 NC_009140.1 173368 173976 D hypothetical protein 173368..173976 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102066.1 CDS SNSL254_pSN254_0194 NC_009140.1 173973 174257 D hypothetical protein 173973..174257 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102067.1 CDS SNSL254_pSN254_0196 NC_009140.1 174583 175002 R hypothetical protein complement(174583..175002) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102068.1 CDS SNSL254_pSN254_0197 NC_009140.1 175004 175297 R hypothetical protein complement(175004..175297) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_001102069.1 CDS SNSL254_pSN254_0198 NC_009140.1 175314 176297 R identified by similarity to GB:AAL59744.1; hypothetical protein complement(175314..176297) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039226.1 CDS SNSL254_B0001 NC_011079.1 237 614 R identified by glimmer; putative; hypothetical protein complement(237..614) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039227.1 CDS SNSL254_B0002 NC_011079.1 744 2276 D hypothetical protein 744..2276 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039228.1 CDS SNSL254_B0005 NC_011079.1 3182 3331 D hypothetical protein 3182..3331 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039229.1 CDS thrA NC_011080.1 337 2799 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 337..2799 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039230.1 CDS thrB NC_011080.1 2801 3730 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2801..3730 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039231.1 CDS thrC NC_011080.1 3734 5020 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3734..5020 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039232.1 CDS SNSL254_A0005 NC_011080.1 5114 5887 R identified by match to protein family HMM PF03883; hypothetical protein complement(5114..5887) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039233.1 CDS SNSL254_A0006 NC_011080.1 5966 7396 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino-acid carrier protein AlsT complement(5966..7396) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039234.1 CDS tal2 NC_011080.1 7665 8618 D identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase B 7665..8618 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039235.1 CDS mogA NC_011080.1 8729 9319 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 8729..9319 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039236.1 CDS SNSL254_A0009 NC_011080.1 9376 9942 R identified by match to protein family HMM PF01184; hypothetical protein complement(9376..9942) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039237.1 CDS SNSL254_A0010 NC_011080.1 10092 10805 R identified by match to protein family HMM PF03667; hypothetical protein complement(10092..10805) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039238.1 CDS SNSL254_A0011 NC_011080.1 10841 11245 R hypothetical protein complement(10841..11245) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039239.1 CDS SNSL254_A0012 NC_011080.1 11300 11425 D identified by glimmer; hypothetical protein 11300..11425 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039240.1 CDS dnaK NC_011080.1 11594 13510 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 11594..13510 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039241.1 CDS dnaJ NC_011080.1 13596 14735 D 'chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion'; molecular chaperone DnaJ 13596..14735 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039243.1 CDS SNSL254_A0016 NC_011080.1 15020 15967 D identified by match to protein family HMM PF00126; transcriptional regulator 15020..15967 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039244.1 CDS SNSL254_A0017 NC_011080.1 16136 16438 D bacteriophage protein 16136..16438 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039245.1 CDS SNSL254_A0018 NC_011080.1 16499 17020 R identified by match to protein family HMM PF05838; match to protein family HMM PF09374; hypothetical protein complement(16499..17020) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039246.1 CDS SNSL254_A0019 NC_011080.1 17037 17480 R hypothetical protein complement(17037..17480) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039247.1 CDS SNSL254_A0020 NC_011080.1 17861 19960 D identified by match to protein family HMM PF00704; match to protein family HMM PF02839; exochitinase 17861..19960 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039248.1 CDS SNSL254_A0021 NC_011080.1 20052 23048 D hydroxymethyltransferase 20052..23048 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039249.1 CDS SNSL254_A0022 NC_011080.1 23329 24033 D hypothetical protein 23329..24033 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039250.1 CDS SNSL254_A0023 NC_011080.1 24462 25004 D identified by match to protein family HMM PF00419; fimbrial subunit 24462..25004 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039251.1 CDS SNSL254_A0024 NC_011080.1 25105 25791 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 25105..25791 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039252.1 CDS SNSL254_A0025 NC_011080.1 25751 28417 D identified by match to protein family HMM PF00577; outer membrane usher protein FimD 25751..28417 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039253.1 CDS SNSL254_A0026 NC_011080.1 28418 29425 D identified by match to protein family HMM PF00419; mannose binding protein FimH 28418..29425 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039254.1 CDS SNSL254_A0027 NC_011080.1 29465 29971 D identified by match to protein family HMM PF00419; fimbrial subunit 29465..29971 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039255.1 CDS SNSL254_A0028 NC_011080.1 29987 30505 D identified by match to protein family HMM PF00419; fimbrial subunit 29987..30505 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039256.1 CDS SNSL254_A0029 NC_011080.1 30471 31202 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone 30471..31202 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039257.1 CDS SNSL254_A0030 NC_011080.1 31267 32112 D identified by match to protein family HMM PF01323; hypothetical protein 31267..32112 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039258.1 CDS SNSL254_A0031 NC_011080.1 32151 32438 D hypothetical protein 32151..32438 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039259.1 CDS SNSL254_A0032 NC_011080.1 32538 32987 R hypothetical protein complement(32538..32987) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039260.1 CDS SNSL254_A0033 NC_011080.1 33357 34361 D identified by match to protein family HMM PF00126; transcriptional regulator 33357..34361 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083612.1 CDS SNSL254_A0034 NC_011080.1 34369 34809 R hypothetical protein complement(34369..34809) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039262.1 CDS SNSL254_A0036 NC_011080.1 35332 37050 D identified by match to protein family HMM PF05935; arylsulfotransferase 35332..37050 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039263.1 CDS SNSL254_A0037 NC_011080.1 37096 38658 R identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase complement(37096..38658) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039264.1 CDS SNSL254_A0038 NC_011080.1 38766 39527 R identified by match to protein family HMM PF07135; hypothetical protein complement(38766..39527) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039265.1 CDS SNSL254_A0039 NC_011080.1 40122 41615 D identified by match to protein family HMM PF00884; sulfatase 40122..41615 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039266.1 CDS SNSL254_A0040 NC_011080.1 41717 42904 D identified by match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 41717..42904 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039267.1 CDS SNSL254_A0041 NC_011080.1 42929 44176 D hypothetical protein 42929..44176 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039268.1 CDS SNSL254_A0042 NC_011080.1 44303 46018 D identified by match to protein family HMM PF05935; arylsulfotransferase 44303..46018 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039269.1 CDS nhaA NC_011080.1 46181 47347 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 46181..47347 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039270.1 CDS nhaR NC_011080.1 47415 48308 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 47415..48308 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039271.1 CDS SNSL254_A0045 NC_011080.1 48363 50402 R identified by match to protein family HMM PF01055; glycoside hydrolase complement(48363..50402) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039272.1 CDS SNSL254_A0046 NC_011080.1 50442 51857 R identified by match to protein family HMM TIGR00792; xylose-proton symporter complement(50442..51857) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039273.1 CDS rpsT NC_011080.1 52271 52534 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(52271..52534) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039274.1 CDS SNSL254_A0048 NC_011080.1 52709 52855 D hypothetical protein 52709..52855 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039275.1 CDS ribF NC_011080.1 52863 53801 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 52863..53801 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039276.1 CDS ileS NC_011080.1 53810 56680 D 'IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme'; isoleucyl-tRNA synthetase 53810..56680 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039277.1 CDS lspA NC_011080.1 56680 57180 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 56680..57180 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039278.1 CDS fkpB NC_011080.1 57335 57784 D identified by match to protein family HMM PF00254; FKBP-type peptidylprolyl isomerase 57335..57784 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039279.1 CDS ispH NC_011080.1 57787 58737 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 57787..58737 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039280.1 CDS SNSL254_A0055 NC_011080.1 58849 59007 R identified by glimmer; hypothetical protein complement(58849..59007) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039281.1 CDS SNSL254_A0054 NC_011080.1 58988 60139 D nitrite reductase 58988..60139 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039282.1 CDS SNSL254_A0056 NC_011080.1 60155 61075 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 60155..61075 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039283.1 CDS SNSL254_A0057 NC_011080.1 61097 61783 R identified by match to protein family HMM PF00072; transcriptional regulator CitB complement(61097..61783) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039284.1 CDS SNSL254_A0058 NC_011080.1 61785 63443 R identified by match to protein family HMM PF02518; sensor kinase DpiB complement(61785..63443) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039285.1 CDS SNSL254_A0059 NC_011080.1 63539 64840 R identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta complement(63539..64840) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039286.1 CDS oadA NC_011080.1 64853 66628 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(64853..66628) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039287.1 CDS SNSL254_A0061 NC_011080.1 66644 66883 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(66644..66883) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039288.1 CDS SNSL254_A0062 NC_011080.1 67042 68382 R identified by match to protein family HMM PF03390; match to protein family HMM TIGR00783; citrate-sodium symporter complement(67042..68382) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039289.1 CDS citC NC_011080.1 68639 69670 D identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase 68639..69670 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039290.1 CDS citD NC_011080.1 69700 69993 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 69700..69993 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039291.1 CDS citE NC_011080.1 69990 70859 D identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta 69990..70859 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039292.1 CDS citF NC_011080.1 70870 72390 D identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha 70870..72390 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039293.1 CDS citX NC_011080.1 72390 72941 D identified by match to protein family HMM PF03802; match to protein family HMM TIGR03124; holo-ACP synthase CitX 72390..72941 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039294.1 CDS citG NC_011080.1 72919 73827 D identified by match to protein family HMM PF01874; match to protein family HMM TIGR03125; triphosphoribosyl-dephospho-CoA synthase CitG 72919..73827 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039295.1 CDS dapB NC_011080.1 74007 74828 D 'catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis'; dihydrodipicolinate reductase 74007..74828 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039296.1 CDS carA NC_011080.1 75690 76838 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 75690..76838 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039297.1 CDS carB NC_011080.1 76857 80084 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 76857..80084 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083613.1 CDS SNSL254_A0072 NC_011080.1 80358 80753 D transcriptional activatory protein CaiF 80358..80753 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039298.1 CDS SNSL254_A0073 NC_011080.1 80831 81427 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE complement(80831..81427) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039299.1 CDS SNSL254_A0074 NC_011080.1 81537 82322 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase complement(81537..82322) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039300.1 CDS caiC NC_011080.1 82376 83929 R identified by match to protein family HMM PF00501; crotonobetaine/carnitine-CoA ligase complement(82376..83929) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039301.1 CDS SNSL254_A0076 NC_011080.1 83992 85263 R 'catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine'; crotonobetainyl-CoA:carnitine CoA-transferase complement(83992..85263) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039302.1 CDS caiA NC_011080.1 85321 86463 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase complement(85321..86463) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039303.1 CDS caiT NC_011080.1 86498 88015 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter complement(86498..88015) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039305.1 CDS SNSL254_A0080 NC_011080.1 88243 88428 D hypothetical protein 88243..88428 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039306.1 CDS fixA NC_011080.1 88496 89266 D 'required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase'; electron transfer flavoprotein FixA 88496..89266 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039307.1 CDS fixB NC_011080.1 89282 90223 D involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 89282..90223 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039308.1 CDS fixC NC_011080.1 90273 91559 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 90273..91559 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039309.1 CDS SNSL254_A0084 NC_011080.1 91556 91843 D 4Fe-4S ferredoxin 91556..91843 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039310.1 CDS SNSL254_A0085 NC_011080.1 91924 93330 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; metabolite transport protein YaaU 91924..93330 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039311.1 CDS SNSL254_A0086 NC_011080.1 93419 93649 D identified by match to protein family HMM PF06004; hypothetical protein 93419..93649 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039312.1 CDS SNSL254_A0087 NC_011080.1 93943 94365 D hypothetical protein 93943..94365 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039313.1 CDS SNSL254_A0088 NC_011080.1 94589 94879 R identified by match to protein family HMM PF07338; hypothetical protein complement(94589..94879) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039314.1 CDS SNSL254_A0089 NC_011080.1 95777 97666 D identified by match to protein family HMM PF00884; match to protein family HMM TIGR01409; sulfatase 95777..97666 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039315.1 CDS kefF NC_011080.1 98220 98750 D 'Required for full activity of KefC, a potassium-proton antiporter'; glutathione-regulated potassium-efflux system ancillary protein KefF 98220..98750 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039316.1 CDS SNSL254_A0091 NC_011080.1 98743 100605 D transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 98743..100605 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039317.1 CDS folA NC_011080.1 100804 101283 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 100804..101283 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039318.1 CDS apaH NC_011080.1 101389 102237 R 'hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP'; diadenosine tetraphosphatase complement(101389..102237) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039319.1 CDS apaG NC_011080.1 102248 102625 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(102248..102625) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039320.1 CDS ksgA NC_011080.1 102628 103449 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(102628..103449) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039321.1 CDS pdxA NC_011080.1 103446 104435 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(103446..104435) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039322.1 CDS surA NC_011080.1 104435 105721 R 'Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB'; peptidyl-prolyl cis-trans isomerase SurA complement(104435..105721) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039323.1 CDS imp NC_011080.1 105775 108135 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(105775..108135) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039324.1 CDS SNSL254_A0099 NC_011080.1 108145 108306 R identified by glimmer; hypothetical protein complement(108145..108306) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039325.1 CDS djlA NC_011080.1 108389 109201 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 108389..109201 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039326.1 CDS SNSL254_A0101 NC_011080.1 109297 109956 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A complement(109297..109956) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039327.1 CDS rapA NC_011080.1 109968 112874 R 'transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA'; ATP-dependent helicase HepA complement(109968..112874) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039328.1 CDS SNSL254_A0103 NC_011080.1 113048 115399 R 'Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C'; DNA polymerase II complement(113048..115399) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039329.1 CDS SNSL254_A0104 NC_011080.1 115443 116063 R identified by match to protein family HMM PF02698; hypothetical protein complement(115443..116063) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039330.1 CDS SNSL254_A0105 NC_011080.1 116719 116982 R identified by glimmer; hypothetical protein complement(116719..116982) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039331.1 CDS SNSL254_A0107 NC_011080.1 118795 119019 D hypothetical protein 118795..119019 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039332.2 CDS araD NC_011080.1 119025 119720 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(119025..119720) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039333.1 CDS araA NC_011080.1 119861 121363 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase complement(119861..121363) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039334.1 CDS araB NC_011080.1 121374 123083 R catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase complement(121374..123083) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039335.1 CDS SNSL254_A0111 NC_011080.1 123424 124269 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 123424..124269 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039336.1 CDS SNSL254_A0112 NC_011080.1 124388 125155 D identified by match to protein family HMM PF09335; hypothetical protein 124388..125155 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039337.1 CDS thiQ NC_011080.1 125194 125901 R with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit complement(125194..125901) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039338.1 CDS thiP NC_011080.1 125885 127495 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(125885..127495) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039339.1 CDS tbpA NC_011080.1 127471 128454 R part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit complement(127471..128454) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039341.1 CDS sgrR NC_011080.1 128632 130290 R activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR complement(128632..130290) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039343.1 CDS leuD NC_011080.1 130840 131445 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(130840..131445) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039344.1 CDS leuC NC_011080.1 131456 132856 R 'dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate'; isopropylmalate isomerase large subunit complement(131456..132856) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039345.1 CDS leuB NC_011080.1 132859 133950 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(132859..133950) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039346.1 CDS leuA NC_011080.1 133950 135521 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(133950..135521) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039347.1 CDS leuO NC_011080.1 136352 137296 D activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 136352..137296 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039348.1 CDS ilvB NC_011080.1 137588 139342 D 'catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive'; acetolactate synthase 3 catalytic subunit 137588..139342 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039349.1 CDS ilvH NC_011080.1 139342 139836 D 'with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit'; acetolactate synthase 3 regulatory subunit 139342..139836 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039350.1 CDS fruR NC_011080.1 140120 141124 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 140120..141124 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039351.1 CDS mraZ NC_011080.1 141729 142187 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 141729..142187 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039352.1 CDS mraW NC_011080.1 142189 143130 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 142189..143130 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039353.1 CDS ftsL NC_011080.1 143127 143492 D membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 143127..143492 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039354.1 CDS ftsI NC_011080.1 143508 145274 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI 143508..145274 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039355.1 CDS murE NC_011080.1 145261 146748 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 145261..146748 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039356.1 CDS murF NC_011080.1 146745 148103 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 146745..148103 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039357.1 CDS mraY NC_011080.1 148097 149179 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 148097..149179 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039358.1 CDS murD NC_011080.1 149182 150498 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 149182..150498 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039359.1 CDS ftsW NC_011080.1 150498 151742 D integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 150498..151742 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039360.1 CDS murG NC_011080.1 151739 152806 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 151739..152806 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039361.1 CDS murC NC_011080.1 152925 154400 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 152925..154400 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039362.1 CDS ddl NC_011080.1 154393 155313 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 154393..155313 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039363.1 CDS ftsQ NC_011080.1 155315 156145 D involved in septum formation; cell division protein FtsQ 155315..156145 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039364.1 CDS ftsA NC_011080.1 156142 157404 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 156142..157404 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039365.1 CDS ftsZ NC_011080.1 157465 158616 D 'GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function'; cell division protein FtsZ 157465..158616 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039366.1 CDS lpxC NC_011080.1 158717 159634 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 158717..159634 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083614.1 CDS secM NC_011080.1 159912 160409 D SecA regulator SecM 159912..160409 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039367.1 CDS secA NC_011080.1 160471 163176 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 160471..163176 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039368.1 CDS SNSL254_A0149 NC_011080.1 163327 163722 D identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; nucleoside triphosphate pyrophosphohydrolase 163327..163722 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039369.1 CDS SNSL254_A0150 NC_011080.1 163756 163890 R aldo/keto reductase complement(163756..163890) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039370.1 CDS SNSL254_A0151 NC_011080.1 164044 164235 R identified by match to protein family HMM PF03884; zinc-binding protein complement(164044..164235) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039371.1 CDS SNSL254_A0152 NC_011080.1 164245 164988 R identified by match to protein family HMM PF07072; hypothetical protein complement(164245..164988) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039372.1 CDS coaE NC_011080.1 164988 165608 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(164988..165608) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039373.1 CDS guaC NC_011080.1 165834 166877 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 165834..166877 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039374.1 CDS SNSL254_A0155 NC_011080.1 166908 168110 R identified by match to protein family HMM PF00482; type IV pilin biogenesis protein complement(166908..168110) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039375.1 CDS SNSL254_A0156 NC_011080.1 168100 169485 R identified by match to protein family HMM PF00437; hypothetical protein complement(168100..169485) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039376.1 CDS SNSL254_A0157 NC_011080.1 169495 169932 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; major pilin subunit complement(169495..169932) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039377.1 CDS nadC NC_011080.1 170154 171047 R 'catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide'; quinolinate phosphoribosyltransferase complement(170154..171047) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039378.1 CDS SNSL254_A0159 NC_011080.1 171135 171698 D identified by match to protein family HMM PF01510; N-acetyl-anhydromuranmyl-L-alanine amidase 171135..171698 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039379.1 CDS SNSL254_A0160 NC_011080.1 171695 172549 D involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 171695..172549 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039380.1 CDS SNSL254_A0161 NC_011080.1 172641 173591 R identified by match to protein family HMM PF04616; alpha-N-arabinofuranosidase complement(172641..173591) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039381.1 CDS SNSL254_A0162 NC_011080.1 173591 174997 R identified by match to protein family HMM TIGR00792; Na+/galactoside symporter complement(173591..174997) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039382.1 CDS SNSL254_A0163 NC_011080.1 175161 176531 R identified by match to protein family HMM PF00324; aromatic amino acid transporter complement(175161..176531) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039383.1 CDS pdhR NC_011080.1 177097 177861 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 177097..177861 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039384.1 CDS aceE NC_011080.1 178021 180684 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 178021..180684 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039385.1 CDS aceF NC_011080.1 180699 182588 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 180699..182588 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039386.1 CDS lpdA NC_011080.1 182790 184214 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 182790..184214 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039387.1 CDS SNSL254_A0168 NC_011080.1 184292 184420 D identified by glimmer; hypothetical protein 184292..184420 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039388.1 CDS SNSL254_A0169 NC_011080.1 184503 184787 D hypothetical protein 184503..184787 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039389.1 CDS SNSL254_A0170 NC_011080.1 184825 185616 R hypothetical protein complement(184825..185616) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039390.1 CDS SNSL254_A0171 NC_011080.1 185629 187254 R hypothetical protein complement(185629..187254) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039391.1 CDS acnB NC_011080.1 187643 190240 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 187643..190240 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039392.1 CDS SNSL254_A0173 NC_011080.1 190280 190744 R might be involved in hypersensitivity to nitrofurzone; inner membrane protein complement(190280..190744) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039393.1 CDS SNSL254_A0174 NC_011080.1 191161 191484 R low molecular weight phosphotyrosine protein phosphatase complement(191161..191484) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039394.1 CDS SNSL254_A0175 NC_011080.1 191755 192117 D identified by match to protein family HMM PF06062; hypothetical protein 191755..192117 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039395.1 CDS SNSL254_A0176 NC_011080.1 192160 192273 D identified by glimmer; hypothetical protein 192160..192273 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039396.2 CDS SNSL254_A0177 NC_011080.1 192352 193305 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 192352..193305 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039397.1 CDS SNSL254_A0178 NC_011080.1 193302 194573 D identified by match to protein family HMM PF07005; hypothetical protein 193302..194573 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039398.1 CDS pdxA NC_011080.1 194563 195546 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 194563..195546 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039399.1 CDS SNSL254_A0180 NC_011080.1 195556 196323 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 195556..196323 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039400.1 CDS speD NC_011080.1 196353 197147 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(196353..197147) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039401.1 CDS speE NC_011080.1 197168 198028 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(197168..198028) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039402.1 CDS SNSL254_A0183 NC_011080.1 198135 198482 R hypothetical protein complement(198135..198482) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039403.1 CDS SNSL254_A0184 NC_011080.1 198684 200294 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 198684..200294 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039404.2 CDS gcd NC_011080.1 200372 202762 R identified by match to protein family HMM PF01011; match to protein family HMM TIGR03074; quinoprotein glucose dehydrogenase complement(200372..202762) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039405.1 CDS hpt NC_011080.1 202968 203504 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 202968..203504 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039406.1 CDS SNSL254_A0187 NC_011080.1 203562 204224 R catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase complement(203562..204224) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039407.1 CDS SNSL254_A0188 NC_011080.1 204333 205259 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 204333..205259 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039408.1 CDS SNSL254_A0189 NC_011080.1 205256 206026 D identified by match to protein family HMM PF01061; ABC transporter permease 205256..206026 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039409.1 CDS SNSL254_A0190 NC_011080.1 206143 207222 R identified by match to protein family HMM PF00419; fimbrial protein precurosr complement(206143..207222) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039410.1 CDS SNSL254_A0191 NC_011080.1 207231 209777 R identified by match to protein family HMM PF00577; outer membrane usher protein FimD complement(207231..209777) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039411.1 CDS SNSL254_A0192 NC_011080.1 209804 210487 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC complement(209804..210487) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039412.1 CDS SNSL254_A0193 NC_011080.1 210535 211074 R identified by match to protein family HMM PF00419; fimbrial subunit complement(210535..211074) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039413.1 CDS SNSL254_A0194 NC_011080.1 211289 211402 R identified by glimmer; hypothetical protein complement(211289..211402) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039414.1 CDS SNSL254_A0195 NC_011080.1 211444 211884 D identified by match to protein family HMM PF03610; PTS system transporter subunit IIA 211444..211884 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039415.1 CDS SNSL254_A0196 NC_011080.1 211946 213175 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 211946..213175 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039416.1 CDS panD NC_011080.1 213182 213562 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(213182..213562) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039417.1 CDS panC NC_011080.1 213657 214511 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(213657..214511) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039418.1 CDS panB NC_011080.1 214637 215428 R 'catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate'; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(214637..215428) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039419.1 CDS folK NC_011080.1 215549 216028 R 'catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP'; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(215549..216028) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039420.2 CDS pcnB NC_011080.1 216025 217443 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase complement(216025..217443) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039421.1 CDS SNSL254_A0202 NC_011080.1 217584 218525 R 'this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu'; glutamyl-Q tRNA(Asp) synthetase complement(217584..218525) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039422.1 CDS dksA NC_011080.1 218549 219004 R identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420; RNA polymerase-binding transcription factor complement(218549..219004) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039423.1 CDS sfsA NC_011080.1 219181 219885 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(219181..219885) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039424.1 CDS SNSL254_A0205 NC_011080.1 219902 220432 R identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase complement(219902..220432) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039425.1 CDS hrpB NC_011080.1 220460 222934 D similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 220460..222934 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039426.1 CDS mrcB NC_011080.1 223075 225597 D 'bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell'; penicillin-binding protein 1b 223075..225597 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039427.1 CDS SNSL254_A0208 NC_011080.1 225736 225876 R identified by glimmer; hypothetical protein complement(225736..225876) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039428.2 CDS fhuA NC_011080.1 225890 228079 D involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 225890..228079 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039429.1 CDS fhuC NC_011080.1 228128 228925 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 228128..228925 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039430.1 CDS SNSL254_A0211 NC_011080.1 228925 229815 D Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 228925..229815 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039431.1 CDS SNSL254_A0212 NC_011080.1 229812 231869 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 229812..231869 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039432.1 CDS SNSL254_A0213 NC_011080.1 231906 232112 D identified by glimmer; hypothetical protein 231906..232112 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039433.1 CDS SNSL254_A0214 NC_011080.1 232273 232398 R identified by glimmer; hypothetical protein complement(232273..232398) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039434.1 CDS SNSL254_A0215 NC_011080.1 232402 232593 D identified by glimmer; hypothetical protein 232402..232593 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039435.1 CDS SNSL254_A0216 NC_011080.1 232810 233370 D identified by match to protein family HMM PF00419; fimbrial subunit 232810..233370 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039436.1 CDS SNSL254_A0217 NC_011080.1 233456 236113 D identified by match to protein family HMM PF00577; fimbrial usher protein 233456..236113 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039437.1 CDS SNSL254_A0218 NC_011080.1 236131 236883 D identified by match to protein family HMM PF00345; chaperone protein PapD 236131..236883 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039438.1 CDS SNSL254_A0219 NC_011080.1 236902 237414 D minor fimbrial subunit 236902..237414 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039439.1 CDS SNSL254_A0220 NC_011080.1 237411 237887 D identified by match to protein family HMM PF00419; fimbrial subunit 237411..237887 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039440.1 CDS SNSL254_A0221 NC_011080.1 237887 238417 D identified by match to protein family HMM PF00419; minor fimbrial subunit StfG 237887..238417 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039441.1 CDS SNSL254_A0222 NC_011080.1 238414 239262 D hypothetical protein 238414..239262 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039442.1 CDS hemL NC_011080.1 239370 240650 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(239370..240650) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039443.1 CDS SNSL254_A0224 NC_011080.1 240820 242241 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 240820..242241 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039444.1 CDS yadR NC_011080.1 242323 242667 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 242323..242667 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039445.1 CDS SNSL254_A0226 NC_011080.1 242768 243391 R identified by match to protein family HMM PF03458; hypothetical protein complement(242768..243391) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039446.1 CDS SNSL254_A0227 NC_011080.1 243428 244216 R solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF complement(243428..244216) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039447.1 CDS mtnN NC_011080.1 244221 244919 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(244221..244919) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039448.1 CDS dgt NC_011080.1 244962 246521 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 244962..246521 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039449.1 CDS degP NC_011080.1 246642 248078 D protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 246642..248078 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039450.1 CDS SNSL254_A0231 NC_011080.1 248231 249388 D 'regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization'; carbohydrate diacid transcriptional activator CdaR 248231..249388 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039451.1 CDS SNSL254_A0232 NC_011080.1 249477 249863 R hypothetical protein complement(249477..249863) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039452.1 CDS SNSL254_A0233 NC_011080.1 250110 251411 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; shikimate transporter 250110..251411 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039453.1 CDS dapD NC_011080.1 251448 252272 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(251448..252272) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039454.1 CDS glnD NC_011080.1 252302 254974 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(252302..254974) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039455.1 CDS map NC_011080.1 255212 256006 R 'catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn'; methionine aminopeptidase complement(255212..256006) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039456.1 CDS rpsB NC_011080.1 256456 257181 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 256456..257181 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039457.1 CDS tsf NC_011080.1 257439 258290 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 257439..258290 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039458.1 CDS pyrH NC_011080.1 258435 259160 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 258435..259160 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039459.1 CDS frr NC_011080.1 259307 259864 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 259307..259864 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039460.2 CDS dxr NC_011080.1 260005 261201 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 260005..261201 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039461.1 CDS uppS NC_011080.1 261514 262272 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 261514..262272 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039462.1 CDS cdsA NC_011080.1 262285 263142 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 262285..263142 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039463.1 CDS rseP NC_011080.1 263154 264506 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 263154..264506 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039464.1 CDS yaeT NC_011080.1 264538 266970 D 'part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins'; outer membrane protein assembly factor YaeT 264538..266970 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039465.1 CDS skp NC_011080.1 267093 267578 D identified by match to protein family HMM PF03938; periplasmic chaperone 267093..267578 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039466.1 CDS lpxD NC_011080.1 267582 268607 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 267582..268607 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039467.1 CDS fabZ NC_011080.1 268713 269168 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 268713..269168 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039468.1 CDS lpxA NC_011080.1 269172 269960 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 269172..269960 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039469.1 CDS lpxB NC_011080.1 269960 271108 D 'catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM'; lipid-A-disaccharide synthase 269960..271108 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039470.1 CDS rnhB NC_011080.1 271105 271701 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 271105..271701 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039471.1 CDS dnaE NC_011080.1 271725 275207 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 271725..275207 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039472.1 CDS accA NC_011080.1 275220 276179 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 275220..276179 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039473.1 CDS SNSL254_A0255 NC_011080.1 276359 278122 D identified by match to protein family HMM PF00182; match to protein family HMM PF00801; endochitinase 276359..278122 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039474.1 CDS SNSL254_A0256 NC_011080.1 278198 280339 D identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 278198..280339 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039475.1 CDS SNSL254_A0257 NC_011080.1 280395 280784 D identified by match to protein family HMM PF00903; hypothetical protein 280395..280784 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039476.1 CDS tilS NC_011080.1 280847 282139 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 280847..282139 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039477.2 CDS rof NC_011080.1 282223 282483 R identified by match to protein family HMM PF07073; Rho-binding antiterminator complement(282223..282483) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039478.1 CDS SNSL254_A0260 NC_011080.1 282470 282670 R identified by match to protein family HMM PF06786; hypothetical protein complement(282470..282670) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039479.1 CDS SNSL254_A0261 NC_011080.1 282868 283413 D identified by match to protein family HMM PF07152; hypothetical protein 282868..283413 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039480.1 CDS SNSL254_A0262 NC_011080.1 283410 283832 D identified by match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein 283410..283832 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039481.1 CDS SNSL254_A0263 NC_011080.1 283864 284565 D identified by match to protein family HMM PF04170; copper homeostasis and adhesion lipoprotein 283864..284565 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039482.1 CDS proS NC_011080.1 284639 286357 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(284639..286357) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039483.1 CDS SNSL254_A0265 NC_011080.1 286468 287208 R identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104; hypothetical protein complement(286468..287208) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039484.1 CDS rcsF NC_011080.1 287172 287576 R outer membrane lipoprotein complement(287172..287576) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039485.1 CDS metQ NC_011080.1 287695 288510 R identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; DL-methionine transporter substrate-binding subunit complement(287695..288510) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039486.1 CDS metI NC_011080.1 288549 289202 R part of the MetNIQ methionine uptake system; DL-methionine transporter permease complement(288549..289202) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039487.1 CDS metN NC_011080.1 289195 290226 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(289195..290226) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039488.1 CDS SNSL254_A0270 NC_011080.1 290416 290982 D 'Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate'; D,D-heptose 1,7-bisphosphate phosphatase 290416..290982 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039489.1 CDS dkgB NC_011080.1 297028 297852 D 'catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid'; 2,5-diketo-D-gluconate reductase B 297028..297852 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039490.1 CDS SNSL254_A0281 NC_011080.1 297873 298787 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein complement(297873..298787) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039491.1 CDS SNSL254_A0282 NC_011080.1 298892 300067 D identified by match to protein family HMM PF07690; inner membrane transport protein YdhP 298892..300067 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039492.1 CDS SNSL254_A0283 NC_011080.1 300199 300999 D identified by match to protein family HMM PF03372; hypothetical protein 300199..300999 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039493.1 CDS SNSL254_A0284 NC_011080.1 301077 301847 D identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; UbiE/COQ5 family methyltransferase 301077..301847 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039494.2 CDS mltD NC_011080.1 301903 303270 R 'catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall'; membrane-bound lytic murein transglycosylase D complement(301903..303270) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039495.1 CDS gloB NC_011080.1 303342 304097 R catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase complement(303342..304097) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039496.1 CDS SNSL254_A0287 NC_011080.1 304132 304854 D identified by match to protein family HMM PF08241; methyltransferase 304132..304854 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039497.1 CDS rnhA NC_011080.1 304851 305318 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(304851..305318) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039498.1 CDS dnaQ NC_011080.1 305373 306113 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 305373..306113 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039499.1 CDS SNSL254_A0291 NC_011080.1 306645 307694 R identified by match to protein family HMM PF06812; ImpA-related N- family protein complement(306645..307694) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039500.1 CDS SNSL254_A0292 NC_011080.1 307711 308706 R identified by match to protein family HMM PF06996; match to protein family HMM TIGR03347; type VI secretion protein complement(307711..308706) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039501.1 CDS vasA NC_011080.1 308703 310586 R identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359; type VI secretion protein complement(308703..310586) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039502.1 CDS SNSL254_A0294 NC_011080.1 310602 311096 R identified by match to protein family HMM PF04965; match to protein family HMM TIGR03357; type VI secretion system lysozyme-like protein complement(310602..311096) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039503.1 CDS SNSL254_A0295 NC_011080.1 311093 311917 R identified by match to protein family HMM PF07024; SciE protein complement(311093..311917) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039504.1 CDS SNSL254_A0296 NC_011080.1 311904 312806 R hypothetical protein complement(311904..312806) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039505.1 CDS SNSL254_A0297 NC_011080.1 312883 313014 R identified by glimmer; hypothetical protein complement(312883..313014) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039506.1 CDS clpV NC_011080.1 313174 315813 D identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345; ClpV1 family type VI secretion ATPase 313174..315813 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039507.1 CDS SNSL254_A0299 NC_011080.1 315913 316455 D identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358; type VI secretion protein 315913..316455 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039508.1 CDS SNSL254_A0300 NC_011080.1 316479 317987 D identified by match to protein family HMM PF05943; match to protein family HMM TIGR03355; EvpB family type VI secretion protein 316479..317987 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039509.1 CDS SNSL254_A0301 NC_011080.1 318413 318838 D hypothetical protein 318413..318838 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039510.1 CDS SNSL254_A0302 NC_011080.1 319075 319560 D identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hemolysin-coregulated protein 319075..319560 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039511.1 CDS SNSL254_A0303 NC_011080.1 319863 320348 D hypothetical protein 319863..320348 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039512.1 CDS SNSL254_A0304 NC_011080.1 320384 320716 D hypothetical protein 320384..320716 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039513.1 CDS SNSL254_A0305 NC_011080.1 320859 321344 D identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hemolysin-coregulated protein 320859..321344 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039514.2 CDS SNSL254_A0306 NC_011080.1 321348 321947 D identified by match to protein family HMM TIGR03352; type VI secretion lipoprotein 321348..321947 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039515.1 CDS SNSL254_A0307 NC_011080.1 321951 323294 D identified by match to protein family HMM PF05936; match to protein family HMM TIGR03353; type VI secretion protein 321951..323294 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039516.1 CDS SNSL254_A0308 NC_011080.1 323291 324595 D identified by match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350; hypothetical protein 323291..324595 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039517.1 CDS SNSL254_A0309 NC_011080.1 324600 325373 D hypothetical protein 324600..325373 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039518.2 CDS SNSL254_A0310 NC_011080.1 325563 326006 D Shiga-like toxin A subunit 325563..326006 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039519.1 CDS icmF NC_011080.1 326040 329909 D identified by match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348; type VI secretion protein IcmF 326040..329909 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039520.1 CDS SNSL254_A0312 NC_011080.1 329909 330676 D hypothetical protein 329909..330676 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039521.1 CDS SNSL254_A0313 NC_011080.1 331279 331635 D hypothetical protein 331279..331635 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039522.1 CDS SNSL254_A0314 NC_011080.1 331644 331766 D hypothetical protein 331644..331766 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039523.1 CDS SNSL254_A0315 NC_011080.1 331793 332179 D hypothetical protein 331793..332179 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039524.1 CDS SNSL254_A0317 NC_011080.1 332602 332724 D hypothetical protein 332602..332724 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039525.1 CDS SNSL254_A0318 NC_011080.1 332866 333075 D identified by glimmer; hypothetical protein 332866..333075 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039526.1 CDS SNSL254_A0319 NC_011080.1 333121 335310 D identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361; Rhs family protein 333121..335310 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039527.1 CDS SNSL254_A0320 NC_011080.1 335334 335780 D identified by match to protein family HMM PF08786; hypothetical protein 335334..335780 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039528.1 CDS SNSL254_A0321 NC_011080.1 335799 339878 D identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643; Rhs family protein 335799..339878 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039529.1 CDS SNSL254_A0322 NC_011080.1 339872 340318 D hypothetical protein 339872..340318 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039530.1 CDS SNSL254_A0323 NC_011080.1 340704 340844 D identified by glimmer; hypothetical protein 340704..340844 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039531.1 CDS SNSL254_A0324 NC_011080.1 340837 341319 D phosphotriesterase 340837..341319 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039532.1 CDS SNSL254_A0325 NC_011080.1 341372 341647 R identified by match to protein family HMM PF08845; hypothetical protein complement(341372..341647) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039533.1 CDS SNSL254_A0326 NC_011080.1 341709 341828 D identified by glimmer; hypothetical protein 341709..341828 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039534.1 CDS SNSL254_A0327 NC_011080.1 342275 342415 D rhs core protein with extension 342275..342415 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039535.1 CDS SNSL254_A0328 NC_011080.1 343087 343554 D hypothetical protein 343087..343554 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039536.1 CDS SNSL254_A0330 NC_011080.1 344172 344330 D identified by glimmer; hypothetical protein 344172..344330 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039537.1 CDS SNSL254_A0332 NC_011080.1 344662 344802 R hypothetical protein complement(344662..344802) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039538.1 CDS SNSL254_A0334 NC_011080.1 346035 346166 D identified by glimmer; hypothetical protein 346035..346166 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039540.2 CDS SNSL254_A0336 NC_011080.1 346737 347234 D saf-pilin pilus formation protein 346737..347234 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039541.1 CDS SNSL254_A0337 NC_011080.1 347309 348049 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; periplasmic fimbrial chaperone protein 347309..348049 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039542.1 CDS SNSL254_A0338 NC_011080.1 348073 350583 D identified by match to protein family HMM PF00577; outer-membrane fimbrial usher protein 348073..350583 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039543.1 CDS SNSL254_A0339 NC_011080.1 350605 351075 D identified by match to protein family HMM PF05775; fimbrial structural subunit 350605..351075 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039544.1 CDS SNSL254_A0340 NC_011080.1 351483 352304 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 351483..352304 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039545.1 CDS SNSL254_A0341 NC_011080.1 352787 352918 D hypothetical protein 352787..352918 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039546.1 CDS SNSL254_A0342 NC_011080.1 353121 354068 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator SinR 353121..354068 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039547.1 CDS SNSL254_A0343 NC_011080.1 354188 354403 D hypothetical protein 354188..354403 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039548.1 CDS SNSL254_A0344 NC_011080.1 354407 355126 R adhesin complement(354407..355126) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039549.1 CDS SNSL254_A0345 NC_011080.1 355151 355279 R identified by glimmer; hypothetical protein complement(355151..355279) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039550.1 CDS SNSL254_A0346 NC_011080.1 355457 355864 R identified by match to protein family HMM PF07813; hypothetical protein complement(355457..355864) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039551.1 CDS SNSL254_A0347 NC_011080.1 356174 356941 R identified by match to protein family HMM PF00795; hypothetical protein complement(356174..356941) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083615.1 CDS fadE NC_011080.1 357050 359494 R acyl-coenzyme A dehydrogenase complement(357050..359494) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039552.1 CDS gmhA NC_011080.1 359734 360312 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 359734..360312 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039553.1 CDS SNSL254_A0350 NC_011080.1 360525 361292 D identified by match to protein family HMM PF00310; glutamine amidotransferase, class-II 360525..361292 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039554.1 CDS SNSL254_A0351 NC_011080.1 361263 362003 R identified by match to protein family HMM PF06104; hypothetical protein complement(361263..362003) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039555.1 CDS dinB NC_011080.1 362253 363308 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 362253..363308 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039556.1 CDS SNSL254_A0353 NC_011080.1 363527 364666 D mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein 363527..364666 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039557.1 CDS prfH NC_011080.1 364663 365277 D similar to release factor 1 and 2; peptide chain release factor-like protein 364663..365277 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039558.1 CDS pepD NC_011080.1 365433 366890 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase complement(365433..366890) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039559.1 CDS gpt NC_011080.1 367139 367597 D 'catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively'; xanthine-guanine phosphoribosyltransferase 367139..367597 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039560.1 CDS frsA NC_011080.1 367686 368930 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 367686..368930 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039561.1 CDS SNSL254_A0358 NC_011080.1 368988 369389 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 368988..369389 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039562.1 CDS SNSL254_A0360 NC_011080.1 369440 370492 R identified by match to protein family HMM PF00267; outer membrane phosphoporin protein E complement(369440..370492) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039564.1 CDS SNSL254_A0361 NC_011080.1 370558 370710 R hypothetical protein complement(370558..370710) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039565.1 CDS proB NC_011080.1 370775 371878 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 370775..371878 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039566.1 CDS proA NC_011080.1 371890 373140 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 371890..373140 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039567.1 CDS SNSL254_A0368 NC_011080.1 375295 375522 D hypothetical protein 375295..375522 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039568.2 CDS SNSL254_A0369 NC_011080.1 375764 377101 D identified by match to protein family HMM PF07690; permease 375764..377101 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039569.1 CDS leuC NC_011080.1 377233 378654 D 'dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate'; isopropylmalate isomerase large subunit 377233..378654 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039570.1 CDS leuD NC_011080.1 378656 379282 D identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171; 3-isopropylmalate dehydratase small subunit 378656..379282 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039571.1 CDS SNSL254_A0372 NC_011080.1 379297 380175 D identified by match to protein family HMM PF01557; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 379297..380175 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039572.1 CDS SNSL254_A0373 NC_011080.1 380175 381089 D identified by match to protein family HMM PF00561; haloacetate dehalogenase H-1 380175..381089 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039573.1 CDS SNSL254_A0374 NC_011080.1 381123 382088 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 381123..382088 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039574.2 CDS SNSL254_A0375 NC_011080.1 382996 383394 D fimbrial chaperone protein StbB 382996..383394 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039575.1 CDS SNSL254_A0376 NC_011080.1 383441 384199 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone protein complement(383441..384199) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039576.1 CDS SNSL254_A0377 NC_011080.1 384165 385490 R identified by match to protein family HMM PF00419; fimbrial usher complement(384165..385490) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039577.1 CDS SNSL254_A0378 NC_011080.1 385495 388056 R identified by match to protein family HMM PF00577; outer membrane fimbrial usher protein complement(385495..388056) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039578.1 CDS SNSL254_A0380 NC_011080.1 388040 388969 R identified by match to protein family HMM PF00345; fimbrial chaperone protein complement(388040..388969) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_003495230.1 CDS stbA NC_011080.1 388863 389399 R fimbrial protein major type 1 subunit complement(388863..389399) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039580.1 CDS SNSL254_A0381 NC_011080.1 390063 390797 D transmembrane regulator 390063..390797 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083616.1 CDS SNSL254_A0382 NC_011080.1 390770 391270 D hypothetical protein 390770..391270 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039581.1 CDS SNSL254_A0383 NC_011080.1 391594 393144 D identified by match to protein family HMM PF00563; hypothetical protein 391594..393144 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039582.1 CDS SNSL254_A0384 NC_011080.1 393244 393987 D identified by match to protein family HMM PF00486; response regulator 393244..393987 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039583.1 CDS SNSL254_A0385 NC_011080.1 393960 394448 D hypothetical protein 393960..394448 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039584.1 CDS SNSL254_A0386 NC_011080.1 394848 395372 D identified by match to protein family HMM PF06316; match to protein family HMM TIGR03304; attachment invasion locus protein 394848..395372 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039585.1 CDS SNSL254_A0387 NC_011080.1 395516 396157 D response regulator 395516..396157 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039586.1 CDS SNSL254_A0388 NC_011080.1 396426 396809 D cytochrome c type biogenesis protein CycH 396426..396809 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039587.1 CDS SNSL254_A0389 NC_011080.1 396879 398336 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane protein OprM complement(396879..398336) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039588.1 CDS SNSL254_A0390 NC_011080.1 398353 401520 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; hypothetical protein complement(398353..401520) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039589.1 CDS SNSL254_A0391 NC_011080.1 401517 402743 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; auxiliary transport protein membrane fusion protein (MFP) family complement(401517..402743) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039590.1 CDS SNSL254_A0392 NC_011080.1 403020 405308 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 403020..405308 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039591.1 CDS cueR NC_011080.1 405320 405784 D identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02044; Cu(I)-responsive transcriptional regulator 405320..405784 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039592.1 CDS SNSL254_A0394 NC_011080.1 405862 406056 D hypothetical protein 405862..406056 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039594.1 CDS SNSL254_A0396 NC_011080.1 406348 407601 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 406348..407601 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039595.1 CDS SNSL254_A0397 NC_011080.1 407790 409748 D identified by match to protein family HMM PF01555; type III restriction-modification system StyLTI enzyme mod 407790..409748 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039596.1 CDS SNSL254_A0398 NC_011080.1 409761 412730 D identified by match to protein family HMM PF04851; match to protein family HMM PF08774; type III restriction-modification system StyLTI enzyme res 409761..412730 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039597.1 CDS SNSL254_A0399 NC_011080.1 412884 413003 R identified by glimmer; hypothetical protein complement(412884..413003) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039598.1 CDS SNSL254_A0400 NC_011080.1 413225 414628 D identified by match to protein family HMM PF01654; cytochrome bd-II oxidase subunit 1 413225..414628 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039599.1 CDS cydB NC_011080.1 414625 415635 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 414625..415635 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039600.1 CDS SNSL254_A0402 NC_011080.1 415635 415766 D hypothetical protein 415635..415766 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039601.1 CDS SNSL254_A0403 NC_011080.1 415972 416976 D identified by match to protein family HMM PF00165; araC family transcriptional regulator 415972..416976 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039602.1 CDS SNSL254_A0404 NC_011080.1 417140 419230 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferrichrome-iron receptor 417140..419230 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039603.1 CDS SNSL254_A0405 NC_011080.1 419269 419901 R identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; transporter complement(419269..419901) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039604.1 CDS SNSL254_A0406 NC_011080.1 420133 420408 D identified by match to protein family HMM PF07338; hypothetical protein 420133..420408 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039605.1 CDS prpR NC_011080.1 420544 422169 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR02329; propionate catabolism operon regulatory protein PrpR complement(420544..422169) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039606.1 CDS prpB NC_011080.1 422435 423322 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 422435..423322 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039607.1 CDS prpC NC_011080.1 423445 424614 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 423445..424614 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039608.1 CDS prpD NC_011080.1 424654 426105 D 'functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C'; 2-methylcitrate dehydratase 424654..426105 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039609.1 CDS prpE NC_011080.1 426146 428032 D 'catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent'; propionyl-CoA synthetase 426146..428032 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039610.1 CDS hemB NC_011080.1 428136 429110 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(428136..429110) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039611.1 CDS SNSL254_A0413 NC_011080.1 429330 429449 D identified by glimmer; hypothetical protein 429330..429449 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039612.1 CDS SNSL254_A0414 NC_011080.1 429440 429592 R identified by glimmer; hypothetical protein complement(429440..429592) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039613.2 CDS SNSL254_A0415 NC_011080.1 429623 432508 D identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414; flagellar protein 429623..432508 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083617.1 CDS SNSL254_A0416 NC_011080.1 432594 433217 D hypothetical protein 432594..433217 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039614.1 CDS SNSL254_A0417 NC_011080.1 433262 434419 R this protein has no known enzymatic function; beta-lactam binding protein AmpH complement(433262..434419) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039615.1 CDS smbA NC_011080.1 434766 435986 D 'in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope'; transporter 434766..435986 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039616.1 CDS SNSL254_A0419 NC_011080.1 436001 437095 D identified by match to protein family HMM PF07759; hypothetical protein 436001..437095 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039617.1 CDS SNSL254_A0420 NC_011080.1 437133 437441 R hypothetical protein complement(437133..437441) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039618.1 CDS SNSL254_A0421 NC_011080.1 437709 437924 D hypothetical protein 437709..437924 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039619.1 CDS ddl NC_011080.1 437950 439044 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(437950..439044) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039620.1 CDS SNSL254_A0423 NC_011080.1 439152 439835 D identified by match to protein family HMM PF06904; extensin family protein 439152..439835 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039621.1 CDS SNSL254_A0424 NC_011080.1 440004 441215 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 440004..441215 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039622.1 CDS SNSL254_A0425 NC_011080.1 441512 441772 D hypothetical protein 441512..441772 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039623.1 CDS SNSL254_A0426 NC_011080.1 442121 442441 D identified by match to protein family HMM PF07769; hypothetical protein 442121..442441 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039624.1 CDS adrA NC_011080.1 442533 443645 D 'catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis'; diguanylate cyclase AdrA 442533..443645 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039625.1 CDS proC NC_011080.1 443660 444469 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(443660..444469) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039626.1 CDS SNSL254_A0429 NC_011080.1 444503 444652 D identified by glimmer; hypothetical protein 444503..444652 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039627.1 CDS SNSL254_A0430 NC_011080.1 444609 445064 D identified by match to protein family HMM PF02639; hypothetical protein 444609..445064 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039628.1 CDS aroL NC_011080.1 445249 445794 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 445249..445794 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039629.1 CDS SNSL254_A0432 NC_011080.1 445821 446012 D hypothetical protein 445821..446012 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039630.1 CDS SNSL254_A0433 NC_011080.1 446263 446940 D identified by match to protein family HMM PF07302; hypothetical protein 446263..446940 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039631.1 CDS SNSL254_A0434 NC_011080.1 447011 447295 D identified by match to protein family HMM PF06865; hypothetical protein 447011..447295 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039632.1 CDS rdgC NC_011080.1 447333 448244 R Required for efficient pilin antigenic variation; recombination associated protein complement(447333..448244) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039633.1 CDS SNSL254_A0436 NC_011080.1 448370 449278 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 448370..449278 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039634.1 CDS SNSL254_A0437 NC_011080.1 449298 450470 R member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ complement(449298..450470) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039635.1 CDS SNSL254_A0438 NC_011080.1 450643 453783 R with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease SbcC complement(450643..453783) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039636.1 CDS SNSL254_A0439 NC_011080.1 453780 454982 R 'with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity'; exonuclease SbcD complement(453780..454982) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039637.1 CDS phoB NC_011080.1 455197 455886 D two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 455197..455886 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039638.1 CDS phoR NC_011080.1 455956 457251 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 455956..457251 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039639.1 CDS SNSL254_A0443 NC_011080.1 457464 457613 R hypothetical protein complement(457464..457613) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039640.1 CDS brnQ NC_011080.1 457660 458979 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 457660..458979 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039641.1 CDS proY NC_011080.1 458994 460424 D 'cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation'; proline-specific permease 458994..460424 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039642.1 CDS SNSL254_A0446 NC_011080.1 460586 462403 D identified by match to protein family HMM PF00128; maltodextrin glucosidase 460586..462403 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039643.1 CDS SNSL254_A0447 NC_011080.1 462475 463077 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; peroxiredoxin-2 complement(462475..463077) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039644.1 CDS acpH NC_011080.1 463288 463869 R Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; ACP phosphodieterase complement(463288..463869) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039645.1 CDS queA NC_011080.1 463963 465027 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 463963..465027 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039646.1 CDS SNSL254_A0450 NC_011080.1 465014 465160 D DNA metabolism protein 465014..465160 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039647.1 CDS tgt NC_011080.1 465224 466351 D 'Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)'; queuine tRNA-ribosyltransferase 465224..466351 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039648.1 CDS yajC NC_011080.1 466374 466706 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 466374..466706 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039649.1 CDS secD NC_011080.1 466734 468581 D 'part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane'; preprotein translocase subunit SecD 466734..468581 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039650.1 CDS secF NC_011080.1 468592 469563 D 'forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF'; preprotein translocase subunit SecF 468592..469563 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039651.1 CDS SNSL254_A0455 NC_011080.1 469712 470077 D identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase 469712..470077 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039652.1 CDS SNSL254_A0456 NC_011080.1 470103 470795 D identified by match to protein family HMM PF08279; type 11 helix-turn-helix protein 470103..470795 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039653.1 CDS SNSL254_A0457 NC_011080.1 470965 471312 D identified by match to protein family HMM PF01844; hypothetical protein 470965..471312 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039654.1 CDS SNSL254_A0459 NC_011080.1 471941 472804 R identified by match to protein family HMM PF03502; nucleoside-specific channel-forming protein tsx complement(471941..472804) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039655.1 CDS SNSL254_A0460 NC_011080.1 473104 473601 R hypothetical protein complement(473104..473601) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039656.1 CDS SNSL254_A0461 NC_011080.1 473676 473822 D identified by glimmer; hypothetical protein 473676..473822 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039657.1 CDS nrdR NC_011080.1 473795 474244 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 473795..474244 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039658.1 CDS ribD NC_011080.1 474248 475351 D 'riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil'; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 474248..475351 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039659.1 CDS ribH NC_011080.1 475440 475910 D 'RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not'; 6,7-dimethyl-8-ribityllumazine synthase 475440..475910 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039660.1 CDS nusB NC_011080.1 475931 476350 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 475931..476350 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039661.1 CDS thiL NC_011080.1 476429 477409 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 476429..477409 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039662.1 CDS pgpA NC_011080.1 477396 477902 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 477396..477902 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039663.1 CDS SNSL254_A0468 NC_011080.1 478006 478980 R identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family complement(478006..478980) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039664.1 CDS dxs NC_011080.1 479037 480899 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(479037..480899) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039665.1 CDS ispA NC_011080.1 480923 481822 R identified by match to protein family HMM PF00348; geranyltranstransferase complement(480923..481822) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039666.1 CDS xseB NC_011080.1 481823 482065 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(481823..482065) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039667.1 CDS thiI NC_011080.1 482275 483723 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 482275..483723 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039668.1 CDS phnV NC_011080.1 483767 484564 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR03255; 2-aminoethylphosphonate ABC transport system membrane component PhnV complement(483767..484564) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039669.1 CDS phnU NC_011080.1 484558 485427 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR03226; 2-aminoethylphosphonate ABC transporter permease complement(484558..485427) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039670.1 CDS phnT NC_011080.1 485430 486539 R identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR03258; 2-aminoethylphosphonate ABC transporter ATP-binding protein complement(485430..486539) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039671.1 CDS phnS NC_011080.1 486545 487558 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR03227; 2-aminoethylphosphonate ABC transporter substrate-binding protein complement(486545..487558) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039672.1 CDS SNSL254_A0477 NC_011080.1 487756 488475 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR03337; transcriptional regulator complement(487756..488475) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039673.1 CDS phnW NC_011080.1 488615 489718 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 488615..489718 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039674.1 CDS phnX NC_011080.1 489728 490537 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 489728..490537 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039675.1 CDS SNSL254_A0480 NC_011080.1 490634 491224 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 family protein complement(490634..491224) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039676.1 CDS panE NC_011080.1 491187 492098 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(491187..492098) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039677.1 CDS SNSL254_A0482 NC_011080.1 492224 492715 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 492224..492715 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039678.1 CDS SNSL254_A0483 NC_011080.1 492762 494126 R identified by match to protein family HMM PF07690; inner membrane transport protein YajR complement(492762..494126) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039679.1 CDS SNSL254_A0484 NC_011080.1 494651 496162 D identified by match to protein family HMM PF08238; hypothetical protein 494651..496162 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039680.1 CDS SNSL254_A0485 NC_011080.1 496174 497667 D identified by match to protein family HMM PF08238; hypothetical protein 496174..497667 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039681.1 CDS cyoE NC_011080.1 497749 498636 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(497749..498636) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039682.1 CDS cyoD NC_011080.1 498651 498980 R identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847; cytochrome o ubiquinol oxidase subunit IV complement(498651..498980) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039683.1 CDS cyoC NC_011080.1 498980 499594 R identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842; cytochrome o ubiquinol oxidase subunit III complement(498980..499594) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039684.1 CDS cyoB NC_011080.1 499584 501575 R identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843; cytochrome o ubiquinol oxidase subunit I complement(499584..501575) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039685.1 CDS cyoA NC_011080.1 501586 502542 R identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433; cytochrome o ubiquinol oxidase subunit II complement(501586..502542) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039686.1 CDS SNSL254_A0491 NC_011080.1 502789 502911 R identified by glimmer; hypothetical protein complement(502789..502911) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039687.1 CDS ampG NC_011080.1 502995 504476 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter complement(502995..504476) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083618.1 CDS SNSL254_A0493 NC_011080.1 504514 505146 R hypothetical protein complement(504514..505146) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039688.1 CDS SNSL254_A0494 NC_011080.1 505154 505273 R identified by glimmer; hypothetical protein complement(505154..505273) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039689.1 CDS SNSL254_A0495 NC_011080.1 505396 505713 D 'positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress'; transcriptional regulator BolA 505396..505713 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039690.1 CDS tig NC_011080.1 506060 507358 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 506060..507358 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039691.1 CDS clpP NC_011080.1 507605 508228 D 'hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates'; ATP-dependent Clp protease proteolytic subunit 507605..508228 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039692.1 CDS clpX NC_011080.1 508480 509751 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 508480..509751 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039693.1 CDS lon NC_011080.1 509937 512291 D identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; DNA-binding ATP-dependent protease La 509937..512291 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039694.1 CDS hupB NC_011080.1 512500 512772 D histone-like DNA-binding protein; transcriptional regulator HU subunit beta 512500..512772 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039695.1 CDS ppiD NC_011080.1 513063 514934 D identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase 513063..514934 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039696.1 CDS SNSL254_A0502 NC_011080.1 515084 515458 D identified by match to protein family HMM TIGR00426; competence protein ComEA 515084..515458 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039697.1 CDS SNSL254_A0503 NC_011080.1 515562 515960 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase superfamily protein 515562..515960 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039698.1 CDS SNSL254_A0504 NC_011080.1 516066 516761 R 'YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His'; queuosine biosynthesis protein QueC complement(516066..516761) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039699.1 CDS SNSL254_A0505 NC_011080.1 516826 518526 R identified by match to protein family HMM PF00496; family 5 extracellular solute-binding protein complement(516826..518526) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039700.1 CDS SNSL254_A0506 NC_011080.1 518627 519445 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein 518627..519445 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039701.1 CDS SNSL254_A0507 NC_011080.1 519495 520547 R identified by match to protein family HMM PF00291; pyridoxal-5'-phosphate-dependent protein subunit beta complement(519495..520547) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039702.1 CDS SNSL254_A0508 NC_011080.1 520663 521121 D identified by match to protein family HMM PF01037; glutamate uptake regulatory protein 520663..521121 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039703.1 CDS SNSL254_A0509 NC_011080.1 521162 522934 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding components 521162..522934 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039704.1 CDS SNSL254_A0510 NC_011080.1 522927 524708 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding components 522927..524708 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039705.1 CDS SNSL254_A0511 NC_011080.1 524742 524870 D hypothetical protein 524742..524870 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039706.1 CDS SNSL254_A0512 NC_011080.1 524921 525259 D 'indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.'; nitrogen regulatory protein P-II 2 524921..525259 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039707.1 CDS amt NC_011080.1 525291 526577 D identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 525291..526577 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039708.1 CDS tesB NC_011080.1 526677 527537 R identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189; acyl-CoA thioesterase complement(526677..527537) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039709.1 CDS SNSL254_A0515 NC_011080.1 527752 528321 D lipoprotein 527752..528321 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039710.1 CDS SNSL254_A0516 NC_011080.1 528354 528743 R identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase complement(528354..528743) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039711.1 CDS SNSL254_A0518 NC_011080.1 528974 530524 R identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein complement(528974..530524) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039712.1 CDS rpmE2 NC_011080.1 530749 531009 D 'RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome'; 50S ribosomal protein L31 530749..531009 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039713.1 CDS rpmJ NC_011080.1 531015 531155 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 531015..531155 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039714.1 CDS SNSL254_A0521 NC_011080.1 531211 531681 R hypothetical protein complement(531211..531681) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039715.1 CDS SNSL254_A0522 NC_011080.1 531798 532349 R identified by match to protein family HMM PF00132; maltose O-acetyltransferase complement(531798..532349) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039716.1 CDS SNSL254_A0523 NC_011080.1 532528 532746 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein complement(532528..532746) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039717.1 CDS SNSL254_A0524 NC_011080.1 532774 533148 R hypothetical protein complement(532774..533148) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039718.1 CDS SNSL254_A0525 NC_011080.1 533644 536793 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; acriflavine resistance protein B complement(533644..536793) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039719.1 CDS acrA NC_011080.1 536816 538009 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein A complement(536816..538009) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039720.1 CDS acrR NC_011080.1 538151 538804 D regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 538151..538804 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039721.1 CDS SNSL254_A0528 NC_011080.1 538923 542285 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 538923..542285 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039722.1 CDS SNSL254_A0529 NC_011080.1 542327 543262 R identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein complement(542327..543262) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039723.1 CDS SNSL254_A0530 NC_011080.1 543332 543499 R hypothetical protein complement(543332..543499) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039724.1 CDS SNSL254_A0531 NC_011080.1 543513 544028 R 'PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks'; primosomal replication protein N'' complement(543513..544028) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039725.1 CDS SNSL254_A0532 NC_011080.1 544109 544486 D identified by match to protein family HMM PF04304; hypothetical protein 544109..544486 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039726.1 CDS apt NC_011080.1 544639 545190 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 544639..545190 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039727.1 CDS dnaX NC_011080.1 545304 547232 D 'catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA'; DNA polymerase III subunits gamma and tau 545304..547232 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039728.1 CDS SNSL254_A0536 NC_011080.1 547278 547607 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 547278..547607 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039729.1 CDS recR NC_011080.1 547607 548212 D 'involved in a recombinational process of DNA repair, independent of the recBC complex'; recombination protein RecR 547607..548212 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039730.1 CDS htpG NC_011080.1 548323 550197 D molecular chaperone; heat shock protein 90 548323..550197 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039731.1 CDS adk NC_011080.1 550438 551082 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 550438..551082 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039732.1 CDS SNSL254_A0540 NC_011080.1 551161 551301 D hypothetical protein 551161..551301 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039733.1 CDS hemH NC_011080.1 551311 552273 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 551311..552273 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039734.1 CDS SNSL254_A0542 NC_011080.1 552270 553241 R identified by match to protein family HMM PF07859; acetyl esterase complement(552270..553241) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039735.1 CDS gsk NC_011080.1 553394 554698 D identified by match to protein family HMM PF00294; inosine kinase 553394..554698 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039736.1 CDS SNSL254_A0544 NC_011080.1 554747 556423 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; cation:proton antiport protein complement(554747..556423) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039737.1 CDS SNSL254_A0545 NC_011080.1 556501 556626 D identified by glimmer; hypothetical protein 556501..556626 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039738.1 CDS fsr NC_011080.1 556638 557858 R identified by match to protein family HMM PF07690; fosmidomycin resistance protein complement(556638..557858) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039739.1 CDS ushA NC_011080.1 558031 559683 D 'catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides'; bifunctional UDP-sugar hydrolase/5'-nucleotidase 558031..559683 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039740.1 CDS ybaK NC_011080.1 559800 560279 R identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; hypothetical protein complement(559800..560279) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039741.1 CDS SNSL254_A0550 NC_011080.1 560481 561275 R identified by match to protein family HMM PF07446; GumN family protein complement(560481..561275) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039742.1 CDS SNSL254_A0551 NC_011080.1 561361 562188 R hypothetical protein complement(561361..562188) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039743.1 CDS copA NC_011080.1 562342 564843 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper exporting ATPase complement(562342..564843) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039744.1 CDS cueR NC_011080.1 564953 565369 D activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 564953..565369 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039745.1 CDS SNSL254_A0554 NC_011080.1 565370 565822 R identified by match to protein family HMM PF01957; hypothetical protein complement(565370..565822) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039746.1 CDS SNSL254_A0555 NC_011080.1 565819 566736 R identified by match to protein family HMM PF01145; hypothetical protein complement(565819..566736) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039747.1 CDS SNSL254_A0556 NC_011080.1 566883 567560 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 566883..567560 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039748.1 CDS SNSL254_A0557 NC_011080.1 567547 568326 D identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 567547..568326 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039749.1 CDS SNSL254_A0558 NC_011080.1 568412 569293 R identified by match to protein family HMM PF00085; thioredoxin domain-containing protein complement(568412..569293) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039750.1 CDS SNSL254_A0559 NC_011080.1 569326 570096 R identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase complement(569326..570096) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039751.1 CDS SNSL254_A0561 NC_011080.1 570251 570865 R identified by match to protein family HMM PF00657; multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 complement(570251..570865) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039752.1 CDS SNSL254_A0560 NC_011080.1 570836 571522 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 570836..571522 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039753.1 CDS SNSL254_A0562 NC_011080.1 571519 573933 D identified by match to protein family HMM PF02687; efflux ABC transporter permease protein 571519..573933 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039754.1 CDS SNSL254_A0563 NC_011080.1 574118 575251 D outer membrane protein 574118..575251 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039755.1 CDS SNSL254_A0564 NC_011080.1 575508 576338 D identified by match to protein family HMM PF03180; lipoprotein 575508..576338 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039756.1 CDS SNSL254_A0565 NC_011080.1 576375 577391 D identified by match to protein family HMM PF00005; match to protein family HMM PF09383; methionine import ATP-binding protein MetN 2 576375..577391 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039757.1 CDS SNSL254_A0566 NC_011080.1 577384 578043 D identified by match to protein family HMM PF00528; ABC transporter 577384..578043 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039758.1 CDS ybbB NC_011080.1 578082 579176 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(578082..579176) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039759.1 CDS SNSL254_A0568 NC_011080.1 579246 580172 R activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS complement(579246..580172) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039760.1 CDS allA NC_011080.1 580399 580881 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 580399..580881 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039761.1 CDS SNSL254_A0570 NC_011080.1 580960 581778 D regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 580960..581778 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039762.1 CDS gcl NC_011080.1 581863 583644 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 581863..583644 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039763.1 CDS hyi NC_011080.1 583657 584433 D identified by match to protein family HMM PF01261; match to protein family HMM TIGR03234; hydroxypyruvate isomerase 583657..584433 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039764.1 CDS SNSL254_A0573 NC_011080.1 584534 585412 D identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505; 2-hydroxy-3-oxopropionate reductase 584534..585412 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039765.1 CDS SNSL254_A0574 NC_011080.1 585478 586725 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter protein 585478..586725 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039766.1 CDS ncs1 NC_011080.1 586821 588275 D identified by match to protein family HMM PF02133; match to protein family HMM TIGR00800; allantoin permease 586821..588275 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039767.1 CDS allB NC_011080.1 588354 589715 D Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 588354..589715 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039768.1 CDS SNSL254_A0577 NC_011080.1 589774 591072 D identified by match to protein family HMM PF00860; purine permease YbbY 589774..591072 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039769.1 CDS SNSL254_A0578 NC_011080.1 591095 592243 D identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 591095..592243 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039770.1 CDS SNSL254_A0579 NC_011080.1 592323 593108 R identified by match to protein family HMM PF05899; match to protein family HMM PF07883; match to protein family HMM TIGR03214; hypothetical protein complement(592323..593108) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039771.1 CDS allC NC_011080.1 593119 594354 R 'allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide'; allantoate amidohydrolase complement(593119..594354) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039772.1 CDS allD NC_011080.1 594376 595425 R identified by match to protein family HMM PF02615; match to protein family HMM TIGR03175; ureidoglycolate dehydrogenase complement(594376..595425) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039773.1 CDS SNSL254_A0582 NC_011080.1 595741 597405 D multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 595741..597405 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039774.1 CDS SNSL254_A0583 NC_011080.1 597415 598674 D identified by match to protein family HMM PF06545; hypothetical protein 597415..598674 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039775.1 CDS SNSL254_A0584 NC_011080.1 598686 599495 D hypothetical protein 598686..599495 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039776.1 CDS arcC NC_011080.1 599499 600392 D identified by match to protein family HMM PF00696; match to protein family HMM TIGR00746; carbamate kinase 599499..600392 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039777.1 CDS purK NC_011080.1 600433 601500 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(600433..601500) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039778.1 CDS purE NC_011080.1 601497 602006 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(601497..602006) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039779.1 CDS lpxH NC_011080.1 602124 602846 R 'catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine'; UDP-2,3-diacylglucosamine hydrolase complement(602124..602846) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039780.1 CDS ppiB NC_011080.1 602849 603343 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B complement(602849..603343) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039781.1 CDS cysS NC_011080.1 603516 604901 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 603516..604901 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039782.1 CDS SNSL254_A0591 NC_011080.1 604945 605769 R hypothetical protein complement(604945..605769) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039783.1 CDS SNSL254_A0592 NC_011080.1 605766 606203 R hypothetical protein complement(605766..606203) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039784.1 CDS SNSL254_A0593 NC_011080.1 606196 606741 R identified by match to protein family HMM PF04307; hypothetical protein complement(606196..606741) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039785.1 CDS SNSL254_A0594 NC_011080.1 606868 607080 R hypothetical protein complement(606868..607080) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039786.1 CDS folD NC_011080.1 607082 607948 R 'catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate'; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(607082..607948) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039787.1 CDS SNSL254_A0596 NC_011080.1 608495 609052 D identified by match to protein family HMM PF00419; type-1 fimbrial protein subunit A 608495..609052 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039788.1 CDS SNSL254_A0597 NC_011080.1 609167 609661 D identified by match to protein family HMM PF00419; fimbrial protein 609167..609661 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039789.1 CDS SNSL254_A0598 NC_011080.1 609705 610397 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 609705..610397 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039790.1 CDS SNSL254_A0599 NC_011080.1 610428 613040 D identified by match to protein family HMM PF00577; fimbrial usher protein 610428..613040 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039791.1 CDS SNSL254_A0600 NC_011080.1 613055 614062 D mannose binding protein FimH 613055..614062 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039792.1 CDS SNSL254_A0601 NC_011080.1 614072 614590 D identified by match to protein family HMM PF00419; fimbrial protein 614072..614590 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039793.1 CDS SNSL254_A0602 NC_011080.1 614636 615268 R activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ complement(614636..615268) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039794.1 CDS SNSL254_A0603 NC_011080.1 615872 616594 R fimbriae Y protein complement(615872..616594) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039795.2 CDS SNSL254_A0604 NC_011080.1 616613 616924 R hypothetical protein complement(616613..616924) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039796.1 CDS SNSL254_A0605 NC_011080.1 617086 617682 R fimbriae W protein complement(617086..617682) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039797.1 CDS SNSL254_A0607 NC_011080.1 619044 620855 R hypothetical protein complement(619044..620855) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039798.1 CDS SNSL254_A0608 NC_011080.1 620852 621772 R identified by match to protein family HMM PF00535; glycosyl transferase complement(620852..621772) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039799.1 CDS SNSL254_A0609 NC_011080.1 621769 622131 R identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase complement(621769..622131) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039800.1 CDS SNSL254_A0611 NC_011080.1 622863 622985 R identified by glimmer; hypothetical protein complement(622863..622985) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039801.1 CDS SNSL254_A0613 NC_011080.1 623427 623684 D cation efflux system protein CusA 623427..623684 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039802.1 CDS SNSL254_A0614 NC_011080.1 623665 624519 R identified by match to protein family HMM PF00165; araC family transcriptional regulator complement(623665..624519) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039803.1 CDS SNSL254_A0615 NC_011080.1 624735 626060 D Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 624735..626060 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039804.1 CDS SNSL254_A0617 NC_011080.1 626111 626233 R identified by glimmer; hypothetical protein complement(626111..626233) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039805.1 CDS SNSL254_A0616 NC_011080.1 626217 626453 D identified by match to protein family HMM PF07338; hypothetical protein 626217..626453 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039806.1 CDS SNSL254_A0618 NC_011080.1 626466 627026 D identified by match to protein family HMM PF04224; hypothetical protein 626466..627026 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039807.1 CDS SNSL254_A0619 NC_011080.1 627105 628280 R molecular chaperone DnaJ complement(627105..628280) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039808.1 CDS SNSL254_A0620 NC_011080.1 628606 630000 D identified by match to protein family HMM PF00324; phenylalanine transporter 628606..630000 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039809.1 CDS SNSL254_A0621 NC_011080.1 630042 631289 R identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel transporter complement(630042..631289) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039810.1 CDS SNSL254_A0622 NC_011080.1 631319 631501 D hypothetical protein 631319..631501 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039811.1 CDS SNSL254_A0623 NC_011080.1 631600 633570 D identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414; lipase 1 631600..633570 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039812.1 CDS SNSL254_A0624 NC_011080.1 633737 636466 D identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF07728; ATPase AAA 633737..636466 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039813.1 CDS SNSL254_A0625 NC_011080.1 636594 637580 R identified by match to protein family HMM PF01380; sugar isomerase complement(636594..637580) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039814.1 CDS SNSL254_A0626 NC_011080.1 637647 638708 R identified by match to protein family HMM PF01380; sugar isomerase complement(637647..638708) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039815.1 CDS SNSL254_A0627 NC_011080.1 638723 639577 R identified by match to protein family HMM PF03613; PTS system mannose-specific transporter subunit IID complement(638723..639577) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039816.1 CDS SNSL254_A0628 NC_011080.1 639580 640323 R identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC complement(639580..640323) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039817.1 CDS SNSL254_A0629 NC_011080.1 640338 640808 R identified by match to protein family HMM PF03830; PTS system sorbose-specific transporter subunit IIB complement(640338..640808) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039818.1 CDS SNSL254_A0630 NC_011080.1 640786 641235 R identified by match to protein family HMM PF03610; PTS system mannose-specific transporter subunit IIAB complement(640786..641235) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039819.1 CDS SNSL254_A0631 NC_011080.1 641435 642088 R 'catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive'; dihydropteridine reductase complement(641435..642088) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039820.1 CDS SNSL254_A0632 NC_011080.1 642185 642553 R identified by match to protein family HMM PF04237; hypothetical protein complement(642185..642553) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039821.1 CDS SNSL254_A0633 NC_011080.1 642553 643134 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(642553..643134) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039822.1 CDS SNSL254_A0634 NC_011080.1 643423 643764 D identified by match to protein family HMM PF00165; transposon Tn10 TetD protein 643423..643764 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039823.1 CDS SNSL254_A0635 NC_011080.1 643770 643994 R hypothetical protein complement(643770..643994) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039824.1 CDS SNSL254_A0636 NC_011080.1 644085 645203 R ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase complement(644085..645203) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039825.1 CDS SNSL254_A0637 NC_011080.1 645215 645919 R identified by match to protein family HMM PF01648; enterobactin synthase multienzyme complex phosphopantetheinyltransferase complement(645215..645919) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039826.1 CDS SNSL254_A0638 NC_011080.1 645966 648221 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(645966..648221) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039827.1 CDS SNSL254_A0639 NC_011080.1 648410 649624 D identified by match to protein family HMM PF00756; enterobactin/ferric enterobactin esterase 648410..649624 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039828.1 CDS SNSL254_A0640 NC_011080.1 649655 649873 D identified by match to protein family HMM PF03621; hypothetical protein 649655..649873 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039829.1 CDS entF NC_011080.1 649870 653754 D 'with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin'; enterobactin synthase subunit F 649870..653754 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039830.1 CDS SNSL254_A0642 NC_011080.1 654004 655140 D part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 654004..655140 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039831.1 CDS SNSL254_A0643 NC_011080.1 655193 655987 R with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein complement(655193..655987) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039832.1 CDS SNSL254_A0644 NC_011080.1 655984 656973 R with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease complement(655984..656973) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039833.1 CDS SNSL254_A0645 NC_011080.1 656973 657980 R with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein complement(656973..657980) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039834.1 CDS SNSL254_A0646 NC_011080.1 658091 659335 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 658091..659335 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039835.1 CDS SNSL254_A0647 NC_011080.1 659398 660354 R with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein complement(659398..660354) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039836.1 CDS SNSL254_A0648 NC_011080.1 660663 661838 D identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase EntC 660663..661838 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039837.1 CDS entE NC_011080.1 661848 663458 D 'bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate'; enterobactin synthase subunit E 661848..663458 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039838.1 CDS entB NC_011080.1 663472 664329 D identified by match to protein family HMM PF00550; match to protein family HMM PF00857; isochorismatase 663472..664329 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039839.1 CDS entA NC_011080.1 664329 665084 D 'catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin'; 2,3-dihydroxybenzoate-2,3-dehydrogenase 664329..665084 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039840.1 CDS SNSL254_A0652 NC_011080.1 665087 665500 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 665087..665500 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039841.1 CDS cstA NC_011080.1 665682 667787 D identified by match to protein family HMM PF02554; carbon starvation protein A 665682..667787 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039842.1 CDS SNSL254_A0654 NC_011080.1 667851 668048 D identified by match to protein family HMM PF04328; hypothetical protein 667851..668048 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039843.1 CDS SNSL254_A0655 NC_011080.1 668084 669172 R member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein complement(668084..669172) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039844.1 CDS SNSL254_A0656 NC_011080.1 669290 670459 D catalyzes the transfer of an amino moiety; aminotransferase 669290..670459 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039845.1 CDS SNSL254_A0657 NC_011080.1 670460 671077 R identified by match to protein family HMM PF02195; IbrB protein complement(670460..671077) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039846.1 CDS SNSL254_A0658 NC_011080.1 671050 672285 R identified by match to protein family HMM PF01507; IbrA protein complement(671050..672285) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039847.1 CDS SNSL254_A0659 NC_011080.1 672451 673311 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(672451..673311) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039848.2 CDS dsbG NC_011080.1 673670 674416 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(673670..674416) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039849.1 CDS ahpC NC_011080.1 674857 675420 D with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase 674857..675420 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_007419096.1 CDS ahpF NC_011080.1 675662 677227 D alkyl hydroperoxide reductase subunit F 675662..677227 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039850.1 CDS SNSL254_A0663 NC_011080.1 677560 678120 D identified by match to protein family HMM PF06192; anaerobic dehydrogenase subunit 677560..678120 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039851.1 CDS SNSL254_A0664 NC_011080.1 678113 680392 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; molybdopterin-containing oxidoreductase catalytic subunit 678113..680392 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039852.1 CDS SNSL254_A0665 NC_011080.1 680389 680946 D identified by match to protein family HMM PF00037; molybdopterin-containing oxidoreductase iron-sulfur subunit 680389..680946 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039853.1 CDS SNSL254_A0666 NC_011080.1 680946 681713 D molybdopterin-containing oxidoreductase membrane anchor subunit 680946..681713 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039854.2 CDS SNSL254_A0667 NC_011080.1 681781 682209 R universal stress protein G complement(681781..682209) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039855.1 CDS SNSL254_A0669 NC_011080.1 682432 683670 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; molecular chaperone GroES 682432..683670 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039856.1 CDS SNSL254_A0670 NC_011080.1 683753 684163 R 'Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation'; nucleoside diphosphate kinase regulator complement(683753..684163) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039857.1 CDS SNSL254_A0671 NC_011080.1 684398 685204 R ribonuclease I complement(684398..685204) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039858.1 CDS SNSL254_A0672 NC_011080.1 685314 686777 R identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; sodium:sulfate symporter family protein complement(685314..686777) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039859.1 CDS citG NC_011080.1 686815 687711 R catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase complement(686815..687711) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039860.1 CDS citX NC_011080.1 687683 688234 R 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase complement(687683..688234) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039861.1 CDS citF NC_011080.1 688238 689767 R identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha complement(688238..689767) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039862.1 CDS citE NC_011080.1 689777 690685 R identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta complement(689777..690685) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039863.1 CDS citD NC_011080.1 690682 690978 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(690682..690978) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039864.1 CDS citC NC_011080.1 690975 692051 R identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase complement(690975..692051) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039865.1 CDS SNSL254_A0679 NC_011080.1 692262 692426 D hypothetical protein 692262..692426 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039866.1 CDS SNSL254_A0680 NC_011080.1 692436 694097 D identified by match to protein family HMM PF02518; sensor kinase DpiB 692436..694097 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039867.1 CDS dpiA NC_011080.1 694066 694746 D regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 694066..694746 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039868.1 CDS dcuC NC_011080.1 694800 696230 R responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC complement(694800..696230) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039869.1 CDS pagP NC_011080.1 696576 697136 D catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 696576..697136 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039870.1 CDS cspE NC_011080.1 697324 697533 D member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 697324..697533 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039871.1 CDS crcB NC_011080.1 697591 697974 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(697591..697974) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039872.1 CDS SNSL254_A0686 NC_011080.1 698065 698853 D identified by match to protein family HMM PF00795; hydrolase YbeM 698065..698853 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039873.1 CDS tatE NC_011080.1 698982 699185 D TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein E 698982..699185 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039874.1 CDS lipA NC_011080.1 699271 700236 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(699271..700236) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039875.1 CDS SNSL254_A0689 NC_011080.1 700277 700411 R identified by glimmer; hypothetical protein complement(700277..700411) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039876.1 CDS SNSL254_A0690 NC_011080.1 700442 701395 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator complement(700442..701395) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039877.1 CDS lipB NC_011080.1 701697 702338 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(701697..702338) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039878.1 CDS SNSL254_A0692 NC_011080.1 702438 702701 R identified by match to protein family HMM PF04359; hypothetical protein complement(702438..702701) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039879.1 CDS dacA NC_011080.1 702810 704021 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase complement(702810..704021) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039880.1 CDS SNSL254_A0694 NC_011080.1 704161 705294 R identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A complement(704161..705294) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039881.1 CDS mrdB NC_011080.1 705305 706417 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; cell wall shape-determining protein complement(705305..706417) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039882.1 CDS mrdA NC_011080.1 706420 708321 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 complement(706420..708321) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039883.1 CDS SNSL254_A0697 NC_011080.1 708352 708819 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(708352..708819) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039884.1 CDS SNSL254_A0698 NC_011080.1 708823 709140 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein complement(708823..709140) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039885.1 CDS SNSL254_A0699 NC_011080.1 709329 709469 R identified by glimmer; hypothetical protein complement(709329..709469) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039886.1 CDS cobC NC_011080.1 709469 710077 R identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162; alpha-ribazole-5'-phosphate phosphatase complement(709469..710077) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039887.1 CDS SNSL254_A0701 NC_011080.1 710174 711268 D 'cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase'; threonine-phosphate decarboxylase 710174..711268 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039888.1 CDS nadD NC_011080.1 711243 711893 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(711243..711893) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039889.1 CDS holA NC_011080.1 711886 712917 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(711886..712917) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039890.1 CDS SNSL254_A0704 NC_011080.1 712917 713507 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB complement(712917..713507) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039891.1 CDS leuS NC_011080.1 713522 716104 R 'leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase'; leucyl-tRNA synthetase complement(713522..716104) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039892.1 CDS SNSL254_A0706 NC_011080.1 716392 716682 D identified by match to protein family HMM PF08666; UxaA family hydrolase 716392..716682 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039893.1 CDS SNSL254_A0707 NC_011080.1 716645 717871 D identified by match to protein family HMM PF04295; UxaA family hydrolase 716645..717871 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039894.1 CDS SNSL254_A0708 NC_011080.1 717921 718874 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 717921..718874 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039895.1 CDS SNSL254_A0709 NC_011080.1 718942 720870 D identified by match to protein family HMM PF00158; match to protein family HMM PF06506; sigma-54 dependent transcriptional regulator 718942..720870 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039896.1 CDS SNSL254_A0710 NC_011080.1 720963 721436 D identified by match to protein family HMM PF07295; hypothetical protein 720963..721436 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039897.1 CDS SNSL254_A0711 NC_011080.1 721475 722470 R identified by match to protein family HMM PF08238; Sel1 repeat family complement(721475..722470) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039898.1 CDS SNSL254_A0712 NC_011080.1 722688 723302 D identified by match to protein family HMM PF06889; hypothetical protein 722688..723302 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039899.1 CDS SNSL254_A0713 NC_011080.1 723299 724732 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 723299..724732 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039900.1 CDS SNSL254_A0714 NC_011080.1 724744 725439 D identified by match to protein family HMM PF06889; hypothetical protein 724744..725439 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039901.1 CDS SNSL254_A0715 NC_011080.1 725436 726908 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 725436..726908 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039902.1 CDS SNSL254_A0716 NC_011080.1 726930 728609 R identified by match to protein family HMM PF00012; chaperone protein HscC complement(726930..728609) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039903.1 CDS SNSL254_A0717 NC_011080.1 728685 729923 R hypothetical protein complement(728685..729923) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039904.1 CDS rihA NC_011080.1 729955 730890 R 'Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific'; ribonucleoside hydrolase 1 complement(729955..730890) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039905.1 CDS gltL NC_011080.1 731007 731732 R identified by match to protein family HMM PF00005; glutamate/aspartate ABC transporter ATP-binding protein complement(731007..731732) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039906.1 CDS gltK NC_011080.1 731732 732406 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltK complement(731732..732406) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039907.1 CDS gltJ NC_011080.1 732406 733146 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltJ complement(732406..733146) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039908.1 CDS gltI NC_011080.1 733306 734214 R identified by match to protein family HMM PF00497; glutamate and aspartate transporter subunit complement(733306..734214) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039909.1 CDS SNSL254_A0724 NC_011080.1 734298 734552 R identified by glimmer; hypothetical protein complement(734298..734552) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039910.1 CDS lnt NC_011080.1 734569 736158 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(734569..736158) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039911.1 CDS corC NC_011080.1 736127 737005 R identified by match to protein family HMM PF00571; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC complement(736127..737005) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039912.1 CDS SNSL254_A0727 NC_011080.1 737163 737636 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease complement(737163..737636) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039913.1 CDS SNSL254_A0728 NC_011080.1 737633 738679 R identified by match to protein family HMM PF02562; PhoH family protein complement(737633..738679) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039914.1 CDS miaB NC_011080.1 738884 740308 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(738884..740308) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039915.1 CDS ubiF NC_011080.1 740452 741627 D 'catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q'; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 740452..741627 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039916.1 CDS SNSL254_A0731 NC_011080.1 741694 742269 R hypothetical protein complement(741694..742269) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039917.1 CDS asnB NC_011080.1 743336 745000 R 'functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP'; asparagine synthetase B complement(743336..745000) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039918.1 CDS SNSL254_A0740 NC_011080.1 745290 746042 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; UMP phosphatase complement(745290..746042) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039919.1 CDS nagC NC_011080.1 746089 747309 R identified by match to protein family HMM PF00480; N-acetylglucosamine repressor complement(746089..747309) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039920.1 CDS nagA NC_011080.1 747314 748468 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(747314..748468) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039921.1 CDS nagB NC_011080.1 748528 749328 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(748528..749328) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039922.1 CDS nagE NC_011080.1 749655 751607 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunit IIABC 749655..751607 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039923.1 CDS glnS NC_011080.1 751818 753485 D 'catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; glutaminyl-tRNA synthetase 751818..753485 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039924.1 CDS SNSL254_A0746 NC_011080.1 754146 755552 D identified by match to protein family HMM PF03573; outer membrane porin, OprD family 754146..755552 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039925.1 CDS SNSL254_A0747 NC_011080.1 755602 755934 D hypothetical protein 755602..755934 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039926.1 CDS SNSL254_A0748 NC_011080.1 755983 757287 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; citrate-proton symporter complement(755983..757287) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039927.1 CDS SNSL254_A0749 NC_011080.1 757338 758477 R identified by match to protein family HMM TIGR02484; citrate utilization protein B complement(757338..758477) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039928.1 CDS cobZ NC_011080.1 758464 759867 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(758464..759867) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039929.1 CDS SNSL254_A0751 NC_011080.1 759965 760891 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(759965..760891) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039930.1 CDS fur NC_011080.1 761006 761458 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(761006..761458) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039931.1 CDS fldA NC_011080.1 761740 762270 R 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin FldA complement(761740..762270) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039932.1 CDS SNSL254_A0755 NC_011080.1 762421 762714 R identified by match to protein family HMM PF01402; LexA regulated protein complement(762421..762714) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039933.1 CDS SNSL254_A0754 NC_011080.1 762713 762835 D identified by glimmer; hypothetical protein 762713..762835 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039934.1 CDS ybfF NC_011080.1 762848 763618 R identified by match to protein family HMM PF00561; match to protein family HMM PF07819; hypothetical protein complement(762848..763618) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039935.1 CDS seqA NC_011080.1 763803 764345 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 763803..764345 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039936.1 CDS pgm NC_011080.1 764370 766010 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 764370..766010 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039937.1 CDS SNSL254_A0759 NC_011080.1 766125 766610 R 5-nitroimidazole antibiotic resistance complement(766125..766610) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039938.1 CDS potE NC_011080.1 766675 767994 R 'catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system'; putrescine transporter complement(766675..767994) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039939.1 CDS SNSL254_A0761 NC_011080.1 767991 770189 R identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase complement(767991..770189) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039940.1 CDS SNSL254_A0762 NC_011080.1 770587 770700 D hypothetical protein 770587..770700 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039941.1 CDS SNSL254_A0763 NC_011080.1 770951 771628 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE complement(770951..771628) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039942.1 CDS SNSL254_A0764 NC_011080.1 771625 774309 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD complement(771625..774309) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039943.1 CDS kdpC NC_011080.1 774306 774890 R 'One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex'; potassium-transporting ATPase subunit C complement(774306..774890) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039944.1 CDS kdpB NC_011080.1 774899 776947 R 'One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions'; potassium-transporting ATPase subunit B complement(774899..776947) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039945.1 CDS kdpA NC_011080.1 776968 778647 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(776968..778647) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039946.1 CDS SNSL254_A0768 NC_011080.1 779073 779279 D hypothetical protein 779073..779279 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039947.1 CDS SNSL254_A0769 NC_011080.1 779390 780811 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 779390..780811 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039948.1 CDS SNSL254_A0770 NC_011080.1 780850 782331 R identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH complement(780850..782331) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039949.1 CDS SNSL254_A0771 NC_011080.1 782660 783403 D identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hydrolase-oxidase 782660..783403 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039950.1 CDS SNSL254_A0772 NC_011080.1 783419 784075 D identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 783419..784075 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039951.1 CDS SNSL254_A0773 NC_011080.1 784069 785001 D identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 784069..785001 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039952.1 CDS SNSL254_A0774 NC_011080.1 784991 785725 D identified by match to protein family HMM PF03746; LamB/YcsF family protein 784991..785725 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039953.1 CDS SNSL254_A0775 NC_011080.1 786049 786189 D hypothetical protein 786049..786189 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039954.1 CDS SNSL254_A0776 NC_011080.1 786239 786805 D identified by match to protein family HMM PF00589; hypothetical protein 786239..786805 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039955.1 CDS SNSL254_A0777 NC_011080.1 787454 787600 D hypothetical protein 787454..787600 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039956.1 CDS SNSL254_A0778 NC_011080.1 787644 788342 D hypothetical protein 787644..788342 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039957.1 CDS glf NC_011080.1 788628 789779 D identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031; UDP-galactopyranose mutase 788628..789779 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039958.1 CDS SNSL254_A0780 NC_011080.1 789779 790672 D identified by match to protein family HMM PF00535; glycosyl transferase 789779..790672 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039959.1 CDS SNSL254_A0781 NC_011080.1 790685 791818 D identified by match to protein family HMM PF00534; galactosyltransferase 790685..791818 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039960.1 CDS SNSL254_A0782 NC_011080.1 791947 792717 D identified by match to protein family HMM PF01061; O-antigen export system permease protein 791947..792717 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039961.1 CDS SNSL254_A0783 NC_011080.1 792721 793431 D identified by match to protein family HMM PF00005; ABC transporter domain-containing protein 792721..793431 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039962.1 CDS SNSL254_A0784 NC_011080.1 793525 795303 D glycosyltransferase, cell wall biogenesis 793525..795303 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039963.1 CDS SNSL254_A0785 NC_011080.1 795553 796329 D hypothetical protein 795553..796329 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039964.1 CDS SNSL254_A0786 NC_011080.1 796333 798282 D glycosyl transferase 796333..798282 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039965.1 CDS SNSL254_A0787 NC_011080.1 798350 798487 D hypothetical protein 798350..798487 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039966.1 CDS SNSL254_A0788 NC_011080.1 798536 799327 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 798536..799327 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039967.1 CDS SNSL254_A0789 NC_011080.1 799382 800428 R identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082; ammonia monooxygenase complement(799382..800428) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039968.1 CDS gltA NC_011080.1 800565 801848 R 'type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH'; type II citrate synthase complement(800565..801848) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039969.1 CDS sdhC NC_011080.1 802588 802992 D identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase cytochrome b556 large membrane subunit 802588..802992 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039970.1 CDS sdhD NC_011080.1 802986 803333 D identified by match to protein family HMM TIGR02968; succinate dehydrogenase cytochrome b556 small membrane subunit 802986..803333 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039971.1 CDS sdhA NC_011080.1 803333 805099 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 803333..805099 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039972.1 CDS sdhB NC_011080.1 805113 805832 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 805113..805832 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039973.1 CDS sucA NC_011080.1 806356 809157 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 806356..809157 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039974.1 CDS sucB NC_011080.1 809172 810380 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 809172..810380 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039975.1 CDS sucC NC_011080.1 810522 811688 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 810522..811688 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039976.1 CDS SNSL254_A0798 NC_011080.1 811688 812557 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 811688..812557 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039977.1 CDS SNSL254_A0799 NC_011080.1 812586 812711 D identified by glimmer; hypothetical protein 812586..812711 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039978.1 CDS SNSL254_A0800 NC_011080.1 812798 812923 D identified by glimmer; hypothetical protein 812798..812923 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039979.1 CDS SNSL254_A0801 NC_011080.1 813545 813670 D identified by glimmer; hypothetical protein 813545..813670 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039981.1 CDS cydA NC_011080.1 814140 815708 D identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 814140..815708 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039982.1 CDS cydB1 NC_011080.1 815724 816863 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 815724..816863 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039983.1 CDS SNSL254_A0805 NC_011080.1 816878 816991 D identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106; cyd operon protein YbgT 816878..816991 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039984.1 CDS SNSL254_A0806 NC_011080.1 816991 817284 D identified by match to protein family HMM PF09600; match to protein family HMM TIGR02112; hypothetical protein 816991..817284 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039985.1 CDS SNSL254_A0807 NC_011080.1 817513 817917 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase 817513..817917 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039986.1 CDS tolQ NC_011080.1 817914 818606 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 817914..818606 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039987.1 CDS tolR NC_011080.1 818610 819038 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 818610..819038 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039988.1 CDS tolA NC_011080.1 819103 820281 D 'inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins'; cell envelope integrity inner membrane protein TolA 819103..820281 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039989.1 CDS tolB NC_011080.1 820402 821697 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 820402..821697 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039990.1 CDS pal NC_011080.1 821732 822256 D identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; peptidoglycan-associated outer membrane lipoprotein 821732..822256 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039991.1 CDS SNSL254_A0813 NC_011080.1 822266 823054 D periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 822266..823054 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039992.1 CDS nadA NC_011080.1 824586 825629 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 824586..825629 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039993.1 CDS SNSL254_A0821 NC_011080.1 825654 826373 D identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; PnuC protein 825654..826373 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039994.1 CDS SNSL254_A0822 NC_011080.1 826370 827308 R involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB complement(826370..827308) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039995.1 CDS SNSL254_A0823 NC_011080.1 827419 827805 R homeobox protein complement(827419..827805) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039996.1 CDS aroG NC_011080.1 828125 829177 D 'catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive'; phospho-2-dehydro-3-deoxyheptonate aldolase 828125..829177 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039997.1 CDS SNSL254_A0825 NC_011080.1 829271 829816 R identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; fumarate hydratase I subunit beta complement(829271..829816) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039998.1 CDS SNSL254_A0826 NC_011080.1 829831 830676 R Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase complement(829831..830676) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002039999.1 CDS SNSL254_A0827 NC_011080.1 830806 831696 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 830806..831696 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040000.1 CDS SNSL254_A0828 NC_011080.1 831697 832623 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator complement(831697..832623) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040001.1 CDS SNSL254_A0829 NC_011080.1 832903 834171 D identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM PF06808; anion transporter 832903..834171 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040002.1 CDS SNSL254_A0830 NC_011080.1 834260 834466 D catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 834260..834466 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040003.1 CDS oadA NC_011080.1 834482 836257 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 834482..836257 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040004.1 CDS SNSL254_A0832 NC_011080.1 836270 837571 D identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta 836270..837571 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040005.1 CDS SNSL254_A0833 NC_011080.1 837690 838388 D hypothetical protein 837690..838388 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040006.1 CDS SNSL254_A0834 NC_011080.1 838768 839847 D identified by match to protein family HMM PF01032; ABC transporter permease 838768..839847 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040007.1 CDS SNSL254_A0835 NC_011080.1 839847 840623 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 839847..840623 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040008.1 CDS gpmA NC_011080.1 840714 841466 R '2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate'; phosphoglyceromutase complement(840714..841466) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040009.1 CDS galM NC_011080.1 841690 842730 R 'catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose'; aldose 1-epimerase complement(841690..842730) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040010.1 CDS galK NC_011080.1 842724 843872 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(842724..843872) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040011.1 CDS galT NC_011080.1 843875 844921 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(843875..844921) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040012.1 CDS galE NC_011080.1 844932 845948 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-galactose-4-epimerase complement(844932..845948) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040013.1 CDS SNSL254_A0841 NC_011080.1 846171 847079 R hypothetical protein complement(846171..847079) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040014.1 CDS SNSL254_A0842 NC_011080.1 847250 848725 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum transport ATP-binding protein ModF complement(847250..848725) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040015.1 CDS SNSL254_A0843 NC_011080.1 848793 849581 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE complement(848793..849581) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040016.1 CDS SNSL254_A0844 NC_011080.1 849710 849859 D hypothetical protein 849710..849859 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040017.1 CDS modA NC_011080.1 850026 850799 D with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 850026..850799 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040018.1 CDS modB NC_011080.1 850799 851488 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 850799..851488 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040019.1 CDS modC NC_011080.1 851491 852549 D Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 851491..852549 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040020.1 CDS SNSL254_A0848 NC_011080.1 852550 853410 R 'YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily'; phosphotransferase complement(852550..853410) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040021.1 CDS SNSL254_A0849 NC_011080.1 853532 854527 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 853532..854527 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040022.1 CDS SNSL254_A0850 NC_011080.1 854671 855954 R outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase complement(854671..855954) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040023.1 CDS hutI NC_011080.1 856153 857415 D 'catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway'; imidazolonepropionase 856153..857415 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040024.1 CDS hutG NC_011080.1 857412 858353 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 857412..858353 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040025.1 CDS hutC NC_011080.1 858398 859123 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018; histidine utilization repressor 858398..859123 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040026.1 CDS hutU NC_011080.1 859320 861005 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 859320..861005 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040027.1 CDS hutH NC_011080.1 861007 862527 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 861007..862527 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040028.1 CDS SNSL254_A0856 NC_011080.1 862612 863088 R YbhB; similar to rat and human kinase inhibitory proteins; kinase inhibitor protein complement(862612..863088) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040029.1 CDS bioA NC_011080.1 863146 864435 R 'catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate'; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(863146..864435) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040030.1 CDS bioB NC_011080.1 864522 865562 D identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 864522..865562 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040031.1 CDS bioF NC_011080.1 865559 866716 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 865559..866716 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040032.1 CDS bioC NC_011080.1 866700 867455 D 'methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth'; biotin biosynthesis protein BioC 866700..867455 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040033.1 CDS bioD NC_011080.1 867442 868134 D 'DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium'; dithiobiotin synthetase 867442..868134 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040034.1 CDS uvrB NC_011080.1 868785 870806 D 'The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion'; excinuclease ABC subunit B 868785..870806 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040035.1 CDS SNSL254_A0863 NC_011080.1 871296 873563 D leucine-rich repeat protein 871296..873563 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040036.1 CDS SNSL254_A0864 NC_011080.1 873655 874563 R identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein complement(873655..874563) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040037.1 CDS moaA NC_011080.1 874960 875949 D 'together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z'; molybdenum cofactor biosynthesis protein A 874960..875949 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040038.1 CDS moaB NC_011080.1 875971 876483 D identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B 875971..876483 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040039.1 CDS moaC NC_011080.1 876486 876971 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 876486..876971 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040040.1 CDS moaD NC_011080.1 876964 877209 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 876964..877209 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040041.1 CDS moaE NC_011080.1 877211 877663 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 877211..877663 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040042.1 CDS SNSL254_A0870 NC_011080.1 877711 878415 D identified by match to protein family HMM PF01027; hypothetical protein 877711..878415 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040043.1 CDS SNSL254_A0871 NC_011080.1 878561 879268 D integral membrane protein 878561..879268 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040044.1 CDS SNSL254_A0872 NC_011080.1 879298 879900 D hypothetical protein 879298..879900 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040045.1 CDS SNSL254_A0873 NC_011080.1 879908 880468 D hypothetical protein 879908..880468 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040046.1 CDS SNSL254_A0874 NC_011080.1 880471 881433 R hypothetical protein complement(880471..881433) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040047.1 CDS SNSL254_A0875 NC_011080.1 881433 882674 R identified by match to protein family HMM PF00614; cardiolipin synthase 2 complement(881433..882674) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040048.1 CDS SNSL254_A0876 NC_011080.1 882671 883429 R identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein complement(882671..883429) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040049.1 CDS SNSL254_A0877 NC_011080.1 883562 883972 D hypothetical protein 883562..883972 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040050.1 CDS SNSL254_A0878 NC_011080.1 883934 885040 R identified by match to protein family HMM PF01061; ABC transporter permease complement(883934..885040) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040051.1 CDS SNSL254_A0879 NC_011080.1 885156 886286 R identified by match to protein family HMM PF01061; inner membrane transport permease YbhS complement(885156..886286) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040052.1 CDS SNSL254_A0880 NC_011080.1 886279 888015 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(886279..888015) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040053.1 CDS SNSL254_A0881 NC_011080.1 888008 889003 R identified by match to protein family HMM PF00529; hypothetical protein complement(888008..889003) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040054.1 CDS SNSL254_A0882 NC_011080.1 889003 889677 R identified by match to protein family HMM PF00440; match to protein family HMM PF09209; DNA-binding transcriptional regulator complement(889003..889677) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040055.1 CDS SNSL254_A0883 NC_011080.1 889907 891268 D this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 889907..891268 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040056.1 CDS dinG NC_011080.1 891476 893620 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 891476..893620 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040057.1 CDS SNSL254_A0885 NC_011080.1 893650 894624 D identified by match to protein family HMM PF02885; glycosyl transferase 893650..894624 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040058.1 CDS SNSL254_A0887 NC_011080.1 894780 895040 R identified by match to protein family HMM PF07338; hypothetical protein complement(894780..895040) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040061.1 CDS SNSL254_A0889 NC_011080.1 895325 895591 R identified by match to protein family HMM PF01258; hypothetical protein complement(895325..895591) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040062.1 CDS SNSL254_A0890 NC_011080.1 895796 896722 D identified by match to protein family HMM PF05971; SAM-dependent methyltransferase 895796..896722 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040063.1 CDS SNSL254_A0891 NC_011080.1 896719 898941 R identified by match to protein family HMM PF00924; hypothetical protein complement(896719..898941) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040064.1 CDS glnQ NC_011080.1 899060 899782 R similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein complement(899060..899782) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040065.1 CDS glnP NC_011080.1 899779 900438 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease complement(899779..900438) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040066.1 CDS glnH NC_011080.1 900584 901330 R similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter substrate-binding protein complement(900584..901330) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040067.1 CDS SNSL254_A0895 NC_011080.1 901327 901449 R identified by glimmer; hypothetical protein complement(901327..901449) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040068.1 CDS SNSL254_A0896 NC_011080.1 901807 902310 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps complement(901807..902310) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040069.1 CDS SNSL254_A0897 NC_011080.1 902426 902584 R hypothetical protein complement(902426..902584) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040070.1 CDS SNSL254_A0898 NC_011080.1 902613 903500 R identified by match to protein family HMM PF00892; threonine and homoserine efflux system complement(902613..903500) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040071.1 CDS ompX NC_011080.1 903854 904369 D OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 903854..904369 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040072.1 CDS SNSL254_A0900 NC_011080.1 904432 906012 R identified by match to protein family HMM PF00884; hypothetical protein complement(904432..906012) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040073.1 CDS SNSL254_A0901 NC_011080.1 906013 906141 D identified by glimmer; hypothetical protein 906013..906141 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040074.1 CDS SNSL254_A0903 NC_011080.1 906591 907064 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 906591..907064 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040075.1 CDS SNSL254_A0904 NC_011080.1 907061 908173 D identified by match to protein family HMM PF03600; citrate transporter family protein 907061..908173 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040076.1 CDS SNSL254_A0905 NC_011080.1 908217 909137 R identified by match to protein family HMM PF03734; hypothetical protein complement(908217..909137) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040077.1 CDS SNSL254_A0906 NC_011080.1 909356 910948 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 909356..910948 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040078.1 CDS SNSL254_A0907 NC_011080.1 911404 912300 D hypothetical protein 911404..912300 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040079.1 CDS SNSL254_A0908 NC_011080.1 912329 912859 R identified by match to protein family HMM PF08282; sugar phosphatase SupH complement(912329..912859) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040080.1 CDS SNSL254_A0909 NC_011080.1 913253 914518 R identified by match to protein family HMM PF07350; hypothetical protein complement(913253..914518) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040081.1 CDS SNSL254_A0910 NC_011080.1 914780 915589 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; sugar phosphatase SupH 914780..915589 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040082.1 CDS SNSL254_A0911 NC_011080.1 915667 918099 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; formate C-acetyltransferase 3 complement(915667..918099) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040083.1 CDS SNSL254_A0912 NC_011080.1 918105 919004 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating protein family complement(918105..919004) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040084.1 CDS moeB NC_011080.1 919282 920031 R 'ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase'; molybdopterin biosynthesis protein MoeB complement(919282..920031) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040085.1 CDS SNSL254_A0914 NC_011080.1 920031 921266 R is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA complement(920031..921266) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040086.1 CDS SNSL254_A0915 NC_011080.1 921470 922411 D identified by match to protein family HMM PF01112; L-asparaginase 921470..922411 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040087.1 CDS SNSL254_A0916 NC_011080.1 922422 924293 D with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 922422..924293 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040088.1 CDS SNSL254_A0917 NC_011080.1 924326 925864 D identified by match to protein family HMM PF00496; glutathione-binding protein GsiB 924326..925864 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040089.1 CDS SNSL254_A0918 NC_011080.1 925925 926845 D identified by match to protein family HMM PF00528; ABC transporter permease 925925..926845 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040090.1 CDS SNSL254_A0919 NC_011080.1 926848 927759 D identified by match to protein family HMM PF00528; glutathione transport system permease GsiD 926848..927759 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040091.1 CDS rimO NC_011080.1 927850 929175 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(927850..929175) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040092.1 CDS SNSL254_A0921 NC_011080.1 929202 929336 D identified by glimmer; hypothetical protein 929202..929336 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040093.1 CDS bssR NC_011080.1 929406 929789 D 'BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing'; biofilm formation regulatory protein BssR 929406..929789 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040094.1 CDS SNSL254_A0923 NC_011080.1 930240 930404 D identified by glimmer; hypothetical protein 930240..930404 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040095.1 CDS SNSL254_A0924 NC_011080.1 930503 931018 D citrate lyase 930503..931018 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040096.1 CDS SNSL254_A0925 NC_011080.1 931041 931790 D identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 931041..931790 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040097.1 CDS SNSL254_A0926 NC_011080.1 931801 932748 D identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 931801..932748 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040098.1 CDS SNSL254_A0928 NC_011080.1 933042 934205 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 933042..934205 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040099.1 CDS SNSL254_A0929 NC_011080.1 934654 936339 D identified by match to protein family HMM PF01266; match to protein family HMM PF05187; electron transfer flavoprotein-ubiquinone oxidoreductase 934654..936339 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040100.1 CDS SNSL254_A0930 NC_011080.1 936345 937235 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(936345..937235) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040101.1 CDS SNSL254_A0931 NC_011080.1 937500 937925 R citrate transporter family protein complement(937500..937925) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040102.1 CDS SNSL254_A0934 NC_011080.1 938960 939586 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase family protein complement(938960..939586) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040103.1 CDS SNSL254_A0935 NC_011080.1 939830 941032 D 'penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 939830..941032 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040104.1 CDS SNSL254_A0936 NC_011080.1 941078 941836 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DNA-binding transcriptional repressor DeoR complement(941078..941836) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040105.1 CDS SNSL254_A0937 NC_011080.1 941908 942582 R identified by match to protein family HMM PF01569; undecaprenyl pyrophosphate phosphatase complement(941908..942582) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040106.1 CDS SNSL254_A0938 NC_011080.1 942829 944061 D identified by match to protein family HMM PF07690; multidrug resistance protein MdtM 942829..944061 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040107.1 CDS SNSL254_A0939 NC_011080.1 944115 944930 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; phosphatase YbjI complement(944115..944930) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040108.1 CDS SNSL254_A0940 NC_011080.1 944927 946138 R identified by match to protein family HMM PF07690; hypothetical protein complement(944927..946138) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040109.1 CDS SNSL254_A0941 NC_011080.1 946306 946926 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 946306..946926 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040110.1 CDS SNSL254_A0943 NC_011080.1 947043 948728 R identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein complement(947043..948728) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040111.2 CDS SNSL254_A0944 NC_011080.1 948999 949376 D hypothetical protein 948999..949376 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040112.1 CDS grxA NC_011080.1 949408 949671 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(949408..949671) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040113.1 CDS SNSL254_A0946 NC_011080.1 949841 950131 D YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 949841..950131 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040114.1 CDS nfsA NC_011080.1 950115 950837 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 950115..950837 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040115.1 CDS rimK NC_011080.1 950895 951797 D responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 950895..951797 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040116.1 CDS SNSL254_A0949 NC_011080.1 951893 952369 D hypothetical protein 951893..952369 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040117.1 CDS SNSL254_A0950 NC_011080.1 952715 953830 D identified by match to protein family HMM PF01547; putrescine ABC transporter substrate-binding protein 952715..953830 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040118.1 CDS potG NC_011080.1 953918 955051 D part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 953918..955051 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040119.1 CDS potH NC_011080.1 955061 956014 D identified by match to protein family HMM PF00528; putrescine ABC transporter permease 955061..956014 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040120.1 CDS potI NC_011080.1 956011 956856 D identified by match to protein family HMM PF00528; putrescine ABC transporter permease 956011..956856 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040121.1 CDS SNSL254_A0954 NC_011080.1 956840 957403 D hypothetical protein 956840..957403 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040122.1 CDS rumB NC_011080.1 957446 958576 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 957446..958576 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040123.1 CDS SNSL254_A0956 NC_011080.1 958859 960202 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 958859..960202 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083619.1 CDS SNSL254_A0957 NC_011080.1 960232 960552 D hypothetical protein 960232..960552 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040124.1 CDS SNSL254_A0958 NC_011080.1 960562 962049 D identified by match to protein family HMM PF00884; sulfatase 960562..962049 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040125.1 CDS artJ NC_011080.1 962267 962998 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein complement(962267..962998) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040126.1 CDS artM NC_011080.1 963235 963903 R with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM complement(963235..963903) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040127.1 CDS artQ NC_011080.1 963903 964619 R with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ complement(963903..964619) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040128.1 CDS artI NC_011080.1 964626 965363 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein complement(964626..965363) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040129.1 CDS artP NC_011080.1 965375 966103 R With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit complement(965375..966103) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040130.1 CDS SNSL254_A0964 NC_011080.1 966333 966848 R induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein complement(966333..966848) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040131.1 CDS SNSL254_A0965 NC_011080.1 966976 967299 D identified by match to protein family HMM PF01906; hypothetical protein 966976..967299 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040132.1 CDS SNSL254_A0966 NC_011080.1 967296 968126 D identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase AmiD 967296..968126 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040133.1 CDS SNSL254_A0967 NC_011080.1 968123 969136 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family complement(968123..969136) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040134.1 CDS SNSL254_A0968 NC_011080.1 969232 970665 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; NAD dependent epimerase/dehydratase family protein complement(969232..970665) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040135.1 CDS ltaE NC_011080.1 970676 971677 R 'low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine'; L-threonine aldolase complement(970676..971677) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040136.1 CDS poxB NC_011080.1 971716 973434 R catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase complement(971716..973434) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040137.1 CDS hcr NC_011080.1 973592 974563 R identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; HCP oxidoreductase complement(973592..974563) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040138.1 CDS hcp NC_011080.1 974572 976224 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(974572..976224) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040139.1 CDS SNSL254_A0973 NC_011080.1 976368 977267 R identified by match to protein family HMM PF03956; hypothetical protein complement(976368..977267) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040140.1 CDS SNSL254_A0974 NC_011080.1 977469 979127 D protein nucleotide triphosphate hydrolase domain containing protein 977469..979127 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040141.1 CDS SNSL254_A0975 NC_011080.1 979124 980074 R identified by match to protein family HMM PF04393; VirK-like protein complement(979124..980074) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040142.1 CDS SNSL254_A0976 NC_011080.1 980220 981338 D confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 980220..981338 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040143.1 CDS SNSL254_A0977 NC_011080.1 981335 983281 D with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 981335..983281 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040144.1 CDS cspD NC_011080.1 983411 983632 R identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381; cold shock domain-containing protein CspD complement(983411..983632) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040145.1 CDS clpS NC_011080.1 983956 984276 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 983956..984276 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040146.1 CDS clpA NC_011080.1 984307 986583 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 984307..986583 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040147.1 CDS SNSL254_A0981 NC_011080.1 986797 986994 R hypothetical protein complement(986797..986994) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040148.1 CDS SNSL254_A0982 NC_011080.1 987156 987533 R phage integrase complement(987156..987533) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040149.1 CDS SNSL254_A0984 NC_011080.1 988122 988799 R identified by match to protein family HMM PF00857; hypothetical protein complement(988122..988799) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040150.1 CDS SNSL254_A0985 NC_011080.1 988819 989679 R identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin complement(988819..989679) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040151.1 CDS SNSL254_A0986 NC_011080.1 989788 990699 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 989788..990699 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040152.1 CDS infA NC_011080.1 990790 991008 R 'stimulates the activities of the other two initiation factors, IF-2 and IF-3'; translation initiation factor IF-1 complement(990790..991008) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040153.1 CDS aat NC_011080.1 991320 992024 R 'leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys'; leucyl/phenylalanyl-tRNA--protein transferase complement(991320..992024) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040154.1 CDS SNSL254_A0989 NC_011080.1 992069 993790 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(992069..993790) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040155.1 CDS cydD NC_011080.1 993791 995557 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(993791..995557) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040156.1 CDS trxB NC_011080.1 995671 996639 R catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase complement(995671..996639) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040157.1 CDS SNSL254_A0992 NC_011080.1 996803 996955 R identified by glimmer; hypothetical protein complement(996803..996955) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040158.1 CDS lrp NC_011080.1 997185 997679 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 997185..997679 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040159.1 CDS SNSL254_A0994 NC_011080.1 997814 1001896 D DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 997814..1001896 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040160.1 CDS lolA NC_011080.1 1002039 1002650 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1002039..1002650 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040161.1 CDS SNSL254_A0996 NC_011080.1 1002660 1004003 D identified by match to protein family HMM PF00004; recombination factor protein RarA 1002660..1004003 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040162.1 CDS serS NC_011080.1 1004262 1005554 D 'catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; seryl-tRNA synthetase 1004262..1005554 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040163.1 CDS SNSL254_A0998 NC_011080.1 1005792 1008236 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 1005792..1008236 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040164.1 CDS dmsB_2 NC_011080.1 1008247 1008864 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B 1008247..1008864 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040165.1 CDS dmsC NC_011080.1 1008866 1009729 D identified by match to protein family HMM PF04976; dmso reductase anchor subunit 1008866..1009729 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040166.1 CDS SNSL254_A1001 NC_011080.1 1010079 1011227 D identified by match to protein family HMM PF07690; MFS family transporter protein 1010079..1011227 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040167.1 CDS SNSL254_A1002 NC_011080.1 1011445 1012866 D identified by match to protein family HMM PF00324; inner membrane transporter YcaM 1011445..1012866 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040168.1 CDS pflA NC_011080.1 1013167 1013964 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(1013167..1013964) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040169.1 CDS SNSL254_A1004 NC_011080.1 1014092 1014256 D hypothetical protein 1014092..1014256 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040170.1 CDS SNSL254_A1005 NC_011080.1 1014540 1015499 D SopD-like protein 1014540..1015499 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040171.1 CDS pflB2 NC_011080.1 1015575 1017857 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase complement(1015575..1017857) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040172.1 CDS SNSL254_A1007 NC_011080.1 1017917 1018732 R identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790; formate transporter FocA complement(1017917..1018732) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040173.1 CDS SNSL254_A1008 NC_011080.1 1019179 1021014 R identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702; hypothetical protein complement(1019179..1021014) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040174.1 CDS SNSL254_A1009 NC_011080.1 1021076 1021768 D identified by match to protein family HMM PF04239; hypothetical protein 1021076..1021768 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040175.1 CDS serC NC_011080.1 1021954 1023042 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1021954..1023042 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040176.1 CDS aroA NC_011080.1 1023113 1024396 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1023113..1024396 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040177.1 CDS SNSL254_A1012 NC_011080.1 1024539 1025300 D identified by match to protein family HMM PF01435; peptidase M48, Ste24p 1024539..1025300 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040178.1 CDS cmk NC_011080.1 1025473 1026156 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1025473..1026156 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040179.1 CDS rpsA NC_011080.1 1026270 1027943 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1026270..1027943 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040180.1 CDS ihfB NC_011080.1 1028099 1028383 D 'This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control'; integration host factor subunit beta 1028099..1028383 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040181.1 CDS SNSL254_A1016 NC_011080.1 1028664 1030877 D identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; hypothetical protein 1028664..1030877 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040182.1 CDS msbA NC_011080.1 1030914 1032662 D involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding protein/permease 1030914..1032662 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040183.1 CDS lpxK NC_011080.1 1032659 1033636 D 'transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate'; tetraacyldisaccharide 4'-kinase 1032659..1033636 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040184.1 CDS SNSL254_A1019 NC_011080.1 1033680 1034912 D identified by match to protein family HMM PF06224; hypothetical protein 1033680..1034912 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040185.1 CDS SNSL254_A1020 NC_011080.1 1034964 1035146 D identified by match to protein family HMM PF03966; hypothetical protein 1034964..1035146 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040186.1 CDS kdsB NC_011080.1 1035143 1035889 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1035143..1035889 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040187.1 CDS SNSL254_A1022 NC_011080.1 1036100 1036993 D hypothetical protein 1036100..1036993 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040188.1 CDS SNSL254_A1023 NC_011080.1 1036973 1037749 R identified by match to protein family HMM PF02698; hypothetical protein complement(1036973..1037749) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040189.1 CDS smtA NC_011080.1 1037885 1038688 D involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA 1037885..1038688 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040190.1 CDS mukF NC_011080.1 1038681 1040003 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1038681..1040003 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040191.1 CDS mukE NC_011080.1 1039957 1040688 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1039957..1040688 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040192.1 CDS mukB NC_011080.1 1040688 1045154 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1040688..1045154 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040193.1 CDS SNSL254_A1028 NC_011080.1 1045499 1047346 D identified by match to protein family HMM PF01471; hypothetical protein 1045499..1047346 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040194.1 CDS SNSL254_A1029 NC_011080.1 1047606 1048154 D identified by match to protein family HMM PF05951; match to protein family HMM PF08291; Tat (twin-arginine translocation) pathway signal sequence domain/peptidase M15 family protein 1047606..1048154 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040195.1 CDS SNSL254_A1030 NC_011080.1 1048182 1048829 D identified by match to protein family HMM PF00753; hydroxyacylglutathione hydrolase 1048182..1048829 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040196.1 CDS aspC NC_011080.1 1048891 1050081 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1048891..1050081) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040197.1 CDS SNSL254_A1032 NC_011080.1 1050266 1051357 R identified by match to protein family HMM PF00267; outer membrane protein F complement(1050266..1051357) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040198.1 CDS SNSL254_A1033 NC_011080.1 1051647 1051799 D identified by glimmer; hypothetical protein 1051647..1051799 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040199.1 CDS SNSL254_A1034 NC_011080.1 1051888 1052007 R identified by glimmer; hypothetical protein complement(1051888..1052007) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040200.1 CDS asnC NC_011080.1 1051964 1053364 R 'catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; asparaginyl-tRNA synthetase complement(1051964..1053364) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040201.1 CDS SNSL254_A1036 NC_011080.1 1053565 1054026 R identified by match to protein family HMM PF01037; leucine regulator complement(1053565..1054026) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040202.1 CDS SNSL254_A1037 NC_011080.1 1054023 1054244 R identified by glimmer; hypothetical protein complement(1054023..1054244) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040203.1 CDS dpaL NC_011080.1 1054343 1055557 D 'catalyzes the formation of pyruvate from 2,3-diaminopropionate'; diaminopropionate ammonia-lyase 1054343..1055557 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040204.1 CDS SNSL254_A1039 NC_011080.1 1055631 1055789 D hypothetical protein 1055631..1055789 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040205.1 CDS SNSL254_A1040 NC_011080.1 1055803 1057236 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; transcriptional regulator, Lrp family 1055803..1057236 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040206.1 CDS pncB NC_011080.1 1057317 1058519 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1057317..1058519) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040207.1 CDS SNSL254_A1042 NC_011080.1 1058714 1060006 R identified by match to protein family HMM PF00589; integrase complement(1058714..1060006) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040208.1 CDS SNSL254_A1043 NC_011080.1 1060051 1060299 R identified by match to protein family HMM PF06806; excisionase complement(1060051..1060299) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040209.1 CDS SNSL254_A1044 NC_011080.1 1060340 1060579 R hypothetical protein complement(1060340..1060579) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040210.1 CDS SNSL254_A1045 NC_011080.1 1060622 1061731 R identified by match to protein family HMM PF03837; gifsy-2 prophage RecT complement(1060622..1061731) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040211.1 CDS SNSL254_A1046 NC_011080.1 1061742 1064627 R identified by match to protein family HMM PF06630; gifsy-1 prophage RecE complement(1061742..1064627) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040212.1 CDS SNSL254_A1047 NC_011080.1 1064754 1064990 R hypothetical protein complement(1064754..1064990) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040213.1 CDS SNSL254_A1048 NC_011080.1 1065075 1065233 R hypothetical protein complement(1065075..1065233) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040214.1 CDS SNSL254_A1049 NC_011080.1 1065355 1065501 D identified by glimmer; hypothetical protein 1065355..1065501 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040215.2 CDS SNSL254_A1050 NC_011080.1 1065536 1065946 R regulatory protein complement(1065536..1065946) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040216.2 CDS SNSL254_A1051 NC_011080.1 1066325 1066645 D Gifsy-1 prophage cI protein 1066325..1066645 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040217.1 CDS SNSL254_A1052 NC_011080.1 1066636 1066752 D identified by glimmer; hypothetical protein 1066636..1066752 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040218.1 CDS SNSL254_A1053 NC_011080.1 1066730 1067713 D identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; gifsy-1 prophage PrpO 1066730..1067713 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040219.1 CDS SNSL254_A1054 NC_011080.1 1067716 1068465 D identified by match to protein family HMM PF01695; replication protein 1067716..1068465 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040220.1 CDS SNSL254_A1055 NC_011080.1 1068476 1068823 D identified by match to protein family HMM PF06163; hypothetical protein 1068476..1068823 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040221.1 CDS SNSL254_A1057 NC_011080.1 1069347 1069499 D hypothetical protein 1069347..1069499 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040222.1 CDS SNSL254_A1058 NC_011080.1 1069791 1070024 D identified by match to protein family HMM PF06183; hypothetical protein 1069791..1070024 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040223.1 CDS SNSL254_A1059 NC_011080.1 1070440 1071042 D identified by match to protein family HMM PF07105; gifsy-2 prophage protein 1070440..1071042 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040224.1 CDS SNSL254_A1060 NC_011080.1 1071042 1071248 D hypothetical protein 1071042..1071248 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040225.1 CDS SNSL254_A1061 NC_011080.1 1071251 1071862 D identified by match to protein family HMM PF05766; bacteriophage Lambda NinG protein 1071251..1071862 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040226.1 CDS SNSL254_A1062 NC_011080.1 1071995 1072792 D antitermination protein Q 1071995..1072792 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040227.1 CDS SNSL254_A1063 NC_011080.1 1074421 1074894 R hypothetical protein complement(1074421..1074894) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040228.1 CDS SNSL254_A1064 NC_011080.1 1075377 1075712 D identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family 1075377..1075712 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040229.1 CDS SNSL254_A1065 NC_011080.1 1075699 1076148 D identified by match to protein family HMM PF00959; phage lysozyme 1075699..1076148 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040230.1 CDS SNSL254_A1066 NC_011080.1 1076166 1076645 D identified by match to protein family HMM PF03245; bacteriophage lysis protein 1076166..1076645 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040231.1 CDS SNSL254_A1067 NC_011080.1 1076853 1077386 D identified by match to protein family HMM PF07278; gifsy-2 prophage protein 1076853..1077386 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040232.1 CDS SNSL254_A1068 NC_011080.1 1077340 1079481 D identified by match to protein family HMM PF05876; phage terminase large subunit 1077340..1079481 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040233.1 CDS SNSL254_A1069 NC_011080.1 1079478 1079684 D hypothetical protein 1079478..1079684 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040234.1 CDS SNSL254_A1070 NC_011080.1 1079681 1081228 D identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; phage portal protein lambda family 1079681..1081228 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040235.1 CDS SNSL254_A1071 NC_011080.1 1081179 1083233 D identified by match to protein family HMM PF00574; ATP-dependent protease 1081179..1083233 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040236.1 CDS SNSL254_A1072 NC_011080.1 1083324 1083647 D recombinase A 1083324..1083647 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040237.1 CDS SNSL254_A1073 NC_011080.1 1083640 1083939 D hypothetical protein 1083640..1083939 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040238.1 CDS SNSL254_A1074 NC_011080.1 1083920 1084486 D identified by match to protein family HMM PF06763; prophage minor tail protein Z 1083920..1084486 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040239.1 CDS SNSL254_A1075 NC_011080.1 1084483 1084884 D identified by match to protein family HMM PF06141; phage minor tail protein U 1084483..1084884 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040240.1 CDS SNSL254_A1076 NC_011080.1 1084896 1085645 D identified by match to protein family HMM PF02368; gifsy-2 prophage VmtV 1084896..1085645 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040241.1 CDS SNSL254_A1077 NC_011080.1 1085691 1086089 D identified by match to protein family HMM PF06894; match to protein family HMM TIGR01674; phage minor tail protein G 1085691..1086089 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040242.1 CDS SNSL254_A1078 NC_011080.1 1086152 1086415 D identified by match to protein family HMM PF06223; match to protein family HMM TIGR01715; phage tail assembly protein T 1086152..1086415 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040243.1 CDS SNSL254_A1079 NC_011080.1 1086396 1089482 D identified by match to protein family HMM PF06791; match to protein family HMM PF09718; match to protein family HMM TIGR01541; gifsy-1 prophage VmtH 1086396..1089482 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040244.1 CDS SNSL254_A1080 NC_011080.1 1089479 1089811 D identified by match to protein family HMM PF05939; phage minor tail protein 1089479..1089811 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040245.1 CDS sodC NC_011080.1 1090524 1091057 R identified by match to protein family HMM PF00080; copper/zinc superoxide dismutase complement(1090524..1091057) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040246.1 CDS SNSL254_A1083 NC_011080.1 1091147 1091842 D identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600; phage minor tail protein L 1091147..1091842 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040247.2 CDS SNSL254_A1084 NC_011080.1 1091852 1092589 D identified by match to protein family HMM PF00877; tail assembly protein 1091852..1092589 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040248.2 CDS SNSL254_A1085 NC_011080.1 1092487 1093191 D identified by match to protein family HMM PF06805; bacteriophage lambda tail assembly protein I 1092487..1093191 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040249.1 CDS SNSL254_A1086 NC_011080.1 1093263 1096613 D identified by match to protein family HMM PF00041; match to protein family HMM PF09327; host specificity protein J 1093263..1096613 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040250.1 CDS SNSL254_A1087 NC_011080.1 1096652 1096894 D hypothetical protein 1096652..1096894 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040253.2 CDS SNSL254_A1090 NC_011080.1 1096948 1099386 D identified by match to protein family HMM PF03406; match to protein family HMM PF07484; tail fiber protein 1096948..1099386 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040254.1 CDS SNSL254_A1091 NC_011080.1 1099386 1099967 D identified by match to protein family HMM PF02413; tail fiber assembly like-protein 1099386..1099967 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040255.1 CDS SNSL254_A1092 NC_011080.1 1100443 1101411 D secreted effector protein 1100443..1101411 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040256.1 CDS SNSL254_A1095 NC_011080.1 1102059 1102685 R identified by match to protein family HMM PF02586; hypothetical protein complement(1102059..1102685) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040257.1 CDS SNSL254_A1094 NC_011080.1 1102667 1102816 D hypothetical protein 1102667..1102816 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040258.1 CDS SNSL254_A1096 NC_011080.1 1103038 1103724 R gifsy-2 prophage protein complement(1103038..1103724) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040259.1 CDS SNSL254_A1097 NC_011080.1 1103995 1104186 R Gifsy-2 prophage MsgA complement(1103995..1104186) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040260.1 CDS pepN NC_011080.1 1104613 1107225 D identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase 1104613..1107225 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040261.1 CDS pyrD NC_011080.1 1107433 1108443 D 'catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors'; dihydroorotate dehydrogenase 2 1107433..1108443 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040262.1 CDS SNSL254_A1100 NC_011080.1 1108609 1109151 D identified by match to protein family HMM PF07126; hypothetical protein 1108609..1109151 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040263.1 CDS SNSL254_A1101 NC_011080.1 1109148 1110257 R identified by match to protein family HMM PF00111; match to protein family HMM PF03473; match to protein family HMM PF03476; MOSC domain-containing protein complement(1109148..1110257) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040264.1 CDS rlmL NC_011080.1 1110356 1112464 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1110356..1112464 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040265.1 CDS SNSL254_A1103 NC_011080.1 1112477 1114384 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1112477..1114384 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040266.1 CDS SNSL254_A1104 NC_011080.1 1114399 1115652 D identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; paraquat-inducible protein A 1114399..1115652 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040267.1 CDS SNSL254_A1105 NC_011080.1 1115657 1117297 D identified by match to protein family HMM PF02470; paraquat-inducible protein B 1115657..1117297 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040268.1 CDS SNSL254_A1106 NC_011080.1 1117294 1117857 D identified by match to protein family HMM PF03886; lipoprotein 1117294..1117857 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040269.1 CDS SNSL254_A1107 NC_011080.1 1117812 1117949 R identified by glimmer; hypothetical protein complement(1117812..1117949) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040270.1 CDS fabA NC_011080.1 1118380 1118898 R 'catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP'; 3-hydroxydecanoyl-ACP dehydratase complement(1118380..1118898) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040271.1 CDS SNSL254_A1109 NC_011080.1 1118967 1120727 R identified by match to protein family HMM PF05362; protease La complement(1118967..1120727) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040272.1 CDS SNSL254_A1110 NC_011080.1 1120913 1121365 D identified by match to protein family HMM PF06303; hypothetical protein 1120913..1121365 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040273.1 CDS ompA NC_011080.1 1121437 1122513 R 'OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d'; outer membrane protein A complement(1121437..1122513) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040274.1 CDS SNSL254_A1112 NC_011080.1 1122846 1123355 R identified by match to protein family HMM PF03846; match to protein family HMM TIGR00623; SOS cell division inhibitor complement(1122846..1123355) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040275.1 CDS SNSL254_A1113 NC_011080.1 1123572 1124177 D identified by match to protein family HMM PF04993; match to protein family HMM PF04994; TfoX family protein 1123572..1124177 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040276.1 CDS yccS NC_011080.1 1124164 1126317 R identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667; hypothetical protein complement(1124164..1126317) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040277.1 CDS SNSL254_A1115 NC_011080.1 1126336 1126782 R identified by match to protein family HMM PF03733; hypothetical protein complement(1126336..1126782) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040278.1 CDS helD NC_011080.1 1126906 1128960 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1126906..1128960 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040279.1 CDS mgsA NC_011080.1 1128996 1129454 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(1128996..1129454) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040280.1 CDS SNSL254_A1118 NC_011080.1 1129549 1130211 R hypothetical protein complement(1129549..1130211) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040281.1 CDS SNSL254_A1120 NC_011080.1 1130843 1131160 R identified by match to protein family HMM PF08755; match to protein family HMM TIGR02097; heat shock protein HspQ complement(1130843..1131160) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040282.1 CDS SNSL254_A1121 NC_011080.1 1131218 1132429 R SAM-dependent methyltransferase complement(1131218..1132429) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040283.1 CDS SNSL254_A1122 NC_011080.1 1132644 1133192 D identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 1132644..1133192 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040284.1 CDS SNSL254_A1123 NC_011080.1 1133209 1133997 D identified by match to protein family HMM PF00165; araC family transcriptional regulator 1133209..1133997 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040285.1 CDS SNSL254_A1124 NC_011080.1 1134046 1134327 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1134046..1134327 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040286.1 CDS SNSL254_A1125 NC_011080.1 1134324 1134653 R transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE complement(1134324..1134653) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040287.1 CDS SNSL254_A1126 NC_011080.1 1134740 1135399 R identified by match to protein family HMM PF01027; hypothetical protein complement(1134740..1135399) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040288.1 CDS SNSL254_A1127 NC_011080.1 1135465 1135614 D identified by glimmer; hypothetical protein 1135465..1135614 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040289.1 CDS SNSL254_A1129 NC_011080.1 1135987 1137006 R identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family complement(1135987..1137006) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040290.1 CDS SNSL254_A1130 NC_011080.1 1137007 1137231 R hypothetical protein complement(1137007..1137231) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040291.1 CDS SNSL254_A1131 NC_011080.1 1137444 1137626 R hypothetical protein complement(1137444..1137626) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040292.1 CDS SNSL254_A1132 NC_011080.1 1137629 1138183 R hypothetical protein complement(1137629..1138183) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040293.1 CDS SNSL254_A1133 NC_011080.1 1138180 1140444 R hypothetical protein complement(1138180..1140444) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040294.1 CDS SNSL254_A1134 NC_011080.1 1140474 1140719 R hypothetical protein complement(1140474..1140719) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040295.1 CDS SNSL254_A1135 NC_011080.1 1140727 1141050 R identified by glimmer; hypothetical protein complement(1140727..1141050) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040296.1 CDS SNSL254_A1136 NC_011080.1 1142446 1142661 R identified by glimmer; hypothetical protein complement(1142446..1142661) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040297.1 CDS SNSL254_A1137 NC_011080.1 1142695 1143042 D hypothetical protein 1142695..1143042 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040298.1 CDS SNSL254_A1138 NC_011080.1 1143065 1143289 D hypothetical protein 1143065..1143289 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040299.1 CDS SNSL254_A1139 NC_011080.1 1143292 1144272 D replication protein 1143292..1144272 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040300.1 CDS SNSL254_A1140 NC_011080.1 1144269 1145657 D identified by match to protein family HMM PF03796; replicative DNA helicase 1144269..1145657 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040301.1 CDS SNSL254_A1141 NC_011080.1 1145695 1146375 D hypothetical protein 1145695..1146375 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040302.1 CDS SNSL254_A1142 NC_011080.1 1146379 1146627 D hypothetical protein 1146379..1146627 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040303.1 CDS SNSL254_A1143 NC_011080.1 1146620 1147222 D identified by match to protein family HMM PF05063; adenine methylase 1146620..1147222 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040304.1 CDS SNSL254_A1144 NC_011080.1 1147389 1147727 D hypothetical protein 1147389..1147727 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040305.1 CDS SNSL254_A1145 NC_011080.1 1147911 1148102 D hypothetical protein 1147911..1148102 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040306.1 CDS SNSL254_A1146 NC_011080.1 1148171 1148767 D identified by match to protein family HMM PF07105; gifsy-2 prophage protein 1148171..1148767 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040307.1 CDS SNSL254_A1147 NC_011080.1 1149054 1149632 D identified by match to protein family HMM PF06576; hypothetical protein 1149054..1149632 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040308.1 CDS SNSL254_A1148 NC_011080.1 1150025 1150213 D identified by glimmer; hypothetical protein 1150025..1150213 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040309.1 CDS SNSL254_A1149 NC_011080.1 1150410 1150718 D phage-holin analog protein 1150410..1150718 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040310.1 CDS SNSL254_A1150 NC_011080.1 1150696 1151235 D identified by match to protein family HMM PF00959; lysozyme 1150696..1151235 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040311.1 CDS SNSL254_A1151 NC_011080.1 1151405 1151542 D bacteriophage protein 1151405..1151542 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040312.1 CDS SNSL254_A1152 NC_011080.1 1151577 1152008 D identified by match to protein family HMM PF03245; bacteriophage lysis protein 1151577..1152008 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040313.1 CDS SNSL254_A1153 NC_011080.1 1152509 1153138 D hypothetical protein 1152509..1153138 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040314.1 CDS SNSL254_A1154 NC_011080.1 1153141 1154763 D gp33 TerL 1153141..1154763 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040315.1 CDS SNSL254_A1155 NC_011080.1 1154796 1156232 D identified by match to protein family HMM PF09714; match to protein family HMM TIGR01555; phage-associated protein family 1154796..1156232 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040316.1 CDS SNSL254_A1156 NC_011080.1 1156246 1156863 D identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; phage Mu protein F like protein 1156246..1156863 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040317.1 CDS SNSL254_A1157 NC_011080.1 1156867 1158099 D hypothetical protein 1156867..1158099 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040318.1 CDS SNSL254_A1158 NC_011080.1 1158104 1158601 D bacteriophage protein 1158104..1158601 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040319.1 CDS SNSL254_A1159 NC_011080.1 1158613 1159554 D bacteriophage protein 1158613..1159554 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040320.1 CDS SNSL254_A1160 NC_011080.1 1159596 1159985 D bacteriophage protein 1159596..1159985 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040321.1 CDS SNSL254_A1161 NC_011080.1 1159951 1160358 D bacteriophage protein 1159951..1160358 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040322.1 CDS SNSL254_A1162 NC_011080.1 1160355 1160909 D bacteriophage protein 1160355..1160909 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040323.1 CDS SNSL254_A1163 NC_011080.1 1160896 1161285 D bacteriophage protein 1160896..1161285 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040324.1 CDS SNSL254_A1164 NC_011080.1 1161260 1161823 D bacteriophage protein 1161260..1161823 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040325.1 CDS SNSL254_A1165 NC_011080.1 1161827 1162972 D bacteriophage protein 1161827..1162972 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040326.1 CDS SNSL254_A1166 NC_011080.1 1162985 1163428 D bacteriophage protein 1162985..1163428 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040327.1 CDS SNSL254_A1167 NC_011080.1 1163432 1163884 D bacteriophage protein 1163432..1163884 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040328.1 CDS SNSL254_A1168 NC_011080.1 1164062 1166071 D identified by match to protein family HMM PF01464; lytic transglycosylase, catalytic 1164062..1166071 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040329.1 CDS SNSL254_A1169 NC_011080.1 1166071 1166646 D bacteriophage protein 1166071..1166646 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040330.1 CDS SNSL254_A1170 NC_011080.1 1166646 1166948 D bacteriophage protein 1166646..1166948 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040331.1 CDS SNSL254_A1171 NC_011080.1 1166951 1168018 D bacteriophage protein 1166951..1168018 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040332.1 CDS SNSL254_A1172 NC_011080.1 1168183 1168347 D hypothetical protein 1168183..1168347 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040333.1 CDS SNSL254_A1173 NC_011080.1 1168431 1168886 R identified by glimmer; hypothetical protein complement(1168431..1168886) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040334.1 CDS SNSL254_A1174 NC_011080.1 1169005 1169757 D bacteriophage protein 1169005..1169757 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040335.1 CDS SNSL254_A1175 NC_011080.1 1169757 1170110 D bacteriophage protein 1169757..1170110 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040336.1 CDS SNSL254_A1176 NC_011080.1 1170111 1171310 D bacteriophage protein 1170111..1171310 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040337.1 CDS SNSL254_A1177 NC_011080.1 1171307 1171987 D bacteriophage protein 1171307..1171987 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083620.1 CDS SNSL254_A1178 NC_011080.1 1171987 1173519 D side tail fiber protein 1171987..1173519 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040339.1 CDS SNSL254_A1179 NC_011080.1 1173525 1174052 D identified by match to protein family HMM PF02413; tail fiber assembly protein 1173525..1174052 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040340.1 CDS SNSL254_A1180 NC_011080.1 1174341 1174466 R identified by glimmer; hypothetical protein complement(1174341..1174466) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040341.1 CDS SNSL254_A1181 NC_011080.1 1174519 1175157 D phage tail assembly protein 1174519..1175157 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040342.1 CDS SNSL254_A1182 NC_011080.1 1175267 1175659 D identified by match to protein family HMM PF07087; hypothetical protein 1175267..1175659 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040343.1 CDS SNSL254_A1183 NC_011080.1 1176525 1176944 R identified by glimmer; hypothetical protein complement(1176525..1176944) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040344.1 CDS SNSL254_A1184 NC_011080.1 1177884 1178387 R pathogenicity island-encoded protein A complement(1177884..1178387) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040345.1 CDS SNSL254_A1185 NC_011080.1 1178786 1179661 R identified by match to protein family HMM PF00805; secreted effector protein complement(1178786..1179661) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040346.1 CDS SNSL254_A1186 NC_011080.1 1180209 1180550 R identified by match to protein family HMM PF07824; chaperone protein SigE complement(1180209..1180550) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040347.1 CDS SNSL254_A1187 NC_011080.1 1180567 1182252 R identified by match to protein family HMM PF05925; inositol phosphate phosphatase SopB complement(1180567..1182252) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040348.1 CDS SNSL254_A1188 NC_011080.1 1182614 1182754 D hypothetical protein 1182614..1182754 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040349.1 CDS SNSL254_A1189 NC_011080.1 1182974 1184536 R identified by match to protein family HMM PF03577; peptidase family C69 complement(1182974..1184536) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040350.1 CDS SNSL254_A1190 NC_011080.1 1184616 1185980 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386; heavy metal sensor kinase subfamily complement(1184616..1185980) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040351.1 CDS SNSL254_A1191 NC_011080.1 1185973 1186653 R induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW complement(1185973..1186653) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040352.1 CDS uraH NC_011080.1 1186789 1187199 D identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; hydroxyisourate hydrolase 1186789..1187199 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040353.1 CDS hpaC NC_011080.1 1187532 1188044 R identified by match to protein family HMM PF01613; match to protein family HMM TIGR02296; 4-hydroxyphenylacetate 3-monooxygenase, reductase component complement(1187532..1188044) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040354.1 CDS hpaB NC_011080.1 1188062 1189624 R identified by match to protein family HMM PF03241; match to protein family HMM TIGR02310; 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component complement(1188062..1189624) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040355.1 CDS hpaR NC_011080.1 1189842 1190282 R identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337; homoprotocatechuate degradation operon regulator HpaR complement(1189842..1190282) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040356.1 CDS SNSL254_A1196 NC_011080.1 1190557 1191846 D identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303; match to protein family HMM TIGR02305; bifunctional 4-hydroxyphenylacetate degradation isomerase/decarboxylase 1190557..1191846 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040357.1 CDS hpaE NC_011080.1 1191843 1193309 D identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 1191843..1193309 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040358.1 CDS hpaD NC_011080.1 1193311 1194162 D identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1193311..1194162 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040359.1 CDS hpcD NC_011080.1 1194172 1194552 D identified by match to protein family HMM PF02962; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1194172..1194552 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040360.1 CDS hpaH NC_011080.1 1194697 1195500 D identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1194697..1195500 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040361.1 CDS hpaI NC_011080.1 1195511 1196302 D identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1195511..1196302 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040362.1 CDS hpaX NC_011080.1 1196374 1197750 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR02332; 4-hydroxyphenylacetate permease 1196374..1197750 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040363.1 CDS hpaA NC_011080.1 1197760 1198656 D identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM TIGR02297; 4-hydroxyphenylacetate catabolism regulatory protein HpaA 1197760..1198656 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040364.1 CDS SNSL254_A1204 NC_011080.1 1198670 1199608 D identified by match to protein family HMM PF00753; hypothetical protein 1198670..1199608 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040365.1 CDS SNSL254_A1205 NC_011080.1 1200826 1200981 D hypothetical protein 1200826..1200981 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040366.1 CDS SNSL254_A1206 NC_011080.1 1201032 1201337 R with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM complement(1201032..1201337) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040367.1 CDS SNSL254_A1207 NC_011080.1 1201337 1202257 R 'functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock'; curved DNA-binding protein CbpA complement(1201337..1202257) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040368.1 CDS SNSL254_A1208 NC_011080.1 1202493 1202855 D membrane protein suppressor for copper-sensitivity A 1202493..1202855 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040369.1 CDS SNSL254_A1209 NC_011080.1 1202904 1204790 D identified by match to protein family HMM PF02683; membrane protein suppressor for copper-sensitivity B 1202904..1204790 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040370.1 CDS SNSL254_A1210 NC_011080.1 1204787 1205410 D identified by match to protein family HMM PF01323; copper sensitivity supression protein 1204787..1205410 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040371.1 CDS SNSL254_A1211 NC_011080.1 1205400 1205906 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; suppressor for copper-sensitivity D 1205400..1205906 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040372.1 CDS SNSL254_A1212 NC_011080.1 1206039 1207280 D identified by match to protein family HMM PF00328; glucose-1-phosphatase/inositol phosphatase 1206039..1207280 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040373.1 CDS SNSL254_A1213 NC_011080.1 1207314 1207541 R hypothetical protein complement(1207314..1207541) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040374.1 CDS wrbA NC_011080.1 1207562 1208158 R stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA complement(1207562..1208158) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040375.1 CDS SNSL254_A1215 NC_011080.1 1208556 1208750 D hypothetical protein 1208556..1208750 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040376.1 CDS SNSL254_A1216 NC_011080.1 1208846 1209484 D identified by match to protein family HMM PF00440; match to protein family HMM PF08362; HTH-type transcriptional regulator RutR 1208846..1209484 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040377.1 CDS SNSL254_A1217 NC_011080.1 1209481 1209876 R identified by match to protein family HMM PF07007; hypothetical protein complement(1209481..1209876) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040378.1 CDS putA NC_011080.1 1209935 1213897 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; multifunctional functional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1209935..1213897) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040379.1 CDS putP NC_011080.1 1214319 1215827 D identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter 1214319..1215827 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083621.1 CDS SNSL254_A1221 NC_011080.1 1216720 1217508 D hypothetical protein 1216720..1217508 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040380.1 CDS SNSL254_A1222 NC_011080.1 1217614 1218495 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator complement(1217614..1218495) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040381.1 CDS SNSL254_A1223 NC_011080.1 1218781 1220277 R identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium-glucose/galactose cotransporter complement(1218781..1220277) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040382.1 CDS SNSL254_A1224 NC_011080.1 1220614 1221294 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1220614..1221294) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040383.1 CDS SNSL254_A1225 NC_011080.1 1221800 1222960 D identified by match to protein family HMM PF01344; match to protein family HMM PF07646; match to protein family HMM TIGR03547; N-acetylneuraminic acid mutarotase 1221800..1222960 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040384.1 CDS SNSL254_A1226 NC_011080.1 1223006 1223698 D identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 1223006..1223698 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040385.1 CDS SNSL254_A1227 NC_011080.1 1223981 1225261 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; sialic acid transporter 1223981..1225261 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040386.1 CDS SNSL254_A1228 NC_011080.1 1225275 1226378 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase YjhC 1225275..1226378 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040387.1 CDS SNSL254_A1231 NC_011080.1 1226689 1226853 R identified by glimmer; hypothetical protein complement(1226689..1226853) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040388.1 CDS SNSL254_A1230 NC_011080.1 1226852 1227790 D identified by match to protein family HMM PF02826; 2-hydroxyacid dehydrogenase 1226852..1227790 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040389.1 CDS SNSL254_A1232 NC_011080.1 1227875 1228612 D identified by match to protein family HMM PF02811; hydrolase 1227875..1228612 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040390.1 CDS SNSL254_A1233 NC_011080.1 1228636 1229190 D identified by match to protein family HMM PF06192; TorD family chaperone 1228636..1229190 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040391.1 CDS SNSL254_A1234 NC_011080.1 1229279 1229773 D identified by match to protein family HMM PF06496; hypothetical protein 1229279..1229773 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040392.1 CDS SNSL254_A1235 NC_011080.1 1229812 1230645 R identified by match to protein family HMM PF03783; curli production assembly/transport component CsgG complement(1229812..1230645) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040393.1 CDS SNSL254_A1236 NC_011080.1 1230672 1231088 R nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF complement(1230672..1231088) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040394.1 CDS SNSL254_A1237 NC_011080.1 1231115 1231510 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE complement(1231115..1231510) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040395.1 CDS csgD NC_011080.1 1231515 1232165 R activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD complement(1231515..1232165) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040396.1 CDS csgB NC_011080.1 1232920 1233375 D CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1232920..1233375 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040397.1 CDS SNSL254_A1240 NC_011080.1 1233417 1233872 D identified by match to protein family HMM PF07012; cryptic curlin major subunit 1233417..1233872 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040398.1 CDS csgC NC_011080.1 1233934 1234260 D involved in autoagglutination of curliated cells; not involved in production of curli fibers; autoagglutination protein 1233934..1234260 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040399.1 CDS SNSL254_A1242 NC_011080.1 1234391 1234711 D hypothetical protein 1234391..1234711 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040400.1 CDS SNSL254_A1243 NC_011080.1 1234799 1235338 D identified by match to protein family HMM PF01661; hypothetical protein 1234799..1235338 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040401.2 CDS SNSL254_A1244 NC_011080.1 1235274 1236761 D identified by match to protein family HMM PF00614; phopholipase D 1235274..1236761 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040402.1 CDS mdoC NC_011080.1 1236778 1237932 R required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein complement(1236778..1237932) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040403.1 CDS mdoG NC_011080.1 1238186 1239739 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1238186..1239739 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040404.1 CDS SNSL254_A1247 NC_011080.1 1239732 1242275 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1239732..1242275 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040405.1 CDS SNSL254_A1248 NC_011080.1 1242373 1242576 D identified by match to protein family HMM PF07119; hypothetical protein 1242373..1242576 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040406.1 CDS SNSL254_A1249 NC_011080.1 1242577 1242951 R hypothetical protein complement(1242577..1242951) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040407.1 CDS SNSL254_A1250 NC_011080.1 1243033 1244247 R Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG complement(1243033..1244247) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040408.1 CDS SNSL254_A1251 NC_011080.1 1244402 1245322 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(1244402..1245322) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040409.1 CDS SNSL254_A1252 NC_011080.1 1245542 1246594 D identified by match to protein family HMM PF00581; hypothetical protein 1245542..1246594 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040410.1 CDS SNSL254_A1253 NC_011080.1 1246646 1247221 R identified by match to protein family HMM PF04264; hypothetical protein complement(1246646..1247221) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040411.1 CDS SNSL254_A1254 NC_011080.1 1247218 1247796 R identified by match to protein family HMM PF01292; hypothetical protein complement(1247218..1247796) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040412.1 CDS SNSL254_A1255 NC_011080.1 1247801 1248004 D hypothetical protein 1247801..1248004 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040413.1 CDS SNSL254_A1256 NC_011080.1 1248053 1248166 R hypothetical protein complement(1248053..1248166) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040414.1 CDS solA NC_011080.1 1248207 1249325 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase complement(1248207..1249325) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040415.1 CDS bssS NC_011080.1 1249438 1249692 R 'BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing'; biofilm formation regulatory protein BssS complement(1249438..1249692) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040416.1 CDS dinI NC_011080.1 1249982 1250227 R identified by match to protein family HMM PF06183; DNA damage-inducible protein I complement(1249982..1250227) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040417.1 CDS pyrC NC_011080.1 1250301 1251347 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1250301..1251347) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040418.1 CDS SNSL254_A1261 NC_011080.1 1251451 1252011 R identified by match to protein family HMM PF07273; hypothetical protein complement(1251451..1252011) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040419.1 CDS grxB NC_011080.1 1252136 1252783 R cofactor involved in the reduction of disulfides; glutaredoxin complement(1252136..1252783) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040420.1 CDS SNSL254_A1263 NC_011080.1 1252847 1254055 R Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH complement(1252847..1254055) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040421.1 CDS SNSL254_A1264 NC_011080.1 1254292 1254876 D identified by match to protein family HMM PF00583; ribosomal-protein-S5-alanine N-acetyltransferase 1254292..1254876 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040422.1 CDS SNSL254_A1265 NC_011080.1 1254912 1255559 D identified by match to protein family HMM PF04337; hypothetical protein 1254912..1255559 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040423.1 CDS SNSL254_A1266 NC_011080.1 1255561 1256484 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; hypothetical protein 1255561..1256484 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040424.1 CDS mviN NC_011080.1 1256749 1258323 D identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 1256749..1258323 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040425.1 CDS SNSL254_A1268 NC_011080.1 1258405 1258797 R identified by match to protein family HMM PF05130; flagella synthesis protein FlgN complement(1258405..1258797) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040426.1 CDS SNSL254_A1269 NC_011080.1 1258832 1259125 R regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM complement(1258832..1259125) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040427.1 CDS flgA NC_011080.1 1259217 1259876 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1259217..1259876) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040428.1 CDS flgB NC_011080.1 1260033 1260449 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 1260033..1260449 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040429.1 CDS flgC NC_011080.1 1260453 1260857 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1260453..1260857 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040430.1 CDS flgD NC_011080.1 1260869 1261567 D 'acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production'; flagellar basal body rod modification protein 1260869..1261567 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040431.1 CDS flgE NC_011080.1 1261594 1262805 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1261594..1262805 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040432.1 CDS flgF NC_011080.1 1262826 1263581 D 'FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod'; flagellar basal body rod protein FlgF 1262826..1263581 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040433.1 CDS flgG NC_011080.1 1263595 1264377 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1263595..1264377 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040434.1 CDS flgH NC_011080.1 1264464 1265129 D 'part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod'; flagellar basal body L-ring protein 1264464..1265129 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040435.1 CDS flgI NC_011080.1 1265141 1266238 D 'part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum'; flagellar basal body P-ring protein 1265141..1266238 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040436.1 CDS flgJ NC_011080.1 1266238 1267188 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1266238..1267188 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040437.1 CDS flgK NC_011080.1 1267253 1268914 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1267253..1268914 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040438.1 CDS flgL NC_011080.1 1268929 1269882 D 'with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes'; flagellar hook-associated protein FlgL 1268929..1269882 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040439.1 CDS rne NC_011080.1 1270138 1273344 R 'bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase'; ribonuclease E complement(1270138..1273344) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040440.1 CDS SNSL254_A1284 NC_011080.1 1273918 1274877 D 'catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA'; 23S rRNA pseudouridylate synthase C 1273918..1274877 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040441.1 CDS SNSL254_A1285 NC_011080.1 1275015 1275776 D hypothetical protein 1275015..1275776 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040442.1 CDS SNSL254_A1286 NC_011080.1 1275980 1276204 D hypothetical protein 1275980..1276204 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040443.1 CDS maf NC_011080.1 1276275 1276859 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1276275..1276859) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040444.1 CDS SNSL254_A1289 NC_011080.1 1277057 1277578 D identified by match to protein family HMM PF02620; hypothetical protein 1277057..1277578 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040445.1 CDS SNSL254_A1291 NC_011080.1 1277564 1277968 R identified by glimmer; hypothetical protein complement(1277564..1277968) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040446.1 CDS plsX NC_011080.1 1277937 1279016 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1277937..1279016 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040447.1 CDS fabH NC_011080.1 1279096 1280049 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1279096..1280049 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040448.1 CDS fabD NC_011080.1 1280065 1280994 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1280065..1280994 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040449.1 CDS fabG NC_011080.1 1281007 1281741 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1281007..1281741 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040450.1 CDS acpP NC_011080.1 1281897 1282133 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1281897..1282133 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040451.1 CDS fabF NC_011080.1 1282219 1283460 D 'FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP'; 3-oxoacyl-ACP synthase 1282219..1283460 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040452.1 CDS pabC NC_011080.1 1283584 1284393 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1283584..1284393 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040453.1 CDS SNSL254_A1298 NC_011080.1 1284396 1285418 D identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 1284396..1285418 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040454.1 CDS tmk NC_011080.1 1285408 1286049 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1285408..1286049 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040455.1 CDS SNSL254_A1300 NC_011080.1 1286046 1287050 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1286046..1287050 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040456.1 CDS SNSL254_A1301 NC_011080.1 1287061 1287858 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; metallodependent hydrolase 1287061..1287858 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040457.1 CDS ptsG NC_011080.1 1288153 1289586 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 1288153..1289586 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040458.1 CDS SNSL254_A1303 NC_011080.1 1289671 1291845 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferric-rhodotorulic acid outer membrane transporter complement(1289671..1291845) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040459.1 CDS SNSL254_A1304 NC_011080.1 1292169 1292546 D identified by match to protein family HMM PF01230; purine nucleoside phosphoramidase 1292169..1292546 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040460.1 CDS SNSL254_A1305 NC_011080.1 1292549 1292923 D identified by match to protein family HMM PF07233; outer membrane lipoprotein 1292549..1292923 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040461.1 CDS SNSL254_A1306 NC_011080.1 1292937 1293575 D identified by match to protein family HMM TIGR02722; hypothetical protein 1292937..1293575 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040462.1 CDS thiK NC_011080.1 1293556 1294380 D catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1293556..1294380 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040463.1 CDS nagZ NC_011080.1 1294391 1295416 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1294391..1295416 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040464.1 CDS SNSL254_A1309 NC_011080.1 1295441 1295983 D identified by match to protein family HMM PF05728; hypothetical protein 1295441..1295983 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040465.1 CDS ndh NC_011080.1 1296236 1297540 D identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992; NADH dehydrogenase 1296236..1297540 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040466.1 CDS SNSL254_A1311 NC_011080.1 1297719 1298258 D identified by match to protein family HMM PF05433; hypothetical protein 1297719..1298258 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040467.1 CDS SNSL254_A1312 NC_011080.1 1298332 1298967 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1298332..1298967) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040468.1 CDS SNSL254_A1313 NC_011080.1 1299209 1299466 D identified by match to protein family HMM PF07338; hypothetical protein 1299209..1299466 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040469.1 CDS SNSL254_A1314 NC_011080.1 1299563 1300528 R identified by match to protein family HMM PF01476; match to protein family HMM PF03734; LysM/ErfK/YbiS/YcfS/YnhG family protein complement(1299563..1300528) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040470.1 CDS mfd NC_011080.1 1300676 1304122 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(1300676..1304122) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040471.1 CDS SNSL254_A1316 NC_011080.1 1304128 1304286 D identified by glimmer; hypothetical protein 1304128..1304286 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040472.1 CDS lolC NC_011080.1 1304460 1305659 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1304460..1305659 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040473.1 CDS lolD NC_011080.1 1305652 1306353 D 'outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone'; lipoprotein transporter ATP-binding subunit 1305652..1306353 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040474.1 CDS lolE NC_011080.1 1306353 1307597 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1306353..1307597 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040475.1 CDS nagK NC_011080.1 1307626 1308537 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1307626..1308537 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040476.1 CDS SNSL254_A1321 NC_011080.1 1308556 1309377 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1308556..1309377 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040477.1 CDS potD NC_011080.1 1309459 1310505 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein complement(1309459..1310505) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040478.1 CDS potC NC_011080.1 1310530 1311309 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter permease complement(1310530..1311309) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040479.1 CDS SNSL254_A1324 NC_011080.1 1311412 1311534 R identified by glimmer; hypothetical protein complement(1311412..1311534) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040480.1 CDS sifA NC_011080.1 1311625 1312635 R translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein complement(1311625..1312635) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040481.1 CDS potB NC_011080.1 1312964 1313827 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter permease complement(1312964..1313827) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040482.1 CDS potA NC_011080.1 1313811 1314947 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase complement(1313811..1314947) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040483.1 CDS pepT NC_011080.1 1315198 1316427 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1315198..1316427 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040484.1 CDS SNSL254_A1329 NC_011080.1 1316431 1317765 D identified by match to protein family HMM PF07719; hypothetical protein 1316431..1317765 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040485.1 CDS SNSL254_A1330 NC_011080.1 1317805 1318926 R identified by match to protein family HMM PF08007; cupin family protein complement(1317805..1318926) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040486.1 CDS SNSL254_A1331 NC_011080.1 1319007 1320470 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08918; sensor protein PhoQ complement(1319007..1320470) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040487.1 CDS SNSL254_A1332 NC_011080.1 1320470 1321144 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP complement(1320470..1321144) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040488.1 CDS purB NC_011080.1 1321268 1322638 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1321268..1322638) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040489.1 CDS SNSL254_A1334 NC_011080.1 1322642 1323283 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1322642..1323283) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040490.1 CDS mnmA NC_011080.1 1323370 1324476 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1323370..1324476) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040491.1 CDS SNSL254_A1336 NC_011080.1 1324530 1324991 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(1324530..1324991) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040492.1 CDS SNSL254_A1337 NC_011080.1 1325003 1325332 R hypothetical protein complement(1325003..1325332) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040493.2 CDS SNSL254_A1338 NC_011080.1 1325329 1325994 R identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase E complement(1325329..1325994) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040494.1 CDS icd NC_011080.1 1326166 1327416 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1326166..1327416 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040495.1 CDS SNSL254_A1340 NC_011080.1 1327864 1328988 D hypothetical protein 1327864..1328988 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040496.1 CDS SNSL254_A1341 NC_011080.1 1329020 1329178 R identified by glimmer; hypothetical protein complement(1329020..1329178) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040497.1 CDS SNSL254_A1343 NC_011080.1 1329979 1330767 R envelope protein EnvF complement(1329979..1330767) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040498.1 CDS SNSL254_A1346 NC_011080.1 1331686 1332207 R identified by match to protein family HMM PF00652; envelope protein EnvE complement(1331686..1332207) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040499.1 CDS SNSL254_A1347 NC_011080.1 1332876 1333004 R identified by glimmer; hypothetical protein complement(1332876..1333004) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040500.1 CDS SNSL254_A1348 NC_011080.1 1333534 1333662 D hypothetical protein 1333534..1333662 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040501.1 CDS SNSL254_A1349 NC_011080.1 1334042 1334599 D identified by match to protein family HMM PF06316; virulence membrane protein PagC 1334042..1334599 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040502.1 CDS SNSL254_A1352 NC_011080.1 1335821 1336165 R PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor complement(1335821..1336165) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040503.1 CDS SNSL254_A1353 NC_011080.1 1336543 1336668 D hypothetical protein 1336543..1336668 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040504.1 CDS SNSL254_A1354 NC_011080.1 1336800 1336973 R hypothetical protein complement(1336800..1336973) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040505.1 CDS SNSL254_A1355 NC_011080.1 1337290 1337760 D identified by match to protein family HMM PF00011; heat shock protein 1337290..1337760 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040506.1 CDS SNSL254_A1356 NC_011080.1 1338099 1339142 D hypothetical protein 1338099..1339142 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040507.1 CDS SNSL254_A1357 NC_011080.1 1339225 1339755 R identified by match to protein family HMM PF01292; nickel-dependent hydrogenase, B-type cytochrome subunit complement(1339225..1339755) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040508.1 CDS SNSL254_A1358 NC_011080.1 1339904 1340218 R hypothetical protein complement(1339904..1340218) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040509.1 CDS SNSL254_A1359 NC_011080.1 1340309 1340467 R identified by glimmer; hypothetical protein complement(1340309..1340467) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040510.1 CDS SNSL254_A1360 NC_011080.1 1340613 1340756 R identified by glimmer; hypothetical protein complement(1340613..1340756) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040511.1 CDS SNSL254_A1361 NC_011080.1 1340899 1342533 D identified by match to protein family HMM PF00496; nickel ABC transporter substrate-binding protein 1340899..1342533 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040512.1 CDS SNSL254_A1362 NC_011080.1 1342533 1343507 D identified by match to protein family HMM PF00528; dipeptide/oligopeptide/nickel ABC transporter permease 1342533..1343507 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040513.1 CDS SNSL254_A1363 NC_011080.1 1343497 1344309 D identified by match to protein family HMM PF00528; nickel/di-oligopepetide ABC transporter permease 1343497..1344309 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040514.1 CDS SNSL254_A1364 NC_011080.1 1344303 1345100 D identified by match to protein family HMM PF00005; nickel/di-oligopepetide ABC transporter ATP-binding protein 1344303..1345100 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040515.1 CDS SNSL254_A1365 NC_011080.1 1345094 1345684 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1345094..1345684 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040516.1 CDS SNSL254_A1366 NC_011080.1 1345766 1346899 R identified by match to protein family HMM PF00924; mechanosensitive ion channel protein MscS complement(1345766..1346899) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040517.1 CDS SNSL254_A1369 NC_011080.1 1347613 1348263 D identified by match to protein family HMM PF09223; hypothetical protein 1347613..1348263 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040518.2 CDS SNSL254_A1370 NC_011080.1 1348372 1349160 D streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1348372..1349160 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040519.1 CDS SNSL254_A1371 NC_011080.1 1349251 1349898 D identified by match to protein family HMM PF00196; regulatory protein 1349251..1349898 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040520.1 CDS SNSL254_A1372 NC_011080.1 1349967 1350815 D identified by match to protein family HMM PF00376; transcriptional regulator 1349967..1350815 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040521.2 CDS SNSL254_A1373 NC_011080.1 1351070 1351318 R hypothetical protein complement(1351070..1351318) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040522.1 CDS SNSL254_A1374 NC_011080.1 1351646 1352191 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1351646..1352191 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040523.1 CDS SNSL254_A1375 NC_011080.1 1352388 1353026 D identified by match to protein family HMM PF01810; leucine export protein LeuE 1352388..1353026 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040524.1 CDS SNSL254_A1376 NC_011080.1 1353199 1353561 D identified by match to protein family HMM PF09313; hypothetical protein 1353199..1353561 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040525.1 CDS SNSL254_A1377 NC_011080.1 1353564 1353746 D identified by match to protein family HMM PF08956; hypothetical protein 1353564..1353746 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040526.1 CDS SNSL254_A1378 NC_011080.1 1353976 1354617 D hypothetical protein 1353976..1354617 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040527.1 CDS SNSL254_A1379 NC_011080.1 1354738 1354923 D hypothetical protein 1354738..1354923 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040528.1 CDS SNSL254_A1381 NC_011080.1 1354931 1355179 D identified by match to protein family HMM PF04226; hypothetical protein 1354931..1355179 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040529.1 CDS SNSL254_A1382 NC_011080.1 1355241 1355357 R hypothetical protein complement(1355241..1355357) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040530.1 CDS SNSL254_A1383 NC_011080.1 1355612 1355863 D identified by match to protein family HMM PF03891; hemolysin 1355612..1355863 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040531.1 CDS SNSL254_A1384 NC_011080.1 1355932 1356243 D hypothetical protein 1355932..1356243 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040532.1 CDS SNSL254_A1385 NC_011080.1 1356229 1356576 R identified by match to protein family HMM PF04343; hypothetical protein complement(1356229..1356576) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040533.1 CDS SNSL254_A1386 NC_011080.1 1356591 1356728 D identified by glimmer; hypothetical protein 1356591..1356728 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040534.1 CDS SNSL254_A1387 NC_011080.1 1356695 1357879 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00896; inner membrane transport protein YeaN complement(1356695..1357879) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083622.1 CDS SNSL254_A1388 NC_011080.1 1357980 1358774 D AraC family transcriptional regulator 1357980..1358774 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040535.1 CDS SNSL254_A1390 NC_011080.1 1358754 1359200 R identified by match to protein family HMM PF04284; hypothetical protein complement(1358754..1359200) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040536.1 CDS SNSL254_A1389 NC_011080.1 1359187 1359339 D hypothetical protein 1359187..1359339 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040537.1 CDS SNSL254_A1391 NC_011080.1 1359658 1360185 R identified by match to protein family HMM PF04073; prolyl-tRNA synthetase complement(1359658..1360185) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040538.1 CDS SNSL254_A1392 NC_011080.1 1360226 1361719 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain-containing protein complement(1360226..1361719) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040539.1 CDS SNSL254_A1393 NC_011080.1 1362019 1362237 D identified by glimmer; hypothetical protein 1362019..1362237 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040540.1 CDS SNSL254_A1394 NC_011080.1 1362390 1363676 R identified by match to protein family HMM PF04285; hypothetical protein complement(1362390..1363676) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040541.1 CDS SNSL254_A1395 NC_011080.1 1363677 1363796 D identified by glimmer; hypothetical protein 1363677..1363796 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040542.1 CDS SNSL254_A1396 NC_011080.1 1363799 1365733 R identified by match to protein family HMM PF06798; match to protein family HMM PF08298; serine protein kinase PrkA complement(1363799..1365733) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040543.2 CDS SNSL254_A1397 NC_011080.1 1366159 1366905 D identified by match to protein family HMM PF06629; MltA-interacting protein 1366159..1366905 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040544.1 CDS SNSL254_A1398 NC_011080.1 1367195 1368391 D chondroitin sulfate/heparin utilization regulation protein 1367195..1368391 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040545.1 CDS SNSL254_A1399 NC_011080.1 1368497 1369345 D identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 1368497..1369345 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040546.1 CDS SNSL254_A1400 NC_011080.1 1369444 1370328 R identified by match to protein family HMM PF01263; aldose 1-epimerase complement(1369444..1370328) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040547.1 CDS gapA NC_011080.1 1370663 1371658 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase complement(1370663..1371658) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040548.1 CDS msrB NC_011080.1 1372000 1372413 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1372000..1372413 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040549.1 CDS SNSL254_A1403 NC_011080.1 1372455 1372733 D identified by match to protein family HMM PF07023; general negative regulator of transcription subunit 1 1372455..1372733 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040550.1 CDS SNSL254_A1404 NC_011080.1 1373085 1373741 R catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase complement(1373085..1373741) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040551.2 CDS ansA NC_011080.1 1373768 1374784 R converts asparagine to aspartate and ammonia; asparaginase complement(1373768..1374784) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040552.1 CDS sppA NC_011080.1 1374880 1376736 R SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 complement(1374880..1376736) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040553.1 CDS SNSL254_A1407 NC_011080.1 1376910 1377461 D identified by match to protein family HMM PF00881; hypothetical protein 1376910..1377461 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040554.1 CDS selD NC_011080.1 1377579 1378622 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1377579..1378622 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040555.1 CDS topB NC_011080.1 1378627 1380576 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1378627..1380576 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040556.1 CDS gdhA NC_011080.1 1380606 1381949 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1380606..1381949) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040557.1 CDS SNSL254_A1411 NC_011080.1 1382188 1382463 D identified by match to protein family HMM PF07383; hypothetical protein 1382188..1382463 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040558.1 CDS SNSL254_A1412 NC_011080.1 1382423 1382839 R identified by match to protein family HMM PF00293; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase complement(1382423..1382839) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040559.1 CDS xth NC_011080.1 1382912 1383718 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1382912..1383718) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040560.1 CDS SNSL254_A1414 NC_011080.1 1383853 1384032 D hypothetical protein 1383853..1384032 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040561.1 CDS SNSL254_A1415 NC_011080.1 1384164 1385390 D catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1384164..1385390 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040562.1 CDS astA NC_011080.1 1385381 1386415 D identified by match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244; arginine succinyltransferase 1385381..1386415 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040563.1 CDS astD NC_011080.1 1386412 1387890 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1386412..1387890 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040564.1 CDS astB NC_011080.1 1387887 1389230 D 'catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation'; succinylarginine dihydrolase 1387887..1389230 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040565.1 CDS astE NC_011080.1 1389223 1390191 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1389223..1390191 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040566.1 CDS SNSL254_A1420 NC_011080.1 1390330 1390443 D identified by glimmer; hypothetical protein 1390330..1390443 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040567.1 CDS spy NC_011080.1 1390527 1391012 D periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1390527..1391012 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040568.1 CDS SNSL254_A1422 NC_011080.1 1391087 1391968 R 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease complement(1391087..1391968) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040569.1 CDS nadE NC_011080.1 1392089 1392916 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1392089..1392916) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040570.1 CDS SNSL254_A1423 NC_011080.1 1392869 1393003 D identified by glimmer; hypothetical protein 1392869..1393003 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040571.1 CDS osmE NC_011080.1 1393135 1393476 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1393135..1393476 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040572.1 CDS chbB NC_011080.1 1393777 1394097 D 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1393777..1394097 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040573.1 CDS chbC NC_011080.1 1394180 1395538 D 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1394180..1395538 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040574.1 CDS SNSL254_A1428 NC_011080.1 1395589 1395936 D 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1395589..1395936 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040575.1 CDS SNSL254_A1429 NC_011080.1 1395947 1396789 D represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1395947..1396789 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040576.1 CDS SNSL254_A1430 NC_011080.1 1396914 1398269 D identified by match to protein family HMM PF02056; 6-phospho-beta-glucosidase 1396914..1398269 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040577.1 CDS SNSL254_A1431 NC_011080.1 1398282 1399040 D identified by match to protein family HMM PF04794; hypothetical protein 1398282..1399040 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040578.1 CDS katE NC_011080.1 1399084 1401336 R Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II complement(1399084..1401336) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040579.1 CDS SNSL254_A1433 NC_011080.1 1401701 1401943 D cell division modulator 1401701..1401943 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040580.1 CDS SNSL254_A1434 NC_011080.1 1402045 1403436 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family complement(1402045..1403436) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040581.1 CDS SNSL254_A1435 NC_011080.1 1403573 1404172 R identified by match to protein family HMM PF04307; hypothetical protein complement(1403573..1404172) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040582.1 CDS SNSL254_A1436 NC_011080.1 1404310 1404978 R 'YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate'; 2-deoxyglucose-6-phosphatase complement(1404310..1404978) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040583.1 CDS SNSL254_A1437 NC_011080.1 1405127 1405663 D hypothetical protein 1405127..1405663 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040584.1 CDS SNSL254_A1438 NC_011080.1 1405706 1406566 R identified by match to protein family HMM PF01636; match to protein family HMM PF03881; fructosamine kinase complement(1405706..1406566) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040585.1 CDS SNSL254_A1439 NC_011080.1 1406673 1406963 R hypothetical protein complement(1406673..1406963) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040586.1 CDS pfkB NC_011080.1 1407060 1407992 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 6-phosphofructokinase complement(1407060..1407992) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040587.1 CDS SNSL254_A1441 NC_011080.1 1408314 1409039 D identified by match to protein family HMM PF04338; hypothetical protein 1408314..1409039 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040588.1 CDS SNSL254_A1442 NC_011080.1 1409088 1410047 R hypothetical protein complement(1409088..1410047) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040589.1 CDS SNSL254_A1443 NC_011080.1 1410190 1411356 D identified by match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 1410190..1411356 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040590.1 CDS thrS NC_011080.1 1411616 1413544 D 'catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; threonyl-tRNA synthetase 1411616..1413544 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040591.1 CDS infC NC_011080.1 1413656 1414090 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1413656..1414090 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040592.1 CDS rpmI NC_011080.1 1414186 1414383 D identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1414186..1414383 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040593.1 CDS rplT NC_011080.1 1414434 1414790 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1414434..1414790 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040594.1 CDS pheS NC_011080.1 1415092 1416075 D 'catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily'; phenylalanyl-tRNA synthetase subunit alpha 1415092..1416075 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040595.1 CDS pheT NC_011080.1 1416091 1418478 D 'catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily'; phenylalanyl-tRNA synthetase subunit beta 1416091..1418478 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040596.1 CDS ihfA NC_011080.1 1418483 1418782 D 'This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control'; integration host factor subunit alpha 1418483..1418782 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040597.1 CDS SNSL254_A1451 NC_011080.1 1418985 1419965 D with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1418985..1419965 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040598.1 CDS btuE NC_011080.1 1420057 1420608 D similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; glutathione peroxidase 1420057..1420608 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040599.1 CDS SNSL254_A1453 NC_011080.1 1420620 1421357 D ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1420620..1421357 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040600.1 CDS SNSL254_A1454 NC_011080.1 1421434 1421898 D identified by match to protein family HMM PF00877; lipoprotein nlpC 1421434..1421898 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040601.1 CDS SNSL254_A1455 NC_011080.1 1422212 1422925 D hypothetical protein 1422212..1422925 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040602.1 CDS SNSL254_A1456 NC_011080.1 1422987 1424429 D identified by match to protein family HMM PF02696; hypothetical protein 1422987..1424429 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040603.1 CDS SNSL254_A1457 NC_011080.1 1424465 1424647 R hypothetical protein complement(1424465..1424647) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040604.1 CDS aroH NC_011080.1 1424813 1425859 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1424813..1425859) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040605.1 CDS SNSL254_A1459 NC_011080.1 1426015 1426848 R identified by match to protein family HMM PF03618; hypothetical protein complement(1426015..1426848) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040606.1 CDS ppsA NC_011080.1 1427185 1429563 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1427185..1429563 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040607.1 CDS SNSL254_A1462 NC_011080.1 1429605 1431245 R acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase complement(1429605..1431245) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040608.1 CDS SNSL254_A1463 NC_011080.1 1431335 1431628 R ferredoxin-like protein complement(1431335..1431628) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040609.1 CDS SNSL254_A1464 NC_011080.1 1431625 1432911 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; hypothetical protein complement(1431625..1432911) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040610.1 CDS SNSL254_A1465 NC_011080.1 1432968 1433903 R May play a role in a redox process; electron transfer flavoprotein subunit YdiR complement(1432968..1433903) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040611.1 CDS ydiQ NC_011080.1 1433925 1434689 R 'YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain'; electron transfer flavoprotein YdiQ complement(1433925..1434689) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040612.1 CDS SNSL254_A1467 NC_011080.1 1435152 1436042 D identified by match to protein family HMM PF00165; match to protein family HMM PF07883; araC family transcriptional regulator 1435152..1436042 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040613.1 CDS SNSL254_A1468 NC_011080.1 1436118 1437269 R may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase complement(1436118..1437269) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040614.1 CDS SNSL254_A1469 NC_011080.1 1437283 1438878 R identified by match to protein family HMM PF01144; propionate CoA-transferase complement(1437283..1438878) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040615.1 CDS aroD NC_011080.1 1439032 1439763 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(1439032..1439763) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040616.1 CDS SNSL254_A1471 NC_011080.1 1439835 1440701 R YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase complement(1439835..1440701) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040617.1 CDS SNSL254_A1472 NC_011080.1 1440768 1442003 R identified by match to protein family HMM PF07690; major facilitator family protein complement(1440768..1442003) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040618.1 CDS SNSL254_A1473 NC_011080.1 1442370 1443578 R identified by match to protein family HMM PF07690; inner membrane transport protein YdiM complement(1442370..1443578) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040619.1 CDS SNSL254_A1474 NC_011080.1 1443719 1444078 R identified by match to protein family HMM PF08965; hypothetical protein complement(1443719..1444078) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040620.1 CDS SNSL254_A1476 NC_011080.1 1444536 1445654 R 'YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function'; inner membrane protein complement(1444536..1445654) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040621.1 CDS SNSL254_A1477 NC_011080.1 1445919 1448975 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; FAD linked oxidase domain-containing protein 1445919..1448975 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040622.1 CDS SNSL254_A1478 NC_011080.1 1448972 1449382 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 1448972..1449382 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040623.1 CDS SNSL254_A1481 NC_011080.1 1449957 1451303 R identified by match to protein family HMM PF00375; dicarboxylate/amino acid:cation (Na+ or H+) symporter family transporter complement(1449957..1451303) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040624.1 CDS sufA NC_011080.1 1451730 1452098 D functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1451730..1452098 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040625.1 CDS sufB NC_011080.1 1452107 1453594 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1452107..1453594 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040626.1 CDS sufC NC_011080.1 1453611 1454357 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1453611..1454357 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040627.1 CDS sufD NC_011080.1 1454332 1455603 D with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1454332..1455603 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040628.1 CDS SNSL254_A1486 NC_011080.1 1455600 1456820 D catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1455600..1456820 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040629.1 CDS SNSL254_A1487 NC_011080.1 1456833 1457249 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1456833..1457249 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040630.1 CDS SNSL254_A1488 NC_011080.1 1457404 1458405 D identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1457404..1458405 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040631.1 CDS SNSL254_A1489 NC_011080.1 1458472 1458711 R identified by match to protein family HMM PF04728; hypothetical protein complement(1458472..1458711) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040632.1 CDS lpp NC_011080.1 1458794 1459030 R identified by match to protein family HMM PF04728; major outer membrane lipoprotein complement(1458794..1459030) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040633.1 CDS pykF NC_011080.1 1459341 1460753 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1459341..1460753) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040634.1 CDS SNSL254_A1492 NC_011080.1 1461155 1462498 R identified by match to protein family HMM PF00324; amino acid transporter complement(1461155..1462498) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083623.1 CDS SNSL254_A1493 NC_011080.1 1462520 1463413 R hydrolase complement(1462520..1463413) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040635.1 CDS SNSL254_A1494 NC_011080.1 1463472 1464209 R identified by match to protein family HMM PF07090; hypothetical protein complement(1463472..1464209) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040636.1 CDS SNSL254_A1495 NC_011080.1 1464221 1465447 R identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; regulatory protein complement(1464221..1465447) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040637.1 CDS SNSL254_A1496 NC_011080.1 1465770 1468832 R identified by match to protein family HMM PF01568; match to protein family HMM PF04879; tetrathionate reductase complex subunit A complement(1465770..1468832) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040638.1 CDS SNSL254_A1497 NC_011080.1 1468825 1469847 R identified by match to protein family HMM PF03916; tetrathionate reductase complex subunit C complement(1468825..1469847) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040639.1 CDS SNSL254_A1498 NC_011080.1 1469848 1470582 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; tetrathionate reductase subunit B complement(1469848..1470582) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040640.1 CDS SNSL254_A1499 NC_011080.1 1470794 1472542 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor-kinase 1470794..1472542 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040641.1 CDS SNSL254_A1500 NC_011080.1 1472499 1473137 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; response regulator 1472499..1473137 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040642.1 CDS SNSL254_A1501 NC_011080.1 1473235 1473447 D hypothetical protein 1473235..1473447 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040643.1 CDS SNSL254_A1502 NC_011080.1 1473569 1474528 R identified by match to protein family HMM PF04463; match to protein family HMM PF08349; hypothetical protein complement(1473569..1474528) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040644.1 CDS SNSL254_A1503 NC_011080.1 1474701 1475429 R identified by match to protein family HMM PF00376; merR family transcriptional regulator complement(1474701..1475429) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040645.1 CDS SNSL254_A1504 NC_011080.1 1475608 1476246 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; hypothetical protein complement(1475608..1476246) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040646.1 CDS SNSL254_A1505 NC_011080.1 1476277 1479039 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; secretion system regulator:Sensor component complement(1476277..1479039) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040647.1 CDS SNSL254_A1506 NC_011080.1 1479843 1481336 D identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; type III secretion outer membrane pore, YscC/HrcC family 1479843..1481336 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040648.1 CDS SNSL254_A1507 NC_011080.1 1481329 1482528 D identified by match to protein family HMM TIGR02500; type III secretion apparatus protein YscD/HrpQ family 1481329..1482528 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040649.1 CDS SNSL254_A1508 NC_011080.1 1482545 1482778 D identified by match to protein family HMM TIGR02501; YseE family type III secretion system protein 1482545..1482778 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040650.1 CDS SNSL254_A1509 NC_011080.1 1483374 1483964 D identified by match to protein family HMM PF03433; secretion system effector protein SseB 1483374..1483964 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040651.1 CDS SNSL254_A1510 NC_011080.1 1483919 1484434 D identified by match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1483919..1484434 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040652.1 CDS SNSL254_A1511 NC_011080.1 1484437 1485891 D identified by match to protein family HMM PF04888; translocation machinery component 1484437..1485891 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040653.2 CDS SNSL254_A1512 NC_011080.1 1485907 1486494 D translocation machinery protein 1485907..1486494 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040654.1 CDS SNSL254_A1513 NC_011080.1 1486497 1486913 D secreted effector protein 1486497..1486913 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040655.1 CDS SNSL254_A1514 NC_011080.1 1486965 1487399 D identified by match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1486965..1487399 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040656.1 CDS SNSL254_A1515 NC_011080.1 1487415 1488197 D secreted effector protein 1487415..1488197 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040657.1 CDS SNSL254_A1516 NC_011080.1 1488194 1488883 D secreted effector protein 1488194..1488883 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040658.1 CDS eprI NC_011080.1 1488977 1489192 D identified by match to protein family HMM PF09392; match to protein family HMM TIGR02105; type III secretion apparatus needle protein 1488977..1489192 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040659.1 CDS SNSL254_A1518 NC_011080.1 1489170 1489460 D identified by match to protein family HMM TIGR02498; SsaH family type III secretion system protein 1489170..1489460 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040660.1 CDS SNSL254_A1519 NC_011080.1 1489457 1489720 D identified by match to protein family HMM PF09525; match to protein family HMM TIGR02497; type III secretion system apparatus protein 1489457..1489720 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040661.1 CDS SNSL254_A1520 NC_011080.1 1489717 1490466 D identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein YscJ/HrcJ family 1489717..1490466 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040662.1 CDS SNSL254_A1521 NC_011080.1 1490484 1491032 D hypothetical protein 1490484..1491032 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040663.1 CDS SNSL254_A1522 NC_011080.1 1491029 1491703 D identified by match to protein family HMM TIGR02499; type III secretion apparatus protein HrpE/YscL family 1491029..1491703 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040664.1 CDS SNSL254_A1523 NC_011080.1 1491693 1492685 D identified by match to protein family HMM PF07018; match to protein family HMM TIGR02511; secretion system apparatus protein SsaL 1491693..1492685 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040665.1 CDS SNSL254_A1524 NC_011080.1 1492743 1493111 D secretion system apparatus protein SsaM 1492743..1493111 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040666.1 CDS SNSL254_A1525 NC_011080.1 1493096 1495141 D with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1493096..1495141 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040667.1 CDS SNSL254_A1526 NC_011080.1 1495131 1496432 D identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546; type III secretion system ATPase 1495131..1496432 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040668.1 CDS SNSL254_A1527 NC_011080.1 1496435 1496812 D secretion system apparatus protein SsaO 1496435..1496812 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040669.1 CDS SNSL254_A1528 NC_011080.1 1496826 1497167 D secretion system apparatus protein SsaP 1496826..1497167 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040670.1 CDS epaO NC_011080.1 1497148 1498116 D identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551; type III secretion system protein 1497148..1498116 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040671.1 CDS epaP NC_011080.1 1498184 1498831 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1498184..1498831 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040672.1 CDS epaR NC_011080.1 1499095 1499874 D identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT 1499095..1499874 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040673.1 CDS SNSL254_A1532 NC_011080.1 1499871 1500929 D 'member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli'; secretion system apparatus protein SsaU 1499871..1500929 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040674.1 CDS SNSL254_A1535 NC_011080.1 1501402 1502775 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(1501402..1502775) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040675.1 CDS ribE NC_011080.1 1502992 1503633 D 'catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine'; riboflavin synthase subunit alpha 1502992..1503633 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040676.1 CDS cfa NC_011080.1 1503675 1504823 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(1503675..1504823) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040677.1 CDS SNSL254_A1538 NC_011080.1 1505113 1506318 R uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC complement(1505113..1506318) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040678.1 CDS SNSL254_A1539 NC_011080.1 1506431 1507363 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 1506431..1507363 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040679.1 CDS purR NC_011080.1 1507360 1508385 R 'binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers'; DNA-binding transcriptional repressor PurR complement(1507360..1508385) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040680.1 CDS SNSL254_A1541 NC_011080.1 1508853 1509434 R SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase complement(1508853..1509434) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040681.1 CDS SNSL254_A1542 NC_011080.1 1509561 1510382 R identified by match to protein family HMM PF00877; NlpC/P60 family protein complement(1509561..1510382) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040682.1 CDS SNSL254_A1543 NC_011080.1 1510717 1511064 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; hypothetical protein 1510717..1511064 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040683.1 CDS rnt NC_011080.1 1511142 1511789 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1511142..1511789) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040684.1 CDS gloA NC_011080.1 1511890 1512297 R Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I complement(1511890..1512297) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040685.1 CDS SNSL254_A1546 NC_011080.1 1512366 1513463 R FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase complement(1512366..1513463) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040686.1 CDS SNSL254_A1547 NC_011080.1 1513522 1514121 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1513522..1514121) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040687.1 CDS SNSL254_A1548 NC_011080.1 1514311 1514463 D hypothetical protein 1514311..1514463 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040688.1 CDS SNSL254_A1549 NC_011080.1 1514514 1515410 D identified by match to protein family HMM PF00248; oxidoreductase YdhF 1514514..1515410 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040689.1 CDS sodC NC_011080.1 1515490 1516011 D SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1515490..1516011 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040690.1 CDS SNSL254_A1551 NC_011080.1 1515987 1518026 R identified by match to protein family HMM PF04632; fusaric acid resistance domain-containing protein complement(1515987..1518026) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040691.1 CDS SNSL254_A1552 NC_011080.1 1518026 1518886 R identified by match to protein family HMM PF00529; auxiliary transport protein membrane fusion protein (MFP) family complement(1518026..1518886) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040692.1 CDS SNSL254_A1553 NC_011080.1 1518889 1519080 R identified by match to protein family HMM PF07869; hypothetical protein complement(1518889..1519080) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040693.1 CDS SNSL254_A1554 NC_011080.1 1519320 1519760 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1519320..1519760 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040694.1 CDS SNSL254_A1555 NC_011080.1 1519808 1520275 R identified by match to protein family HMM PF05433; outer membrane lipoprotein pcp complement(1519808..1520275) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040695.1 CDS anmK NC_011080.1 1520547 1521668 D 'catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling'; anhydro-N-acetylmuramic acid kinase 1520547..1521668 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040696.1 CDS SNSL254_A1557 NC_011080.1 1521756 1522085 D MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1521756..1522085 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040697.1 CDS pdxH NC_011080.1 1522144 1522800 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1522144..1522800 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040698.1 CDS tyrS NC_011080.1 1522927 1524201 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1522927..1524201 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040699.1 CDS SNSL254_A1560 NC_011080.1 1524261 1525121 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1524261..1525121 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040700.1 CDS gst NC_011080.1 1525180 1525785 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathionine S-transferase complement(1525180..1525785) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040701.1 CDS tppB NC_011080.1 1525890 1527395 R mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; tripeptide transporter permease complement(1525890..1527395) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040702.1 CDS nth NC_011080.1 1527997 1528632 R 'DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines'; endonuclease III complement(1527997..1528632) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040703.1 CDS SNSL254_A1564 NC_011080.1 1528632 1529324 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(1528632..1529324) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040704.1 CDS SNSL254_A1565 NC_011080.1 1529327 1529947 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(1529327..1529947) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040705.1 CDS rnfD NC_011080.1 1529951 1531009 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD complement(1529951..1531009) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040706.1 CDS SNSL254_A1567 NC_011080.1 1531010 1533217 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(1531010..1533217) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040707.1 CDS rnfB NC_011080.1 1533210 1533788 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(1533210..1533788) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040708.1 CDS rnfA NC_011080.1 1533788 1534369 R identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943; Na(+)-translocating NADH-quinone reductase subunit E complement(1533788..1534369) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040709.1 CDS SNSL254_A1570 NC_011080.1 1534446 1534919 R hypothetical protein complement(1534446..1534919) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040710.1 CDS SNSL254_A1571 NC_011080.1 1534975 1535190 R 'YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes'; oriC-binding nucleoid-associated protein complement(1534975..1535190) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040711.1 CDS SNSL254_A1572 NC_011080.1 1535821 1536861 D identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase 1535821..1536861 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040712.1 CDS add NC_011080.1 1536936 1537937 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(1536936..1537937) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040713.1 CDS SNSL254_A1575 NC_011080.1 1538643 1540151 R identified by match to protein family HMM PF06097; hypothetical protein complement(1538643..1540151) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040714.1 CDS manA NC_011080.1 1540254 1541429 R identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase complement(1540254..1541429) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040715.1 CDS SNSL254_A1577 NC_011080.1 1541629 1543275 D identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic 1541629..1543275 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040716.1 CDS fumC NC_011080.1 1543443 1544846 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1543443..1544846 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040717.1 CDS tus NC_011080.1 1544843 1545772 R binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein complement(1544843..1545772) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040718.1 CDS SNSL254_A1580 NC_011080.1 1545848 1547149 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein RstB complement(1545848..1547149) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040719.1 CDS SNSL254_A1581 NC_011080.1 1547260 1548960 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family complement(1547260..1548960) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040720.1 CDS SNSL254_A1582 NC_011080.1 1549119 1550270 R identified by match to protein family HMM PF00267; outer membrane protein N complement(1549119..1550270) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040721.1 CDS SNSL254_A1583 NC_011080.1 1550535 1550663 R hypothetical protein complement(1550535..1550663) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040722.1 CDS SNSL254_A1584 NC_011080.1 1550750 1551481 R response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA complement(1550750..1551481) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040723.1 CDS SNSL254_A1585 NC_011080.1 1551608 1551943 D identified by match to protein family HMM PF06942; GlpM family protein 1551608..1551943 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040724.1 CDS SNSL254_A1586 NC_011080.1 1552005 1553387 R identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/ornithine antiporter complement(1552005..1553387) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040725.1 CDS SNSL254_A1587 NC_011080.1 1553686 1554630 R identified by match to protein family HMM PF07338; hypothetical protein complement(1553686..1554630) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040726.1 CDS pntA NC_011080.1 1555157 1556686 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1555157..1556686 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040727.1 CDS pntB NC_011080.1 1556697 1558085 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1556697..1558085 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040728.1 CDS tqsA NC_011080.1 1558260 1559294 R transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; transporter complement(1558260..1559294) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040729.1 CDS SNSL254_A1591 NC_011080.1 1559463 1559600 D hypothetical protein 1559463..1559600 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040730.1 CDS SNSL254_A1592 NC_011080.1 1559712 1560074 D 'with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS'; multidrug efflux system protein MdtJ 1559712..1560074 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040731.1 CDS SNSL254_A1593 NC_011080.1 1560061 1560390 D 'with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS'; multidrug efflux system protein MdtI 1560061..1560390 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040732.1 CDS SNSL254_A1594 NC_011080.1 1560430 1561251 R identified by match to protein family HMM PF00089; peptidase S1 and S6 chymotrypsin/Hap complement(1560430..1561251) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040733.1 CDS SNSL254_A1595 NC_011080.1 1561351 1561470 R identified by glimmer; hypothetical protein complement(1561351..1561470) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040734.1 CDS SNSL254_A1596 NC_011080.1 1561520 1561768 R required for growth and survival under moderately acid conditions; acid shock protein complement(1561520..1561768) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040735.1 CDS SNSL254_A1597 NC_011080.1 1562163 1563416 R identified by match to protein family HMM PF07690; inner membrane transport protein YnfM complement(1562163..1563416) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040736.1 CDS SNSL254_A1598 NC_011080.1 1563536 1564435 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1563536..1564435 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040737.1 CDS mic NC_011080.1 1564563 1565783 D identified by match to protein family HMM PF00480; transcriptional regulator Mic 1564563..1565783 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040738.1 CDS bioD2 NC_011080.1 1565909 1566604 D 'DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium'; dithiobiotin synthetase 1565909..1566604 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040739.1 CDS SNSL254_A1601 NC_011080.1 1566560 1567849 R identified by match to protein family HMM PF00654; voltage-gated ClC-type chloride channel ClcB complement(1566560..1567849) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040740.1 CDS SNSL254_A1602 NC_011080.1 1567985 1569133 R identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; choline transport ATP-binding protein opuBA complement(1567985..1569133) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040741.1 CDS SNSL254_A1603 NC_011080.1 1569133 1569780 R identified by match to protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein complement(1569133..1569780) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040742.1 CDS SNSL254_A1604 NC_011080.1 1569790 1570692 R identified by match to protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein complement(1569790..1570692) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040743.1 CDS SNSL254_A1605 NC_011080.1 1570721 1571431 R identified by match to protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein complement(1570721..1571431) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040744.1 CDS SNSL254_A1606 NC_011080.1 1571736 1572350 R 'binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane'; twin-argninine leader-binding protein DmsD complement(1571736..1572350) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040745.1 CDS dmsC NC_011080.1 1572393 1573250 R identified by match to protein family HMM PF04976; dmso reductase anchor subunit complement(1572393..1573250) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040746.1 CDS dmsB_2 NC_011080.1 1573252 1573869 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B complement(1573252..1573869) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040747.1 CDS SNSL254_A1609 NC_011080.1 1573880 1576315 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A complement(1573880..1576315) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040748.1 CDS SNSL254_A1610 NC_011080.1 1576414 1578852 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A complement(1576414..1578852) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040749.1 CDS SNSL254_A1611 NC_011080.1 1579009 1579314 R identified by match to protein family HMM PF06649; hypothetical protein complement(1579009..1579314) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040750.1 CDS SNSL254_A1612 NC_011080.1 1579421 1580131 D identified by match to protein family HMM PF06788; hypothetical protein 1579421..1580131 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040751.1 CDS speG NC_011080.1 1580172 1580732 R identified by match to protein family HMM PF00583; diamine N-acetyltransferase complement(1580172..1580732) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040752.1 CDS SNSL254_A1614 NC_011080.1 1580768 1581109 R identified by match to protein family HMM PF06932; hypothetical protein complement(1580768..1581109) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040753.1 CDS SNSL254_A1615 NC_011080.1 1581261 1581587 D identified by match to protein family HMM PF02694; hypothetical protein 1581261..1581587 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040754.1 CDS SNSL254_A1616 NC_011080.1 1581709 1582923 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; starvation sensing protein RspA 1581709..1582923 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040755.1 CDS SNSL254_A1617 NC_011080.1 1582934 1583953 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; dehydrogenase 1582934..1583953 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040756.1 CDS SNSL254_A1618 NC_011080.1 1584046 1585386 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; inner membrane metabolite transport protein YdfJ 1584046..1585386 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040758.1 CDS SNSL254_A1619 NC_011080.1 1585530 1586996 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 1585530..1586996 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040759.1 CDS SNSL254_A1621 NC_011080.1 1587063 1587266 R identified by match to protein family HMM TIGR03318; selenium-binding protein YdfZ complement(1587063..1587266) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040760.1 CDS SNSL254_A1622 NC_011080.1 1587447 1588133 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(1587447..1588133) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040761.1 CDS SNSL254_A1623 NC_011080.1 1588263 1589009 R 'NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine'; 3-hydroxy acid dehydrogenase complement(1588263..1589009) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040762.1 CDS SNSL254_A1624 NC_011080.1 1589148 1591190 D identified by match to protein family HMM PF01432; dipeptidyl carboxypeptidase II 1589148..1591190 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040763.1 CDS SNSL254_A1625 NC_011080.1 1591535 1591717 D hypothetical protein 1591535..1591717 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040764.1 CDS SNSL254_A1626 NC_011080.1 1591837 1592364 R identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A complement(1591837..1592364) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040765.1 CDS SNSL254_A1627 NC_011080.1 1592791 1593183 D identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein 1592791..1593183 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040766.1 CDS SNSL254_A1628 NC_011080.1 1593530 1593652 R hypothetical protein complement(1593530..1593652) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040767.1 CDS SNSL254_A1629 NC_011080.1 1593873 1595060 R YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; MFS-type transporter YdeE complement(1593873..1595060) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040768.1 CDS SNSL254_A1630 NC_011080.1 1595291 1596190 D identified by match to protein family HMM PF00892; O-acetylserine/cysteine export protein 1595291..1596190 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040769.1 CDS SNSL254_A1631 NC_011080.1 1596309 1596524 R hypothetical protein complement(1596309..1596524) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040770.1 CDS SNSL254_A1632 NC_011080.1 1596553 1596936 R 'transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF'; DNA-binding transcriptional activator MarA complement(1596553..1596936) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040771.1 CDS marR NC_011080.1 1596956 1597390 R Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR complement(1596956..1597390) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040772.1 CDS SNSL254_A1634 NC_011080.1 1597649 1598314 D 'protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function'; multiple drug resistance protein MarC 1597649..1598314 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040773.1 CDS SNSL254_A1635 NC_011080.1 1598361 1599551 R identified by match to protein family HMM PF07690; sugar efflux transporter complement(1598361..1599551) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040774.1 CDS SNSL254_A1636 NC_011080.1 1599667 1600539 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain complement(1599667..1600539) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040775.1 CDS SNSL254_A1637 NC_011080.1 1600642 1602030 D in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 1600642..1602030 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040776.1 CDS SNSL254_A1638 NC_011080.1 1602103 1603029 D catalyzes the formation of glutamate from glutamine; glutaminase 1602103..1603029 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040777.1 CDS SNSL254_A1639 NC_011080.1 1603029 1603388 D hypothetical protein 1603029..1603388 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083624.1 CDS SNSL254_A1640 NC_011080.1 1603611 1604558 D hypothetical protein 1603611..1604558 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040778.1 CDS SNSL254_A1641 NC_011080.1 1604614 1605141 R hypothetical protein complement(1604614..1605141) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040779.1 CDS SNSL254_A1642 NC_011080.1 1605873 1606991 D identified by match to protein family HMM PF00267; outer membrane protein N 1605873..1606991 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040780.1 CDS hypA NC_011080.1 1607121 1607462 R identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA complement(1607121..1607462) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040781.1 CDS SNSL254_A1644 NC_011080.1 1607475 1608362 R dehydrogenase protein complement(1607475..1608362) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040782.1 CDS SNSL254_A1645 NC_011080.1 1608350 1609411 R identified by match to protein family HMM PF00301; match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF2 complement(1608350..1609411) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040783.1 CDS SNSL254_A1646 NC_011080.1 1609429 1609839 R identified by match to protein family HMM PF07449; hydrogenase-1 operon protein HyaE2 complement(1609429..1609839) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040784.1 CDS hypC NC_011080.1 1609836 1610135 R identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF complement(1609836..1610135) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040785.1 CDS hybD NC_011080.1 1610135 1610743 R identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; hydrogenase expression/formation protein complement(1610135..1610743) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040786.1 CDS cybH NC_011080.1 1610749 1611492 R identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; Ni/Fe-hydrogenase, B-type cytochrome subunit complement(1610749..1611492) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040787.1 CDS SNSL254_A1650 NC_011080.1 1611443 1613245 R identified by match to protein family HMM PF00374; [Ni/Fe] hydrogenase large subunit complement(1611443..1613245) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040788.1 CDS SNSL254_A1651 NC_011080.1 1613248 1614351 R identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; uptake hydrogenase small subunit complement(1613248..1614351) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040789.1 CDS SNSL254_A1652 NC_011080.1 1614779 1615870 D identified by match to protein family HMM PF02275; choloylglycine hydrolase 1614779..1615870 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040790.1 CDS SNSL254_A1653 NC_011080.1 1615916 1616707 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; regulatory protein 1615916..1616707 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040791.1 CDS SNSL254_A1654 NC_011080.1 1616766 1617791 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-type alcohol dehydrogenase complement(1616766..1617791) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040792.1 CDS SNSL254_A1655 NC_011080.1 1617766 1619052 R identified by match to protein family HMM PF07690; membrane transport protein complement(1617766..1619052) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040793.2 CDS pqaA NC_011080.1 1619229 1620785 R PhoPQ-regulated protein PqaA complement(1619229..1620785) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040794.1 CDS SNSL254_A1657 NC_011080.1 1620855 1622096 R identified by match to protein family HMM PF07690; major facilitator superfamily protein complement(1620855..1622096) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040795.1 CDS SNSL254_A1658 NC_011080.1 1622086 1623594 R identified by match to protein family HMM PF01494; hypothetical protein complement(1622086..1623594) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040796.1 CDS SNSL254_A1659 NC_011080.1 1623639 1624127 D identified by match to protein family HMM PF01047; marR family transcriptional regulator 1623639..1624127 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040797.1 CDS SNSL254_A1660 NC_011080.1 1624320 1625399 D S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 1624320..1625399 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040798.1 CDS SNSL254_A1661 NC_011080.1 1625451 1625567 R endoribonuclease L-PSP complement(1625451..1625567) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040799.1 CDS SNSL254_A1663 NC_011080.1 1626280 1626792 D identified by match to protein family HMM PF07377; hypothetical protein 1626280..1626792 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040800.1 CDS SNSL254_A1664 NC_011080.1 1626888 1627076 R hypothetical protein complement(1626888..1627076) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040801.1 CDS SNSL254_A1665 NC_011080.1 1627118 1627234 R identified by glimmer; hypothetical protein complement(1627118..1627234) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040802.1 CDS SNSL254_A1666 NC_011080.1 1627375 1627497 D LysR family transcriptional regulator 1627375..1627497 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040803.1 CDS SNSL254_A1669 NC_011080.1 1628465 1629472 D identified by match to protein family HMM PF00532; HTH-type transcriptional regulator GalR 1628465..1629472 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040804.1 CDS nhaC NC_011080.1 1629616 1631067 D identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC 1629616..1631067 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040805.1 CDS SNSL254_A1671 NC_011080.1 1631080 1632282 D identified by match to protein family HMM PF00155; class I and II aminotransferase 1631080..1632282 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040806.1 CDS glgX NC_011080.1 1632395 1634470 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; glycogen debranching protein GlgX complement(1632395..1634470) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040807.1 CDS treY NC_011080.1 1634527 1637055 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401; malto-oligosyltrehalose synthase complement(1634527..1637055) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040808.1 CDS treZ NC_011080.1 1637052 1638836 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402; malto-oligosyltrehalose trehalohydrolase complement(1637052..1638836) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040809.1 CDS SNSL254_A1675 NC_011080.1 1638965 1639750 R identified by match to protein family HMM PF06884; hypothetical protein complement(1638965..1639750) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040810.1 CDS hdeB NC_011080.1 1639893 1640222 R acid-resistance protein complement(1639893..1640222) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040811.1 CDS SNSL254_A1677 NC_011080.1 1640572 1641003 R identified by match to protein family HMM PF02566; match to protein family HMM TIGR03562; peroxiredoxin OsmC complement(1640572..1641003) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040812.1 CDS SNSL254_A1678 NC_011080.1 1641515 1641730 D biofilm-dependent modulation protein 1641515..1641730 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040813.1 CDS SNSL254_A1679 NC_011080.1 1641866 1642000 R identified by glimmer; hypothetical protein complement(1641866..1642000) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040814.1 CDS SNSL254_A1680 NC_011080.1 1642145 1643842 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1642145..1643842 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040815.1 CDS SNSL254_A1681 NC_011080.1 1644128 1645138 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1644128..1645138 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040816.1 CDS SNSL254_A1682 NC_011080.1 1645229 1645885 R 'nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase'; formate dehydrogenase-N subunit gamma complement(1645229..1645885) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040817.1 CDS fdnH NC_011080.1 1645878 1646756 R identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase, nitrate-inducible, iron-sulfur subunit complement(1645878..1646756) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040818.1 CDS SNSL254_A1686 NC_011080.1 1650101 1650982 D identified by match to protein family HMM PF00892; hypothetical protein 1650101..1650982 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040819.1 CDS SNSL254_A1687 NC_011080.1 1651507 1652595 D identified by match to protein family HMM PF00267; outer membrane porin protein LC 1651507..1652595 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040820.1 CDS SNSL254_A1688 NC_011080.1 1652679 1653119 D identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating protein 1652679..1653119 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040821.1 CDS SNSL254_A1689 NC_011080.1 1653144 1654631 R identified by match to protein family HMM PF07690; methyl viologen resistance protein SmvA complement(1653144..1654631) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040822.1 CDS SNSL254_A1690 NC_011080.1 1654749 1655327 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1654749..1655327 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040823.1 CDS SNSL254_A1691 NC_011080.1 1655541 1656929 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 2 1655541..1656929 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040824.1 CDS SNSL254_A1692 NC_011080.1 1657021 1660761 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase subunit alpha 1657021..1660761 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040825.1 CDS narY NC_011080.1 1660758 1662302 D identified by match to protein family HMM TIGR01660; nitrate reductase 2 subunit beta 1660758..1662302 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040826.1 CDS narW NC_011080.1 1662302 1662997 D identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 2 1662302..1662997 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040827.1 CDS narV NC_011080.1 1662994 1663674 D identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase 2 subunit gamma 1662994..1663674 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040828.1 CDS SNSL254_A1696 NC_011080.1 1663779 1664672 D identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; hypothetical protein 1663779..1664672 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040829.1 CDS SNSL254_A1697 NC_011080.1 1664708 1665553 R identified by match to protein family HMM PF00797; N-acetyltransferase superfamily protein complement(1664708..1665553) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040830.1 CDS SNSL254_A1698 NC_011080.1 1665837 1666469 R hypothetical protein complement(1665837..1666469) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040831.1 CDS SNSL254_A1699 NC_011080.1 1666982 1668475 D identified by match to protein family HMM PF00324; L-asparagine permease 1666982..1668475 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040832.1 CDS SNSL254_A1700 NC_011080.1 1668552 1668740 R identified by match to protein family HMM PF06004; hypothetical protein complement(1668552..1668740) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040833.1 CDS SNSL254_A1701 NC_011080.1 1668918 1669979 R hypothetical protein complement(1668918..1669979) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040834.1 CDS SNSL254_A1702 NC_011080.1 1670243 1672363 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor yncD 1670243..1672363 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040835.1 CDS SNSL254_A1703 NC_011080.1 1672430 1673095 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; DNA-binding transcriptional regulator complement(1672430..1673095) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040836.1 CDS SNSL254_A1704 NC_011080.1 1673429 1674466 R identified by match to protein family HMM PF00107; NADP-dependent oxidoreductase yncb complement(1673429..1674466) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040837.1 CDS yncA NC_011080.1 1674691 1675206 D identified by match to protein family HMM PF00583; phosphinothricin acetyltransferase 1674691..1675206 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040838.1 CDS SNSL254_A1706 NC_011080.1 1675206 1675655 D identified by match to protein family HMM PF04657; hypothetical protein 1675206..1675655 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040839.1 CDS SNSL254_A1707 NC_011080.1 1675660 1675893 R hypothetical protein complement(1675660..1675893) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040840.1 CDS SNSL254_A1708 NC_011080.1 1676117 1677442 D ssrAB activated gene 1676117..1677442 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040841.1 CDS SNSL254_A1709 NC_011080.1 1677447 1680428 D identified by match to protein family HMM PF07520; virulence protein SrfB 1677447..1680428 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040842.1 CDS SNSL254_A1710 NC_011080.1 1680425 1682569 D virulence effector protein 1680425..1682569 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040843.1 CDS SNSL254_A1711 NC_011080.1 1682614 1682796 R hypothetical protein complement(1682614..1682796) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040844.1 CDS ydcW NC_011080.1 1683186 1684631 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(1683186..1684631) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040845.1 CDS SNSL254_A1713 NC_011080.1 1684746 1686170 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; classes I and II superfamily aminotransferase complement(1684746..1686170) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040846.1 CDS SNSL254_A1714 NC_011080.1 1686306 1687076 R identified by match to protein family HMM PF01427; hypothetical protein complement(1686306..1687076) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040847.1 CDS SNSL254_A1715 NC_011080.1 1687598 1687996 R hypothetical protein complement(1687598..1687996) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040848.1 CDS sifB NC_011080.1 1688533 1689483 D translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1688533..1689483 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040849.1 CDS SNSL254_A1717 NC_011080.1 1689757 1689987 D hypothetical protein 1689757..1689987 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040850.1 CDS SNSL254_A1718 NC_011080.1 1689988 1691952 R identified by match to protein family HMM PF01136; peptidase, U32 family complement(1689988..1691952) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040851.1 CDS SNSL254_A1719 NC_011080.1 1692031 1692567 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; XRE family transcriptional regulator complement(1692031..1692567) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040852.1 CDS SNSL254_A1720 NC_011080.1 1692659 1693837 D identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843; benzoate transporter 1692659..1693837 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040853.1 CDS SNSL254_A1721 NC_011080.1 1693891 1694559 R lipoprotein complement(1693891..1694559) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040854.1 CDS tehB NC_011080.1 1694715 1695311 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(1694715..1695311) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040855.1 CDS SNSL254_A1723 NC_011080.1 1695298 1696311 R identified by match to protein family HMM PF03595; match to protein family HMM TIGR00816; potassium-tellurite ethidium and proflavin transporter complement(1695298..1696311) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040856.1 CDS SNSL254_A1724 NC_011080.1 1696418 1697398 D hypothetical protein 1696418..1697398 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040857.1 CDS SNSL254_A1725 NC_011080.1 1697395 1697934 R identified by match to protein family HMM PF00583; ribosomal-protein-L7/L12-serine acetyltransferase complement(1697395..1697934) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040858.1 CDS SNSL254_A1726 NC_011080.1 1698151 1699269 D identified by match to protein family HMM PF01546; match to protein family HMM PF05343; sgc region protein SgcX 1698151..1699269 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040859.1 CDS SNSL254_A1727 NC_011080.1 1699266 1699547 D identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB 1699266..1699547 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040860.1 CDS SNSL254_A1728 NC_011080.1 1699558 1700871 D identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system transporter subunit IIC 1699558..1700871 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040861.1 CDS SNSL254_A1729 NC_011080.1 1700885 1701691 D identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259; hypothetical protein 1700885..1701691 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040862.1 CDS SNSL254_A1730 NC_011080.1 1701823 1702260 D identified by match to protein family HMM PF00359; PTS system sugar-specific transporter subunit EIIA 2 1701823..1702260 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040863.1 CDS SNSL254_A1731 NC_011080.1 1702272 1702904 D identified by match to protein family HMM PF00834; epimerase 1702272..1702904 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040864.1 CDS SNSL254_A1732 NC_011080.1 1702914 1703711 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; regulatory protein 1702914..1703711 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040865.1 CDS SNSL254_A1733 NC_011080.1 1703711 1704148 D identified by match to protein family HMM PF00583; aminoglycoside 6'-N-acetyltransferase Iz 1703711..1704148 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040866.1 CDS SNSL254_A1734 NC_011080.1 1704195 1705397 R identified by match to protein family HMM PF01070; match to protein family HMM PF01180; L-lactate oxidase complement(1704195..1705397) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040867.1 CDS SNSL254_A1735 NC_011080.1 1705409 1705975 R identified by match to protein family HMM PF04264; hypothetical protein complement(1705409..1705975) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040868.1 CDS mdoD NC_011080.1 1706180 1707799 R involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D complement(1706180..1707799) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040869.1 CDS SNSL254_A1737 NC_011080.1 1708055 1709563 R identified by match to protein family HMM PF00135; carboxylesterase complement(1708055..1709563) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040870.1 CDS SNSL254_A1738 NC_011080.1 1709612 1710955 R identified by match to protein family HMM PF07063; hypothetical protein complement(1709612..1710955) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040871.1 CDS SNSL254_A1739 NC_011080.1 1711248 1712171 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1711248..1712171 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040872.1 CDS SNSL254_A1740 NC_011080.1 1712232 1713857 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein III complement(1712232..1713857) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040873.1 CDS SNSL254_A1741 NC_011080.1 1714026 1715144 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(1714026..1715144) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040874.1 CDS SNSL254_A1742 NC_011080.1 1715176 1715451 R identified by match to protein family HMM PF02583; hypothetical protein complement(1715176..1715451) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040875.1 CDS SNSL254_A1743 NC_011080.1 1716214 1716339 R identified by glimmer; hypothetical protein complement(1716214..1716339) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040876.1 CDS SNSL254_A1744 NC_011080.1 1716359 1716514 D identified by glimmer; hypothetical protein 1716359..1716514 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040877.1 CDS SNSL254_A1745 NC_011080.1 1716504 1717220 R hypothetical protein complement(1716504..1717220) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040878.1 CDS SNSL254_A1746 NC_011080.1 1717404 1717517 R identified by glimmer; hypothetical protein complement(1717404..1717517) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040879.1 CDS SNSL254_A1747 NC_011080.1 1717646 1718872 D secreted effector protein 1717646..1718872 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040880.1 CDS SNSL254_A1748 NC_011080.1 1718993 1719337 R identified by match to protein family HMM PF06961; cyanate transport complement(1718993..1719337) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040881.1 CDS SNSL254_A1749 NC_011080.1 1720244 1721005 D identified by match to protein family HMM PF00497; periplasmic binding protein 1720244..1721005 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040882.1 CDS SNSL254_A1750 NC_011080.1 1721012 1721659 D ABC transporter permease 1721012..1721659 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040883.1 CDS SNSL254_A1751 NC_011080.1 1721684 1722415 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1721684..1722415 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040884.1 CDS SNSL254_A1752 NC_011080.1 1722412 1723092 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; ABC transporter membrane protein 1722412..1723092 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040885.1 CDS SNSL254_A1753 NC_011080.1 1723229 1724779 D hypothetical protein 1723229..1724779 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040886.1 CDS SNSL254_A1754 NC_011080.1 1725195 1725905 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; type 12 methyltransferase 1725195..1725905 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040887.1 CDS SNSL254_A1756 NC_011080.1 1726176 1726706 R B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 complement(1726176..1726706) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040888.1 CDS SNSL254_A1757 NC_011080.1 1726823 1727623 R identified by match to protein family HMM PF02698; hypothetical protein complement(1726823..1727623) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040889.1 CDS hrpA NC_011080.1 1727687 1731589 R 'involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain'; ATP-dependent RNA helicase HrpA complement(1727687..1731589) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040890.1 CDS SNSL254_A1759 NC_011080.1 1731790 1732395 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1731790..1732395 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040891.1 CDS SNSL254_A1760 NC_011080.1 1732392 1732841 R identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating protein complement(1732392..1732841) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040892.1 CDS SNSL254_A1761 NC_011080.1 1732984 1733307 R identified by match to protein family HMM PF07027; hypothetical protein complement(1732984..1733307) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040893.1 CDS SNSL254_A1762 NC_011080.1 1733315 1733506 R hypothetical protein complement(1733315..1733506) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040894.1 CDS SNSL254_A1763 NC_011080.1 1733506 1736142 R hypothetical protein complement(1733506..1736142) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040895.1 CDS SNSL254_A1764 NC_011080.1 1736382 1737371 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 1736382..1737371 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040896.1 CDS SNSL254_A1765 NC_011080.1 1737482 1737892 D identified by match to protein family HMM PF03724; heat-inducible protein 1737482..1737892 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040897.1 CDS SNSL254_A1766 NC_011080.1 1737936 1738202 R hypothetical protein complement(1737936..1738202) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040898.1 CDS SNSL254_A1767 NC_011080.1 1738241 1738372 R hypothetical protein complement(1738241..1738372) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040899.1 CDS nifJ NC_011080.1 1738478 1742002 D identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 1738478..1742002 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040900.1 CDS SNSL254_A1771 NC_011080.1 1742484 1742918 D identified by match to protein family HMM PF00582; universal stress protein F 1742484..1742918 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040901.1 CDS SNSL254_A1772 NC_011080.1 1742971 1743309 R identified by match to protein family HMM PF00893; multidrug transporter EmrE complement(1742971..1743309) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040902.1 CDS SNSL254_A1773 NC_011080.1 1743302 1743496 R identified by glimmer; hypothetical protein complement(1743302..1743496) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040903.1 CDS SNSL254_A1774 NC_011080.1 1743664 1744599 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1743664..1744599 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040904.1 CDS SNSL254_A1775 NC_011080.1 1744643 1746016 R 'exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA'; ATP-dependent RNA helicase DbpA complement(1744643..1746016) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040905.1 CDS zntB NC_011080.1 1746503 1747486 R identified by match to protein family HMM PF01544; zinc transporter complement(1746503..1747486) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040906.1 CDS SNSL254_A1778 NC_011080.1 1747632 1748744 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(1747632..1748744) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040907.1 CDS SNSL254_A1779 NC_011080.1 1748797 1748958 R hypothetical protein complement(1748797..1748958) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040908.1 CDS SNSL254_A1780 NC_011080.1 1749037 1749216 R identified by glimmer; hypothetical protein complement(1749037..1749216) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040909.1 CDS SNSL254_A1781 NC_011080.1 1749197 1749760 R identified by match to protein family HMM PF01713; Smr protein/MutS2 complement(1749197..1749760) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040910.1 CDS SNSL254_A1782 NC_011080.1 1750018 1750533 D identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1750018..1750533 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040911.1 CDS fnr NC_011080.1 1750729 1751481 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1750729..1751481 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040912.1 CDS uspE NC_011080.1 1751632 1752579 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1751632..1752579 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040913.1 CDS SNSL254_A1785 NC_011080.1 1752634 1752888 R hypothetical protein complement(1752634..1752888) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040914.1 CDS SNSL254_A1786 NC_011080.1 1753127 1754158 D identified by match to protein family HMM PF00924; MscS family inner membrane protein YnaI 1753127..1754158 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040915.1 CDS SNSL254_A1787 NC_011080.1 1754244 1754846 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; Cro/CI family transcriptional regulator complement(1754244..1754846) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040916.1 CDS SNSL254_A1788 NC_011080.1 1754890 1755576 D identified by match to protein family HMM PF03483; B3/4 domain-containing protein 1754890..1755576 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040917.1 CDS SNSL254_A1789 NC_011080.1 1755604 1755942 D hypothetical protein 1755604..1755942 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040918.1 CDS SNSL254_A1790 NC_011080.1 1756048 1756566 R thiol peroxidase complement(1756048..1756566) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040919.1 CDS SNSL254_A1791 NC_011080.1 1756701 1757525 R hypothetical protein complement(1756701..1757525) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040920.1 CDS SNSL254_A1792 NC_011080.1 1757552 1759534 R hypothetical protein complement(1757552..1759534) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040921.2 CDS SNSL254_A1793 NC_011080.1 1759609 1760454 R hypothetical protein complement(1759609..1760454) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040922.1 CDS SNSL254_A1794 NC_011080.1 1760754 1761605 D identified by match to protein family HMM PF00165; match to protein family HMM PF06445; regulatory protein 1760754..1761605 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040923.1 CDS SNSL254_A1795 NC_011080.1 1761997 1763106 D hypothetical protein 1761997..1763106 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040924.2 CDS SNSL254_A1796 NC_011080.1 1763320 1763556 R identified by match to protein family HMM PF06004; outer membrane lipoprotein complement(1763320..1763556) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040925.1 CDS SNSL254_A1797 NC_011080.1 1763685 1764275 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1763685..1764275) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040926.1 CDS SNSL254_A1798 NC_011080.1 1764353 1765066 D identified by match to protein family HMM PF00106; oxidoreductase 1764353..1765066 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040927.1 CDS SNSL254_A1799 NC_011080.1 1765157 1766026 R identified by match to protein family HMM PF00248; 2,5-diketo-D-gluconate reductase A complement(1765157..1766026) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040928.1 CDS SNSL254_A1800 NC_011080.1 1766217 1766342 R identified by glimmer; hypothetical protein complement(1766217..1766342) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040929.1 CDS SNSL254_A1801 NC_011080.1 1766303 1767208 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; regulatory protein LysR complement(1766303..1767208) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040930.1 CDS SNSL254_A1802 NC_011080.1 1767327 1768256 D identified by match to protein family HMM PF05368; isoflavone reductase 1767327..1768256 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040931.1 CDS SNSL254_A1803 NC_011080.1 1768353 1769966 R identified by match to protein family HMM PF00496; periplasmic murein peptide-binding protein complement(1768353..1769966) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040932.1 CDS SNSL254_A1804 NC_011080.1 1770156 1770884 D identified by match to protein family HMM PF00246; murein peptide amidase A 1770156..1770884 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040933.1 CDS SNSL254_A1805 NC_011080.1 1770859 1771824 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing domain-containing protein complement(1770859..1771824) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040934.1 CDS tpx NC_011080.1 1771940 1772446 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1771940..1772446 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040935.1 CDS SNSL254_A1807 NC_011080.1 1772536 1774077 R regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR complement(1772536..1774077) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040936.1 CDS SNSL254_A1808 NC_011080.1 1774225 1775286 R identified by match to protein family HMM PF05128; match to protein family HMM TIGR01620; hypothetical protein complement(1774225..1775286) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040937.1 CDS SNSL254_A1809 NC_011080.1 1775283 1776680 R identified by match to protein family HMM PF04317; hypothetical protein complement(1775283..1776680) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040938.1 CDS SNSL254_A1810 NC_011080.1 1776829 1777143 R rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase complement(1776829..1777143) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040939.1 CDS pspD NC_011080.1 1777219 1777437 R identified by match to protein family HMM PF09584; match to protein family HMM TIGR02979; peripheral inner membrane phage-shock protein complement(1777219..1777437) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040940.1 CDS pspC NC_011080.1 1777460 1777819 R 'with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock'; DNA-binding transcriptional activator PspC complement(1777460..1777819) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040941.1 CDS pspB NC_011080.1 1777819 1778043 R 'acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding'; phage shock protein B complement(1777819..1778043) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040942.1 CDS pspA NC_011080.1 1778103 1778771 R involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA complement(1778103..1778771) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040943.1 CDS pspF NC_011080.1 1778942 1779922 D 'transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor'; phage shock protein operon transcriptional activator 1778942..1779922 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040944.1 CDS SNSL254_A1816 NC_011080.1 1780034 1781683 D identified by match to protein family HMM PF00496; peptide transport periplasmic protein SapA 1780034..1781683 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040945.1 CDS sapB NC_011080.1 1781680 1782645 D identified by match to protein family HMM PF00528; peptide ABC transporter permease protein SapB 1781680..1782645 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040946.1 CDS sapC NC_011080.1 1782632 1783522 D identified by match to protein family HMM PF00528; peptide ABC transporter permease protein SapC 1782632..1783522 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040947.1 CDS sapD NC_011080.1 1783522 1784514 D identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein SapD 1783522..1784514 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040948.1 CDS sapF NC_011080.1 1784516 1785322 D identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein SapF 1784516..1785322 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040949.1 CDS SNSL254_A1821 NC_011080.1 1785338 1786045 R hypothetical protein complement(1785338..1786045) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040950.2 CDS SNSL254_A1822 NC_011080.1 1786512 1787885 R hypothetical protein complement(1786512..1787885) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040951.1 CDS fabI NC_011080.1 1788491 1789279 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1788491..1789279 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083625.1 CDS SNSL254_A1824 NC_011080.1 1789479 1790612 D hypothetical protein 1789479..1790612 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040952.1 CDS rnb NC_011080.1 1790701 1792635 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1790701..1792635 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040953.1 CDS SNSL254_A1826 NC_011080.1 1792888 1794879 D c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1792888..1794879 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040954.1 CDS SNSL254_A1827 NC_011080.1 1795001 1795180 D hypothetical protein 1795001..1795180 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040955.1 CDS SNSL254_A1828 NC_011080.1 1795267 1796019 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 1795267..1796019 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040956.1 CDS SNSL254_A1829 NC_011080.1 1796278 1796496 D lipoprotein 1796278..1796496 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040957.1 CDS SNSL254_A1830 NC_011080.1 1796616 1796942 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1796616..1796942) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040958.1 CDS pyrF NC_011080.1 1796942 1797679 R identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase complement(1796942..1797679) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040959.1 CDS SNSL254_A1832 NC_011080.1 1797870 1799039 R identified by match to protein family HMM PF07719; hypothetical protein complement(1797870..1799039) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040960.1 CDS SNSL254_A1833 NC_011080.1 1799046 1799354 R identified by match to protein family HMM PF06305; hypothetical protein complement(1799046..1799354) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040961.1 CDS SNSL254_A1834 NC_011080.1 1799504 1800268 R identified by match to protein family HMM PF01569; phosphatidylglycerophosphatase B complement(1799504..1800268) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040962.2 CDS ribA NC_011080.1 1800464 1801054 D 'catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate'; GTP cyclohydrolase II 1800464..1801054 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040963.1 CDS acnA NC_011080.1 1801110 1803785 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1801110..1803785) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040964.1 CDS SNSL254_A1837 NC_011080.1 1804170 1804340 R hypothetical protein complement(1804170..1804340) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040965.1 CDS SNSL254_A1838 NC_011080.1 1804341 1804469 R hypothetical protein complement(1804341..1804469) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040966.1 CDS cysB NC_011080.1 1804762 1805736 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(1804762..1805736) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040967.1 CDS SNSL254_A1839 NC_011080.1 1805692 1805856 D identified by glimmer; hypothetical protein 1805692..1805856 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040968.1 CDS topA NC_011080.1 1806141 1808738 R 'catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity'; DNA topoisomerase I complement(1806141..1808738) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040969.1 CDS SNSL254_A1842 NC_011080.1 1809141 1809392 D hypothetical protein 1809141..1809392 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040970.1 CDS SNSL254_A1843 NC_011080.1 1809434 1810480 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(1809434..1810480) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040971.1 CDS SNSL254_A1844 NC_011080.1 1810718 1811479 D identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 1810718..1811479 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040972.1 CDS cobO NC_011080.1 1811476 1812066 D 'catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide'; cob(I)yrinic acid a,c-diamide adenosyltransferase 1811476..1812066 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040973.1 CDS rluB NC_011080.1 1812153 1813028 R catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B complement(1812153..1813028) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040974.1 CDS SNSL254_A1847 NC_011080.1 1813129 1813749 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; hypothetical protein complement(1813129..1813749) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040975.1 CDS SNSL254_A1848 NC_011080.1 1813757 1814605 R identified by match to protein family HMM PF02811; phosphoesterase complement(1813757..1814605) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040976.1 CDS trpE NC_011080.1 1814899 1816461 D 'with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine'; anthranilate synthase component I 1814899..1816461 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040977.1 CDS trpD NC_011080.1 1816461 1818056 D bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1816461..1818056 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040978.1 CDS SNSL254_A1852 NC_011080.1 1818060 1819418 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1818060..1819418 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040979.1 CDS trpB NC_011080.1 1819428 1820621 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1819428..1820621 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040980.1 CDS trpA NC_011080.1 1820621 1821427 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1820621..1821427 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040981.1 CDS SNSL254_A1855 NC_011080.1 1821907 1822089 D hypothetical protein 1821907..1822089 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040982.1 CDS SNSL254_A1856 NC_011080.1 1822179 1822682 D identified by match to protein family HMM PF05974; hypothetical protein 1822179..1822682 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040983.1 CDS SNSL254_A1857 NC_011080.1 1822756 1823262 D identified by match to protein family HMM PF05974; hypothetical protein 1822756..1823262 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040984.1 CDS SNSL254_A1858 NC_011080.1 1823282 1824160 D identified by match to protein family HMM PF05067; catalase 1823282..1824160 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040985.1 CDS SNSL254_A1859 NC_011080.1 1824242 1824880 R receptor for colicin S4; outer membrane protein W complement(1824242..1824880) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040986.1 CDS SNSL254_A1860 NC_011080.1 1825218 1825622 D identified by match to protein family HMM PF03692; ferredoxin 1825218..1825622 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040987.1 CDS SNSL254_A1861 NC_011080.1 1825648 1826391 D identified by match to protein family HMM PF06790; hypothetical protein 1825648..1826391 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040988.1 CDS ispZ NC_011080.1 1826448 1826987 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1826448..1826987 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040989.1 CDS SNSL254_A1863 NC_011080.1 1827157 1827549 D YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1827157..1827549 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040990.1 CDS SNSL254_A1864 NC_011080.1 1827609 1828331 R 'membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins'; transporter complement(1827609..1828331) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040991.1 CDS SNSL254_A1865 NC_011080.1 1828555 1828851 D 'unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity'; hypothetical protein 1828555..1828851 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040992.1 CDS SNSL254_A1866 NC_011080.1 1828895 1829032 R hypothetical protein complement(1828895..1829032) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040993.1 CDS cls NC_011080.1 1829211 1830671 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1829211..1830671 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083626.1 CDS SNSL254_A1868 NC_011080.1 1830705 1831034 D dsDNA-mimic protein 1830705..1831034 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040994.1 CDS SNSL254_A1869 NC_011080.1 1831082 1831918 R identified by match to protein family HMM PF00520; match to protein family HMM PF07885; Ion transport protein complement(1831082..1831918) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040995.1 CDS oppF NC_011080.1 1831966 1832970 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein OppF complement(1831966..1832970) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040996.1 CDS oppD NC_011080.1 1832967 1833974 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein complement(1832967..1833974) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040997.1 CDS oppC NC_011080.1 1833986 1834894 R identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease OppC complement(1833986..1834894) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040998.1 CDS oppB NC_011080.1 1834909 1835829 R identified by match to protein family HMM PF00528; oligopeptide transporter permease complement(1834909..1835829) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002040999.1 CDS SNSL254_A1874 NC_011080.1 1835951 1837582 R identified by match to protein family HMM PF00496; periplasmic oligopeptide-binding protein complement(1835951..1837582) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041000.1 CDS SNSL254_A1875 NC_011080.1 1838346 1838993 R identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; hypothetical protein complement(1838346..1838993) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041001.1 CDS adhE NC_011080.1 1839470 1842148 D identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1839470..1842148 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041002.1 CDS tdk NC_011080.1 1842344 1842961 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(1842344..1842961) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041003.1 CDS SNSL254_A1878 NC_011080.1 1843624 1844037 D identified by match to protein family HMM PF00816; global DNA-binding transcriptional dual regulator H-NS 1843624..1844037 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041004.1 CDS galU NC_011080.1 1844169 1845077 R 'together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose'; UTP-glucose-1-phosphate uridylyltransferase complement(1844169..1845077) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041005.1 CDS SNSL254_A1880 NC_011080.1 1845280 1846293 R identified by match to protein family HMM PF00072; response regulator of RpoS complement(1845280..1846293) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041006.1 CDS SNSL254_A1881 NC_011080.1 1846384 1847289 R identified by match to protein family HMM PF01734; hypothetical protein complement(1846384..1847289) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041007.1 CDS SNSL254_A1882 NC_011080.1 1847352 1847858 D identified by match to protein family HMM PF02810; hypothetical protein 1847352..1847858 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041008.1 CDS purU NC_011080.1 1847909 1848751 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1847909..1848751 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041009.1 CDS SNSL254_A1890 NC_011080.1 1849905 1851434 R identified by match to protein family HMM PF08238; hypothetical protein complement(1849905..1851434) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041010.1 CDS SNSL254_A1891 NC_011080.1 1851470 1851634 D hypothetical protein 1851470..1851634 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041011.1 CDS narI NC_011080.1 1851676 1852353 R identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase subunit gamma complement(1851676..1852353) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041012.1 CDS narJ NC_011080.1 1852353 1853063 R identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 1 complement(1852353..1853063) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041013.1 CDS narH NC_011080.1 1853060 1854595 R identified by match to protein family HMM TIGR01660; nitrate reductase 1 subunit beta complement(1853060..1854595) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041014.1 CDS narG NC_011080.1 1854592 1858335 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase 1 subunit alpha complement(1854592..1858335) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041015.1 CDS SNSL254_A1896 NC_011080.1 1858723 1860120 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 1 complement(1858723..1860120) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041016.1 CDS SNSL254_A1897 NC_011080.1 1860461 1862257 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarX 1860461..1862257 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041017.1 CDS SNSL254_A1898 NC_011080.1 1862250 1862900 D two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1862250..1862900 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041018.1 CDS SNSL254_A1899 NC_011080.1 1862901 1864430 R hypothetical protein complement(1862901..1864430) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041019.1 CDS SNSL254_A1900 NC_011080.1 1864502 1864855 D identified by match to protein family HMM PF02635; hypothetical protein 1864502..1864855 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041020.1 CDS chaB NC_011080.1 1864935 1865165 R in Escherichia coli this protein ly regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator complement(1864935..1865165) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041021.1 CDS SNSL254_A1902 NC_011080.1 1865432 1866532 D identified by match to protein family HMM PF01699; match to protein family HMM TIGR00846; calcium/sodium:proton antiporter 1865432..1866532 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041022.1 CDS kdsA NC_011080.1 1866586 1867440 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1866586..1867440) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041023.1 CDS sirB1 NC_011080.1 1867478 1868287 R transcriptional regulator complement(1867478..1868287) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041024.1 CDS SNSL254_A1905 NC_011080.1 1868291 1868668 R identified by match to protein family HMM PF04247; transcriptional regulator complement(1868291..1868668) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041025.1 CDS hemK NC_011080.1 1868677 1869510 R HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1868677..1869510) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041026.1 CDS prfA NC_011080.1 1869510 1870592 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1869510..1870592) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041027.1 CDS hemA NC_011080.1 1870633 1871889 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1870633..1871889) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041028.1 CDS SNSL254_A1909 NC_011080.1 1872057 1872185 R identified by glimmer; hypothetical protein complement(1872057..1872185) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041029.1 CDS lolB NC_011080.1 1872203 1872826 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1872203..1872826 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041030.1 CDS ipk NC_011080.1 1872826 1873674 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1872826..1873674 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041031.1 CDS SNSL254_A1912 NC_011080.1 1873671 1873841 R identified by glimmer; hypothetical protein complement(1873671..1873841) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041032.1 CDS prs NC_011080.1 1873940 1874887 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1873940..1874887 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041033.1 CDS ychM NC_011080.1 1875012 1876697 D role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 1875012..1876697 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041034.1 CDS SNSL254_A1915 NC_011080.1 1876742 1877020 R 'YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function'; hypothetical protein complement(1876742..1877020) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041035.1 CDS pth NC_011080.1 1877296 1877880 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1877296..1877880 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041036.1 CDS engD NC_011080.1 1877997 1879088 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1877997..1879088 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041037.1 CDS SNSL254_A1918 NC_011080.1 1879104 1879229 R identified by glimmer; hypothetical protein complement(1879104..1879229) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041038.1 CDS SNSL254_A1919 NC_011080.1 1879879 1880004 R identified by glimmer; hypothetical protein complement(1879879..1880004) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041039.1 CDS SNSL254_A1920 NC_011080.1 1880185 1880466 D identified by glimmer; hypothetical protein 1880185..1880466 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041040.1 CDS SNSL254_A1921 NC_011080.1 1880724 1880960 D hypothetical protein 1880724..1880960 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041041.1 CDS SNSL254_A1922 NC_011080.1 1881433 1882698 R hypothetical protein complement(1881433..1882698) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041042.1 CDS SNSL254_A1923 NC_011080.1 1882969 1883097 R identified by glimmer; hypothetical protein complement(1882969..1883097) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041043.1 CDS SNSL254_A1924 NC_011080.1 1883166 1884311 D identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; hydrogenase-1 small chain 1883166..1884311 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041044.1 CDS SNSL254_A1925 NC_011080.1 1884308 1886101 D involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1884308..1886101 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041045.1 CDS cybH NC_011080.1 1886120 1886851 D identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; hydrogenase 1 b-type cytochrome subunit 1886120..1886851 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041046.1 CDS hybD NC_011080.1 1886848 1887444 D HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1886848..1887444 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041047.1 CDS SNSL254_A1928 NC_011080.1 1887434 1887838 D involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1887434..1887838 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041048.1 CDS SNSL254_A1929 NC_011080.1 1887835 1888683 D identified by match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF 1887835..1888683 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041049.1 CDS SNSL254_A1930 NC_011080.1 1888758 1890302 D identified by match to protein family HMM PF01654; cytochrome D ubiquinol oxidase subunit 1 1888758..1890302 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041050.1 CDS cydB NC_011080.1 1890314 1891450 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 1890314..1891450 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041051.1 CDS SNSL254_A1932 NC_011080.1 1891947 1893221 D identified by match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase 1891947..1893221 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041052.1 CDS SNSL254_A1933 NC_011080.1 1893239 1893355 R identified by glimmer; hypothetical protein complement(1893239..1893355) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041053.1 CDS treA NC_011080.1 1893435 1895147 D periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1893435..1895147 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041054.1 CDS SNSL254_A1935 NC_011080.1 1895210 1895470 R identified by match to protein family HMM PF04226; transglycosylase associated protein complement(1895210..1895470) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041055.1 CDS SNSL254_A1936 NC_011080.1 1895633 1896367 D identified by match to protein family HMM PF07238; match to protein family HMM PF07317; hypothetical protein 1895633..1896367 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083627.1 CDS SNSL254_A1937 NC_011080.1 1896381 1896992 R membrane-bound lytic murein transglycosylase E complement(1896381..1896992) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041056.1 CDS ldcA NC_011080.1 1897163 1898077 D catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1897163..1898077 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041057.1 CDS SNSL254_A1939 NC_011080.1 1898174 1899907 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1898174..1899907 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041058.1 CDS dadX NC_011080.1 1899969 1901039 R 'catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA'; alanine racemase complement(1899969..1901039) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041059.1 CDS SNSL254_A1941 NC_011080.1 1901053 1902351 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(1901053..1902351) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041060.1 CDS SNSL254_A1942 NC_011080.1 1902674 1904206 D identified by match to protein family HMM PF04293; SpoVR family protein 1902674..1904206 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041061.1 CDS fadR NC_011080.1 1904253 1904972 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(1904253..1904972) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041062.1 CDS nhaB NC_011080.1 1905192 1906736 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1905192..1906736 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041063.1 CDS SNSL254_A1945 NC_011080.1 1906878 1907408 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1906878..1907408 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041064.1 CDS SNSL254_A1946 NC_011080.1 1907518 1907859 D identified by match to protein family HMM PF09313; tellurite resistance protein TehB 1907518..1907859 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041065.1 CDS SNSL254_A1947 NC_011080.1 1907931 1908104 R identified by match to protein family HMM PF08178; hypothetical protein complement(1907931..1908104) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041066.1 CDS SNSL254_A1948 NC_011080.1 1908117 1908233 D identified by glimmer; hypothetical protein 1908117..1908233 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041067.1 CDS SNSL254_A1949 NC_011080.1 1908296 1908433 R hypothetical protein complement(1908296..1908433) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041068.1 CDS SNSL254_A1950 NC_011080.1 1908785 1909246 R identified by match to protein family HMM PF03692; hypothetical protein complement(1908785..1909246) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041069.1 CDS SNSL254_A1951 NC_011080.1 1909324 1909983 R identified by match to protein family HMM PF01557; hypothetical protein complement(1909324..1909983) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041070.2 CDS SNSL254_A1953 NC_011080.1 1910033 1910365 R hypothetical protein complement(1910033..1910365) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041071.1 CDS minC NC_011080.1 1910452 1911159 D blocks the formation of polar Z-ring septums; septum formation inhibitor 1910452..1911159 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041072.1 CDS minD NC_011080.1 1911183 1911995 D ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1911183..1911995 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041073.1 CDS minE NC_011080.1 1911999 1912265 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1911999..1912265 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041074.1 CDS rnd NC_011080.1 1912387 1913514 R identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D complement(1912387..1913514) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041075.1 CDS SNSL254_A1958 NC_011080.1 1913587 1915272 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1913587..1915272) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041076.1 CDS slp NC_011080.1 1915477 1916058 R identified by match to protein family HMM PF03843; match to protein family HMM TIGR00752; outer membrane protein Slp complement(1915477..1916058) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041077.1 CDS SNSL254_A1960 NC_011080.1 1916130 1916825 R identified by match to protein family HMM PF00814; M22 peptidase-like protein YeaZ complement(1916130..1916825) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041078.1 CDS SNSL254_A1961 NC_011080.1 1916883 1918793 R hypothetical protein complement(1916883..1918793) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041079.1 CDS SNSL254_A1962 NC_011080.1 1918925 1919269 D identified by match to protein family HMM PF01042; endoribonuclease L-PSP family protein 1918925..1919269 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041080.1 CDS SNSL254_A1963 NC_011080.1 1919275 1919454 R identified by match to protein family HMM PF03701; hypothetical protein complement(1919275..1919454) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041081.1 CDS pabB NC_011080.1 1919535 1920899 D identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; aminodeoxychorismate synthase, component I 1919535..1920899 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041082.1 CDS SNSL254_A1965 NC_011080.1 1920903 1921481 D identified by match to protein family HMM PF00293; hypothetical protein 1920903..1921481 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041083.1 CDS SNSL254_A1966 NC_011080.1 1921745 1923109 D identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 1921745..1923109 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041084.1 CDS SNSL254_A1967 NC_011080.1 1923247 1924848 D identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 1923247..1924848 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041085.1 CDS SNSL254_A1968 NC_011080.1 1924870 1926429 R identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741; TerC family/CBS/transporter associated membrane protein complement(1924870..1926429) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041086.1 CDS manX NC_011080.1 1926902 1927870 D identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; match to protein family HMM TIGR00854; PTS system mannose-specific transporter subunit IIAB 1926902..1927870 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041087.1 CDS manY NC_011080.1 1927923 1928723 D identified by match to protein family HMM PF03609; match to protein family HMM TIGR00822; PTS system mannose-specific transporter subunit IIC 1927923..1928723 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041088.1 CDS manZ NC_011080.1 1928736 1929587 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1928736..1929587 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041089.1 CDS SNSL254_A1972 NC_011080.1 1929645 1930103 D identified by match to protein family HMM PF06173; hypothetical protein 1929645..1930103 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041090.1 CDS SNSL254_A1974 NC_011080.1 1930513 1931079 D identified by match to protein family HMM PF02659; membrane protein YebN 1930513..1931079 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041091.1 CDS rrmA NC_011080.1 1931076 1931885 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase complement(1931076..1931885) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041092.1 CDS SNSL254_A1976 NC_011080.1 1931951 1933696 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI complement(1931951..1933696) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041093.1 CDS cspC NC_011080.1 1933916 1934125 R identified by match to protein family HMM PF00313; cold shock-like protein CspC complement(1933916..1934125) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041094.1 CDS SNSL254_A1978 NC_011080.1 1934930 1935163 R hypothetical protein complement(1934930..1935163) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041095.1 CDS SNSL254_A1979 NC_011080.1 1935288 1935431 R hypothetical protein complement(1935288..1935431) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041096.1 CDS SNSL254_A1980 NC_011080.1 1935589 1935828 D hypothetical protein 1935589..1935828 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041097.1 CDS SNSL254_A1981 NC_011080.1 1936040 1936831 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator KdgR complement(1936040..1936831) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083628.1 CDS SNSL254_A1982 NC_011080.1 1937007 1938380 D transporter 1937007..1938380 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041098.1 CDS SNSL254_A1983 NC_011080.1 1938428 1939309 R metalloprotease; heat shock protein HtpX complement(1938428..1939309) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041099.1 CDS prc NC_011080.1 1939502 1941550 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(1939502..1941550) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041100.1 CDS proQ NC_011080.1 1941570 1942256 R affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector complement(1941570..1942256) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041101.2 CDS SNSL254_A1986 NC_011080.1 1942354 1942938 R identified by match to protein family HMM PF01590; nucleotide-binding protein complement(1942354..1942938) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041102.1 CDS SNSL254_A1987 NC_011080.1 1942980 1944263 D identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; integral membrane protein PqiA family 1942980..1944263 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041103.1 CDS SNSL254_A1988 NC_011080.1 1944226 1946865 D identified by match to protein family HMM PF02470; mce-like protein 1944226..1946865 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041104.1 CDS yebU NC_011080.1 1946841 1948382 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1946841..1948382 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041105.1 CDS SNSL254_A1990 NC_011080.1 1948497 1948736 D identified by match to protein family HMM PF07351; hypothetical protein 1948497..1948736 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041106.1 CDS SNSL254_A1991 NC_011080.1 1948904 1949038 D identified by match to protein family HMM PF07358; hypothetical protein 1948904..1949038 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041107.1 CDS pphA NC_011080.1 1949057 1949707 R Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 complement(1949057..1949707) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041108.1 CDS SNSL254_A1993 NC_011080.1 1949725 1949898 R identified by glimmer; hypothetical protein complement(1949725..1949898) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041109.1 CDS SNSL254_A1994 NC_011080.1 1949931 1950095 R hypothetical protein complement(1949931..1950095) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041110.1 CDS SNSL254_A1995 NC_011080.1 1950157 1950306 R hypothetical protein complement(1950157..1950306) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041111.1 CDS SNSL254_A1996 NC_011080.1 1950380 1951102 R identified by match to protein family HMM PF05364; match to protein family HMM PF07487; guanine nucleotide exchange factor SopE complement(1950380..1951102) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041112.1 CDS SNSL254_A1997 NC_011080.1 1951368 1951514 D identified by glimmer; hypothetical protein 1951368..1951514 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041113.1 CDS SNSL254_A1998 NC_011080.1 1951801 1952181 D identified by match to protein family HMM PF07166; hypothetical protein 1951801..1952181 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041114.1 CDS SNSL254_A1999 NC_011080.1 1952497 1952973 D hypothetical protein 1952497..1952973 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041115.1 CDS SNSL254_A2000 NC_011080.1 1953453 1953584 R identified by glimmer; hypothetical protein complement(1953453..1953584) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041116.1 CDS SNSL254_A2001 NC_011080.1 1953695 1953811 D identified by glimmer; hypothetical protein 1953695..1953811 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041117.1 CDS SNSL254_A2002 NC_011080.1 1953847 1953975 R identified by glimmer; hypothetical protein complement(1953847..1953975) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041118.1 CDS SNSL254_A2003 NC_011080.1 1954271 1954444 D identified by glimmer; hypothetical protein 1954271..1954444 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041119.1 CDS SNSL254_A2005 NC_011080.1 1955463 1955612 D identified by glimmer; hypothetical protein 1955463..1955612 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041120.1 CDS SNSL254_A2006 NC_011080.1 1955941 1956951 D identified by match to protein family HMM PF01757; O-actetyl transferase related protein 1955941..1956951 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041121.1 CDS SNSL254_A2008 NC_011080.1 1958473 1958589 R identified by glimmer; hypothetical protein complement(1958473..1958589) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041122.1 CDS SNSL254_A2010 NC_011080.1 1958951 1959085 R identified by glimmer; hypothetical protein complement(1958951..1959085) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041123.1 CDS SNSL254_A2012 NC_011080.1 1960572 1960766 R hypothetical protein complement(1960572..1960766) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041124.1 CDS SNSL254_A2013 NC_011080.1 1960989 1961135 D hypothetical protein 1960989..1961135 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041125.1 CDS SNSL254_A2016 NC_011080.1 1962851 1963219 D hypothetical protein 1962851..1963219 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041126.1 CDS SNSL254_A2017 NC_011080.1 1963696 1963896 R identified by glimmer; hypothetical protein complement(1963696..1963896) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041127.1 CDS SNSL254_A2018 NC_011080.1 1964514 1965428 D identified by match to protein family HMM PF00892; hypothetical protein 1964514..1965428 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041128.1 CDS SNSL254_A2019 NC_011080.1 1965561 1965719 D hypothetical protein 1965561..1965719 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041129.1 CDS SNSL254_A2020 NC_011080.1 1965723 1966343 D hypothetical protein 1965723..1966343 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041130.1 CDS SNSL254_A2021 NC_011080.1 1966831 1966977 D hypothetical protein 1966831..1966977 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041131.1 CDS SNSL254_A2022 NC_011080.1 1967491 1967616 R arsenical pump membrane protein complement(1967491..1967616) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041132.1 CDS SNSL254_A2023 NC_011080.1 1968482 1969363 R identified by match to protein family HMM PF01661; match to protein family HMM PF02413; tail fiber assembly protein complement(1968482..1969363) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041133.1 CDS SNSL254_A2024 NC_011080.1 1969518 1969781 R identified by match to protein family HMM PF07278; gifsy-2 prophage protein complement(1969518..1969781) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041134.1 CDS SNSL254_A2025 NC_011080.1 1969836 1970024 D identified by glimmer; hypothetical protein 1969836..1970024 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041135.1 CDS SNSL254_A2026 NC_011080.1 1970089 1970256 D hypothetical protein 1970089..1970256 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041136.1 CDS SNSL254_A2028 NC_011080.1 1971521 1972468 D exodeoxyribonuclease 8 1971521..1972468 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041137.1 CDS SNSL254_A2029 NC_011080.1 1972465 1973544 D identified by match to protein family HMM PF00589; match to protein family HMM PF09003; phage integrase 1972465..1973544 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041138.1 CDS SNSL254_A2032 NC_011080.1 1973917 1974270 R hypothetical protein complement(1973917..1974270) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041139.1 CDS SNSL254_A2033 NC_011080.1 1974287 1975162 R identified by match to protein family HMM PF05425; copper resistance protein D complement(1974287..1975162) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041140.1 CDS SNSL254_A2034 NC_011080.1 1975163 1975537 R identified by match to protein family HMM PF04234; hypothetical protein complement(1975163..1975537) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041141.1 CDS SNSL254_A2035 NC_011080.1 1975675 1975905 D identified by match to protein family HMM PF06440; DNA polymerase III subunit theta 1975675..1975905 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041142.1 CDS SNSL254_A2036 NC_011080.1 1976013 1976669 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1976013..1976669 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041143.1 CDS SNSL254_A2037 NC_011080.1 1976693 1977391 D 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1976693..1977391 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041144.1 CDS SNSL254_A2038 NC_011080.1 1977428 1979479 R PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 complement(1977428..1979479) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041145.1 CDS SNSL254_A2039 NC_011080.1 1979693 1980352 R identified by match to protein family HMM PF04391; hypothetical protein complement(1979693..1980352) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041146.1 CDS SNSL254_A2040 NC_011080.1 1980446 1980799 R secreted protein; unknown function; hypothetical protein complement(1980446..1980799) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041147.1 CDS SNSL254_A2041 NC_011080.1 1980867 1981157 R identified by match to protein family HMM PF07130; DNA damage-inducible protein YebG complement(1980867..1981157) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041148.1 CDS purT NC_011080.1 1981288 1982466 D 'non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis'; phosphoribosylglycinamide formyltransferase 2 1981288..1982466 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041149.1 CDS eda NC_011080.1 1982566 1983207 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(1982566..1983207) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041150.1 CDS edd NC_011080.1 1983245 1985056 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(1983245..1985056) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041151.1 CDS zwf NC_011080.1 1985291 1986766 R 'catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate'; glucose-6-phosphate 1-dehydrogenase complement(1985291..1986766) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041152.1 CDS SNSL254_A2046 NC_011080.1 1987108 1987977 D 'Represses the expression of the zwf, eda, glp and gap'; DNA-binding transcriptional regulator HexR 1987108..1987977 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041153.1 CDS pykA NC_011080.1 1988101 1989543 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1988101..1989543 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041154.1 CDS msbB NC_011080.1 1989616 1990587 R 'Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA'; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(1989616..1990587) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041155.1 CDS SNSL254_A2049 NC_011080.1 1990704 1992023 R identified by match to protein family HMM PF01476; match to protein family HMM PF01551; match to protein family HMM PF04225; match to protein family HMM PF08525; hypothetical protein complement(1990704..1992023) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041156.1 CDS znuA NC_011080.1 1992039 1992983 R involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein complement(1992039..1992983) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041157.1 CDS znuC NC_011080.1 1993062 1993817 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 1993062..1993817 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041158.1 CDS znuB NC_011080.1 1993814 1994599 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 1993814..1994599 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041159.1 CDS ruvB NC_011080.1 1994678 1995688 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1994678..1995688) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041160.1 CDS ruvA NC_011080.1 1995697 1996308 R plays an essential role in ATP-dependent branch migration of the Holliday junction; holliday junction DNA helicase RuvA complement(1995697..1996308) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041161.1 CDS SNSL254_A2055 NC_011080.1 1996668 1997360 R hypothetical protein complement(1996668..1997360) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041162.1 CDS SNSL254_A2056 NC_011080.1 1997569 1998168 D identified by match to protein family HMM PF06520; hypothetical protein 1997569..1998168 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041163.1 CDS ruvC NC_011080.1 1998170 1998691 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; holliday junction resolvase complement(1998170..1998691) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041164.1 CDS SNSL254_A2058 NC_011080.1 1998728 1999468 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(1998728..1999468) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041165.1 CDS ntpA NC_011080.1 1999498 1999938 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(1999498..1999938) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041166.1 CDS aspS NC_011080.1 2000053 2001825 R 'catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes'; aspartyl-tRNA synthetase complement(2000053..2001825) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041167.1 CDS SNSL254_A2061 NC_011080.1 2002150 2002716 D identified by match to protein family HMM PF00857; hypothetical protein 2002150..2002716 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041168.1 CDS SNSL254_A2062 NC_011080.1 2002713 2003531 D identified by match to protein family HMM PF01904; hypothetical protein 2002713..2003531 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041169.1 CDS SNSL254_A2063 NC_011080.1 2003584 2003979 D hypothetical protein 2003584..2003979 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041170.1 CDS SNSL254_A2064 NC_011080.1 2004020 2004763 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740; methyltransferase 2004020..2004763 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041171.1 CDS SNSL254_A2065 NC_011080.1 2004760 2005731 D identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM TIGR00452; methyltransferase 2004760..2005731 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041172.1 CDS SNSL254_A2066 NC_011080.1 2005967 2006713 R identified by match to protein family HMM PF03932; copper homeostasis protein CutC complement(2005967..2006713) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041173.1 CDS SNSL254_A2067 NC_011080.1 2006733 2007302 R identified by match to protein family HMM PF06185; hypothetical protein complement(2006733..2007302) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041174.1 CDS SNSL254_A2068 NC_011080.1 2007407 2007523 D identified by glimmer; hypothetical protein 2007407..2007523 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041175.1 CDS argS NC_011080.1 2007539 2009272 D 'catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase'; arginyl-tRNA synthetase 2007539..2009272 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041176.1 CDS mrdA NC_011080.1 2009461 2011332 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 2009461..2011332 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041177.1 CDS SNSL254_A2071 NC_011080.1 2011386 2012525 R identified by match to protein family HMM PF07470; glycosyl hydrolase family protein complement(2011386..2012525) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041178.1 CDS SNSL254_A2072 NC_011080.1 2012762 2013154 R identified by match to protein family HMM PF06366; flagellar protein FlhE complement(2012762..2013154) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041179.1 CDS flhA NC_011080.1 2013154 2015232 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2013154..2015232) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041180.1 CDS flhB NC_011080.1 2015225 2016376 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(2015225..2016376) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041181.1 CDS SNSL254_A2075 NC_011080.1 2016570 2017214 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ complement(2016570..2017214) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041182.1 CDS cheY NC_011080.1 2017225 2017614 R 'chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble'; chemotaxis regulatory protein CheY complement(2017225..2017614) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041183.1 CDS cheB NC_011080.1 2017632 2018681 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(2017632..2018681) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041184.1 CDS cheR NC_011080.1 2018678 2019544 R methylates the MCP; chemotaxis methyltransferase CheR complement(2018678..2019544) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041185.1 CDS SNSL254_A2079 NC_011080.1 2019705 2021366 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein II complement(2019705..2021366) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041187.1 CDS SNSL254_A2081 NC_011080.1 2021603 2022106 R identified by match to protein family HMM PF01584; purine-binding chemotaxis protein complement(2021603..2022106) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041188.1 CDS SNSL254_A2082 NC_011080.1 2022127 2024136 R chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA complement(2022127..2024136) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041189.1 CDS motB NC_011080.1 2024147 2025076 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(2024147..2025076) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041190.1 CDS motA NC_011080.1 2025073 2025960 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(2025073..2025960) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041191.1 CDS flhC NC_011080.1 2026085 2026669 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC complement(2026085..2026669) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041192.1 CDS flhD NC_011080.1 2026666 2027007 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD complement(2026666..2027007) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041193.1 CDS SNSL254_A2087 NC_011080.1 2027229 2027372 R identified by glimmer; hypothetical protein complement(2027229..2027372) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041194.1 CDS SNSL254_A2088 NC_011080.1 2027803 2028231 D 'ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress'; universal stress protein UspC 2027803..2028231 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041195.1 CDS otsA NC_011080.1 2028249 2029670 R identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400; trehalose-6-phosphate synthase complement(2028249..2029670) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041196.1 CDS otsB NC_011080.1 2029645 2030448 R biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase complement(2029645..2030448) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041197.1 CDS SNSL254_A2091 NC_011080.1 2031081 2031623 R identified by match to protein family HMM PF01965; ThiJ/PfpI domain-containing protein complement(2031081..2031623) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041198.1 CDS SNSL254_A2092 NC_011080.1 2031699 2031848 D identified by glimmer; hypothetical protein 2031699..2031848 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041199.1 CDS SNSL254_A2093 NC_011080.1 2032186 2032689 D identified by match to protein family HMM PF00210; ferritin 2032186..2032689 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041200.1 CDS SNSL254_A2094 NC_011080.1 2032868 2033506 R identified by match to protein family HMM PF02502; hypothetical protein complement(2032868..2033506) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041201.1 CDS SNSL254_A2095 NC_011080.1 2033762 2034097 D outer membrane lipoprotein 2033762..2034097 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041203.1 CDS ftnA NC_011080.1 2034337 2034834 D cytoplasmic iron storage protein; ferritin 2034337..2034834 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041204.1 CDS SNSL254_A2098 NC_011080.1 2034880 2035119 R hypothetical protein complement(2034880..2035119) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041205.1 CDS SNSL254_A2099 NC_011080.1 2035289 2036557 D identified by match to protein family HMM PF01490; match to protein family HMM PF03222; match to protein family HMM TIGR00837; tyrosine-specific transport protein 2035289..2036557 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041206.1 CDS SNSL254_A2100 NC_011080.1 2036632 2037297 R identified by match to protein family HMM PF02810; match to protein family HMM TIGR02292; hypothetical protein complement(2036632..2037297) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041207.1 CDS SNSL254_A2101 NC_011080.1 2037536 2037862 R glucose-6-phosphate dehydrogenase complement(2037536..2037862) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041208.1 CDS SNSL254_A2102 NC_011080.1 2038075 2039508 R identified by match to protein family HMM PF00877; cell wall-associated hydrolase complement(2038075..2039508) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041209.1 CDS SNSL254_A2103 NC_011080.1 2039729 2040013 R hypothetical protein complement(2039729..2040013) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041210.1 CDS SNSL254_A2104 NC_011080.1 2040107 2040235 R identified by glimmer; hypothetical protein complement(2040107..2040235) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041211.1 CDS pgsA NC_011080.1 2040763 2041311 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; phosphatidylglycerophosphate synthetase complement(2040763..2041311) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041212.1 CDS uvrC NC_011080.1 2041368 2043200 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2041368..2043200) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041213.1 CDS uvrY NC_011080.1 2043197 2043853 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(2043197..2043853) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041214.1 CDS SNSL254_A2111 NC_011080.1 2044317 2044541 D hypothetical protein 2044317..2044541 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041215.1 CDS SNSL254_A2112 NC_011080.1 2044608 2045330 R regulates genes involved in cell division; DNA-binding transcriptional activator SdiA complement(2044608..2045330) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041216.1 CDS SNSL254_A2113 NC_011080.1 2045562 2046314 R identified by match to protein family HMM PF00005; amino-acid ABC transporter ATP-binding protein YecC complement(2045562..2046314) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041217.1 CDS SNSL254_A2114 NC_011080.1 2046311 2046979 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine-binding periplasmic protein/glutamine transport system permease protein complement(2046311..2046979) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041218.1 CDS SNSL254_A2115 NC_011080.1 2047000 2047986 R catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase complement(2047000..2047986) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041219.1 CDS fliY NC_011080.1 2048140 2048940 R identified by match to protein family HMM PF00497; cystine transporter subunit complement(2048140..2048940) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041220.1 CDS fliA NC_011080.1 2049697 2050386 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(2049697..2050386) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041221.1 CDS SNSL254_A2119 NC_011080.1 2050613 2051818 R lysine-N-methylase complement(2050613..2051818) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041222.1 CDS SNSL254_A2120 NC_011080.1 2051897 2053405 R 'structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes'; flagellin complement(2051897..2053405) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041223.1 CDS SNSL254_A2121 NC_011080.1 2053555 2053683 D identified by glimmer; hypothetical protein 2053555..2053683 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041224.1 CDS fliD NC_011080.1 2053662 2055065 D involved in flagellin assembly; flagellar capping protein 2053662..2055065 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041225.1 CDS fliS NC_011080.1 2055080 2055487 D flagellin specific chaperone; flagellar protein FliS 2055080..2055487 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041226.1 CDS SNSL254_A2124 NC_011080.1 2055487 2055855 D binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2055487..2055855 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041227.1 CDS SNSL254_A2125 NC_011080.1 2055927 2057411 D 'converts 1,4-alpha-D-glucans to maltodextrin'; alpha-amylase 2055927..2057411 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041228.1 CDS SNSL254_A2126 NC_011080.1 2057451 2057864 R hypothetical protein complement(2057451..2057864) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041229.2 CDS SNSL254_A2127 NC_011080.1 2057990 2059255 D identified by match to protein family HMM PF04143; inner membrane protein 2057990..2059255 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041230.1 CDS SNSL254_A2128 NC_011080.1 2059252 2059485 D identified by match to protein family HMM PF01206; hypothetical protein 2059252..2059485 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041231.1 CDS SNSL254_A2129 NC_011080.1 2059783 2060136 D 50S ribosomal protein 2059783..2060136 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041232.1 CDS fliE NC_011080.1 2060256 2060570 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(2060256..2060570) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041233.1 CDS SNSL254_A2132 NC_011080.1 2060617 2060745 R hypothetical protein complement(2060617..2060745) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041234.1 CDS fliF NC_011080.1 2060730 2062469 D 'the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod'; flagellar MS-ring protein 2060730..2062469 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041235.1 CDS fliG NC_011080.1 2062462 2063457 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2062462..2063457 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041236.1 CDS fliH NC_011080.1 2063450 2064157 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2063450..2064157 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041237.1 CDS fliI NC_011080.1 2064157 2065527 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2064157..2065527 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041238.1 CDS fliJ NC_011080.1 2065549 2065992 D rod/hook and filament chaperone; flagellar biosynthesis chaperone 2065549..2065992 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041239.1 CDS SNSL254_A2137 NC_011080.1 2065989 2067212 D identified by match to protein family HMM PF02120; flagellar hook-length control protein 2065989..2067212 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041240.1 CDS fliL NC_011080.1 2067317 2067784 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2067317..2067784 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041241.1 CDS fliM NC_011080.1 2067789 2068793 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2067789..2068793 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041242.1 CDS fliN NC_011080.1 2068790 2069203 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2068790..2069203 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041243.1 CDS SNSL254_A2141 NC_011080.1 2069203 2069580 D 'with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus'; flagellar biosynthesis protein FliO 2069203..2069580 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041244.1 CDS fliP NC_011080.1 2069580 2070317 D 'FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus'; flagellar biosynthesis protein FliP 2069580..2070317 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041245.1 CDS fliQ NC_011080.1 2070327 2070596 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2070327..2070596 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041246.1 CDS fliR NC_011080.1 2070605 2071399 D 'FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus'; flagellar biosynthesis protein FliR 2070605..2071399 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041247.1 CDS rcsA NC_011080.1 2071681 2072304 D identified by match to protein family HMM PF00196; colanic acid capsular biosynthesis activation protein A 2071681..2072304 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041248.1 CDS SNSL254_A2146 NC_011080.1 2072343 2072537 R hypothetical protein complement(2072343..2072537) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041249.1 CDS SNSL254_A2147 NC_011080.1 2072666 2072893 D hypothetical protein 2072666..2072893 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041250.1 CDS SNSL254_A2149 NC_011080.1 2073203 2074018 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2073203..2074018 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041251.1 CDS SNSL254_A2150 NC_011080.1 2073997 2075709 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; cellulose synthesis regulatory protein complement(2073997..2075709) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041252.1 CDS SNSL254_A2151 NC_011080.1 2075874 2076059 R hypothetical protein complement(2075874..2076059) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041253.1 CDS SNSL254_A2152 NC_011080.1 2076136 2077047 R identified by match to protein family HMM PF05661; hypothetical protein complement(2076136..2077047) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041254.1 CDS SNSL254_A2153 NC_011080.1 2077223 2078143 D identified by match to protein family HMM PF00892; hypothetical protein 2077223..2078143 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041255.1 CDS SNSL254_A2154 NC_011080.1 2078132 2078602 R identified by match to protein family HMM PF03852; match to protein family HMM TIGR00632; very short patch repair protein complement(2078132..2078602) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041256.1 CDS SNSL254_A2155 NC_011080.1 2078583 2080013 R identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA cytosine methylase complement(2078583..2080013) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041257.1 CDS SNSL254_A2156 NC_011080.1 2080087 2080782 R identified by match to protein family HMM PF01966; hypothetical protein complement(2080087..2080782) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041258.1 CDS SNSL254_A2157 NC_011080.1 2080862 2081140 R outer membrane protein N complement(2080862..2081140) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041259.1 CDS SNSL254_A2158 NC_011080.1 2081280 2081411 R identified by glimmer; hypothetical protein complement(2081280..2081411) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041260.1 CDS SNSL254_A2159 NC_011080.1 2081823 2083019 D identified by match to protein family HMM PF00267; outer membrane protein N 2081823..2083019 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041262.1 CDS umuC NC_011080.1 2084143 2085411 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(2084143..2085411) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041263.1 CDS SNSL254_A2163 NC_011080.1 2085414 2085833 R binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD complement(2085414..2085833) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041264.1 CDS SNSL254_A2164 NC_011080.1 2085960 2086121 R hypothetical protein complement(2085960..2086121) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041265.1 CDS SNSL254_A2166 NC_011080.1 2086602 2087399 D identified by match to protein family HMM PF06167; hypothetical protein 2086602..2087399 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041266.1 CDS SNSL254_A2171 NC_011080.1 2088708 2089232 D endoprotease 2088708..2089232 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041267.1 CDS SNSL254_A2172 NC_011080.1 2089281 2089406 R hypothetical protein complement(2089281..2089406) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041269.1 CDS SNSL254_A2175 NC_011080.1 2090748 2092916 D identified by match to protein family HMM PF07661; match to protein family HMM PF08238; hypothetical protein 2090748..2092916 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041270.1 CDS SNSL254_A2176 NC_011080.1 2092973 2094703 D hypothetical protein 2092973..2094703 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041271.1 CDS SNSL254_A2177 NC_011080.1 2094734 2094868 D hypothetical protein 2094734..2094868 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041272.1 CDS SNSL254_A2178 NC_011080.1 2094913 2095083 D hypothetical protein 2094913..2095083 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041273.1 CDS amn NC_011080.1 2095605 2097059 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(2095605..2097059) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041274.1 CDS SNSL254_A2180 NC_011080.1 2097077 2097265 R identified by glimmer; hypothetical protein complement(2097077..2097265) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083629.1 CDS SNSL254_A2183 NC_011080.1 2097930 2099456 R MATE family multidrug exporte complement(2097930..2099456) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041276.1 CDS SNSL254_A2185 NC_011080.1 2099787 2100089 D integrase 2099787..2100089 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041277.1 CDS arsB NC_011080.1 2100108 2101157 R identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832; arsenical-resistance protein complement(2100108..2101157) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041278.1 CDS SNSL254_A2187 NC_011080.1 2101175 2102935 R identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenical pump-driving ATPase complement(2101175..2102935) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041279.1 CDS SNSL254_A2188 NC_011080.1 2102979 2103341 R identified by match to protein family HMM PF06953; arsenical resistance operon trans-acting repressor ArsD complement(2102979..2103341) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041280.1 CDS SNSL254_A2189 NC_011080.1 2103375 2103851 R identified by match to protein family HMM PF01451; arsenate reductase complement(2103375..2103851) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041281.1 CDS SNSL254_A2190 NC_011080.1 2103848 2104261 R arsenic resistance transcriptional regulator complement(2103848..2104261) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041282.1 CDS SNSL254_A2191 NC_011080.1 2104971 2105900 R identified by match to protein family HMM PF03734; hypothetical protein complement(2104971..2105900) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041283.1 CDS cobT NC_011080.1 2105978 2107048 R 'catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole'; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2105978..2107048) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041284.1 CDS cobS NC_011080.1 2107075 2107818 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(2107075..2107818) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041285.1 CDS cobU NC_011080.1 2107815 2108360 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase complement(2107815..2108360) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041286.1 CDS cobQ NC_011080.1 2108357 2109898 R 'catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation'; cobyric acid synthase complement(2108357..2109898) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041287.1 CDS cbiO NC_011080.1 2109874 2110689 R with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit complement(2109874..2110689) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041288.1 CDS cbiQ NC_011080.1 2110698 2111375 R identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ complement(2110698..2111375) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041289.1 CDS SNSL254_A2198 NC_011080.1 2111362 2111643 R periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN complement(2111362..2111643) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041290.1 CDS cbiM NC_011080.1 2111645 2112382 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(2111645..2112382) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041291.1 CDS cobI NC_011080.1 2112379 2113092 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(2112379..2113092) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041292.1 CDS SNSL254_A2201 NC_011080.1 2113089 2113883 R identified by match to protein family HMM PF06180; sirohydrochlorin cobaltochelatase complement(2113089..2113883) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041293.1 CDS cobK NC_011080.1 2113886 2114677 R 'CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6'; cobalt-precorrin-6x reductase complement(2113886..2114677) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041294.1 CDS cobJ NC_011080.1 2114674 2115399 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase complement(2114674..2115399) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041295.1 CDS SNSL254_A2204 NC_011080.1 2115399 2116454 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(2115399..2116454) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041296.1 CDS cobM NC_011080.1 2116435 2117208 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase complement(2116435..2117208) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041297.1 CDS SNSL254_A2206 NC_011080.1 2117192 2117770 R catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase complement(2117192..2117770) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041298.1 CDS cbiE NC_011080.1 2117760 2118365 R catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase complement(2117760..2118365) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041299.1 CDS cbiD NC_011080.1 2118359 2119498 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2118359..2119498) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041300.1 CDS cbiC NC_011080.1 2119498 2120130 R catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase complement(2119498..2120130) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041301.1 CDS cbiB NC_011080.1 2120141 2121100 R CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein complement(2120141..2121100) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041302.1 CDS cobB NC_011080.1 2121097 2122476 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2121097..2122476) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041303.1 CDS SNSL254_A2213 NC_011080.1 2123074 2123985 R identified by match to protein family HMM PF00165; regulatory protein PocR complement(2123074..2123985) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041304.1 CDS SNSL254_A2214 NC_011080.1 2124202 2124996 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; propanediol diffusion facilitator complement(2124202..2124996) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041305.1 CDS pduA NC_011080.1 2125521 2125805 D identified by match to protein family HMM PF00936; propanediol utilization protein PduA 2125521..2125805 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041306.1 CDS SNSL254_A2216 NC_011080.1 2125802 2126614 D identified by match to protein family HMM PF00936; propanediol utilization protein PduB 2125802..2126614 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041307.1 CDS pduC NC_011080.1 2126633 2128297 D identified by match to protein family HMM PF02286; propanediol utilization dehydratase large subunit 2126633..2128297 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041308.1 CDS SNSL254_A2218 NC_011080.1 2128308 2128982 D identified by match to protein family HMM PF02288; propanediol utilization: dehydratase, medium subunit 2128308..2128982 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041309.1 CDS SNSL254_A2219 NC_011080.1 2128997 2129518 D identified by match to protein family HMM PF02287; propanediol dehydratase small subunit 2128997..2129518 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041310.1 CDS SNSL254_A2220 NC_011080.1 2129534 2131366 D identified by match to protein family HMM PF08841; glycerol dehydratase reactivation factor large subunit 2129534..2131366 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041311.1 CDS SNSL254_A2221 NC_011080.1 2131356 2131706 D propanediol dehydratase reactivation protein 2131356..2131706 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041312.1 CDS SNSL254_A2222 NC_011080.1 2131725 2132000 D identified by match to protein family HMM PF00936; propanediol utilization protein PduJ 2131725..2132000 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041313.1 CDS SNSL254_A2223 NC_011080.1 2132025 2132486 D identified by match to protein family HMM PF00936; propanediol utilization protein (pduK) 2132025..2132486 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041314.1 CDS SNSL254_A2224 NC_011080.1 2132486 2133118 D identified by match to protein family HMM PF06130; propanediol utilization 2132486..2133118 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041315.1 CDS SNSL254_A2225 NC_011080.1 2133115 2133606 D propanediol utilization 2133115..2133606 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041316.1 CDS SNSL254_A2226 NC_011080.1 2133610 2133885 D identified by match to protein family HMM PF03319; propanediol utilization protein (pduK) 2133610..2133885 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041317.1 CDS SNSL254_A2227 NC_011080.1 2133895 2134905 D identified by match to protein family HMM PF01923; match to protein family HMM PF03928; match to protein family HMM TIGR00636; hypothetical protein 2133895..2134905 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041318.1 CDS SNSL254_A2228 NC_011080.1 2134902 2136296 D identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE 2134902..2136296 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041319.1 CDS SNSL254_A2229 NC_011080.1 2136308 2137420 D identified by match to protein family HMM PF00465; propanediol utilization propanol dehydrogenase 2136308..2137420 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041320.1 CDS SNSL254_A2230 NC_011080.1 2137417 2138772 D identified by match to protein family HMM PF01512; polyhedral body protein 2137417..2138772 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041321.1 CDS SNSL254_A2231 NC_011080.1 2138775 2139329 D identified by match to protein family HMM PF00936; polyhedral body protein 2138775..2139329 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041322.1 CDS SNSL254_A2232 NC_011080.1 2139329 2139679 D identified by match to protein family HMM PF00936; propanediol utilization protein PduU 2139329..2139679 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041323.1 CDS eutP NC_011080.1 2139684 2140136 D identified by match to protein family HMM TIGR02528; ethanolamine utilization protein EutP 2139684..2140136 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041324.1 CDS ackA NC_011080.1 2140121 2141335 D 'involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol'; propionate kinase 2140121..2141335 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041325.1 CDS SNSL254_A2235 NC_011080.1 2141429 2142295 D identified by match to protein family HMM PF00288; match to protein family HMM PF08544; propanediol utilization 2141429..2142295 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041326.1 CDS SNSL254_A2236 NC_011080.1 2142329 2142664 R identified by match to protein family HMM PF04363; hypothetical protein complement(2142329..2142664) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041327.1 CDS SNSL254_A2237 NC_011080.1 2142909 2143967 R hypothetical protein complement(2142909..2143967) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041328.1 CDS SNSL254_A2238 NC_011080.1 2144086 2144553 R identified by match to protein family HMM PF06445; DNA gyrase inhibitor complement(2144086..2144553) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041329.1 CDS dacD NC_011080.1 2144704 2145876 R 'removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase complement(2144704..2145876) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041330.1 CDS SNSL254_A2240 NC_011080.1 2146000 2146764 R identified by match to protein family HMM PF01292; thiosulfate reductase cytochrome B subunit complement(2146000..2146764) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041331.1 CDS SNSL254_A2241 NC_011080.1 2146761 2147339 R identified by match to protein family HMM PF00037; (4Fe-4S)-binding protein complement(2146761..2147339) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041332.1 CDS SNSL254_A2242 NC_011080.1 2147354 2149630 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; thiosulfate reductase complement(2147354..2149630) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041333.1 CDS SNSL254_A2243 NC_011080.1 2150249 2152597 D secreted effector protein 2150249..2152597 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041334.1 CDS sbcB NC_011080.1 2152964 2154394 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2152964..2154394 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041335.1 CDS yeeF NC_011080.1 2154530 2155888 R identified by match to protein family HMM PF00324; amino acid permease complement(2154530..2155888) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041337.1 CDS SNSL254_A2247 NC_011080.1 2156174 2157088 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein complement(2156174..2157088) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041338.1 CDS SNSL254_A2248 NC_011080.1 2157134 2157958 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; hypothetical protein complement(2157134..2157958) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041339.1 CDS hisG NC_011080.1 2158317 2159216 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2158317..2159216 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041340.1 CDS hisD NC_011080.1 2159319 2160623 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2159319..2160623 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041341.1 CDS hisC NC_011080.1 2160620 2161699 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2160620..2161699 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041342.1 CDS hisB NC_011080.1 2161696 2162763 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2161696..2162763 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041343.1 CDS hisH NC_011080.1 2162763 2163353 D 'with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide'; imidazole glycerol phosphate synthase subunit HisH 2162763..2163353 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041344.1 CDS hisA NC_011080.1 2163353 2164090 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2163353..2164090 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041345.1 CDS hisF NC_011080.1 2164072 2164848 D 'catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase'; imidazole glycerol phosphate synthase subunit HisF 2164072..2164848 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041346.1 CDS SNSL254_A2257 NC_011080.1 2164842 2165453 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2164842..2165453 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041347.1 CDS SNSL254_A2258 NC_011080.1 2165534 2166517 R identified by match to protein family HMM PF02706; chain length determinant protein complement(2165534..2166517) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041348.1 CDS SNSL254_A2259 NC_011080.1 2166660 2167826 R identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; udp-glucose 6-dehydrogenase complement(2166660..2167826) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041349.1 CDS gnd NC_011080.1 2168063 2169469 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2168063..2169469) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041350.1 CDS SNSL254_A2261 NC_011080.1 2169633 2171063 R identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025; undecaprenyl-phosphate galactose phosphotransferase complement(2169633..2171063) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041351.1 CDS SNSL254_A2262 NC_011080.1 2171142 2172578 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase complement(2171142..2172578) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041352.1 CDS SNSL254_A2263 NC_011080.1 2172586 2174007 R identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase complement(2172586..2174007) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041353.1 CDS SNSL254_A2264 NC_011080.1 2174022 2175179 R identified by match to protein family HMM PF00534; group 1 glycosyl transferase complement(2174022..2175179) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041354.1 CDS SNSL254_A2265 NC_011080.1 2175166 2176176 R identified by match to protein family HMM PF00534; second mannosyl transferase complement(2175166..2176176) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041355.1 CDS SNSL254_A2266 NC_011080.1 2176176 2177375 R identified by match to protein family HMM PF04932; O-antigen polymerase complement(2176176..2177375) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041356.1 CDS SNSL254_A2267 NC_011080.1 2177469 2178512 R identified by match to protein family HMM PF00535; rhamnosyl transferase complement(2177469..2178512) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041357.1 CDS SNSL254_A2268 NC_011080.1 2178514 2179128 R hypothetical protein complement(2178514..2179128) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041358.1 CDS SNSL254_A2269 NC_011080.1 2179175 2180137 R identified by match to protein family HMM PF00535; glycosyl transferase complement(2179175..2180137) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041359.1 CDS SNSL254_A2270 NC_011080.1 2180130 2181470 R hypothetical protein complement(2180130..2181470) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041360.1 CDS SNSL254_A2271 NC_011080.1 2181470 2182351 R identified by match to protein family HMM PF01370; CDP-abequose synthase complement(2181470..2182351) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041361.1 CDS SNSL254_A2272 NC_011080.1 2182365 2183678 R identified by match to protein family HMM PF01041; lipopolysaccharide biosynthesis protein RfbH complement(2182365..2183678) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041362.1 CDS rfbG NC_011080.1 2183705 2184784 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622; CDP-glucose 4,6-dehydratase complement(2183705..2184784) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041363.1 CDS rfbF NC_011080.1 2184789 2185562 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623; glucose-1-phosphate cytidylyltransferase complement(2184789..2185562) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041364.1 CDS rfbC NC_011080.1 2186558 2187106 R identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2186558..2187106) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041365.1 CDS rfbA NC_011080.1 2187110 2187994 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase complement(2187110..2187994) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041366.1 CDS rfbD NC_011080.1 2188036 2188935 R 'with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose'; dTDP-4-dehydrorhamnose reductase complement(2188036..2188935) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041367.1 CDS rfbB NC_011080.1 2188935 2190020 R NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase complement(2188935..2190020) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041368.1 CDS galF NC_011080.1 2190397 2191290 R 'together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose'; UTP-glucose-1-phosphate uridylyltransferase complement(2190397..2191290) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041369.1 CDS wcaM NC_011080.1 2191468 2192871 R WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein complement(2191468..2192871) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041370.1 CDS SNSL254_A2282 NC_011080.1 2192882 2194102 R identified by match to protein family HMM PF00534; colanic acid biosynthesis glycosyltransferase WcaL complement(2192882..2194102) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041371.1 CDS SNSL254_A2283 NC_011080.1 2194099 2195379 R identified by match to protein family HMM PF04230; pyruvyl transferase complement(2194099..2195379) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041372.1 CDS SNSL254_A2284 NC_011080.1 2195401 2196933 R identified by match to protein family HMM PF01943; colanic acid exporter complement(2195401..2196933) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041373.1 CDS SNSL254_A2285 NC_011080.1 2196981 2198375 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase complement(2196981..2198375) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041374.1 CDS cpsG NC_011080.1 2198429 2199799 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase complement(2198429..2199799) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041375.1 CDS cpsB NC_011080.1 2199910 2201346 R identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase complement(2199910..2201346) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041376.1 CDS wcaI NC_011080.1 2201349 2202572 R identified by match to protein family HMM PF00534; glycosyl transferase complement(2201349..2202572) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041377.1 CDS nudD NC_011080.1 2202569 2203042 R identified by match to protein family HMM PF00293; GDP-mannose mannosyl hydrolase complement(2202569..2203042) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041378.1 CDS fcl NC_011080.1 2203045 2204010 R identified by match to protein family HMM PF01370; GDP-L-fucose synthetase complement(2203045..2204010) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041379.1 CDS gmd NC_011080.1 2204013 2205134 R identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase complement(2204013..2205134) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041380.1 CDS SNSL254_A2292 NC_011080.1 2205158 2205712 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF complement(2205158..2205712) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041381.1 CDS SNSL254_A2293 NC_011080.1 2205728 2206474 R identified by match to protein family HMM PF00535; glycosyl transferase complement(2205728..2206474) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041382.1 CDS wcaD NC_011080.1 2206487 2207701 R essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid biosynthesis protein complement(2206487..2207701) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041383.1 CDS SNSL254_A2295 NC_011080.1 2207676 2208893 R glycosyl transferase complement(2207676..2208893) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041384.1 CDS SNSL254_A2296 NC_011080.1 2208890 2209378 R 'acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium'; colanic acid biosynthesis acetyltransferase WcaB complement(2208890..2209378) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041385.2 CDS SNSL254_A2297 NC_011080.1 2209381 2210223 R identified by match to protein family HMM PF00535; glycosyl transferase complement(2209381..2210223) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041386.1 CDS SNSL254_A2298 NC_011080.1 2210310 2212469 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase complement(2210310..2212469) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041387.1 CDS SNSL254_A2299 NC_011080.1 2212466 2212915 R 'Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis'; tyrosine phosphatase complement(2212466..2212915) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041388.2 CDS SNSL254_A2300 NC_011080.1 2212921 2214060 R identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export protein complement(2212921..2214060) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083630.1 CDS SNSL254_A2302 NC_011080.1 2214735 2216315 D membrane protein 2214735..2216315 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041390.1 CDS SNSL254_A2303 NC_011080.1 2216401 2218257 R 'YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs'; assembly protein complement(2216401..2218257) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041391.1 CDS dcd NC_011080.1 2218296 2218877 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2218296..2218877) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041392.1 CDS udk NC_011080.1 2218968 2219609 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2218968..2219609) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041393.1 CDS SNSL254_A2306 NC_011080.1 2219685 2219855 R hypothetical protein complement(2219685..2219855) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041394.1 CDS SNSL254_A2307 NC_011080.1 2219934 2222930 D identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF05231; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; mase1 domain family 2219934..2222930 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041395.1 CDS SNSL254_A2308 NC_011080.1 2222898 2223767 R 'inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine'; 3-methyladenine DNA glycosylase complement(2222898..2223767) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041396.1 CDS SNSL254_A2309 NC_011080.1 2223901 2225253 D chaperone 2223901..2225253 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041397.1 CDS SNSL254_A2311 NC_011080.1 2225490 2225606 R identified by glimmer; hypothetical protein complement(2225490..2225606) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041398.1 CDS SNSL254_A2312 NC_011080.1 2225694 2226935 D 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtA 2225694..2226935 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041399.1 CDS mdtB NC_011080.1 2226935 2230057 D 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtB 2226935..2230057 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041400.1 CDS mdtC NC_011080.1 2230058 2233138 D 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtC 2230058..2233138 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041401.1 CDS SNSL254_A2315 NC_011080.1 2233135 2234547 D identified by match to protein family HMM PF07690; multidrug efflux system protein MdtE 2233135..2234547 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041402.1 CDS SNSL254_A2316 NC_011080.1 2234547 2235950 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; signal transduction histidine-protein kinase BaeS 2234547..2235950 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041403.1 CDS SNSL254_A2317 NC_011080.1 2235947 2236669 D 'response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport'; DNA-binding transcriptional regulator BaeR 2235947..2236669 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041404.1 CDS SNSL254_A2318 NC_011080.1 2236938 2238140 D hypothetical protein 2236938..2238140 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083631.1 CDS SNSL254_A2319 NC_011080.1 2238140 2238856 D inner membrane protein 2238140..2238856 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041405.1 CDS SNSL254_A2320 NC_011080.1 2238867 2240978 D hypothetical protein 2238867..2240978 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041406.1 CDS SNSL254_A2321 NC_011080.1 2241094 2242455 D identified by match to protein family HMM PF01136; peptidase, U32 family 2241094..2242455 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041407.1 CDS SNSL254_A2323 NC_011080.1 2242945 2243952 D hypothetical protein 2242945..2243952 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041408.1 CDS SNSL254_A2324 NC_011080.1 2243988 2244257 R Tir chaperone complement(2243988..2244257) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041409.1 CDS SNSL254_A2325 NC_011080.1 2244608 2244760 D identified by glimmer; hypothetical protein 2244608..2244760 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041410.1 CDS SNSL254_A2326 NC_011080.1 2245223 2245339 R hypothetical protein complement(2245223..2245339) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041411.1 CDS SNSL254_A2327 NC_011080.1 2245423 2246322 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2245423..2246322 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083632.1 CDS SNSL254_A2328 NC_011080.1 2246375 2247427 R fructose-bisphosphate aldolase complement(2246375..2247427) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041412.1 CDS yegT NC_011080.1 2247681 2248952 D identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside transporter 2247681..2248952 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041413.1 CDS SNSL254_A2330 NC_011080.1 2248949 2249953 D identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase family protein 2248949..2249953 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041414.1 CDS SNSL254_A2331 NC_011080.1 2249950 2250915 D identified by match to protein family HMM PF00294; kinase PfkB family 2249950..2250915 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041415.1 CDS SNSL254_A2332 NC_011080.1 2250889 2251635 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(2250889..2251635) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041416.1 CDS thiD NC_011080.1 2251671 2252471 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(2251671..2252471) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041417.1 CDS thiM NC_011080.1 2252458 2253255 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(2252458..2253255) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041418.1 CDS SNSL254_A2336 NC_011080.1 2253354 2253539 R identified by glimmer; hypothetical protein complement(2253354..2253539) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041419.1 CDS SNSL254_A2337 NC_011080.1 2253665 2253979 D hypothetical protein 2253665..2253979 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041420.1 CDS SNSL254_A2338 NC_011080.1 2254023 2255045 R hypothetical protein complement(2254023..2255045) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041421.1 CDS SNSL254_A2339 NC_011080.1 2255061 2257547 R identified by match to protein family HMM PF00577; fimbrial usher protein complement(2255061..2257547) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041422.1 CDS SNSL254_A2340 NC_011080.1 2257576 2258256 R identified by match to protein family HMM PF00345; pilus assembly chaperone complement(2257576..2258256) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041423.1 CDS SNSL254_A2341 NC_011080.1 2258318 2258851 R identified by match to protein family HMM PF00419; fimbrial subunit protein complement(2258318..2258851) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041424.1 CDS SNSL254_A2342 NC_011080.1 2259130 2259411 R hypothetical protein complement(2259130..2259411) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041425.1 CDS SNSL254_A2343 NC_011080.1 2259689 2260798 R ATPase complement(2259689..2260798) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041426.1 CDS metG NC_011080.1 2260963 2262996 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2260963..2262996 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041427.1 CDS SNSL254_A2345 NC_011080.1 2263237 2263695 D identified by match to protein family HMM PF06998; hypothetical protein 2263237..2263695 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041428.2 CDS SNSL254_A2346 NC_011080.1 2263867 2264397 D identified by match to protein family HMM PF06998; hypothetical protein 2263867..2264397 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041429.1 CDS SNSL254_A2347 NC_011080.1 2264454 2264921 R identified by match to protein family HMM PF07308; hypothetical protein complement(2264454..2264921) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041430.1 CDS SNSL254_A2348 NC_011080.1 2264968 2265687 R unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT complement(2264968..2265687) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041431.1 CDS SNSL254_A2349 NC_011080.1 2265684 2267369 R identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase complement(2265684..2267369) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041432.1 CDS SNSL254_A2350 NC_011080.1 2267592 2268323 D identified by match to protein family HMM PF00376; merR family transcriptional regulator 2267592..2268323 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041433.1 CDS SNSL254_A2351 NC_011080.1 2268471 2269202 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2268471..2269202) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041434.1 CDS SNSL254_A2352 NC_011080.1 2269186 2270133 R identified by match to protein family HMM PF00005; glycine betaine/carnitine/choline transport ATP-binding protein opuCA complement(2269186..2270133) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041435.1 CDS SNSL254_A2353 NC_011080.1 2270126 2271259 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2270126..2271259) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041436.1 CDS SNSL254_A2354 NC_011080.1 2271299 2272216 R identified by match to protein family HMM PF04069; amine ABC transporter substrate-binding protein complement(2271299..2272216) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041437.1 CDS SNSL254_A2355 NC_011080.1 2272397 2274664 R identified by match to protein family HMM PF00933; match to protein family HMM PF01915; beta-glucosidase complement(2272397..2274664) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041438.1 CDS SNSL254_A2356 NC_011080.1 2274961 2276691 D 'component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent'; D-lactate dehydrogenase 2274961..2276691 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041439.1 CDS pbpG NC_011080.1 2276750 2277697 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2276750..2277697) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041440.1 CDS SNSL254_A2358 NC_011080.1 2277863 2278450 R identified by match to protein family HMM PF06930; hypothetical protein complement(2277863..2278450) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041441.1 CDS SNSL254_A2359 NC_011080.1 2278609 2279178 D identified by match to protein family HMM PF09335; hypothetical protein 2278609..2279178 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041442.1 CDS SNSL254_A2360 NC_011080.1 2279226 2279987 R identified by match to protein family HMM PF00106; acetoin dehydrogenase complement(2279226..2279987) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041443.1 CDS SNSL254_A2361 NC_011080.1 2280053 2281489 R 'may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride'; multidrug resistance outer membrane protein MdtQ complement(2280053..2281489) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041444.1 CDS SNSL254_A2363 NC_011080.1 2281540 2281698 R hypothetical protein complement(2281540..2281698) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041445.1 CDS SNSL254_A2362 NC_011080.1 2281680 2281877 D hypothetical protein 2281680..2281877 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041446.1 CDS SNSL254_A2364 NC_011080.1 2281948 2282943 R identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase C complement(2281948..2282943) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041447.1 CDS SNSL254_A2365 NC_011080.1 2282995 2284188 R catalyzes the formation of catechol from salicylate; salicylate hydroxylase complement(2282995..2284188) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041448.1 CDS maiA NC_011080.1 2284203 2284847 R identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262; maleylacetoacetate isomerase complement(2284203..2284847) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041449.1 CDS SNSL254_A2367 NC_011080.1 2284856 2285557 R identified by match to protein family HMM PF01557; FAA-hydrolase family protein complement(2284856..2285557) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041450.1 CDS gtdA NC_011080.1 2285573 2286610 R identified by match to protein family HMM PF07883; match to protein family HMM TIGR02272; gentisate 1,2-dioxygenase complement(2285573..2286610) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041451.1 CDS SNSL254_A2369 NC_011080.1 2286622 2287980 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; 4-hydroxybenzoate transporter complement(2286622..2287980) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083633.1 CDS SNSL254_A2370 NC_011080.1 2288106 2289014 D transcriptional regulator 2288106..2289014 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041452.1 CDS SNSL254_A2371 NC_011080.1 2289146 2289544 D identified by match to protein family HMM PF03788; hypothetical protein 2289146..2289544 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041453.1 CDS SNSL254_A2372 NC_011080.1 2289541 2290236 D identified by match to protein family HMM PF04172; match to protein family HMM TIGR00659; hypothetical protein 2289541..2290236 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041454.1 CDS cdd NC_011080.1 2290390 2291274 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2290390..2291274 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041455.1 CDS SNSL254_A2374 NC_011080.1 2291451 2292170 D identified by match to protein family HMM PF02698; hypothetical protein 2291451..2292170 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041456.1 CDS SNSL254_A2375 NC_011080.1 2292173 2292412 D hypothetical protein 2292173..2292412 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041457.1 CDS SNSL254_A2376 NC_011080.1 2292617 2293858 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2292617..2293858 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041458.1 CDS SNSL254_A2377 NC_011080.1 2293852 2295087 D 'catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines'; dihydropyrimidine dehydrogenase 2293852..2295087 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041459.1 CDS mglC NC_011080.1 2295162 2296172 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein complement(2295162..2296172) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041460.1 CDS SNSL254_A2379 NC_011080.1 2296188 2297708 R with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein complement(2296188..2297708) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041462.1 CDS SNSL254_A2381 NC_011080.1 2297842 2298840 R identified by match to protein family HMM PF00532; D-galactose-binding periplasmic protein complement(2297842..2298840) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041463.1 CDS galS NC_011080.1 2299339 2300361 R negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS complement(2299339..2300361) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041464.1 CDS SNSL254_A2383 NC_011080.1 2300511 2301653 R identified by match to protein family HMM PF04171; match to protein family HMM PF04235; hypothetical protein complement(2300511..2301653) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041465.1 CDS folE NC_011080.1 2301668 2302336 R 'involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer'; GTP cyclohydrolase I complement(2301668..2302336) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041466.1 CDS fghA NC_011080.1 2302666 2303523 D identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821; S-formylglutathione hydrolase 2302666..2303523 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041467.1 CDS SNSL254_A2386 NC_011080.1 2303512 2303946 R identified by match to protein family HMM PF01381; transcriptional regulator complement(2303512..2303946) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041468.1 CDS SNSL254_A2387 NC_011080.1 2303906 2305273 R identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase complement(2303906..2305273) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041469.1 CDS serB NC_011080.1 2305490 2306377 D identified by match to protein family HMM PF00702; match to protein family HMM PF06888; match to protein family HMM PF08282; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 2305490..2306377 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041470.1 CDS SNSL254_A2389 NC_011080.1 2306410 2307732 D identified by match to protein family HMM PF07690; regulatory protein UhpC 2306410..2307732 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041471.1 CDS SNSL254_A2390 NC_011080.1 2307776 2309728 R 'Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein'; colicin I receptor complement(2307776..2309728) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041472.1 CDS SNSL254_A2391 NC_011080.1 2310112 2311581 R identified by match to protein family HMM PF00324; lysine transporter complement(2310112..2311581) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041473.1 CDS SNSL254_A2392 NC_011080.1 2311771 2312634 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator complement(2311771..2312634) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041475.1 CDS SNSL254_A2393 NC_011080.1 2312755 2313804 D identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698; hypothetical protein 2312755..2313804 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041476.1 CDS SNSL254_A2395 NC_011080.1 2313883 2314740 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2313883..2314740 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041477.1 CDS SNSL254_A2396 NC_011080.1 2314805 2316493 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC complement(2314805..2316493) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041478.1 CDS fruK NC_011080.1 2316510 2317448 R 'converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers'; 1-phosphofructokinase complement(2316510..2317448) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041479.1 CDS fruB NC_011080.1 2317448 2318578 R 'phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr'; PTS system fructose-specific transporter subunit IIA/HPr protein complement(2317448..2318578) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041480.1 CDS SNSL254_A2399 NC_011080.1 2318599 2318730 D identified by glimmer; hypothetical protein 2318599..2318730 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041481.1 CDS SNSL254_A2400 NC_011080.1 2318815 2318937 D identified by glimmer; hypothetical protein 2318815..2318937 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041482.1 CDS SNSL254_A2401 NC_011080.1 2318947 2320128 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00899; sugar efflux transporter B 2318947..2320128 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041483.1 CDS SNSL254_A2402 NC_011080.1 2320192 2320857 R hypothetical protein complement(2320192..2320857) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041484.1 CDS SNSL254_A2403 NC_011080.1 2320859 2320981 R hypothetical protein complement(2320859..2320981) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041485.1 CDS SNSL254_A2404 NC_011080.1 2321369 2321623 R hypothetical protein complement(2321369..2321623) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041486.1 CDS SNSL254_A2405 NC_011080.1 2321948 2322520 D 'Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein'; elongation factor P 2321948..2322520 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041487.1 CDS SNSL254_A2406 NC_011080.1 2322705 2323718 D identified by match to protein family HMM PF02492; cobalamin synthesis protein P47K 2322705..2323718 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041488.1 CDS SNSL254_A2407 NC_011080.1 2323721 2324467 D identified by match to protein family HMM PF01569; hypothetical protein 2323721..2324467 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041489.2 CDS spr NC_011080.1 2324881 2325453 D 'by similarity, Spr seems to have peptidase activity; involved in thermoresistance'; outer membrane lipoprotein 2324881..2325453 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041490.1 CDS SNSL254_A2409 NC_011080.1 2325778 2327334 D identified by match to protein family HMM PF00563; hypothetical protein 2325778..2327334 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041491.1 CDS SNSL254_A2410 NC_011080.1 2327441 2329246 D identified by match to protein family HMM PF00496; extracellular solute-binding protein 2327441..2329246 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041492.1 CDS SNSL254_A2411 NC_011080.1 2329256 2330350 D identified by match to protein family HMM PF00528; ABC transporter permease 2329256..2330350 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041493.1 CDS SNSL254_A2412 NC_011080.1 2330350 2331375 D identified by match to protein family HMM PF00528; ABC transporter permease 2330350..2331375 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041494.1 CDS SNSL254_A2413 NC_011080.1 2331377 2332966 D identified by match to protein family HMM PF00005; match to protein family HMM PF08352; glutathione import ATP-binding protein GsiA 2331377..2332966 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041495.1 CDS SNSL254_A2414 NC_011080.1 2332970 2333314 R hypothetical protein complement(2332970..2333314) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041496.1 CDS bcr NC_011080.1 2333705 2334895 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein complement(2333705..2334895) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041497.1 CDS rsuA NC_011080.1 2334923 2335618 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A complement(2334923..2335618) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041498.1 CDS SNSL254_A2417 NC_011080.1 2335770 2337530 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase 2335770..2337530 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041499.1 CDS rplY NC_011080.1 2337655 2337939 D 'the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response'; 50S ribosomal protein L25 2337655..2337939 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041500.1 CDS SNSL254_A2419 NC_011080.1 2338047 2338667 R hypothetical protein complement(2338047..2338667) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041501.1 CDS ndpA NC_011080.1 2338695 2339702 R identified by match to protein family HMM PF04245; nucleoid-associated protein NdpA complement(2338695..2339702) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041502.1 CDS SNSL254_A2421 NC_011080.1 2339882 2340109 D identified by match to protein family HMM PF07208; hypothetical protein 2339882..2340109 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041503.1 CDS SNSL254_A2422 NC_011080.1 2340141 2341901 D identified by match to protein family HMM PF00884; hypothetical protein 2340141..2341901 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041504.1 CDS SNSL254_A2425 NC_011080.1 2342672 2345038 R leucine-rich repeat protein complement(2342672..2345038) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041505.1 CDS SNSL254_A2426 NC_011080.1 2345355 2345474 R identified by glimmer; hypothetical protein complement(2345355..2345474) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041506.1 CDS SNSL254_A2427 NC_011080.1 2345706 2346548 R identified by match to protein family HMM PF03406; side tail fiber protein complement(2345706..2346548) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041508.1 CDS SNSL254_A2429 NC_011080.1 2347181 2347738 R identified by match to protein family HMM PF09411; hypothetical protein complement(2347181..2347738) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041509.1 CDS SNSL254_A2430 NC_011080.1 2348474 2349121 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2348474..2349121 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041510.1 CDS SNSL254_A2431 NC_011080.1 2349165 2350208 R identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 complement(2349165..2350208) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041511.1 CDS SNSL254_A2432 NC_011080.1 2350205 2350762 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interchange protein DsbE complement(2350205..2350762) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041512.1 CDS ccmF NC_011080.1 2350759 2352690 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF complement(2350759..2352690) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041513.1 CDS SNSL254_A2434 NC_011080.1 2352687 2353166 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(2352687..2353166) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041514.1 CDS SNSL254_A2435 NC_011080.1 2353163 2353375 R identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; hypothetical protein complement(2353163..2353375) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041515.1 CDS SNSL254_A2436 NC_011080.1 2353372 2354118 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC superfamily protein complement(2353372..2354118) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041516.1 CDS ccmB NC_011080.1 2354161 2354820 R identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB complement(2354161..2354820) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041517.1 CDS ccmA NC_011080.1 2354817 2355440 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(2354817..2355440) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041518.1 CDS napC NC_011080.1 2355455 2356057 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC complement(2355455..2356057) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041519.1 CDS napB NC_011080.1 2356067 2356516 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit complement(2356067..2356516) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041520.1 CDS napH NC_011080.1 2356632 2357501 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(2356632..2357501) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041521.1 CDS napG NC_011080.1 2357488 2358183 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(2357488..2358183) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041522.1 CDS napA NC_011080.1 2358190 2360676 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(2358190..2360676) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083634.1 CDS napD NC_011080.1 2360673 2360936 R periplasmic nitrate reductase assembly protein complement(2360673..2360936) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041523.1 CDS napF NC_011080.1 2360926 2361417 R Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein complement(2360926..2361417) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041524.1 CDS SNSL254_A2446 NC_011080.1 2361819 2362325 D 'serine protease inhibitor, inhibits trypsin and other proteases'; ecotin 2361819..2362325 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041525.1 CDS SNSL254_A2447 NC_011080.1 2362525 2364168 R efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component complement(2362525..2364168) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041526.1 CDS SNSL254_A2448 NC_011080.1 2364244 2364894 R identified by match to protein family HMM PF03171; alpha-ketoglutarate-dependent dioxygenase AlkB complement(2364244..2364894) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041527.1 CDS SNSL254_A2449 NC_011080.1 2364897 2365955 R identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589; regulatory protein ada complement(2364897..2365955) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041528.1 CDS SNSL254_A2450 NC_011080.1 2366039 2367091 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE complement(2366039..2367091) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041529.1 CDS SNSL254_A2451 NC_011080.1 2367206 2368342 R allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C complement(2367206..2368342) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041530.1 CDS SNSL254_A2454 NC_011080.1 2369071 2371740 D identified by match to protein family HMM PF01627; match to protein family HMM PF02518; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2369071..2371740 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041531.1 CDS rcsB NC_011080.1 2371757 2372407 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2371757..2372407 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041532.1 CDS SNSL254_A2456 NC_011080.1 2372510 2375356 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF09456; hybrid sensory kinase in two-component regulatory system with RcsB and YojN complement(2372510..2375356) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041533.1 CDS gyrA NC_011080.1 2375474 2378110 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(2375474..2378110) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041534.1 CDS SNSL254_A2458 NC_011080.1 2378520 2379722 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase complement(2378520..2379722) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041535.1 CDS SNSL254_A2459 NC_011080.1 2379737 2381062 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; permease complement(2379737..2381062) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041536.1 CDS SNSL254_A2460 NC_011080.1 2381112 2381996 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2381112..2381996 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041537.1 CDS ubiG NC_011080.1 2382079 2382807 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2382079..2382807 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041538.1 CDS nrdA NC_011080.1 2383163 2385448 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2383163..2385448 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041539.1 CDS nrdB NC_011080.1 2385561 2386691 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2385561..2386691 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041540.1 CDS SNSL254_A2464 NC_011080.1 2386691 2386945 D 'plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases'; 2Fe-2S ferredoxin 2386691..2386945 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041541.1 CDS SNSL254_A2465 NC_011080.1 2386947 2388137 R identified by match to protein family HMM PF07690; quinolone resistence NorA protein complement(2386947..2388137) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041542.1 CDS SNSL254_A2466 NC_011080.1 2388299 2389177 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2388299..2389177 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041543.1 CDS glpQ NC_011080.1 2389292 2390362 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(2389292..2390362) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041544.1 CDS glpT NC_011080.1 2390367 2391725 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter complement(2390367..2391725) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041545.1 CDS glpA NC_011080.1 2391998 2393626 D 'anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor'; sn-glycerol-3-phosphate dehydrogenase subunit A 2391998..2393626 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041546.1 CDS glpB NC_011080.1 2393616 2394875 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2393616..2394875 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041547.1 CDS glpC NC_011080.1 2394872 2396062 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2394872..2396062 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041548.1 CDS SNSL254_A2472 NC_011080.1 2396488 2397510 D 'similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system'; deubiquitinase 2396488..2397510 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041549.1 CDS SNSL254_A2473 NC_011080.1 2397620 2397769 R competence damage-inducible protein A complement(2397620..2397769) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041550.1 CDS SNSL254_A2474 NC_011080.1 2397802 2398605 R identified by match to protein family HMM PF03328; aldolase complement(2397802..2398605) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041551.1 CDS SNSL254_A2475 NC_011080.1 2398631 2399920 R identified by match to protein family HMM PF07690; major facilitator family protein complement(2398631..2399920) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041552.1 CDS SNSL254_A2476 NC_011080.1 2399976 2401181 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein complement(2399976..2401181) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041553.1 CDS SNSL254_A2477 NC_011080.1 2401195 2401974 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator complement(2401195..2401974) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041554.1 CDS SNSL254_A2478 NC_011080.1 2402227 2403423 R identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR00200; competence damage-inducible protein A complement(2402227..2403423) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041555.1 CDS SNSL254_A2479 NC_011080.1 2403538 2404212 R identified by match to protein family HMM PF07437; hypothetical protein complement(2403538..2404212) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041556.1 CDS SNSL254_A2480 NC_011080.1 2404359 2404784 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 2404359..2404784 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041557.1 CDS SNSL254_A2481 NC_011080.1 2404829 2405434 R identified by match to protein family HMM PF00300; Ais protein complement(2404829..2405434) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041558.1 CDS SNSL254_A2482 NC_011080.1 2405714 2406871 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2405714..2406871 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041559.1 CDS SNSL254_A2483 NC_011080.1 2406874 2407857 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2406874..2407857 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041560.1 CDS SNSL254_A2484 NC_011080.1 2407854 2409836 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2407854..2409836 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041561.1 CDS SNSL254_A2485 NC_011080.1 2409833 2410732 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 2409833..2410732 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041562.1 CDS arnT NC_011080.1 2410729 2412375 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2410729..2412375 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041563.1 CDS SNSL254_A2487 NC_011080.1 2412372 2412707 D identified by match to protein family HMM PF00893; hypothetical protein 2412372..2412707 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041564.1 CDS SNSL254_A2488 NC_011080.1 2412707 2413084 D hypothetical protein 2412707..2413084 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041565.1 CDS SNSL254_A2489 NC_011080.1 2413079 2413336 R signal transduction protein PmrD complement(2413079..2413336) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041566.1 CDS menE NC_011080.1 2413434 2414801 R identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase complement(2413434..2414801) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041567.1 CDS menC NC_011080.1 2414798 2415760 R 'catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate'; O-succinylbenzoate synthase complement(2414798..2415760) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041568.1 CDS menB NC_011080.1 2415760 2416617 R 'catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA'; naphthoate synthase complement(2415760..2416617) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041569.1 CDS SNSL254_A2493 NC_011080.1 2416632 2417390 R catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase complement(2416632..2417390) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041570.1 CDS menD NC_011080.1 2417387 2419057 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2417387..2419057) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041571.1 CDS SNSL254_A2495 NC_011080.1 2419143 2420438 R identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; menaquinone-specific isochorismate synthase complement(2419143..2420438) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041572.1 CDS SNSL254_A2496 NC_011080.1 2420539 2420844 R identified by match to protein family HMM PF05957; hypothetical protein complement(2420539..2420844) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041573.1 CDS SNSL254_A2498 NC_011080.1 2420899 2421360 R identified by match to protein family HMM PF00583; hypothetical protein complement(2420899..2421360) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041574.2 CDS SNSL254_A2497 NC_011080.1 2421421 2422338 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2421421..2422338 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041575.1 CDS SNSL254_A2499 NC_011080.1 2422404 2423408 D identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheW 2422404..2423408 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041576.1 CDS nuoN NC_011080.1 2423549 2425006 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(2423549..2425006) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041577.1 CDS nuoM NC_011080.1 2425013 2426542 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(2425013..2426542) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041578.1 CDS nuoL NC_011080.1 2426619 2428460 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(2426619..2428460) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041579.1 CDS nuoK NC_011080.1 2428457 2428759 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(2428457..2428759) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041580.1 CDS nuoJ NC_011080.1 2428756 2429310 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(2428756..2429310) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041581.1 CDS nuoI NC_011080.1 2429321 2429863 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2429321..2429863) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041582.1 CDS nuoH NC_011080.1 2429878 2430855 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(2429878..2430855) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041583.1 CDS nuoG NC_011080.1 2430852 2433578 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(2430852..2433578) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041584.1 CDS nuoF NC_011080.1 2433609 2434946 R 'shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase'; NADH dehydrogenase I subunit F complement(2433609..2434946) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041585.1 CDS nuoE NC_011080.1 2434943 2435443 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(2434943..2435443) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041586.1 CDS nuoC NC_011080.1 2435446 2437248 R 'NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms'; NADH:ubiquinone oxidoreductase subunit C/D complement(2435446..2437248) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041587.1 CDS nuoB NC_011080.1 2437335 2437997 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2437335..2437997) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041588.1 CDS nuoA NC_011080.1 2438013 2438456 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(2438013..2438456) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041589.1 CDS SNSL254_A2513 NC_011080.1 2438851 2439003 R hypothetical protein complement(2438851..2439003) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041590.1 CDS SNSL254_A2514 NC_011080.1 2439083 2440021 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; HTH-type transcriptional regulator PecT complement(2439083..2440021) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041591.1 CDS SNSL254_A2515 NC_011080.1 2440686 2440847 R hypothetical protein complement(2440686..2440847) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041592.1 CDS SNSL254_A2516 NC_011080.1 2440953 2442167 D 'broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor'; aminotransferase 2440953..2442167 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041593.1 CDS SNSL254_A2517 NC_011080.1 2442261 2442860 D identified by match to protein family HMM PF01966; hypothetical protein 2442261..2442860 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041594.1 CDS SNSL254_A2518 NC_011080.1 2442966 2444792 R identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808; citrate transporter complement(2442966..2444792) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041595.1 CDS SNSL254_A2519 NC_011080.1 2444869 2445528 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphatase complement(2444869..2445528) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041596.1 CDS SNSL254_A2520 NC_011080.1 2445539 2446078 R identified by match to protein family HMM PF03887; hypothetical protein complement(2445539..2446078) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041597.1 CDS SNSL254_A2521 NC_011080.1 2446116 2446571 R identified by match to protein family HMM PF04217; hypothetical protein complement(2446116..2446571) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041598.1 CDS SNSL254_A2522 NC_011080.1 2446740 2446874 D identified by glimmer; hypothetical protein 2446740..2446874 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041599.1 CDS ackA NC_011080.1 2446911 2448113 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2446911..2448113 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041600.1 CDS pta NC_011080.1 2448190 2450334 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2448190..2450334 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041601.1 CDS SNSL254_A2525 NC_011080.1 2450552 2452072 D identified by match to protein family HMM PF03606; hypothetical protein 2450552..2452072 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041602.1 CDS SNSL254_A2526 NC_011080.1 2452121 2453074 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase domain-containing protein complement(2452121..2453074) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041603.1 CDS SNSL254_A2527 NC_011080.1 2453067 2453897 R identified by match to protein family HMM PF00456; transketolase domain-containing protein complement(2453067..2453897) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041604.1 CDS ulaA NC_011080.1 2453894 2455285 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2453894..2455285) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041605.1 CDS SNSL254_A2529 NC_011080.1 2455306 2455578 R identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB complement(2455306..2455578) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041606.1 CDS SNSL254_A2531 NC_011080.1 2455659 2456102 R identified by match to protein family HMM PF00359; PTS system mannitol-specific transporter subunit IIA cryptic complement(2455659..2456102) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041607.1 CDS SNSL254_A2530 NC_011080.1 2456101 2456274 D identified by glimmer; hypothetical protein 2456101..2456274 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041608.1 CDS SNSL254_A2532 NC_011080.1 2456355 2457374 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI 2456355..2457374 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041609.1 CDS SNSL254_A2533 NC_011080.1 2457380 2457934 R identified by match to protein family HMM PF00293; nudix hydrolase 3 complement(2457380..2457934) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041610.1 CDS SNSL254_A2534 NC_011080.1 2457991 2458542 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase complement(2457991..2458542) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041611.1 CDS SNSL254_A2535 NC_011080.1 2458598 2459242 R identified by match to protein family HMM PF02798; glutathione S-transferase domain-containing protein complement(2458598..2459242) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041612.1 CDS SNSL254_A2536 NC_011080.1 2459385 2460032 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 2459385..2460032 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041613.1 CDS SNSL254_A2537 NC_011080.1 2460158 2461051 D identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM PF08338; match to protein family HMM TIGR01777; hypothetical protein 2460158..2461051 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041614.1 CDS hisP NC_011080.1 2461103 2461876 R identified by match to protein family HMM PF00005; histidine/lysine/arginine/ornithine transporter subunit complement(2461103..2461876) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041615.1 CDS hisM NC_011080.1 2461890 2462597 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisM complement(2461890..2462597) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041616.1 CDS hisQ NC_011080.1 2462594 2463280 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisQ complement(2462594..2463280) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041617.1 CDS SNSL254_A2541 NC_011080.1 2463461 2464243 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein complement(2463461..2464243) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041618.1 CDS SNSL254_A2542 NC_011080.1 2464481 2465263 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein complement(2464481..2465263) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041619.1 CDS SNSL254_A2543 NC_011080.1 2465341 2465463 D hypothetical protein 2465341..2465463 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041620.1 CDS SNSL254_A2544 NC_011080.1 2465552 2466121 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2465552..2466121) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041621.1 CDS SNSL254_A2545 NC_011080.1 2466148 2467554 R identified by match to protein family HMM PF00324; amino acid transporter complement(2466148..2467554) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041622.1 CDS SNSL254_A2546 NC_011080.1 2467618 2468721 R identified by match to protein family HMM PF01168; amino acid racemase complement(2467618..2468721) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041623.1 CDS SNSL254_A2547 NC_011080.1 2468723 2470144 R identified by match to protein family HMM PF00324; amino acid transporter complement(2468723..2470144) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041624.1 CDS SNSL254_A2548 NC_011080.1 2470235 2471632 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase complement(2470235..2471632) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041625.1 CDS SNSL254_A2549 NC_011080.1 2471843 2473270 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229; regulatory protein 2471843..2473270 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041626.1 CDS purF NC_011080.1 2473306 2474823 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2473306..2474823) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041627.1 CDS cvpA NC_011080.1 2474861 2475349 R membrane protein required for colicin V production; colicin V production protein complement(2474861..2475349) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041628.1 CDS SNSL254_A2552 NC_011080.1 2475660 2476334 R identified by match to protein family HMM PF05036; hypothetical protein complement(2475660..2476334) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041629.1 CDS folC NC_011080.1 2476324 2477592 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(2476324..2477592) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041630.1 CDS accD NC_011080.1 2477660 2478574 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(2477660..2478574) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041631.1 CDS SNSL254_A2555 NC_011080.1 2478724 2479383 R identified by match to protein family HMM PF09335; hypothetical protein complement(2478724..2479383) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041632.1 CDS truA NC_011080.1 2479432 2480244 R 'mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability'; tRNA pseudouridine synthase A complement(2479432..2480244) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041633.1 CDS SNSL254_A2557 NC_011080.1 2480244 2481257 R identified by match to protein family HMM PF01118; match to protein family HMM PF02774; semialdehyde dehydrogenase complement(2480244..2481257) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041634.1 CDS pdxB NC_011080.1 2481325 2482461 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; erythronate-4-phosphate dehydrogenase complement(2481325..2482461) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041635.1 CDS flk NC_011080.1 2482565 2483566 D in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2482565..2483566 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041636.1 CDS SNSL254_A2561 NC_011080.1 2483563 2484741 R identified by match to protein family HMM PF07690; hypothetical protein complement(2483563..2484741) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041637.1 CDS SNSL254_A2560 NC_011080.1 2484740 2484856 D identified by glimmer; hypothetical protein 2484740..2484856 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041638.1 CDS SNSL254_A2562 NC_011080.1 2484921 2485295 R hypothetical protein complement(2484921..2485295) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041639.1 CDS SNSL254_A2563 NC_011080.1 2485468 2485716 D maltose metabolism regulator 2485468..2485716 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041640.1 CDS SNSL254_A2564 NC_011080.1 2485885 2486253 D hypothetical protein 2485885..2486253 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041641.1 CDS SNSL254_A2565 NC_011080.1 2486253 2486771 D hypothetical protein 2486253..2486771 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041642.1 CDS SNSL254_A2566 NC_011080.1 2486838 2487449 R identified by match to protein family HMM PF02517; hypothetical protein complement(2486838..2487449) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041643.1 CDS SNSL254_A2567 NC_011080.1 2487592 2488806 R 'FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP'; 3-oxoacyl-ACP synthase complement(2487592..2488806) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041644.1 CDS mnmC NC_011080.1 2488966 2490966 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2488966..2490966 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041645.1 CDS SNSL254_A2569 NC_011080.1 2491018 2491293 R identified by match to protein family HMM PF08891; hypothetical protein complement(2491018..2491293) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041646.1 CDS SNSL254_A2570 NC_011080.1 2491326 2491874 R identified by match to protein family HMM PF04315; hypothetical protein complement(2491326..2491874) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041647.1 CDS SNSL254_A2571 NC_011080.1 2491874 2492683 R identified by match to protein family HMM PF01925; hypothetical protein complement(2491874..2492683) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041648.1 CDS mepA NC_011080.1 2492683 2493507 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(2492683..2493507) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041649.1 CDS aroC NC_011080.1 2493511 2494596 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2493511..2494596) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083635.1 CDS prmB NC_011080.1 2494632 2495564 R 50S subunit L3 protein glutamine methyltransferase complement(2494632..2495564) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041650.1 CDS SNSL254_A2575 NC_011080.1 2495730 2496281 D identified by match to protein family HMM PF01713; hypothetical protein 2495730..2496281 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041651.1 CDS sixA NC_011080.1 2496381 2496866 R identified by match to protein family HMM TIGR00249; phosphohistidine phosphatase complement(2496381..2496866) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041652.1 CDS fadJ NC_011080.1 2497075 2499222 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(2497075..2499222) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041653.1 CDS fadI NC_011080.1 2499222 2500532 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(2499222..2500532) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041654.1 CDS SNSL254_A2579 NC_011080.1 2500710 2500994 R identified by match to protein family HMM PF04175; match to protein family HMM TIGR00743; hypothetical protein complement(2500710..2500994) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041655.1 CDS SNSL254_A2580 NC_011080.1 2501365 2502672 D identified by match to protein family HMM PF03349; long-chain fatty acid outer membrane transporter 2501365..2502672 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041656.1 CDS SNSL254_A2581 NC_011080.1 2502733 2503488 R identified by match to protein family HMM PF04333; lipoprotein VacJ family complement(2502733..2503488) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041657.1 CDS SNSL254_A2582 NC_011080.1 2503777 2504718 D hypothetical protein 2503777..2504718 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041658.1 CDS SNSL254_A2584 NC_011080.1 2505025 2505963 R outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease complement(2505025..2505963) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041659.1 CDS SNSL254_A2585 NC_011080.1 2506231 2507478 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; phosphoglycerate transport system transcriptional regulator PgtA complement(2506231..2507478) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041660.1 CDS SNSL254_A2586 NC_011080.1 2507468 2509474 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; phosphoglycerate transport system sensor protein PgtB complement(2507468..2509474) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041661.1 CDS SNSL254_A2587 NC_011080.1 2509471 2510781 R phosphoglycerate transport: protein for signal transmission complement(2509471..2510781) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041662.1 CDS SNSL254_A2588 NC_011080.1 2511100 2512491 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00881; phosphoglycerate transport: transporter 2511100..2512491 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041663.1 CDS SNSL254_A2589 NC_011080.1 2512730 2512972 R hypothetical protein complement(2512730..2512972) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041664.1 CDS SNSL254_A2590 NC_011080.1 2513133 2513246 R identified by glimmer; hypothetical protein complement(2513133..2513246) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083636.1 CDS SNSL254_A2591 NC_011080.1 2513494 2514414 D lipid A biosynthesis lauroyl acyltransferase 2513494..2514414 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041666.1 CDS SNSL254_A2593 NC_011080.1 2514938 2516176 R identified by match to protein family HMM PF00155; aminotransferase complement(2514938..2516176) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041667.1 CDS SNSL254_A2594 NC_011080.1 2516518 2516664 R identified by glimmer; hypothetical protein complement(2516518..2516664) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041668.1 CDS glk NC_011080.1 2516897 2517862 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase complement(2516897..2517862) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041669.1 CDS SNSL254_A2596 NC_011080.1 2518066 2519301 D identified by match to protein family HMM PF00654; hypothetical protein 2518066..2519301 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041670.1 CDS SNSL254_A2597 NC_011080.1 2519321 2520973 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase complement(2519321..2520973) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041671.1 CDS SNSL254_A2598 NC_011080.1 2521153 2522151 D identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 2521153..2522151 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041672.1 CDS SNSL254_A2599 NC_011080.1 2522265 2522591 D hypothetical protein 2522265..2522591 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041673.2 CDS SNSL254_A2600 NC_011080.1 2522652 2523893 R identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH complement(2522652..2523893) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041674.1 CDS nupC NC_011080.1 2524236 2525438 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; nucleoside transporter NupC 2524236..2525438 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041675.1 CDS SNSL254_A2602 NC_011080.1 2525491 2527680 R identified by match to protein family HMM PF00563; match to protein family HMM PF05231; diguanylate cyclase complement(2525491..2527680) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041676.1 CDS SNSL254_A2605 NC_011080.1 2528301 2528648 D identified by match to protein family HMM PF07037; hypothetical protein 2528301..2528648 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041677.1 CDS SNSL254_A2606 NC_011080.1 2528650 2529042 D identified by match to protein family HMM PF07037; hypothetical protein 2528650..2529042 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041678.1 CDS gltX NC_011080.1 2529096 2530511 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2529096..2530511) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041679.1 CDS SNSL254_A2612 NC_011080.1 2531431 2532315 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional activator XapR complement(2531431..2532315) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041680.1 CDS SNSL254_A2613 NC_011080.1 2532367 2532525 R identified by match to protein family HMM TIGR03510; hypothetical protein complement(2532367..2532525) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041681.1 CDS nupG NC_011080.1 2532584 2533840 R identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside permease NupG complement(2532584..2533840) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041682.1 CDS xapA NC_011080.1 2533895 2534728 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(2533895..2534728) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041683.1 CDS SNSL254_A2616 NC_011080.1 2534984 2535745 D identified by match to protein family HMM PF07135; hypothetical protein 2534984..2535745 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041684.1 CDS SNSL254_A2617 NC_011080.1 2535807 2536733 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; OsmT protein complement(2535807..2536733) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041685.1 CDS SNSL254_A2618 NC_011080.1 2536823 2537821 D identified by match to protein family HMM PF01758; bile acid/Na+ symporter family protein 2536823..2537821 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041686.1 CDS SNSL254_A2619 NC_011080.1 2537818 2538036 R hypothetical protein complement(2537818..2538036) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041687.1 CDS ligA NC_011080.1 2538038 2540053 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2538038..2540053) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041688.1 CDS zipA NC_011080.1 2540125 2541111 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(2540125..2541111) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041689.2 CDS SNSL254_A2622 NC_011080.1 2541343 2542104 D role in sulfur assimilation; sulfate transport protein CysZ 2541343..2542104 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041690.1 CDS cysK NC_011080.1 2542268 2543239 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2542268..2543239 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041691.1 CDS SNSL254_A2624 NC_011080.1 2543358 2543483 R hypothetical protein complement(2543358..2543483) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041692.1 CDS ptsH NC_011080.1 2543623 2543880 D identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2543623..2543880 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041693.1 CDS ptsI NC_011080.1 2543929 2545656 D 'Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system'; phosphoenolpyruvate-protein phosphotransferase 2543929..2545656 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041694.1 CDS crr NC_011080.1 2545697 2546206 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2545697..2546206 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041695.1 CDS SNSL254_A2628 NC_011080.1 2546356 2546595 R hypothetical protein complement(2546356..2546595) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041696.1 CDS pdxK NC_011080.1 2546592 2547458 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase complement(2546592..2547458) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041697.1 CDS SNSL254_A2630 NC_011080.1 2547541 2548833 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2547541..2548833 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041698.1 CDS SNSL254_A2631 NC_011080.1 2548848 2549567 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2548848..2549567 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041699.1 CDS SNSL254_A2632 NC_011080.1 2549626 2550006 D hypothetical protein 2549626..2550006 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041700.1 CDS SNSL254_A2633 NC_011080.1 2550019 2550558 D membrane carboxypeptidase 2550019..2550558 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041701.1 CDS cysM NC_011080.1 2550689 2551600 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(2550689..2551600) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041702.1 CDS cysA NC_011080.1 2551668 2552765 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968; sulfate/thiosulfate transporter subunit complement(2551668..2552765) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041703.1 CDS cysW NC_011080.1 2552755 2553630 R Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit complement(2552755..2553630) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041704.1 CDS cysT NC_011080.1 2553630 2554463 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate/thiosulfate transporter subunit complement(2553630..2554463) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041705.1 CDS cysP NC_011080.1 2554463 2555479 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; thiosulfate transporter subunit complement(2554463..2555479) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041706.1 CDS ucpA NC_011080.1 2555637 2556428 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; short chain dehydrogenase complement(2555637..2556428) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041707.1 CDS SNSL254_A2640 NC_011080.1 2556676 2557575 R identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413; dyp-type peroxidase family protein complement(2556676..2557575) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041708.1 CDS SNSL254_A2641 NC_011080.1 2557670 2558245 R identified by match to protein family HMM PF06572; hypothetical protein complement(2557670..2558245) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041709.1 CDS SNSL254_A2642 NC_011080.1 2558307 2558756 R hypothetical protein complement(2558307..2558756) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041710.1 CDS SNSL254_A2643 NC_011080.1 2558743 2559168 R identified by match to protein family HMM PF00583; acetyltransferase complement(2558743..2559168) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041711.1 CDS amiA NC_011080.1 2559381 2560250 D identified by match to protein family HMM PF01520; match to protein family HMM TIGR01409; N-acetylmuramoyl-l-alanine amidase I 2559381..2560250 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041712.1 CDS hemF NC_011080.1 2560253 2561152 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2560253..2561152 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041713.1 CDS SNSL254_A2646 NC_011080.1 2561179 2561850 D identified by glimmer; hypothetical protein 2561179..2561850 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041714.1 CDS SNSL254_A2647 NC_011080.1 2562112 2563164 R activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR complement(2562112..2563164) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041715.1 CDS SNSL254_A2648 NC_011080.1 2563212 2563706 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutK complement(2563212..2563706) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041716.1 CDS SNSL254_A2649 NC_011080.1 2563719 2564378 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutL complement(2563719..2564378) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041717.1 CDS eutC NC_011080.1 2564388 2565284 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(2564388..2565284) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041718.1 CDS eutB NC_011080.1 2565303 2566664 R identified by match to protein family HMM PF06751; ethanolamine ammonia-lyase large subunit complement(2565303..2566664) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041719.1 CDS eutA NC_011080.1 2566676 2568079 R ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase complement(2566676..2568079) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041720.1 CDS eutH NC_011080.1 2568076 2569302 R identified by match to protein family HMM PF04346; ethanolamine utilization protein EutH complement(2568076..2569302) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041721.1 CDS SNSL254_A2654 NC_011080.1 2569422 2570609 R identified by match to protein family HMM PF00465; ethanolamine utilization protein EutG complement(2569422..2570609) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041722.1 CDS eutJ NC_011080.1 2570599 2571438 R identified by match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ complement(2570599..2571438) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041723.1 CDS eutE NC_011080.1 2571449 2572852 R identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE complement(2571449..2572852) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041724.1 CDS eutN NC_011080.1 2572864 2573151 R identified by match to protein family HMM PF03319; ethanolamine utilization protein complement(2572864..2573151) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083637.1 CDS SNSL254_A2658 NC_011080.1 2573264 2573554 R ethanolamine utilization protein EutM complement(2573264..2573554) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041725.1 CDS eutD NC_011080.1 2573595 2574611 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(2573595..2574611) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041726.1 CDS eutT NC_011080.1 2574608 2575411 R identified by match to protein family HMM PF01923; ethanolamine utilization cobalamin adenosyltransferase complement(2574608..2575411) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041727.1 CDS SNSL254_A2661 NC_011080.1 2575408 2576097 R identified by match to protein family HMM PF05899; match to protein family HMM PF06249; ethanolamine utilization protein EutQ complement(2575408..2576097) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041728.1 CDS eutP NC_011080.1 2576075 2576554 R identified by match to protein family HMM TIGR02528; ethanolamine utilization protein EutP complement(2576075..2576554) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041729.1 CDS SNSL254_A2663 NC_011080.1 2576567 2576902 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS complement(2576567..2576902) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041730.1 CDS SNSL254_A2664 NC_011080.1 2577320 2579599 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(2577320..2579599) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041731.1 CDS SNSL254_A2665 NC_011080.1 2579604 2579801 D hypothetical protein 2579604..2579801 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041732.1 CDS tal1 NC_011080.1 2579871 2580821 D identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase A 2579871..2580821 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041733.1 CDS tkt NC_011080.1 2580841 2582841 D 'catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase'; transketolase 2580841..2582841 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041734.1 CDS SNSL254_A2668 NC_011080.1 2582904 2583134 R hypothetical protein complement(2582904..2583134) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041735.1 CDS SNSL254_A2669 NC_011080.1 2583262 2584305 R identified by match to protein family HMM PF06674; hypothetical protein complement(2583262..2584305) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041736.1 CDS SNSL254_A2670 NC_011080.1 2584430 2585005 R identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; hydrolase YffH complement(2584430..2585005) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041737.1 CDS SNSL254_A2671 NC_011080.1 2585209 2586507 D identified by match to protein family HMM PF00144; hypothetical protein 2585209..2586507 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041738.1 CDS SNSL254_A2672 NC_011080.1 2586956 2588917 R 'unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic)'; oxidoreductase Fe-S binding subunit complement(2586956..2588917) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041739.1 CDS SNSL254_A2673 NC_011080.1 2589103 2590803 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarQ 2589103..2590803 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041740.1 CDS acrD NC_011080.1 2590988 2594101 D identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; aminoglycoside/multidrug efflux system 2590988..2594101 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041741.1 CDS SNSL254_A2675 NC_011080.1 2594675 2595031 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 2594675..2595031 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041742.1 CDS dapE NC_011080.1 2595035 2596162 D 'dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.'; succinyl-diaminopimelate desuccinylase 2595035..2596162 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041743.1 CDS SNSL254_A2677 NC_011080.1 2596190 2596390 D hypothetical protein 2596190..2596390 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041744.1 CDS SNSL254_A2678 NC_011080.1 2596417 2598435 R identified by match to protein family HMM PF00583; match to protein family HMM PF05127; acetyltransferase complement(2596417..2598435) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041745.1 CDS SNSL254_A2679 NC_011080.1 2598451 2599314 R identified by match to protein family HMM PF04228; zinc protease complement(2598451..2599314) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041746.1 CDS purC NC_011080.1 2599445 2600158 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(2599445..2600158) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041747.1 CDS SNSL254_A2681 NC_011080.1 2600333 2601367 R identified by match to protein family HMM PF06804; lipoprotein complement(2600333..2601367) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041748.1 CDS dapA NC_011080.1 2601384 2602262 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2601384..2602262) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041749.1 CDS gcvR NC_011080.1 2602408 2602980 D negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2602408..2602980 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041750.1 CDS bcp NC_011080.1 2602980 2603450 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2602980..2603450 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041751.1 CDS SNSL254_A2685 NC_011080.1 2603497 2604636 R identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase complement(2603497..2604636) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041752.1 CDS SNSL254_A2686 NC_011080.1 2604642 2605910 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; gluconate transporter complement(2604642..2605910) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041753.1 CDS SNSL254_A2687 NC_011080.1 2605978 2607141 R identified by match to protein family HMM PF05651; transcriptional regulator CdaR complement(2605978..2607141) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041754.1 CDS SNSL254_A2688 NC_011080.1 2607441 2608508 R identified by match to protein family HMM PF01594; permease PerM complement(2607441..2608508) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041755.1 CDS SNSL254_A2689 NC_011080.1 2608716 2610179 D identified by match to protein family HMM PF01435; TPR repeat-containing protein YfgC 2608716..2610179 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041756.1 CDS arsC NC_011080.1 2610219 2610578 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 2610219..2610578 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041757.1 CDS hda NC_011080.1 2610605 2611330 R 'controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP'; DNA replication initiation factor complement(2610605..2611330) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041758.1 CDS uraA NC_011080.1 2611401 2612690 R identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil transporter complement(2611401..2612690) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041759.1 CDS upp NC_011080.1 2612778 2613404 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2612778..2613404) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041760.1 CDS SNSL254_A2694 NC_011080.1 2613639 2613782 D identified by glimmer; hypothetical protein 2613639..2613782 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041761.1 CDS purM NC_011080.1 2613803 2614855 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2613803..2614855 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041762.1 CDS purN NC_011080.1 2614855 2615493 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2614855..2615493 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041763.1 CDS ppk NC_011080.1 2615682 2617748 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2615682..2617748 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041764.1 CDS SNSL254_A2698 NC_011080.1 2617714 2619294 D identified by match to protein family HMM PF02541; exopolyphosphatase 2617714..2619294 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041765.1 CDS SNSL254_A2699 NC_011080.1 2619330 2621543 R identified by match to protein family HMM PF00563; match to protein family HMM PF05231; hypothetical protein complement(2619330..2621543) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041766.1 CDS SNSL254_A2700 NC_011080.1 2622004 2622147 D hypothetical protein 2622004..2622147 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041767.1 CDS SNSL254_A2701 NC_011080.1 2622512 2622703 D hypothetical protein 2622512..2622703 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041768.1 CDS SNSL254_A2702 NC_011080.1 2623037 2623390 R transposase B complement(2623037..2623390) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041769.1 CDS guaA NC_011080.1 2623547 2625124 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2623547..2625124) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041770.1 CDS guaB NC_011080.1 2625194 2626660 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2625194..2626660) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041771.1 CDS xseA NC_011080.1 2626821 2628170 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2626821..2628170 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083638.1 CDS SNSL254_A2706 NC_011080.1 2628332 2633863 R AIDA autotransporter complement(2628332..2633863) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083639.1 CDS SNSL254_A2707 NC_011080.1 2634442 2641749 R membrane protein complement(2634442..2641749) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041772.1 CDS SNSL254_A2708 NC_011080.1 2641915 2647494 R identified by match to protein family HMM PF05688; match to protein family HMM PF05689; hypothetical protein complement(2641915..2647494) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041773.1 CDS SNSL254_A2710 NC_011080.1 2647632 2648594 R hypothetical protein complement(2647632..2648594) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041774.1 CDS SNSL254_A2709 NC_011080.1 2648549 2648671 D identified by glimmer; hypothetical protein 2648549..2648671 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041775.1 CDS SNSL254_A2711 NC_011080.1 2648652 2650844 R hypothetical protein complement(2648652..2650844) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041776.1 CDS SNSL254_A2712 NC_011080.1 2651190 2651411 R identified by match to protein family HMM PF07191; hypothetical protein complement(2651190..2651411) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041777.1 CDS engA NC_011080.1 2651500 2652972 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2651500..2652972) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041778.1 CDS SNSL254_A2714 NC_011080.1 2653091 2654269 R 'with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis'; outer membrane protein assembly complex subunit YfgL complement(2653091..2654269) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041779.1 CDS SNSL254_A2715 NC_011080.1 2654280 2654900 R hypothetical protein complement(2654280..2654900) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041780.1 CDS hisS NC_011080.1 2654914 2656188 R 'catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG'; histidyl-tRNA synthetase complement(2654914..2656188) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041781.1 CDS ispG NC_011080.1 2656299 2657417 R 'catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis'; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2656299..2657417) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041782.1 CDS SNSL254_A2719 NC_011080.1 2657444 2658454 R identified by match to protein family HMM PF01381; cytoskeletal protein RodZ complement(2657444..2658454) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041783.1 CDS SNSL254_A2720 NC_011080.1 2658746 2659912 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(2658746..2659912) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041784.1 CDS ndk NC_011080.1 2660119 2660550 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2660119..2660550) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041785.1 CDS SNSL254_A2722 NC_011080.1 2660671 2661534 R identified by match to protein family HMM PF00037; polyferredoxin complement(2660671..2661534) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041786.1 CDS SNSL254_A2723 NC_011080.1 2661534 2662343 R dimethylsulfoxide reductase complement(2661534..2662343) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041787.1 CDS dmsB NC_011080.1 2662336 2662965 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B complement(2662336..2662965) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041788.1 CDS SNSL254_A2725 NC_011080.1 2662962 2665340 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A complement(2662962..2665340) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041789.1 CDS pbpC NC_011080.1 2665496 2667811 R penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C complement(2665496..2667811) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041790.1 CDS SNSL254_A2727 NC_011080.1 2667812 2672746 R identified by match to protein family HMM PF01835; match to protein family HMM PF07703; hypothetical protein complement(2667812..2672746) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041791.1 CDS sseA NC_011080.1 2672955 2673797 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2672955..2673797 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041793.1 CDS SNSL254_A2731 NC_011080.1 2673934 2674056 R identified by glimmer; hypothetical protein complement(2673934..2674056) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041794.1 CDS SNSL254_A2730 NC_011080.1 2674044 2674712 D hypothetical protein 2674044..2674712 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041796.1 CDS sseB NC_011080.1 2675281 2676027 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB complement(2675281..2676027) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041797.1 CDS SNSL254_A2735 NC_011080.1 2676167 2677450 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase complement(2676167..2677450) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041798.1 CDS iscX NC_011080.1 2677697 2677897 R identified by match to protein family HMM PF04384; match to protein family HMM TIGR03412; hypothetical protein complement(2677697..2677897) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041799.1 CDS fdx NC_011080.1 2677909 2678244 R identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007; ferredoxin, 2Fe-2S type, ISC system complement(2677909..2678244) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041800.1 CDS hscA NC_011080.1 2678246 2680096 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2678246..2680096) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041801.1 CDS hscB NC_011080.1 2680109 2680624 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(2680109..2680624) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041802.1 CDS iscA NC_011080.1 2680820 2681143 R forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein complement(2680820..2681143) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041803.1 CDS iscU NC_011080.1 2681172 2681558 R identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein complement(2681172..2681558) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041804.1 CDS iscS NC_011080.1 2681586 2682800 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(2681586..2682800) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041806.1 CDS iscR NC_011080.1 2682981 2683475 R regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR complement(2682981..2683475) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041807.1 CDS SNSL254_A2745 NC_011080.1 2683635 2684366 R identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase complement(2683635..2684366) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041808.1 CDS suhB NC_011080.1 2684485 2685288 D identified by match to protein family HMM PF00459; inositol monophosphatase 2684485..2685288 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041809.1 CDS SNSL254_A2747 NC_011080.1 2685433 2686311 D hypothetical protein 2685433..2686311 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041810.1 CDS asrA NC_011080.1 2686493 2687536 D identified by match to protein family HMM TIGR02910; sulfite reductase subunit A 2686493..2687536 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041811.1 CDS asrB NC_011080.1 2687540 2688358 D with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2687540..2688358 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041812.1 CDS asrC NC_011080.1 2688369 2689382 D identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; sulfite reductase subunit C 2688369..2689382 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041813.1 CDS SNSL254_A2751 NC_011080.1 2689383 2690369 R identified by match to protein family HMM PF03824; high-affinity nickel-transporter complement(2689383..2690369) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041814.1 CDS SNSL254_A2752 NC_011080.1 2690360 2691028 R identified by match to protein family HMM PF06226; hypothetical protein complement(2690360..2691028) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041815.1 CDS SNSL254_A2753 NC_011080.1 2691124 2692401 D identified by match to protein family HMM PF00874; stationary phase inducible protein CsiE 2691124..2692401 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041816.1 CDS SNSL254_A2754 NC_011080.1 2692396 2693535 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter complement(2692396..2693535) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041817.1 CDS glyA NC_011080.1 2693731 2694984 R 'catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate'; serine hydroxymethyltransferase complement(2693731..2694984) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041818.1 CDS SNSL254_A2756 NC_011080.1 2695122 2695268 R hypothetical protein complement(2695122..2695268) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041819.1 CDS hmp NC_011080.1 2695309 2696499 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2695309..2696499 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041820.1 CDS SNSL254_A2758 NC_011080.1 2696681 2698225 D regulates the cadBA operon; DNA-binding transcriptional activator CadC 2696681..2698225 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041821.1 CDS cadB NC_011080.1 2698586 2699917 D antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2698586..2699917 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041822.1 CDS SNSL254_A2760 NC_011080.1 2700000 2702144 D identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 2700000..2702144 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041823.1 CDS SNSL254_A2761 NC_011080.1 2702200 2703660 D identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH 2702200..2703660 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041824.1 CDS SNSL254_A2762 NC_011080.1 2703709 2704047 R 'indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA'; nitrogen regulatory protein P-II 1 complement(2703709..2704047) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041825.1 CDS SNSL254_A2763 NC_011080.1 2704124 2705461 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728; transcriptional regulator ZraR complement(2704124..2705461) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041826.2 CDS SNSL254_A2764 NC_011080.1 2705458 2706222 R hypothetical protein complement(2705458..2706222) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083640.1 CDS SNSL254_A2765 NC_011080.1 2706224 2707666 R sensor kinase complement(2706224..2707666) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041828.1 CDS purL NC_011080.1 2708304 2712191 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2708304..2712191) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041830.1 CDS SNSL254_A2770 NC_011080.1 2712447 2713991 D 'YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function'; transglycosylase 2712447..2713991 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041831.1 CDS SNSL254_A2771 NC_011080.1 2714042 2714560 R identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase complement(2714042..2714560) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041832.1 CDS yfhB NC_011080.1 2714618 2715253 R identified by match to protein family HMM TIGR01545; hypothetical protein complement(2714618..2715253) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041833.1 CDS SNSL254_A2773 NC_011080.1 2715257 2716618 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system transporter subunit IIC complement(2715257..2716618) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041834.1 CDS murQ NC_011080.1 2716629 2717522 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(2716629..2717522) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041835.1 CDS SNSL254_A2775 NC_011080.1 2717638 2718486 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; DNA-binding transcriptional regulator 2717638..2718486 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041836.1 CDS panE NC_011080.1 2718525 2719442 R identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase complement(2718525..2719442) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041837.1 CDS SNSL254_A2777 NC_011080.1 2719464 2720660 R identified by match to protein family HMM PF07690; major facilitator family transporter protein complement(2719464..2720660) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041838.1 CDS SNSL254_A2778 NC_011080.1 2720776 2721702 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2720776..2721702 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041839.1 CDS SNSL254_A2779 NC_011080.1 2721740 2722000 D identified by match to protein family HMM PF00037; ferredoxin 2721740..2722000 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041840.1 CDS acpS NC_011080.1 2722112 2722492 R 'Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids'; 4'-phosphopantetheinyl transferase complement(2722112..2722492) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041841.1 CDS pdxJ NC_011080.1 2722492 2723223 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2722492..2723223) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041842.1 CDS recO NC_011080.1 2723235 2723963 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2723235..2723963) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041843.1 CDS era NC_011080.1 2723975 2724880 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2723975..2724880) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041844.1 CDS rnc NC_011080.1 2724877 2725614 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(2724877..2725614) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041845.1 CDS lepB NC_011080.1 2725831 2726805 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I complement(2725831..2726805) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041846.1 CDS lepA NC_011080.1 2726822 2728621 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2726822..2728621) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041847.1 CDS SNSL254_A2788 NC_011080.1 2729050 2730519 D leucine-rich repeat protein 2729050..2730519 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041848.1 CDS SNSL254_A2789 NC_011080.1 2730723 2730854 R identified by glimmer; hypothetical protein complement(2730723..2730854) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041849.1 CDS SNSL254_A2791 NC_011080.1 2731854 2731973 R integrase, catalytic region complement(2731854..2731973) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041850.1 CDS SNSL254_A2792 NC_011080.1 2733369 2733947 R identified by match to protein family HMM PF02413; phage tail assembly protein complement(2733369..2733947) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041851.1 CDS SNSL254_A2793 NC_011080.1 2733937 2734761 R identified by match to protein family HMM PF01661; appr-1-p processing enzyme family protein complement(2733937..2734761) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041852.1 CDS SNSL254_A2794 NC_011080.1 2734758 2737130 R identified by match to protein family HMM PF03406; match to protein family HMM PF07484; match to protein family HMM PF08400; side tail fiber protein complement(2734758..2737130) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041853.1 CDS SNSL254_A2795 NC_011080.1 2737184 2737426 R hypothetical protein complement(2737184..2737426) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041854.1 CDS SNSL254_A2796 NC_011080.1 2737465 2740827 R identified by match to protein family HMM PF00041; match to protein family HMM PF09327; host specificity protein complement(2737465..2740827) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041855.2 CDS SNSL254_A2797 NC_011080.1 2740889 2741497 R identified by match to protein family HMM PF06805; bacteriophage lambda tail assembly protein I complement(2740889..2741497) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041856.1 CDS SNSL254_A2799 NC_011080.1 2742178 2742876 R identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600; phage minor tail protein L complement(2742178..2742876) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041857.1 CDS SNSL254_A2800 NC_011080.1 2742886 2743215 R identified by match to protein family HMM PF05939; phage minor tail protein complement(2742886..2743215) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041858.1 CDS SNSL254_A2801 NC_011080.1 2743218 2746313 R identified by match to protein family HMM PF06791; match to protein family HMM PF09718; match to protein family HMM TIGR01541; gifsy-1 prophage VmtH complement(2743218..2746313) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041859.1 CDS SNSL254_A2802 NC_011080.1 2746285 2746557 R identified by match to protein family HMM PF06223; match to protein family HMM TIGR01715; phage tail assembly protein T complement(2746285..2746557) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041860.1 CDS SNSL254_A2803 NC_011080.1 2746620 2747015 R identified by match to protein family HMM PF06894; match to protein family HMM TIGR01674; phage minor tail protein G complement(2746620..2747015) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041861.1 CDS SNSL254_A2804 NC_011080.1 2747066 2747809 R identified by match to protein family HMM PF02368; gifsy-1 prophage VmtV complement(2747066..2747809) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041862.1 CDS SNSL254_A2806 NC_011080.1 2747820 2748221 R identified by match to protein family HMM PF06141; phage minor tail protein U complement(2747820..2748221) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041863.1 CDS SNSL254_A2805 NC_011080.1 2748210 2749460 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; peyer'S patch-specific virulence factor GipA 2748210..2749460 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041864.1 CDS SNSL254_A2807 NC_011080.1 2749509 2750087 R identified by match to protein family HMM PF06763; prophage minor tail protein Z complement(2749509..2750087) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041865.1 CDS SNSL254_A2808 NC_011080.1 2750115 2750498 R identified by match to protein family HMM PF05354; phage Head-Tail Attachment complement(2750115..2750498) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041866.1 CDS SNSL254_A2809 NC_011080.1 2750509 2750868 R gifsy-1 prophage DNA packaging protein gp9 complement(2750509..2750868) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041867.1 CDS SNSL254_A2810 NC_011080.1 2750926 2751954 R identified by match to protein family HMM PF03864; phage major capsid protein E complement(2750926..2751954) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041868.1 CDS SNSL254_A2811 NC_011080.1 2752009 2752356 R identified by match to protein family HMM PF02924; bacteriophage lambda head decoration protein D complement(2752009..2752356) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041869.1 CDS SNSL254_A2812 NC_011080.1 2752369 2753865 R identified by match to protein family HMM PF01343; gifsy-1 prophage head-tail preconnector gp5 complement(2752369..2753865) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041870.1 CDS SNSL254_A2813 NC_011080.1 2753855 2755435 R identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; phage portal protein lambda family complement(2753855..2755435) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041871.1 CDS SNSL254_A2814 NC_011080.1 2755432 2755635 R identified by match to protein family HMM PF02831; gpW complement(2755432..2755635) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041872.1 CDS SNSL254_A2815 NC_011080.1 2755619 2757550 R identified by match to protein family HMM PF05876; phage terminase large subunit complement(2755619..2757550) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041873.1 CDS SNSL254_A2816 NC_011080.1 2757522 2758067 R identified by match to protein family HMM PF07471; Gifsy-1 prophage DNA packaging protein complement(2757522..2758067) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041874.1 CDS SNSL254_A2817 NC_011080.1 2758354 2758755 D identified by match to protein family HMM PF04151; pre-peptidase domain-containing protein 2758354..2758755 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041875.1 CDS SNSL254_A2818 NC_011080.1 2758991 2759443 R identified by match to protein family HMM PF03245; bacteriophage lysis protein complement(2758991..2759443) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041876.1 CDS SNSL254_A2819 NC_011080.1 2759461 2759910 R identified by match to protein family HMM PF00959; phage lysozyme complement(2759461..2759910) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041877.1 CDS SNSL254_A2820 NC_011080.1 2759897 2760232 R identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family complement(2759897..2760232) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041878.1 CDS SNSL254_A2821 NC_011080.1 2760502 2761188 D identified by match to protein family HMM PF07108; hypothetical protein 2760502..2761188 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041879.1 CDS SNSL254_A2822 NC_011080.1 2761403 2761591 R identified by glimmer; hypothetical protein complement(2761403..2761591) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041880.1 CDS SNSL254_A2824 NC_011080.1 2762098 2762661 R hypothetical protein complement(2762098..2762661) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041881.1 CDS SNSL254_A2825 NC_011080.1 2762658 2762783 R identified by glimmer; hypothetical protein complement(2762658..2762783) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041882.1 CDS SNSL254_A2826 NC_011080.1 2762934 2763611 R identified by match to protein family HMM PF06323; gifsy-1 prophage RegQ complement(2762934..2763611) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041883.1 CDS SNSL254_A2827 NC_011080.1 2763745 2764356 R identified by match to protein family HMM PF05766; bacteriophage Lambda NinG protein complement(2763745..2764356) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041884.1 CDS SNSL254_A2828 NC_011080.1 2764359 2764565 R hypothetical protein complement(2764359..2764565) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041885.1 CDS SNSL254_A2829 NC_011080.1 2764565 2765167 R identified by match to protein family HMM PF07105; gifsy-2 prophage protein complement(2764565..2765167) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041886.1 CDS SNSL254_A2830 NC_011080.1 2765202 2765318 R bacteriophage protein complement(2765202..2765318) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041887.1 CDS SNSL254_A2831 NC_011080.1 2765567 2765800 R identified by match to protein family HMM PF06183; hypothetical protein complement(2765567..2765800) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041888.1 CDS SNSL254_A2832 NC_011080.1 2766783 2767481 R identified by match to protein family HMM PF04447; hypothetical protein complement(2766783..2767481) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041889.1 CDS SNSL254_A2833 NC_011080.1 2767495 2768190 R identified by match to protein family HMM PF06992; replication P family protein complement(2767495..2768190) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041890.1 CDS SNSL254_A2834 NC_011080.1 2768187 2769071 R identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; replication protein O complement(2768187..2769071) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041891.2 CDS SNSL254_A2835 NC_011080.1 2769163 2769483 R Gifsy-1 prophage cI complement(2769163..2769483) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041892.1 CDS SNSL254_A2836 NC_011080.1 2770293 2771132 D identified by match to protein family HMM PF01656; chromosome partitioning ATPase 2770293..2771132 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041893.2 CDS SNSL254_A2837 NC_011080.1 2771125 2771511 D identified by glimmer; hypothetical protein 2771125..2771511 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041894.2 CDS SNSL254_A2838 NC_011080.1 2771511 2772173 D identified by glimmer; hypothetical protein 2771511..2772173 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041895.1 CDS SNSL254_A2839 NC_011080.1 2772521 2772637 D hypothetical protein 2772521..2772637 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041896.1 CDS SNSL254_A2840 NC_011080.1 2772630 2772788 D hypothetical protein 2772630..2772788 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041897.1 CDS SNSL254_A2841 NC_011080.1 2772873 2773160 D hypothetical protein 2772873..2773160 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041898.1 CDS SNSL254_A2842 NC_011080.1 2773287 2776214 D identified by match to protein family HMM PF06630; gifsy-1 prophage RecE 2773287..2776214 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041899.1 CDS SNSL254_A2843 NC_011080.1 2776225 2777334 D identified by match to protein family HMM PF03837; gifsy-1 prophage protein 2776225..2777334 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041900.1 CDS SNSL254_A2844 NC_011080.1 2777377 2777616 D hypothetical protein 2777377..2777616 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041901.1 CDS SNSL254_A2845 NC_011080.1 2777919 2779148 R identified by match to protein family HMM PF00589; phage integrase family protein complement(2777919..2779148) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041902.1 CDS SNSL254_A2846 NC_011080.1 2779366 2779503 D identified by glimmer; hypothetical protein 2779366..2779503 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041903.1 CDS SNSL254_A2847 NC_011080.1 2779646 2780125 R involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC complement(2779646..2780125) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041904.1 CDS rseB NC_011080.1 2780122 2781078 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(2780122..2781078) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041905.1 CDS rseA NC_011080.1 2781078 2781728 R identified by match to protein family HMM PF03872; match to protein family HMM PF03873; anti-RNA polymerase sigma factor SigE complement(2781078..2781728) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041906.1 CDS rpoE NC_011080.1 2781760 2782335 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(2781760..2782335) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041907.1 CDS SNSL254_A2851 NC_011080.1 2782496 2782675 R identified by glimmer; hypothetical protein complement(2782496..2782675) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041908.1 CDS nadB NC_011080.1 2782760 2784382 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2782760..2784382 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_007419097.1 CDS SNSL254_A2853 NC_011080.1 2784367 2785104 R methyltransferase complement(2784367..2785104) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041910.1 CDS SNSL254_A2855 NC_011080.1 2785234 2786568 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2785234..2786568 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041911.1 CDS SNSL254_A2856 NC_011080.1 2786586 2787485 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein complement(2786586..2787485) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041912.1 CDS SNSL254_A2857 NC_011080.1 2787588 2788175 D identified by match to protein family HMM PF01810; neutral amino-acid efflux protein 2787588..2788175 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041913.1 CDS grcA NC_011080.1 2788237 2788620 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(2788237..2788620) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041914.1 CDS ung NC_011080.1 2788939 2789628 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2788939..2789628 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041915.1 CDS SNSL254_A2860 NC_011080.1 2789744 2790781 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; methyltransferase complement(2789744..2790781) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041916.1 CDS SNSL254_A2861 NC_011080.1 2790985 2791404 D identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068; thioredoxin 2 2790985..2791404 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041917.1 CDS SNSL254_A2862 NC_011080.1 2791477 2792157 D identified by match to protein family HMM PF03942; DTW domain-containing protein 2791477..2792157 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041918.1 CDS SNSL254_A2863 NC_011080.1 2792211 2794871 D identified by match to protein family HMM PF00583; match to protein family HMM PF02629; CoA binding domain/acetyltransferase domain-containing protein 2792211..2794871 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041919.1 CDS pssA NC_011080.1 2794986 2796341 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2794986..2796341 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041920.1 CDS SNSL254_A2865 NC_011080.1 2796386 2796709 D hypothetical protein 2796386..2796709 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041921.1 CDS SNSL254_A2866 NC_011080.1 2796706 2798007 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; alpha-ketoglutarate transporter complement(2796706..2798007) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041922.1 CDS SNSL254_A2867 NC_011080.1 2798111 2798566 R hypothetical protein complement(2798111..2798566) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041923.1 CDS SNSL254_A2868 NC_011080.1 2798814 2798945 D identified by glimmer; hypothetical protein 2798814..2798945 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041924.1 CDS clpB NC_011080.1 2804641 2807214 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; protein disaggregation chaperone complement(2804641..2807214) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041925.1 CDS SNSL254_A2876 NC_011080.1 2807344 2808075 R identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein complement(2807344..2808075) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041926.1 CDS rluD NC_011080.1 2808072 2809052 R 'responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA'; 23S rRNA pseudouridine synthase D complement(2808072..2809052) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041927.1 CDS SNSL254_A2878 NC_011080.1 2809184 2809921 D 'with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline'; outer membrane protein assembly complex subunit YfiO 2809184..2809921 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041928.1 CDS SNSL254_A2879 NC_011080.1 2810193 2810531 D associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2810193..2810531 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041929.1 CDS pheA NC_011080.1 2810782 2811942 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2810782..2811942 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041930.1 CDS SNSL254_A2881 NC_011080.1 2811903 2812811 R identified by match to protein family HMM PF08450; SMP-30/gluconolaconase/LRE domain-containing protein complement(2811903..2812811) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041931.1 CDS tyrA NC_011080.1 2812869 2813990 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(2812869..2813990) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041932.1 CDS aroF NC_011080.1 2814000 2815070 R 'catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive'; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2814000..2815070) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041933.1 CDS SNSL254_A2884 NC_011080.1 2815245 2815358 R identified by glimmer; hypothetical protein complement(2815245..2815358) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041934.1 CDS SNSL254_A2885 NC_011080.1 2815510 2816028 D hypothetical protein 2815510..2816028 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041935.1 CDS SNSL254_A2886 NC_011080.1 2816021 2817241 D identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; hypothetical protein 2816021..2817241 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041936.1 CDS rplS NC_011080.1 2817398 2817745 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2817398..2817745) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041937.1 CDS trmD NC_011080.1 2817786 2818553 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2817786..2818553) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041938.1 CDS rimM NC_011080.1 2818598 2819149 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(2818598..2819149) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041939.1 CDS rpsP NC_011080.1 2819165 2819413 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2819165..2819413) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041940.1 CDS ffh NC_011080.1 2819666 2821027 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(2819666..2821027) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083641.1 CDS SNSL254_A2892 NC_011080.1 2821193 2821984 D hypothetical protein 2821193..2821984 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041941.1 CDS SNSL254_A2893 NC_011080.1 2822049 2823290 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 2822049..2823290 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041942.1 CDS SNSL254_A2894 NC_011080.1 2823375 2824016 D hypothetical protein 2823375..2824016 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041943.1 CDS grpE NC_011080.1 2824051 2824641 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2824051..2824641) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041944.1 CDS ppnK NC_011080.1 2824764 2825642 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2824764..2825642 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041945.1 CDS recN NC_011080.1 2825728 2827389 D identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; recombination and repair protein 2825728..2827389 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041946.1 CDS SNSL254_A2898 NC_011080.1 2827538 2827876 D identified by match to protein family HMM PF04355; hypothetical protein 2827538..2827876 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041947.1 CDS SNSL254_A2899 NC_011080.1 2828042 2828332 R identified by match to protein family HMM PF03658; hypothetical protein complement(2828042..2828332) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041948.1 CDS SNSL254_A2900 NC_011080.1 2828322 2828798 R identified by match to protein family HMM PF03364; hypothetical protein complement(2828322..2828798) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041949.1 CDS smpB NC_011080.1 2828948 2829430 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; ssrA-binding protein 2828948..2829430 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041950.1 CDS SNSL254_A2902 NC_011080.1 2829576 2829728 R identified by glimmer; hypothetical protein complement(2829576..2829728) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041951.1 CDS SNSL254_A2904 NC_011080.1 2829935 2830087 R identified by glimmer; hypothetical protein complement(2829935..2830087) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041952.1 CDS SNSL254_A2903 NC_011080.1 2830044 2841209 D identified by match to protein family HMM TIGR01965; hypothetical protein 2830044..2841209 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041953.1 CDS SNSL254_A2905 NC_011080.1 2841274 2842683 D identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844; type I secretion outer membrane protein TolC family 2841274..2842683 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041954.1 CDS SNSL254_A2906 NC_011080.1 2842680 2844860 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR03375; protein secretion ABC efflux system permease/ATP-binding protein 2842680..2844860 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041955.1 CDS SNSL254_A2907 NC_011080.1 2844841 2846031 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; type I secretion membrane fusion protein HlyD family 2844841..2846031 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041956.1 CDS SNSL254_A2910 NC_011080.1 2846553 2846795 D identified by glimmer; hypothetical protein 2846553..2846795 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041958.1 CDS SNSL254_A2912 NC_011080.1 2848421 2849539 R hypothetical protein complement(2848421..2849539) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041959.1 CDS SNSL254_A2913 NC_011080.1 2849950 2850090 D identified by glimmer; hypothetical protein 2849950..2850090 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041960.1 CDS SNSL254_A2914 NC_011080.1 2850220 2851923 R phage protein complement(2850220..2851923) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041961.1 CDS SNSL254_A2915 NC_011080.1 2851923 2852468 R phage protein complement(2851923..2852468) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041962.1 CDS SNSL254_A2916 NC_011080.1 2852440 2853165 R hypothetical protein complement(2852440..2853165) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041963.1 CDS SNSL254_A2917 NC_011080.1 2853155 2853709 R identified by match to protein family HMM PF02413; gp20 complement(2853155..2853709) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041964.1 CDS SNSL254_A2918 NC_011080.1 2853722 2855827 R identified by match to protein family HMM PF03406; gp19 complement(2853722..2855827) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041965.1 CDS SNSL254_A2919 NC_011080.1 2855837 2856424 R phage protein complement(2855837..2856424) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041966.1 CDS SNSL254_A2920 NC_011080.1 2856417 2857601 R phage protein complement(2856417..2857601) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041967.1 CDS SNSL254_A2921 NC_011080.1 2857598 2857927 R phage protein complement(2857598..2857927) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041968.1 CDS SNSL254_A2922 NC_011080.1 2857924 2859894 R identified by match to protein family HMM TIGR01760; hypothetical protein complement(2857924..2859894) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041969.1 CDS SNSL254_A2923 NC_011080.1 2860082 2860339 R phage protein complement(2860082..2860339) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041970.1 CDS SNSL254_A2924 NC_011080.1 2860326 2860514 R identified by glimmer; hypothetical protein complement(2860326..2860514) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041971.1 CDS SNSL254_A2925 NC_011080.1 2860486 2860818 R hypothetical protein complement(2860486..2860818) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041972.1 CDS SNSL254_A2926 NC_011080.1 2860818 2861159 R hypothetical protein complement(2860818..2861159) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041973.1 CDS SNSL254_A2927 NC_011080.1 2861156 2861449 R identified by match to protein family HMM PF04550; phage holin family 2 complement(2861156..2861449) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041974.1 CDS SNSL254_A2928 NC_011080.1 2861459 2861914 R phage protein complement(2861459..2861914) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041975.1 CDS SNSL254_A2929 NC_011080.1 2861911 2863038 R tail sheath complement(2861911..2863038) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041976.1 CDS SNSL254_A2930 NC_011080.1 2863035 2863742 R hypothetical protein complement(2863035..2863742) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041977.1 CDS SNSL254_A2931 NC_011080.1 2863739 2864245 R hypothetical protein complement(2863739..2864245) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041978.1 CDS SNSL254_A2932 NC_011080.1 2864242 2864745 R identified by match to protein family HMM PF05926; phage head completion protein complement(2864242..2864745) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041979.1 CDS SNSL254_A2933 NC_011080.1 2864791 2865492 R identified by match to protein family HMM PF05944; phage terminase subunit complement(2864791..2865492) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041980.1 CDS SNSL254_A2934 NC_011080.1 2865496 2866518 R identified by match to protein family HMM PF05125; match to protein family HMM TIGR01551; phage major capsid protein P2 family complement(2865496..2866518) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041981.1 CDS SNSL254_A2935 NC_011080.1 2866580 2867383 R phage capsid scaffolding complement(2866580..2867383) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041983.1 CDS SNSL254_A2937 NC_011080.1 2867544 2869319 D identified by match to protein family HMM PF03237; match to protein family HMM PF06056; hypothetical protein 2867544..2869319 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041984.1 CDS SNSL254_A2938 NC_011080.1 2869316 2870377 D identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540; phage portal protein pbsx family 2869316..2870377 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041985.1 CDS SNSL254_A2939 NC_011080.1 2870428 2870697 D identified by match to protein family HMM PF04606; zinc-finger protein 2870428..2870697 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041986.1 CDS SNSL254_A2940 NC_011080.1 2870671 2870868 R hypothetical protein complement(2870671..2870868) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041987.1 CDS SNSL254_A2941 NC_011080.1 2871002 2873023 R identified by match to protein family HMM PF05840; replication gene A protein complement(2871002..2873023) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041988.1 CDS SNSL254_A2942 NC_011080.1 2873020 2873853 R identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; retron adenine methylase complement(2873020..2873853) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041989.1 CDS SNSL254_A2943 NC_011080.1 2873843 2874172 R gp91 complement(2873843..2874172) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041990.1 CDS SNSL254_A2944 NC_011080.1 2874163 2874393 R hypothetical protein complement(2874163..2874393) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041991.1 CDS SNSL254_A2945 NC_011080.1 2874461 2874862 R identified by glimmer; hypothetical protein complement(2874461..2874862) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041992.1 CDS SNSL254_A2946 NC_011080.1 2874935 2875153 D identified by glimmer; hypothetical protein 2874935..2875153 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041993.1 CDS SNSL254_A2947 NC_011080.1 2875277 2875504 R identified by glimmer; hypothetical protein complement(2875277..2875504) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041994.1 CDS SNSL254_A2948 NC_011080.1 2875514 2876017 R identified by match to protein family HMM PF06892; regulatory protein CII bacteriophage 186 complement(2875514..2876017) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041995.1 CDS SNSL254_A2949 NC_011080.1 2876055 2876258 R identified by glimmer; hypothetical protein complement(2876055..2876258) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041996.1 CDS SNSL254_A2950 NC_011080.1 2876683 2876970 D repressor protein 2876683..2876970 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041997.1 CDS SNSL254_A2951 NC_011080.1 2876970 2877980 D identified by match to protein family HMM PF00589; phage integrase 2876970..2877980 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041998.1 CDS SNSL254_A2952 NC_011080.1 2878326 2879519 D identified by match to protein family HMM PF00589; phage integrase family protein 2878326..2879519 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002041999.1 CDS SNSL254_A2953 NC_011080.1 2879530 2880645 D hypothetical protein 2879530..2880645 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042000.1 CDS SNSL254_A2954 NC_011080.1 2880633 2882402 D identified by match to protein family HMM PF01935; hypothetical protein 2880633..2882402 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042001.1 CDS SNSL254_A2955 NC_011080.1 2882609 2883175 R identified by match to protein family HMM PF07455; phage polarity suppression protein complement(2882609..2883175) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042002.1 CDS SNSL254_A2956 NC_011080.1 2883192 2883437 R identified by match to protein family HMM PF04606; phage transcriptional activator, Ogr/delta complement(2883192..2883437) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042003.1 CDS SNSL254_A2958 NC_011080.1 2883434 2884129 R glycoprotein 3 complement(2883434..2884129) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042004.1 CDS SNSL254_A2957 NC_011080.1 2884097 2884273 D identified by glimmer; hypothetical protein 2884097..2884273 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042005.1 CDS SNSL254_A2959 NC_011080.1 2884243 2884389 D identified by glimmer; hypothetical protein 2884243..2884389 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042006.1 CDS SNSL254_A2960 NC_011080.1 2884712 2884978 D identified by match to protein family HMM PF05930; phage DNA binding protein 2884712..2884978 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042007.1 CDS SNSL254_A2961 NC_011080.1 2885338 2885532 D phage immunity repressor protein 2885338..2885532 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042008.1 CDS SNSL254_A2962 NC_011080.1 2885577 2885756 D hypothetical protein 2885577..2885756 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042009.1 CDS SNSL254_A2963 NC_011080.1 2885753 2886073 D hypothetical protein 2885753..2886073 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042010.1 CDS SNSL254_A2964 NC_011080.1 2886088 2888421 D identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM PF08273; match to protein family HMM PF08706; match to protein family HMM TIGR01613; bacteriophage P4 DNA primase 2886088..2888421 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042011.2 CDS SNSL254_A2965 NC_011080.1 2889262 2889801 R identified by match to protein family HMM PF03614; phase 1 flagellin gene repressor complement(2889262..2889801) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042012.1 CDS SNSL254_A2966 NC_011080.1 2889869 2891389 R 'structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes'; flagellin complement(2889869..2891389) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042013.1 CDS SNSL254_A2967 NC_011080.1 2891481 2892047 D identified by match to protein family HMM PF00239; match to protein family HMM PF02796; DNA-invertase hin 2891481..2892047 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042014.1 CDS SNSL254_A2968 NC_011080.1 2893015 2894130 D identified by match to protein family HMM PF06722; hypothetical protein 2893015..2894130 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042015.1 CDS SNSL254_A2969 NC_011080.1 2894211 2897867 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ATP binding cassette 2894211..2897867 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042016.1 CDS SNSL254_A2970 NC_011080.1 2897977 2899221 D identified by match to protein family HMM PF00756; enterochelin esterase 2897977..2899221 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042017.1 CDS SNSL254_A2971 NC_011080.1 2899253 2900188 D hypothetical protein 2899253..2900188 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042018.1 CDS SNSL254_A2972 NC_011080.1 2900230 2902404 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(2900230..2902404) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042019.1 CDS SNSL254_A2974 NC_011080.1 2903442 2904542 R identified by match to protein family HMM PF00805; effector protein pipB2 complement(2903442..2904542) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042020.1 CDS SNSL254_A2975 NC_011080.1 2905012 2905941 D homologous sequence to VirK in Shigella; identified by match to protein family HMM PF04393; virulence protein 2905012..2905941 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042021.1 CDS SNSL254_A2976 NC_011080.1 2906041 2906238 D identified by glimmer; hypothetical protein 2906041..2906238 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042022.1 CDS SNSL254_A2977 NC_011080.1 2906235 2907131 D identified by match to protein family HMM PF07395; hypothetical protein 2906235..2907131 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042023.1 CDS SNSL254_A2978 NC_011080.1 2907647 2907760 D hypothetical protein 2907647..2907760 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042024.1 CDS hoxN NC_011080.1 2907853 2908866 R identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802; high-affinity nickel transport protein complement(2907853..2908866) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042025.1 CDS SNSL254_A2980 NC_011080.1 2908999 2910414 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521; tricarboxylic transport regulatory protein complement(2908999..2910414) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042026.1 CDS SNSL254_A2981 NC_011080.1 2910401 2911075 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator TctD complement(2910401..2911075) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042027.1 CDS SNSL254_A2982 NC_011080.1 2911230 2912207 D identified by match to protein family HMM PF03401; tricarboxylic transport 2911230..2912207 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042028.1 CDS SNSL254_A2983 NC_011080.1 2912222 2912653 D tricarboxylic transport 2912222..2912653 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042029.1 CDS SNSL254_A2984 NC_011080.1 2912664 2914178 D identified by match to protein family HMM PF01970; hypothetical protein 2912664..2914178 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042030.1 CDS SNSL254_A2985 NC_011080.1 2914342 2914455 D identified by glimmer; hypothetical protein 2914342..2914455 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042031.1 CDS SNSL254_A2986 NC_011080.1 2914482 2915459 D in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 2914482..2915459 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042032.1 CDS SNSL254_A2987 NC_011080.1 2915485 2916753 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2915485..2916753 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042033.1 CDS gabD NC_011080.1 2916775 2918223 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2916775..2918223 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042034.1 CDS gabT NC_011080.1 2918238 2919521 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2918238..2919521 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042035.1 CDS gabP NC_011080.1 2919651 2921051 D identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773; gamma-aminobutyrate transporter 2919651..2921051 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042036.1 CDS SNSL254_A2991 NC_011080.1 2921093 2921770 D regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2921093..2921770 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042037.1 CDS SNSL254_A2992 NC_011080.1 2921792 2922241 R identified by match to protein family HMM PF01476; match to protein family HMM PF04972; LysM domain/BON superfamily protein complement(2921792..2922241) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042038.1 CDS SNSL254_A2993 NC_011080.1 2922341 2922499 R identified by match to protein family HMM PF01679; hypothetical protein complement(2922341..2922499) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042039.1 CDS SNSL254_A2994 NC_011080.1 2922682 2922981 D identified by match to protein family HMM PF01022; regulatory protein ArsR 2922682..2922981 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042040.1 CDS SNSL254_A2995 NC_011080.1 2922991 2923518 D identified by match to protein family HMM PF00581; hypothetical protein 2922991..2923518 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042041.1 CDS SNSL254_A2996 NC_011080.1 2923597 2923776 D hypothetical protein 2923597..2923776 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042042.1 CDS SNSL254_A2997 NC_011080.1 2923866 2924267 R identified by match to protein family HMM PF00816; DNA binding protein complement(2923866..2924267) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042044.1 CDS SNSL254_A2999 NC_011080.1 2924966 2925415 D identified by match to protein family HMM PF06610; hypothetical protein 2924966..2925415 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042045.1 CDS SNSL254_A3000 NC_011080.1 2925450 2925800 R identified by match to protein family HMM PF09400; hypothetical protein complement(2925450..2925800) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042046.1 CDS SNSL254_A3001 NC_011080.1 2925962 2926288 D identified by match to protein family HMM PF05957; hypothetical protein 2925962..2926288 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042047.1 CDS SNSL254_A3002 NC_011080.1 2926372 2927706 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator complement(2926372..2927706) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042048.1 CDS SNSL254_A3003 NC_011080.1 2927792 2928226 D identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase 2927792..2928226 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042049.1 CDS SNSL254_A3004 NC_011080.1 2928250 2928399 D hypothetical protein 2928250..2928399 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042050.1 CDS SNSL254_A3005 NC_011080.1 2928498 2928743 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; glutaredoxin-like protein 2928498..2928743 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042051.1 CDS nrdI NC_011080.1 2928740 2929150 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2928740..2929150 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042052.1 CDS SNSL254_A3007 NC_011080.1 2929123 2931267 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2929123..2931267 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042053.1 CDS nrdF NC_011080.1 2931278 2932237 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2931278..2932237 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042054.1 CDS proV NC_011080.1 2932592 2933794 D with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2932592..2933794 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042055.1 CDS SNSL254_A3010 NC_011080.1 2933787 2934851 D with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2933787..2934851 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042056.1 CDS proX NC_011080.1 2934921 2935916 D 'with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine'; glycine betaine transporter periplasmic subunit 2934921..2935916 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042057.1 CDS SNSL254_A3012 NC_011080.1 2936081 2937265 D identified by match to protein family HMM PF07690; major facilitator family transporter protein 2936081..2937265 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042058.1 CDS mprA NC_011080.1 2937762 2938292 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2937762..2938292 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042059.1 CDS emrA NC_011080.1 2938419 2939591 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR00998; multidrug resistance protein A 2938419..2939591 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042060.1 CDS emrB NC_011080.1 2939608 2941146 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein B 2939608..2941146 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042061.1 CDS SNSL254_A3016 NC_011080.1 2941195 2942565 R glycoporin complement(2941195..2942565) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042062.1 CDS SNSL254_A3017 NC_011080.1 2942710 2942853 D hypothetical protein 2942710..2942853 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042063.1 CDS luxS NC_011080.1 2942911 2943426 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(2942911..2943426) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042064.1 CDS gshA NC_011080.1 2943576 2945132 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(2943576..2945132) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042065.1 CDS SNSL254_A3021 NC_011080.1 2945209 2945634 R hypothetical protein complement(2945209..2945634) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042066.1 CDS SNSL254_A3022 NC_011080.1 2945631 2946197 R 'YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent'; fructose-1-phosphatase complement(2945631..2946197) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042067.1 CDS csrA NC_011080.1 2947450 2947635 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(2947450..2947635) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042068.1 CDS alaS NC_011080.1 2947870 2950500 R 'Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; alanyl-tRNA synthetase complement(2947870..2950500) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042069.1 CDS recX NC_011080.1 2950736 2951236 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2950736..2951236) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042070.1 CDS recA NC_011080.1 2951353 2952414 R 'catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs'; recombinase A complement(2951353..2952414) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042071.1 CDS SNSL254_A3032 NC_011080.1 2952499 2952996 R identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A complement(2952499..2952996) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042072.1 CDS mltB NC_011080.1 2953475 2954554 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B complement(2953475..2954554) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042073.1 CDS SNSL254_A3034 NC_011080.1 2954808 2955371 D identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821; glucitol/sorbitol permease iic component 2954808..2955371 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042074.1 CDS SNSL254_A3035 NC_011080.1 2955368 2956339 D identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825; glucitol/sorbitol-specific phosphotransferase enzyme iib component 2955368..2956339 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042075.1 CDS SNSL254_A3036 NC_011080.1 2956351 2956713 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 2956351..2956713 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042076.1 CDS srlD NC_011080.1 2956725 2957504 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 2956725..2957504 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042077.1 CDS SNSL254_A3038 NC_011080.1 2957581 2957940 D regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2957581..2957940 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042078.1 CDS srlR NC_011080.1 2958138 2958911 D regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2958138..2958911 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042079.1 CDS gutQ NC_011080.1 2958904 2959869 D catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 2958904..2959869 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042080.1 CDS SNSL254_A3041 NC_011080.1 2959866 2961386 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(2959866..2961386) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042081.1 CDS norV NC_011080.1 2961572 2963011 D detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2961572..2963011 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042082.1 CDS SNSL254_A3043 NC_011080.1 2963008 2964141 D catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2963008..2964141 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042083.1 CDS hypF NC_011080.1 2964238 2966478 R identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF complement(2964238..2966478) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042084.1 CDS SNSL254_A3045 NC_011080.1 2966624 2967169 R involved in electron transport from formate to hydrogen; electron transport protein HydN complement(2966624..2967169) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042085.1 CDS SNSL254_A3046 NC_011080.1 2967138 2967272 R hypothetical protein complement(2967138..2967272) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042086.1 CDS SNSL254_A3047 NC_011080.1 2967370 2968179 R periplasmic or exported protein complement(2967370..2968179) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042087.1 CDS hycI NC_011080.1 2968206 2968676 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease complement(2968206..2968676) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042088.1 CDS SNSL254_A3049 NC_011080.1 2968669 2969079 R identified by match to protein family HMM PF07450; formate hydrogenlyase maturation protein complement(2968669..2969079) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042089.1 CDS hycG NC_011080.1 2969076 2969843 R identified by match to protein family HMM PF01058; formate hydrogenlyase subunit G complement(2969076..2969843) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042090.1 CDS hycF NC_011080.1 2969843 2970385 R 'electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate'; formate hydrogenlyase complex iron-sulfur subunit complement(2969843..2970385) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042091.1 CDS hycE NC_011080.1 2970395 2972104 R identified by match to protein family HMM PF00329; match to protein family HMM PF00346; formate hydrogenlyase subunit E complement(2970395..2972104) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042092.1 CDS hycD NC_011080.1 2972122 2973045 R identified by match to protein family HMM PF00146; formate hydrogenlyase subunit D complement(2972122..2973045) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042093.1 CDS hycC NC_011080.1 2973048 2974874 R 'catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3)'; formate hydrogenlyase subunit 3 complement(2973048..2974874) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042094.1 CDS hycB NC_011080.1 2974874 2975482 R identified by match to protein family HMM PF00037; formate hydrogenlyase subunit B complement(2974874..2975482) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042096.1 CDS SNSL254_A3057 NC_011080.1 2975628 2976089 R regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA complement(2975628..2976089) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042097.1 CDS SNSL254_A3058 NC_011080.1 2976135 2976338 D identified by glimmer; hypothetical protein 2976135..2976338 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042098.1 CDS hypA NC_011080.1 2976299 2976655 D plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 2976299..2976655 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042099.1 CDS hypB NC_011080.1 2976724 2977596 D GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 2976724..2977596 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042100.1 CDS hypC2 NC_011080.1 2977587 2977859 D 'HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase'; hydrogenase assembly chaperone 2977587..2977859 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042101.1 CDS hypD NC_011080.1 2977859 2978980 D identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 2977859..2978980 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042102.1 CDS hypE NC_011080.1 2978977 2979987 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 2978977..2979987 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042103.1 CDS SNSL254_A3064 NC_011080.1 2980206 2982284 D identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; formate hydrogenlyase transcriptional activator 2980206..2982284 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042104.1 CDS SNSL254_A3065 NC_011080.1 2982346 2982690 R hypothetical protein complement(2982346..2982690) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042105.1 CDS SNSL254_A3066 NC_011080.1 2982872 2983789 D identified by match to protein family HMM PF01297; periplasmic chelated iron-binding protein YfeA 2982872..2983789 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042106.1 CDS SNSL254_A3067 NC_011080.1 2983786 2984607 D identified by match to protein family HMM PF00005; chelated iron transport system membrane protein YfeB 2983786..2984607 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042107.1 CDS SNSL254_A3068 NC_011080.1 2984604 2985464 D identified by match to protein family HMM PF00950; match to protein family HMM PF01032; chelated iron transport system membrane protein YfeC 2984604..2985464 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042108.1 CDS SNSL254_A3069 NC_011080.1 2985455 2986303 D identified by match to protein family HMM PF00950; chelated iron transport system membrane protein YfeD 2985455..2986303 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042109.1 CDS SNSL254_A3071 NC_011080.1 2987472 2988227 R transcriptional regulator complement(2987472..2988227) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042110.1 CDS SNSL254_A3072 NC_011080.1 2988611 2989498 R identified by match to protein family HMM PF00165; araC family transcriptional regulator complement(2988611..2989498) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042111.2 CDS SNSL254_A3073 NC_011080.1 2989843 2990295 R hypothetical protein complement(2989843..2990295) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042112.1 CDS SNSL254_A3074 NC_011080.1 2990292 2990972 R oxygen-regulated invasion protein OrgB complement(2990292..2990972) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042113.1 CDS SNSL254_A3075 NC_011080.1 2990929 2991507 R identified by match to protein family HMM PF09482; match to protein family HMM TIGR02555; type III secretion apparatus protein OrgA/MxiK complement(2990929..2991507) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042114.1 CDS SNSL254_A3076 NC_011080.1 2991500 2992258 R identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein YscJ/HrcJ family complement(2991500..2992258) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042115.2 CDS SNSL254_A3077 NC_011080.1 2992255 2992560 R hypothetical protein complement(2992255..2992560) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042116.1 CDS eprI NC_011080.1 2992579 2992821 R identified by match to protein family HMM PF09392; match to protein family HMM TIGR02105; type III secretion apparatus needle protein complement(2992579..2992821) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042117.2 CDS eprH NC_011080.1 2992846 2994024 R identified by match to protein family HMM PF09480; match to protein family HMM TIGR02554; type III secretion apparatus protein PrgH/EprH complement(2992846..2994024) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042118.1 CDS SNSL254_A3080 NC_011080.1 2994340 2995269 D identified by match to protein family HMM PF00165; transcriptional regulator HilD 2994340..2995269 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042119.1 CDS SNSL254_A3081 NC_011080.1 2996360 2998021 D Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 2996360..2998021 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042120.1 CDS SNSL254_A3082 NC_011080.1 2998039 2998521 D identified by match to protein family HMM PF01464; cell invasion protein 2998039..2998521 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042121.1 CDS SNSL254_A3083 NC_011080.1 2998575 3000182 R identified by match to protein family HMM PF00102; match to protein family HMM PF03545; match to protein family HMM PF09119; effector protein SptP complement(2998575..3000182) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042122.1 CDS SNSL254_A3084 NC_011080.1 3000193 3000585 R identified by match to protein family HMM PF05932; secretion chaperone complement(3000193..3000585) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042123.1 CDS SNSL254_A3085 NC_011080.1 3000612 3000836 R hypothetical protein complement(3000612..3000836) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042124.1 CDS SNSL254_A3086 NC_011080.1 3000916 3001164 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3000916..3001164) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042125.1 CDS SNSL254_A3087 NC_011080.1 3001183 3003195 R identified by match to protein family HMM PF09052; cell invasion protein SipA complement(3001183..3003195) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083642.1 CDS SNSL254_A3088 NC_011080.1 3003259 3004290 R type III effector protein; cell invasion protein SipD complement(3003259..3004290) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083643.1 CDS SNSL254_A3089 NC_011080.1 3004361 3005590 R pathogenicity island 1 effector protein SipC; invasin protein SipC complement(3004361..3005590) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042126.1 CDS SNSL254_A3090 NC_011080.1 3005618 3007399 R identified by match to protein family HMM PF03518; cell invasion protein SipB complement(3005618..3007399) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042127.1 CDS SNSL254_A3091 NC_011080.1 3007402 3007899 R identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD complement(3007402..3007899) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042128.1 CDS SNSL254_A3092 NC_011080.1 3008037 3009107 R Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS complement(3008037..3009107) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042129.1 CDS epaR NC_011080.1 3009094 3009885 R identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT complement(3009094..3009885) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042130.1 CDS SNSL254_A3094 NC_011080.1 3009889 3010149 R identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403; hypothetical protein complement(3009889..3010149) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042131.1 CDS spaP NC_011080.1 3010175 3010849 R part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP complement(3010175..3010849) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042132.1 CDS epaO NC_011080.1 3010839 3011750 R involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO complement(3010839..3011750) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042133.1 CDS SNSL254_A3097 NC_011080.1 3011750 3012760 R identified by match to protein family HMM PF02510; antigen presentation protein SpaN complement(3011750..3012760) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042134.1 CDS SNSL254_A3098 NC_011080.1 3012760 3013203 R identified by match to protein family HMM PF02090; surface presentation of antigens protein SpaM complement(3012760..3013203) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042135.1 CDS SNSL254_A3099 NC_011080.1 3013181 3014476 R Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL complement(3013181..3014476) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042136.1 CDS SNSL254_A3100 NC_011080.1 3014473 3014880 R identified by match to protein family HMM PF03519; surface presentation of antigens protein SpaK complement(3014473..3014880) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042137.1 CDS SNSL254_A3101 NC_011080.1 3014904 3016961 R identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399; invasion protein InvA complement(3014904..3016961) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042138.1 CDS SNSL254_A3102 NC_011080.1 3016986 3018104 R identified by match to protein family HMM PF02523; match to protein family HMM TIGR02568; invasion protein InvE complement(3016986..3018104) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042139.2 CDS SNSL254_A3103 NC_011080.1 3018101 3019789 R identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; YscC/HrcC family type III secretion outer membrane protein complement(3018101..3019789) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042140.1 CDS SNSL254_A3104 NC_011080.1 3019786 3020535 R identified by match to protein family HMM PF00165; invasion protein complement(3019786..3020535) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042141.1 CDS SNSL254_A3105 NC_011080.1 3020892 3021335 D identified by match to protein family HMM PF04741; cell adherance/invasion protein 3020892..3021335 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042142.2 CDS SNSL254_A3106 NC_011080.1 3022821 3023147 R hypothetical protein complement(3022821..3023147) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042143.1 CDS SNSL254_A3107 NC_011080.1 3023845 3024126 D identified by match to protein family HMM PF08681; ABC transporter 3023845..3024126 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042144.1 CDS SNSL254_A3108 NC_011080.1 3024123 3024650 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 3024123..3024650 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042145.1 CDS SNSL254_A3109 NC_011080.1 3024723 3025160 R transposase complement(3024723..3025160) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042146.1 CDS SNSL254_A3110 NC_011080.1 3025366 3026022 D identified by match to protein family HMM PF00149; serine/threonine-specific protein phosphatase 2 3025366..3026022 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042147.1 CDS SNSL254_A3111 NC_011080.1 3026194 3026688 R hypothetical protein complement(3026194..3026688) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042148.1 CDS SNSL254_A3112 NC_011080.1 3026715 3027383 R hypothetical protein complement(3026715..3027383) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042149.1 CDS SNSL254_A3113 NC_011080.1 3028206 3028319 R identified by glimmer; hypothetical protein complement(3028206..3028319) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042150.1 CDS mutS NC_011080.1 3028527 3031094 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3028527..3031094 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042151.1 CDS SNSL254_A3115 NC_011080.1 3031150 3031530 R hypothetical protein complement(3031150..3031530) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042152.1 CDS SNSL254_A3116 NC_011080.1 3031527 3032735 R identified by match to protein family HMM PF07690; major facilitator family transporter protein complement(3031527..3032735) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042153.1 CDS SNSL254_A3117 NC_011080.1 3032844 3033755 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3032844..3033755 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042154.1 CDS SNSL254_A3118 NC_011080.1 3033797 3035293 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; hypothetical protein complement(3033797..3035293) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042155.1 CDS SNSL254_A3119 NC_011080.1 3035290 3036240 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase complement(3035290..3036240) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042156.1 CDS SNSL254_A3120 NC_011080.1 3036280 3037056 R identified by match to protein family HMM PF01261; hypothetical protein complement(3036280..3037056) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042157.1 CDS SNSL254_A3121 NC_011080.1 3037061 3037699 R identified by match to protein family HMM PF00596; aldolase complement(3037061..3037699) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042158.1 CDS SNSL254_A3122 NC_011080.1 3037696 3038958 R identified by match to protein family HMM PF07005; hypothetical protein complement(3037696..3038958) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042159.1 CDS SNSL254_A3123 NC_011080.1 3038952 3039875 R identified by match to protein family HMM PF03446; D-beta-hydroxybutyrate dehydrogenase complement(3038952..3039875) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042160.1 CDS SNSL254_A3124 NC_011080.1 3040072 3040836 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 3040072..3040836 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042161.1 CDS SNSL254_A3125 NC_011080.1 3040855 3041259 R identified by match to protein family HMM PF01047; transcriptional regulator HosA complement(3040855..3041259) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042162.1 CDS kpdB NC_011080.1 3041430 3042023 D identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; 4-hydroxybenzoate decarboxylase subunit B 3041430..3042023 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042163.1 CDS kpdC NC_011080.1 3042023 3043450 D identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 4-hydroxybenzoate decarboxylase subunit C 3042023..3043450 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042164.1 CDS kpdD NC_011080.1 3043461 3043697 D 4-hydroxybenzoate decarboxylase subunit D 3043461..3043697 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042165.1 CDS rpoS NC_011080.1 3043742 3044734 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(3043742..3044734) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042166.1 CDS nlpD NC_011080.1 3044797 3045930 R outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD complement(3044797..3045930) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042167.1 CDS pcm NC_011080.1 3046106 3046732 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(3046106..3046732) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042168.1 CDS surE NC_011080.1 3046726 3047487 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3046726..3047487) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042169.1 CDS truD NC_011080.1 3047468 3048517 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(3047468..3048517) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042170.1 CDS ispF NC_011080.1 3048514 3048993 R 'catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate'; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3048514..3048993) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042171.1 CDS ispD NC_011080.1 3048993 3049703 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3048993..3049703) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042172.1 CDS ftsB NC_011080.1 3049722 3050033 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(3049722..3050033) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042173.2 CDS SNSL254_A3138 NC_011080.1 3050224 3050580 R hypothetical protein complement(3050224..3050580) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042174.1 CDS cysC NC_011080.1 3050598 3051203 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(3050598..3051203) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042175.1 CDS cysN NC_011080.1 3051190 3052629 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(3051190..3052629) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042176.1 CDS cysD NC_011080.1 3052639 3053547 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3052639..3053547) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042177.1 CDS SNSL254_A3142 NC_011080.1 3053798 3054844 D catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase 3053798..3054844 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042179.1 CDS cas2 NC_011080.1 3056558 3056851 R identified by match to protein family HMM PF09707; match to protein family HMM TIGR01873; hypothetical protein complement(3056558..3056851) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042180.1 CDS cas1 NC_011080.1 3056854 3057771 R identified by match to protein family HMM TIGR00287; CRISPR-associated protein Cas1 complement(3056854..3057771) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042181.1 CDS cse NC_011080.1 3057771 3058475 R identified by match to protein family HMM PF08798; match to protein family HMM TIGR01907; crispr-associated protein Cse3 family complement(3057771..3058475) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042182.1 CDS cas5e NC_011080.1 3058475 3059200 R identified by match to protein family HMM PF09708; match to protein family HMM TIGR01868; match to protein family HMM TIGR02593; CRISPR-associated Cas5 family protein complement(3058475..3059200) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042183.1 CDS cse4 NC_011080.1 3059210 3060268 R identified by match to protein family HMM PF09344; match to protein family HMM TIGR01869; CRISPR-associated protein Cse4 family complement(3059210..3060268) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042184.1 CDS cse2 NC_011080.1 3060291 3060893 R identified by match to protein family HMM PF09485; match to protein family HMM TIGR02548; CRISPR-associated protein Cse2 family complement(3060291..3060893) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042185.1 CDS cse1 NC_011080.1 3060910 3062445 R identified by match to protein family HMM PF09481; match to protein family HMM TIGR02547; CRISPR-associated protein Cse1 family complement(3060910..3062445) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042186.1 CDS SNSL254_A3156 NC_011080.1 3065757 3066839 D Sop effector protein SopD 3065757..3066839 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042187.1 CDS cysH NC_011080.1 3067052 3067786 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3067052..3067786) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042188.1 CDS cysI NC_011080.1 3067862 3069574 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3067862..3069574) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042189.1 CDS cysJ NC_011080.1 3069574 3071373 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha complement(3069574..3071373) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042191.1 CDS SNSL254_A3160 NC_011080.1 3071797 3072159 D identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 3071797..3072159 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042192.1 CDS SNSL254_A3162 NC_011080.1 3072247 3073044 R identified by match to protein family HMM PF00753; beta-lactamase complement(3072247..3073044) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042193.1 CDS SNSL254_A3164 NC_011080.1 3073982 3074098 D identified by glimmer; hypothetical protein 3073982..3074098 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042194.1 CDS SNSL254_A3165 NC_011080.1 3074159 3074278 D hypothetical protein 3074159..3074278 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042195.1 CDS SNSL254_A3166 NC_011080.1 3074448 3074594 R identified by glimmer; hypothetical protein complement(3074448..3074594) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042196.1 CDS SNSL254_A3167 NC_011080.1 3074625 3075296 R identified by match to protein family HMM PF04055; hypothetical protein complement(3074625..3075296) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042197.1 CDS eno NC_011080.1 3075432 3076730 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3075432..3076730) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042198.1 CDS pyrG NC_011080.1 3076813 3078450 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3076813..3078450) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042199.1 CDS mazG NC_011080.1 3078678 3079478 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(3078678..3079478) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042200.1 CDS SNSL254_A3171 NC_011080.1 3080087 3080674 D identified by match to protein family HMM PF00419; fimbrial subunit 3080087..3080674 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042201.1 CDS SNSL254_A3172 NC_011080.1 3080808 3083453 D identified by match to protein family HMM PF00577; fimbrial usher protein 3080808..3083453 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042202.1 CDS SNSL254_A3173 NC_011080.1 3083466 3084239 D identified by match to protein family HMM PF00345; chaperone protein PapD 3083466..3084239 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042203.1 CDS SNSL254_A3174 NC_011080.1 3084259 3084765 D identified by match to protein family HMM PF00419; fimbrial subunit 3084259..3084765 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042204.1 CDS SNSL254_A3175 NC_011080.1 3084780 3085250 D identified by match to protein family HMM PF00419; fimbrial subunit 3084780..3085250 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042205.1 CDS SNSL254_A3176 NC_011080.1 3085247 3085783 D identified by match to protein family HMM PF00419; fimbrial subunit 3085247..3085783 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042206.1 CDS SNSL254_A3177 NC_011080.1 3085838 3086869 D hypothetical protein 3085838..3086869 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042207.1 CDS relA NC_011080.1 3087219 3089453 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase complement(3087219..3089453) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042208.1 CDS rumA NC_011080.1 3089505 3090800 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3089505..3090800) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042209.1 CDS SNSL254_A3180 NC_011080.1 3090858 3093614 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3090858..3093614 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042210.1 CDS SNSL254_A3181 NC_011080.1 3093658 3094800 R identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase complement(3093658..3094800) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042211.1 CDS SNSL254_A3182 NC_011080.1 3094878 3096218 R identified by match to protein family HMM PF01188; match to protein family HMM TIGR03247; glucarate dehydratase complement(3094878..3096218) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042212.1 CDS SNSL254_A3183 NC_011080.1 3096239 3097579 R identified by match to protein family HMM PF01188; glucarate dehydratase complement(3096239..3097579) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042213.1 CDS gudP NC_011080.1 3097576 3098934 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00893; glucarate permease complement(3097576..3098934) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042214.1 CDS SNSL254_A3186 NC_011080.1 3099416 3099865 R 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin complement(3099416..3099865) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042215.1 CDS SNSL254_A3187 NC_011080.1 3099884 3100666 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(3099884..3100666) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042216.1 CDS SNSL254_A3188 NC_011080.1 3100666 3100995 R identified by match to protein family HMM PF04287; hypothetical protein complement(3100666..3100995) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042217.1 CDS SNSL254_A3190 NC_011080.1 3101606 3102151 R SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3101606..3102151) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042218.1 CDS queF NC_011080.1 3102220 3103068 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3102220..3103068 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042219.1 CDS SNSL254_A3192 NC_011080.1 3103181 3104545 D identified by match to protein family HMM PF03641; lysine decarboxylase family protein 3103181..3104545 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042220.1 CDS SNSL254_A3193 NC_011080.1 3105110 3106399 D identified by match to protein family HMM TIGR00814; serine transporter family protein 3105110..3106399 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042221.1 CDS SNSL254_A3194 NC_011080.1 3106458 3107825 D identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 3106458..3107825 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042222.2 CDS xni NC_011080.1 3107935 3108750 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3107935..3108750 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042223.1 CDS fucO NC_011080.1 3108842 3109990 R identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; L-1,2-propanediol oxidoreductase complement(3108842..3109990) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042224.1 CDS fucA NC_011080.1 3110007 3110654 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase complement(3110007..3110654) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042225.1 CDS SNSL254_A3198 NC_011080.1 3110808 3110975 R hypothetical protein complement(3110808..3110975) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042226.1 CDS SNSL254_A3199 NC_011080.1 3111062 3111184 R identified by glimmer; hypothetical protein complement(3111062..3111184) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042227.1 CDS fucP NC_011080.1 3111210 3112526 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose transporter 3111210..3112526 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042228.1 CDS fucI NC_011080.1 3112558 3114333 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3112558..3114333 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042229.1 CDS fucK NC_011080.1 3114434 3115852 D identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR02628; L-fuculokinase 3114434..3115852 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042230.1 CDS SNSL254_A3203 NC_011080.1 3115854 3116276 D identified by match to protein family HMM PF05025; fuscose operon FucU protein 3115854..3116276 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042231.1 CDS SNSL254_A3204 NC_011080.1 3116325 3117044 D regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3116325..3117044 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042232.1 CDS SNSL254_A3205 NC_011080.1 3117103 3118203 R RNA 2'-O-ribose methyltransferase complement(3117103..3118203) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042233.1 CDS SNSL254_A3206 NC_011080.1 3118196 3118591 R identified by match to protein family HMM PF04241; hypothetical protein complement(3118196..3118591) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042234.1 CDS gcvA NC_011080.1 3118610 3119527 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3118610..3119527) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042235.1 CDS SNSL254_A3209 NC_011080.1 3119874 3120101 R identified by match to protein family HMM PF06004; lipoprotein complement(3119874..3120101) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042236.1 CDS csdA NC_011080.1 3120294 3121499 D identified by match to protein family HMM PF00266; match to protein family HMM TIGR03392; cysteine sulfinate desulfinase 3120294..3121499 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042237.1 CDS csdE NC_011080.1 3121499 3121942 D identified by match to protein family HMM PF02657; match to protein family HMM TIGR03391; cysteine desulfurase, sulfur acceptor subunit CsdE 3121499..3121942 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042238.1 CDS rarD NC_011080.1 3122215 3123129 D identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 3122215..3123129 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042239.1 CDS SNSL254_A3213 NC_011080.1 3123181 3123987 R identified by match to protein family HMM PF00899; ThiF family protein complement(3123181..3123987) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083644.1 CDS SNSL254_A3214 NC_011080.1 3124097 3125194 R murein transglycosylase A complement(3124097..3125194) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083645.1 CDS SNSL254_A3217 NC_011080.1 3125694 3126947 R N-acetylmuramoyl-L-alanine amidase complement(3125694..3126947) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042240.1 CDS argA NC_011080.1 3127180 3128511 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3127180..3128511 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042241.1 CDS recD NC_011080.1 3128614 3130449 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha complement(3128614..3130449) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042242.1 CDS recB NC_011080.1 3130446 3133991 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta complement(3130446..3133991) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042243.1 CDS SNSL254_A3221 NC_011080.1 3133984 3136872 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; protease 3 complement(3133984..3136872) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042244.1 CDS recC NC_011080.1 3137050 3140421 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma complement(3137050..3140421) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042245.1 CDS ppdC NC_011080.1 3140437 3140757 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein complement(3140437..3140757) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042246.1 CDS SNSL254_A3224 NC_011080.1 3140742 3141149 R 'alternate name YgdB, URF2; orf of X03966; 2nd start; ORF_f121'; hypothetical protein complement(3140742..3141149) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042247.1 CDS SNSL254_A3225 NC_011080.1 3141146 3141670 R hypothetical protein complement(3141146..3141670) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042248.1 CDS SNSL254_A3226 NC_011080.1 3141700 3142170 R identified by match to protein family HMM TIGR02532; hypothetical protein complement(3141700..3142170) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042249.1 CDS SNSL254_A3227 NC_011080.1 3142180 3142362 D hypothetical protein 3142180..3142362 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042250.1 CDS thyA NC_011080.1 3142355 3143149 R 'ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived'; thymidylate synthase complement(3142355..3143149) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042251.1 CDS lgt NC_011080.1 3143156 3144031 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3143156..3144031) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042252.1 CDS SNSL254_A3230 NC_011080.1 3144028 3144186 R identified by glimmer; hypothetical protein complement(3144028..3144186) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042253.1 CDS ptsP NC_011080.1 3144247 3146493 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein complement(3144247..3146493) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042254.1 CDS nudH NC_011080.1 3146506 3147036 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3146506..3147036) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042255.1 CDS mutH NC_011080.1 3147719 3148414 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3147719..3148414 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042256.1 CDS SNSL254_A3234 NC_011080.1 3148596 3149309 D identified by match to protein family HMM PF03741; hypothetical protein 3148596..3149309 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042257.1 CDS SNSL254_A3235 NC_011080.1 3149479 3149697 D identified by match to protein family HMM PF06004; hypothetical protein 3149479..3149697 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042258.1 CDS tas NC_011080.1 3149888 3150928 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 3149888..3150928 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042259.1 CDS SNSL254_A3237 NC_011080.1 3151015 3152217 R identified by match to protein family HMM PF07690; lysophospholipid transporter LplT complement(3151015..3152217) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042260.1 CDS SNSL254_A3238 NC_011080.1 3152210 3154369 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(3152210..3154369) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042261.1 CDS SNSL254_A3242 NC_011080.1 3154838 3154963 R hypothetical protein complement(3154838..3154963) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042262.1 CDS SNSL254_A3241 NC_011080.1 3154962 3155990 D controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3154962..3155990 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042263.1 CDS SNSL254_A3243 NC_011080.1 3156001 3157023 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator AscG 3156001..3157023 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042264.1 CDS lysA NC_011080.1 3157033 3158295 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(3157033..3158295) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042265.1 CDS SNSL254_A3245 NC_011080.1 3158413 3159348 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3158413..3159348 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042266.1 CDS SNSL254_A3246 NC_011080.1 3159320 3160027 R identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; racemase complement(3159320..3160027) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042267.1 CDS SNSL254_A3247 NC_011080.1 3160140 3161558 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; L-arabinose/proton symport protein complement(3160140..3161558) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042268.1 CDS kduD NC_011080.1 3161912 3162673 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase complement(3161912..3162673) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042269.1 CDS kduI NC_011080.1 3162730 3163566 R '4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate'; 5-keto-4-deoxyuronate isomerase complement(3162730..3163566) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042270.1 CDS SNSL254_A3250 NC_011080.1 3163557 3163727 R identified by glimmer; hypothetical protein complement(3163557..3163727) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042271.1 CDS SNSL254_A3251 NC_011080.1 3163996 3165174 R 'Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis'; acetyl-CoA acetyltransferase complement(3163996..3165174) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042272.1 CDS SNSL254_A3252 NC_011080.1 3165297 3166160 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(3165297..3166160) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042273.1 CDS SNSL254_A3253 NC_011080.1 3166264 3166719 D identified by match to protein family HMM PF05232; transmembrane pair domain-containing protein 3166264..3166719 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042274.1 CDS SNSL254_A3254 NC_011080.1 3166861 3168090 D inner membrane transport protein YqeG 3166861..3168090 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042275.1 CDS SNSL254_A3255 NC_011080.1 3168121 3168393 R identified by match to protein family HMM PF02583; hypothetical protein complement(3168121..3168393) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042276.1 CDS SNSL254_A3256 NC_011080.1 3168515 3169339 D membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3168515..3169339 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042277.1 CDS SNSL254_A3257 NC_011080.1 3169549 3170307 R hypothetical protein complement(3169549..3170307) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042278.1 CDS SNSL254_A3258 NC_011080.1 3170294 3170800 R identified by match to protein family HMM PF07180; hypothetical protein complement(3170294..3170800) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_003495231.1 CDS SNSL254_A3259 NC_011080.1 3170907 3171956 R hypothetical protein complement(3170907..3171956) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042279.1 CDS SNSL254_A3260 NC_011080.1 3171974 3172717 R identified by match to protein family HMM PF00345; pili assembly chaperone protein complement(3171974..3172717) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042280.1 CDS SNSL254_A3261 NC_011080.1 3172758 3175247 R identified by match to protein family HMM PF00577; fimbrial usher protein complement(3172758..3175247) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042281.1 CDS SNSL254_A3262 NC_011080.1 3175367 3175948 R identified by match to protein family HMM PF00419; fimbrial protein complement(3175367..3175948) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042282.1 CDS SNSL254_A3263 NC_011080.1 3176114 3176275 R identified by glimmer; hypothetical protein complement(3176114..3176275) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042283.1 CDS SNSL254_A3264 NC_011080.1 3176667 3177299 R hypothetical protein complement(3176667..3177299) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042284.1 CDS SNSL254_A3265 NC_011080.1 3177346 3177882 R identified by match to protein family HMM PF06316; outer membrane protein complement(3177346..3177882) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042285.1 CDS SNSL254_A3266 NC_011080.1 3177928 3178113 R hypothetical protein complement(3177928..3178113) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042286.1 CDS SNSL254_A3267 NC_011080.1 3178690 3179088 R stability determinant protein; plasmid maintenance protein complement(3178690..3179088) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042289.1 CDS SNSL254_A3270 NC_011080.1 3180024 3180824 D identified by match to protein family HMM PF07313; hypothetical protein 3180024..3180824 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042290.1 CDS SNSL254_A3272 NC_011080.1 3181109 3181861 R identified by match to protein family HMM PF01476; match to protein family HMM PF01551; hypothetical protein complement(3181109..3181861) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042291.1 CDS idi NC_011080.1 3182132 3182677 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3182132..3182677 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042292.1 CDS lysS NC_011080.1 3182753 3184270 R 'class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1'; lysyl-tRNA synthetase complement(3182753..3184270) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083646.1 CDS prfB NC_011080.1 3184280 3185161 R peptide chain release factor 2 complement(3184280..3185161) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042293.1 CDS recJ NC_011080.1 3185483 3187216 R 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ complement(3185483..3187216) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042294.1 CDS SNSL254_A3277 NC_011080.1 3187222 3187935 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC complement(3187222..3187935) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042295.1 CDS xerD NC_011080.1 3187959 3188855 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(3187959..3188855) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042296.1 CDS fldB NC_011080.1 3188911 3189489 D 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic'; flavodoxin FldB 3188911..3189489 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042297.1 CDS SNSL254_A3280 NC_011080.1 3189542 3189955 R identified by match to protein family HMM PF07254; hypothetical protein complement(3189542..3189955) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042298.1 CDS SNSL254_A3282 NC_011080.1 3189936 3190202 R identified by match to protein family HMM PF03937; hypothetical protein complement(3189936..3190202) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042299.1 CDS SNSL254_A3281 NC_011080.1 3190201 3190437 D hypothetical protein 3190201..3190437 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042300.1 CDS SNSL254_A3283 NC_011080.1 3190452 3191432 D physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; global regulator 3190452..3191432 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042301.1 CDS SNSL254_A3284 NC_011080.1 3191548 3192207 R identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin-3 complement(3191548..3192207) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042302.1 CDS SNSL254_A3285 NC_011080.1 3192368 3192682 R identified by match to protein family HMM PF04266; hypothetical protein complement(3192368..3192682) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042303.1 CDS SNSL254_A3286 NC_011080.1 3192837 3194270 D identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase 3192837..3194270 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042304.1 CDS SNSL254_A3287 NC_011080.1 3194318 3195211 R hypothetical protein complement(3194318..3195211) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042305.1 CDS gcvP NC_011080.1 3195667 3198540 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3195667..3198540) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042306.1 CDS gcvH NC_011080.1 3198703 3199092 R 'part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor'; glycine cleavage system protein H complement(3198703..3199092) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042307.1 CDS gcvT NC_011080.1 3199118 3200212 R 'catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein'; glycine cleavage system aminomethyltransferase T complement(3199118..3200212) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042308.1 CDS SNSL254_A3292 NC_011080.1 3200667 3201869 R identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; hypothetical protein complement(3200667..3201869) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042310.1 CDS ubiH NC_011080.1 3201995 3203173 R 'Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone'; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3201995..3203173) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042311.1 CDS pepP NC_011080.1 3203170 3204486 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II complement(3203170..3204486) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042312.1 CDS SNSL254_A3295 NC_011080.1 3204512 3205090 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(3204512..3205090) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042313.1 CDS SNSL254_A3296 NC_011080.1 3205257 3205586 D identified by match to protein family HMM PF05164; Z-ring-associated protein 3205257..3205586 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042314.1 CDS SNSL254_A3298 NC_011080.1 3205832 3206446 D ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 3205832..3206446 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042315.1 CDS serA NC_011080.1 3206809 3208041 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(3206809..3208041) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083647.1 CDS rpiA NC_011080.1 3208308 3208967 R ribose-5-phosphate isomerase A complement(3208308..3208967) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042316.1 CDS SNSL254_A3302 NC_011080.1 3209121 3210014 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3209121..3210014 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042317.1 CDS SNSL254_A3303 NC_011080.1 3210026 3210232 D hypothetical protein 3210026..3210232 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042318.1 CDS SNSL254_A3304 NC_011080.1 3210280 3211026 R identified by match to protein family HMM PF04402; hypothetical protein complement(3210280..3211026) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042319.1 CDS SNSL254_A3305 NC_011080.1 3211120 3211755 R Involved in the export of arginine; arginine exporter protein complement(3211120..3211755) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042321.1 CDS SNSL254_A3307 NC_011080.1 3211956 3212816 R participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS complement(3211956..3212816) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042322.1 CDS fbaA NC_011080.1 3213043 3214122 R 'catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate'; fructose-bisphosphate aldolase complement(3213043..3214122) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042323.1 CDS pgk NC_011080.1 3214225 3215388 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3214225..3215388) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042324.1 CDS epd NC_011080.1 3215410 3216456 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(3215410..3216456) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042325.1 CDS SNSL254_A3311 NC_011080.1 3216830 3217255 D identified by match to protein family HMM PF03479; hypothetical protein 3216830..3217255 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042326.1 CDS SNSL254_A3312 NC_011080.1 3217281 3217859 D signal transduction histidine kinase LytS 3217281..3217859 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042327.1 CDS SNSL254_A3313 NC_011080.1 3217860 3218567 D identified by match to protein family HMM PF02361; ABC transporter permease 3217860..3218567 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042328.1 CDS SNSL254_A3314 NC_011080.1 3218555 3219232 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3218555..3219232 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042329.1 CDS SNSL254_A3315 NC_011080.1 3219226 3219915 D identified by match to protein family HMM PF00005; cobalt ABC transporter ATPase 3219226..3219915 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042330.1 CDS frcK NC_011080.1 3219884 3220600 R fructose transport system kinase complement(3219884..3220600) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042331.1 CDS SNSL254_A3317 NC_011080.1 3220597 3221106 R identified by match to protein family HMM PF05068; DNA-binding transcriptional regulator complement(3220597..3221106) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042332.1 CDS glpX NC_011080.1 3221320 3222288 R identified by match to protein family HMM PF03320; match to protein family HMM TIGR00330; fructose-1,6-bisphosphatase II-like protein complement(3221320..3222288) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042333.1 CDS SNSL254_A3319 NC_011080.1 3222288 3223562 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; L-sorbose 1-phosphate reductase complement(3222288..3223562) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042334.1 CDS SNSL254_A3320 NC_011080.1 3223586 3224965 R identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system mannitol-specific transporter subunit IICBA complement(3223586..3224965) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042335.1 CDS cmtB NC_011080.1 3224993 3225436 R 'TolM; with CmtA (IIBC), CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein'; mannitol phosphotransferase subunit EIIA complement(3224993..3225436) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042336.1 CDS tktA NC_011080.1 3225751 3227742 R 'catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase'; transketolase complement(3225751..3227742) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083648.1 CDS SNSL254_A3323 NC_011080.1 3228018 3228776 D hypothetical protein 3228018..3228776 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042337.1 CDS speB NC_011080.1 3228877 3229797 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3228877..3229797) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042338.1 CDS SNSL254_A3325 NC_011080.1 3230002 3230892 R identified by match to protein family HMM PF00561; hydrolase complement(3230002..3230892) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042339.1 CDS SNSL254_A3326 NC_011080.1 3231151 3231645 R identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; mannitol dehydrogenase complement(3231151..3231645) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042340.1 CDS SNSL254_A3327 NC_011080.1 3231684 3232691 R identified by match to protein family HMM PF02615; ureidoglycolate dehydrogenase complement(3231684..3232691) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042341.1 CDS SNSL254_A3328 NC_011080.1 3232705 3233721 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; hypothetical protein complement(3232705..3233721) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042342.1 CDS SNSL254_A3329 NC_011080.1 3233724 3235196 R identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase complement(3233724..3235196) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042343.1 CDS SNSL254_A3331 NC_011080.1 3236428 3237177 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; Uxu operon transcriptional regulator complement(3236428..3237177) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042344.1 CDS SNSL254_A3332 NC_011080.1 3237382 3238113 R outer membrane lipoprotein complement(3237382..3238113) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042345.2 CDS speA NC_011080.1 3238258 3240234 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(3238258..3240234) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042346.1 CDS SNSL254_A3334 NC_011080.1 3240243 3240374 R hypothetical protein complement(3240243..3240374) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042347.1 CDS SNSL254_A3335 NC_011080.1 3240708 3240875 D hypothetical protein 3240708..3240875 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042348.1 CDS metK NC_011080.1 3241024 3242178 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3241024..3242178 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042349.1 CDS SNSL254_A3337 NC_011080.1 3242206 3242331 R identified by glimmer; hypothetical protein complement(3242206..3242331) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042350.1 CDS galP NC_011080.1 3242671 3244065 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; galactose-proton symporter 3242671..3244065 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042351.1 CDS sprT NC_011080.1 3244144 3244641 D identified by match to protein family HMM PF03926; hypothetical protein 3244144..3244641 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042352.1 CDS endA NC_011080.1 3244736 3245443 D identified by match to protein family HMM PF04231; endonuclease I 3244736..3245443 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042353.1 CDS SNSL254_A3341 NC_011080.1 3245472 3246251 D 'in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase'; 16S ribosomal RNA methyltransferase RsmE 3245472..3246251 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042354.1 CDS gshB NC_011080.1 3246271 3247218 D 'catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione'; glutathione synthetase 3246271..3247218 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042355.1 CDS SNSL254_A3343 NC_011080.1 3247434 3247997 D identified by match to protein family HMM PF02622; hypothetical protein 3247434..3247997 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042356.1 CDS SNSL254_A3344 NC_011080.1 3247997 3248413 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; holliday junction resolvase-like protein 3247997..3248413 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042357.1 CDS SNSL254_A3345 NC_011080.1 3248460 3249146 R identified by match to protein family HMM PF09339; regulatory protein IclR complement(3248460..3249146) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042358.1 CDS SNSL254_A3346 NC_011080.1 3249279 3250259 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein complement(3249279..3250259) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042359.1 CDS SNSL254_A3347 NC_011080.1 3250277 3250981 D identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; alanine racemase 3250277..3250981 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042360.1 CDS SNSL254_A3348 NC_011080.1 3251000 3251566 D identified by match to protein family HMM PF02325; hypothetical protein 3251000..3251566 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042361.1 CDS SNSL254_A3349 NC_011080.1 3251563 3251853 D identified by match to protein family HMM PF02594; match to protein family HMM TIGR00251; hypothetical protein 3251563..3251853 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042362.1 CDS rdgB NC_011080.1 3251861 3252454 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3251861..3252454 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042363.1 CDS SNSL254_A3351 NC_011080.1 3252447 3253583 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3252447..3253583 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042364.1 CDS SNSL254_A3352 NC_011080.1 3253675 3254682 R identified by match to protein family HMM PF06717; hypothetical protein complement(3253675..3254682) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042365.1 CDS ansB NC_011080.1 3254815 3255861 R 'catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis'; L-asparaginase II complement(3254815..3255861) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042366.1 CDS SNSL254_A3354 NC_011080.1 3255880 3256032 R hypothetical protein complement(3255880..3256032) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042367.1 CDS SNSL254_A3355 NC_011080.1 3256050 3256769 R hypothetical protein complement(3256050..3256769) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042368.1 CDS SNSL254_A3356 NC_011080.1 3256819 3257145 R identified by match to protein family HMM PF04320; hypothetical protein complement(3256819..3257145) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042369.1 CDS trmB NC_011080.1 3257145 3257864 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3257145..3257864) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042370.1 CDS mutY NC_011080.1 3258019 3259071 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; adenine DNA glycosylase 3258019..3259071 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042371.1 CDS SNSL254_A3359 NC_011080.1 3259099 3259374 D identified by match to protein family HMM PF04362; hypothetical protein 3259099..3259374 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042372.1 CDS mltC NC_011080.1 3259487 3260572 D 'Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues'; murein transglycosylase C 3259487..3260572 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042374.1 CDS nupG NC_011080.1 3260789 3262045 D identified by match to protein family HMM PF03825; match to protein family HMM TIGR00889; nucleoside permease NupG 3260789..3262045 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042375.1 CDS speC NC_011080.1 3262107 3264242 R identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase complement(3262107..3264242) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042376.1 CDS SNSL254_A3364 NC_011080.1 3264515 3264628 D identified by glimmer; hypothetical protein 3264515..3264628 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042377.1 CDS SNSL254_A3365 NC_011080.1 3264667 3265374 D identified by match to protein family HMM PF04474; hypothetical protein 3264667..3265374 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042378.1 CDS SNSL254_A3367 NC_011080.1 3266159 3267484 R identified by match to protein family HMM PF02550; 4-hydroxybutyrate CoA-transferase complement(3266159..3267484) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042379.1 CDS SNSL254_A3368 NC_011080.1 3267509 3268036 R identified by match to protein family HMM PF01575; hypothetical protein complement(3267509..3268036) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042380.1 CDS SNSL254_A3369 NC_011080.1 3268060 3268902 R identified by match to protein family HMM PF03328; HpcH/HpaI aldolase/citrate lyase family protein complement(3268060..3268902) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042381.1 CDS SNSL254_A3370 NC_011080.1 3268994 3269872 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; hypothetical protein 3268994..3269872 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042382.1 CDS SNSL254_A3371 NC_011080.1 3269920 3271659 R identified by match to protein family HMM PF00884; arylsulfatase complement(3269920..3271659) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042383.1 CDS SNSL254_A3372 NC_011080.1 3271728 3272912 R identified by match to protein family HMM PF04055; arylsulfatase complement(3271728..3272912) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042384.1 CDS SNSL254_A3373 NC_011080.1 3273424 3274107 D identified by match to protein family HMM PF00196; LysR family transcriptional regulator 3273424..3274107 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042385.1 CDS SNSL254_A3374 NC_011080.1 3274212 3274769 R hypothetical protein complement(3274212..3274769) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042386.1 CDS SNSL254_A3375 NC_011080.1 3274747 3276246 R identified by match to protein family HMM PF00324; transporter complement(3274747..3276246) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042387.1 CDS SNSL254_A3376 NC_011080.1 3276239 3276382 R identified by glimmer; hypothetical protein complement(3276239..3276382) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042388.1 CDS SNSL254_A3377 NC_011080.1 3276455 3276829 R identified by match to protein family HMM PF05899; hypothetical protein complement(3276455..3276829) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042389.1 CDS SNSL254_A3378 NC_011080.1 3276844 3278145 R identified by match to protein family HMM PF01266; tyramine oxidase complement(3276844..3278145) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042390.1 CDS SNSL254_A3379 NC_011080.1 3278307 3279791 D identified by match to protein family HMM PF00171; phenylacetaldehyde dehydrogenase 3278307..3279791 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042392.2 CDS iraD NC_011080.1 3279927 3280310 R inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein complement(3279927..3280310) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042393.1 CDS SNSL254_A3382 NC_011080.1 3280307 3280792 R identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hypothetical protein complement(3280307..3280792) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042394.1 CDS SNSL254_A3383 NC_011080.1 3281100 3281282 D hypothetical protein 3281100..3281282 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042395.1 CDS SNSL254_A3384 NC_011080.1 3281517 3282440 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(3281517..3282440) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042396.1 CDS SNSL254_A3385 NC_011080.1 3282479 3283357 R identified by match to protein family HMM PF00795; amidohydrolase complement(3282479..3283357) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042397.1 CDS exuT NC_011080.1 3283753 3285057 R identified by match to protein family HMM PF07690; hexuronate transporter complement(3283753..3285057) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042398.1 CDS uxuA NC_011080.1 3285462 3286646 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3285462..3286646 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042399.1 CDS SNSL254_A3388 NC_011080.1 3286757 3288229 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 3286757..3288229 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042400.1 CDS uxaC NC_011080.1 3288241 3289653 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3288241..3289653 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042401.1 CDS SNSL254_A3390 NC_011080.1 3289953 3291008 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(3289953..3291008) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042403.1 CDS SNSL254_A3392 NC_011080.1 3291678 3293534 R catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3291678..3293534) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042404.1 CDS SNSL254_A3393 NC_011080.1 3293761 3294627 D YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase 3293761..3294627 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042405.1 CDS SNSL254_A3394 NC_011080.1 3294695 3295408 R molybdate ABC transporter substrate-binding protein complement(3294695..3295408) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042406.1 CDS SNSL254_A3395 NC_011080.1 3295405 3296457 R identified by match to protein family HMM PF01497; periplasmic binding protein complement(3295405..3296457) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042407.1 CDS hypC NC_011080.1 3296533 3296781 R identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase 2 accessory protein HypG complement(3296533..3296781) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042408.1 CDS hypA NC_011080.1 3296809 3297150 R plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF complement(3296809..3297150) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042409.1 CDS SNSL254_A3398 NC_011080.1 3297143 3297631 R hydrogenase 2-specific chaperone complement(3297143..3297631) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042410.1 CDS hybD NC_011080.1 3297624 3298118 R protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase complement(3297624..3298118) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042411.1 CDS hybC NC_011080.1 3298118 3299821 R involved in hydrogen uptake; hydrogenase 2 large subunit complement(3298118..3299821) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042412.1 CDS hybB NC_011080.1 3299818 3300996 R 'HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits'; hydrogenase 2 b cytochrome subunit complement(3299818..3300996) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042413.1 CDS hybA NC_011080.1 3300986 3301972 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA complement(3300986..3301972) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042414.1 CDS hyb0 NC_011080.1 3301975 3303093 R involved in hydrogen uptake; hydrogenase 2 small subunit complement(3301975..3303093) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042415.1 CDS SNSL254_A3404 NC_011080.1 3303101 3303286 R hypothetical protein complement(3303101..3303286) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042416.1 CDS SNSL254_A3405 NC_011080.1 3303283 3303570 R hypothetical protein complement(3303283..3303570) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042417.1 CDS SNSL254_A3406 NC_011080.1 3303655 3305298 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(3303655..3305298) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042418.1 CDS SNSL254_A3407 NC_011080.1 3305605 3306099 R identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645; hypothetical protein complement(3305605..3306099) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042419.1 CDS SNSL254_A3408 NC_011080.1 3306378 3306881 R hypothetical protein complement(3306378..3306881) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042420.1 CDS SNSL254_A3409 NC_011080.1 3306985 3307395 D hypothetical protein 3306985..3307395 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042421.1 CDS SNSL254_A3410 NC_011080.1 3307382 3307786 D hypothetical protein 3307382..3307786 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042422.1 CDS SNSL254_A3411 NC_011080.1 3307910 3308794 D identified by match to protein family HMM PF00106; oxidoreductase 3307910..3308794 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042423.1 CDS exbD NC_011080.1 3308907 3309332 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD complement(3308907..3309332) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042424.1 CDS exbB NC_011080.1 3309339 3310073 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB complement(3309339..3310073) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042425.1 CDS SNSL254_A3414 NC_011080.1 3310066 3310203 R hypothetical protein complement(3310066..3310203) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042426.1 CDS metC NC_011080.1 3310325 3311512 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3310325..3311512 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042427.1 CDS SNSL254_A3416 NC_011080.1 3311652 3312311 D identified by match to protein family HMM PF09335; hypothetical protein 3311652..3312311 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042428.1 CDS SNSL254_A3418 NC_011080.1 3313264 3313380 R identified by glimmer; hypothetical protein complement(3313264..3313380) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042429.1 CDS SNSL254_A3419 NC_011080.1 3313467 3314630 D identified by match to protein family HMM PF00465; alcohol dehydrogenase 3313467..3314630 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042430.1 CDS dkgA NC_011080.1 3314736 3315563 D 'methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate'; 2,5-diketo-D-gluconate reductase A 3314736..3315563 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042431.1 CDS SNSL254_A3422 NC_011080.1 3317259 3317714 D identified by match to protein family HMM PF01230; histidine triad (HIT) protein 3317259..3317714 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042432.1 CDS SNSL254_A3423 NC_011080.1 3317872 3318066 R identified by glimmer; hypothetical protein complement(3317872..3318066) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042433.1 CDS SNSL254_A3424 NC_011080.1 3318268 3320439 R identified by match to protein family HMM PF04055; match to protein family HMM PF08497; hypothetical protein complement(3318268..3320439) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042434.1 CDS SNSL254_A3425 NC_011080.1 3320927 3321910 D identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter subunit DctP 3320927..3321910 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042435.1 CDS SNSL254_A3426 NC_011080.1 3321952 3322434 D identified by match to protein family HMM PF04290; tripartite ATP-independent periplasmic 3321952..3322434 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042436.1 CDS SNSL254_A3427 NC_011080.1 3322445 3323752 D identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; hypothetical protein 3322445..3323752 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042437.1 CDS SNSL254_A3428 NC_011080.1 3323797 3325209 R identified by match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; repressor protein for FtsI complement(3323797..3325209) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042438.1 CDS SNSL254_A3429 NC_011080.1 3325283 3326020 R identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3325283..3326020) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042439.1 CDS parC NC_011080.1 3326277 3328535 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3326277..3328535) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042440.1 CDS SNSL254_A3431 NC_011080.1 3328646 3329512 R identified by match to protein family HMM PF00165; match to protein family HMM PF06445; transcription activator, effector binding complement(3328646..3329512) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042441.1 CDS SNSL254_A3432 NC_011080.1 3329584 3329976 R identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein complement(3329584..3329976) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042442.1 CDS SNSL254_A3433 NC_011080.1 3330128 3330787 D response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3330128..3330787 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042443.1 CDS SNSL254_A3434 NC_011080.1 3330784 3332133 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein QseC 3330784..3332133 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042444.1 CDS SNSL254_A3435 NC_011080.1 3332127 3332243 D identified by glimmer; hypothetical protein 3332127..3332243 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042445.1 CDS SNSL254_A3436 NC_011080.1 3332240 3332821 D identified by match to protein family HMM PF02525; NADPH-specific quinone oxidoreductase 3332240..3332821 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042446.1 CDS SNSL254_A3437 NC_011080.1 3332853 3333167 D identified by match to protein family HMM PF03992; hypothetical protein 3332853..3333167 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042447.1 CDS SNSL254_A3438 NC_011080.1 3333172 3333285 R identified by glimmer; hypothetical protein complement(3333172..3333285) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042448.1 CDS parE NC_011080.1 3333292 3335184 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3333292..3335184) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042449.1 CDS yqiA NC_011080.1 3335212 3335793 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA complement(3335212..3335793) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042450.1 CDS icc NC_011080.1 3335793 3336620 R identified by match to protein family HMM PF00149; match to protein family HMM PF08413; cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3335793..3336620) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042451.1 CDS SNSL254_A3442 NC_011080.1 3336645 3337067 R identified by match to protein family HMM PF06853; hypothetical protein complement(3336645..3337067) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042452.1 CDS nudF NC_011080.1 3337064 3337696 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase complement(3337064..3337696) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042453.1 CDS tolC NC_011080.1 3337903 3339372 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3337903..3339372 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042454.1 CDS SNSL254_A3445 NC_011080.1 3339585 3340256 D hypothetical protein 3339585..3340256 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042455.1 CDS SNSL254_A3446 NC_011080.1 3340262 3341425 D identified by match to protein family HMM PF03738; glutathionylspermidine synthase 3340262..3341425 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042456.1 CDS SNSL254_A3447 NC_011080.1 3341487 3342275 R 'seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine'; hypothetical protein complement(3341487..3342275) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042457.1 CDS SNSL254_A3448 NC_011080.1 3342416 3343189 D identified by match to protein family HMM PF02535; zinc transporter ZupT 3342416..3343189 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042458.1 CDS SNSL254_A3449 NC_011080.1 3343256 3343432 R hypothetical protein complement(3343256..3343432) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042459.1 CDS SNSL254_A3450 NC_011080.1 3343832 3345628 D identified by match to protein family HMM PF05935; arylsulfate sulfotransferase 3343832..3345628 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042460.1 CDS SNSL254_A3451 NC_011080.1 3345648 3346319 D identified by match to protein family HMM PF01323; disulfide isomerase 3345648..3346319 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042461.1 CDS SNSL254_A3452 NC_011080.1 3346334 3347011 D disulfide oxidoreductase 3346334..3347011 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042462.1 CDS ribB NC_011080.1 3347182 3347835 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3347182..3347835) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042463.1 CDS SNSL254_A3455 NC_011080.1 3348272 3348571 D identified by match to protein family HMM PF04380; hypothetical protein 3348272..3348571 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042464.1 CDS SNSL254_A3456 NC_011080.1 3348645 3348854 R Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS complement(3348645..3348854) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042465.1 CDS SNSL254_A3457 NC_011080.1 3349112 3349732 D identified by match to protein family HMM PF07290; hypothetical protein 3349112..3349732 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042466.1 CDS SNSL254_A3458 NC_011080.1 3349751 3351430 D identified by match to protein family HMM PF01145; hypothetical protein 3349751..3351430 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042467.1 CDS SNSL254_A3460 NC_011080.1 3351889 3353322 R 'catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose'; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3351889..3353322) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042468.1 CDS glnE NC_011080.1 3353370 3356213 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3353370..3356213) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042469.1 CDS SNSL254_A3462 NC_011080.1 3356331 3357632 R identified by match to protein family HMM PF01928; match to protein family HMM PF05235; adenylate cyclase complement(3356331..3357632) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042470.1 CDS SNSL254_A3463 NC_011080.1 3357874 3358488 D identified by match to protein family HMM PF08239; signal transduction protein 3357874..3358488 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042471.1 CDS cca NC_011080.1 3358551 3359792 D 'catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases'; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3358551..3359792 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042472.1 CDS bacA NC_011080.1 3359897 3360718 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3359897..3360718) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042473.1 CDS folB NC_011080.1 3360816 3361175 R 'catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin'; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3360816..3361175) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042474.1 CDS SNSL254_A3467 NC_011080.1 3361282 3361893 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3361282..3361893 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042475.1 CDS gcp NC_011080.1 3362143 3363156 R 'in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity'; DNA-binding/iron metalloprotein/AP endonuclease complement(3362143..3363156) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042476.1 CDS rpsU NC_011080.1 3363384 3363599 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3363384..3363599 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042477.1 CDS dnaG NC_011080.1 3363835 3365580 D synthesizes RNA primers at the replication forks; DNA primase 3363835..3365580 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042478.1 CDS rpoD NC_011080.1 3365730 3367577 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3365730..3367577 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042479.1 CDS SNSL254_A3472 NC_011080.1 3367701 3368207 R identified by match to protein family HMM PF03167; G/U mismatch-specific DNA glycosylase complement(3367701..3368207) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042480.1 CDS SNSL254_A3474 NC_011080.1 3368488 3369255 R identified by match to protein family HMM PF04954; match to protein family HMM PF08021; siderophore-interacting protein complement(3368488..3369255) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042481.1 CDS SNSL254_A3475 NC_011080.1 3369490 3370134 D identified by match to protein family HMM PF03551; PadR family transcriptional regulator 3369490..3370134 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042482.1 CDS SNSL254_A3476 NC_011080.1 3370131 3371696 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein II complement(3370131..3371696) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042483.1 CDS SNSL254_A3477 NC_011080.1 3372084 3373604 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08447; match to protein family HMM TIGR00229; aerotaxis receptor complement(3372084..3373604) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042484.1 CDS SNSL254_A3478 NC_011080.1 3373631 3373771 D hypothetical protein 3373631..3373771 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042485.1 CDS ygjG NC_011080.1 3374034 3375413 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3374034..3375413 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042486.1 CDS SNSL254_A3480 NC_011080.1 3375584 3377602 D identified by match to protein family HMM PF00724; match to protein family HMM PF07992; FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase family protein 3375584..3377602 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042487.1 CDS SNSL254_A3481 NC_011080.1 3377683 3378819 R identified by match to protein family HMM PF05175; match to protein family HMM PF08242; methyltransferase family protein complement(3377683..3378819) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042488.1 CDS SNSL254_A3482 NC_011080.1 3378905 3379402 D identified by match to protein family HMM PF01863; hypothetical protein 3378905..3379402 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042489.1 CDS SNSL254_A3483 NC_011080.1 3379554 3380246 D identified by match to protein family HMM PF02698; SanA protein 3379554..3380246 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042490.1 CDS SNSL254_A3484 NC_011080.1 3380335 3381333 D identified by match to protein family HMM PF01408; oxidoreductase YgjR 3380335..3381333 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042491.1 CDS SNSL254_A3485 NC_011080.1 3381604 3382572 D identified by match to protein family HMM PF03741; inner membrane protein alx 3381604..3382572 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042492.1 CDS SNSL254_A3486 NC_011080.1 3382827 3384071 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3382827..3384071 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042493.1 CDS SNSL254_A3487 NC_011080.1 3384521 3385183 D identified by match to protein family HMM PF09335; hypothetical protein 3384521..3385183 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042494.1 CDS SNSL254_A3488 NC_011080.1 3385244 3385570 D hypothetical protein 3385244..3385570 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042495.1 CDS SNSL254_A3489 NC_011080.1 3385715 3386083 D identified by match to protein family HMM PF06476; hypothetical protein 3385715..3386083 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042496.1 CDS SNSL254_A3490 NC_011080.1 3386125 3386430 D identified by match to protein family HMM PF05957; hypothetical protein 3386125..3386430 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042497.1 CDS SNSL254_A3491 NC_011080.1 3386433 3386831 D hypothetical protein 3386433..3386831 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042498.1 CDS SNSL254_A3492 NC_011080.1 3386828 3387127 D hypothetical protein 3386828..3387127 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042499.1 CDS SNSL254_A3493 NC_011080.1 3387282 3387767 D identified by match to protein family HMM PF07681; hypothetical protein 3387282..3387767 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042500.1 CDS SNSL254_A3494 NC_011080.1 3387835 3388821 D glutathione S-transferase 3387835..3388821 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042501.1 CDS SNSL254_A3495 NC_011080.1 3388945 3389310 D identified by match to protein family HMM PF05656; hypothetical protein 3388945..3389310 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042502.1 CDS SNSL254_A3496 NC_011080.1 3389349 3390245 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(3389349..3390245) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042503.1 CDS SNSL254_A3499 NC_011080.1 3391074 3391238 D hypothetical protein 3391074..3391238 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042504.1 CDS SNSL254_A3500 NC_011080.1 3391351 3392661 R identified by match to protein family HMM PF06354; hypothetical protein complement(3391351..3392661) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042505.1 CDS SNSL254_A3501 NC_011080.1 3392687 3394126 R identified by match to protein family HMM TIGR00814; inner membrane transport protein YhaO complement(3392687..3394126) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042506.1 CDS SNSL254_A3502 NC_011080.1 3394334 3395698 R identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase complement(3394334..3395698) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042507.1 CDS pflB NC_011080.1 3395768 3398062 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase complement(3395768..3398062) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042508.1 CDS ackA NC_011080.1 3398096 3399304 R catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase complement(3398096..3399304) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042509.1 CDS tdcC NC_011080.1 3399371 3400702 R involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC complement(3399371..3400702) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042510.1 CDS tdcB NC_011080.1 3400723 3401712 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase complement(3400723..3401712) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042511.1 CDS SNSL254_A3507 NC_011080.1 3401810 3402748 R regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA complement(3401810..3402748) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083649.1 CDS SNSL254_A3509 NC_011080.1 3403983 3405128 R glycerate kinase complement(3403983..3405128) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042512.1 CDS garR NC_011080.1 3405226 3406116 R catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase complement(3405226..3406116) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042513.1 CDS garL NC_011080.1 3406142 3406912 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3406142..3406912) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042514.1 CDS SNSL254_A3512 NC_011080.1 3407028 3407168 R identified by glimmer; hypothetical protein complement(3407028..3407168) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042515.1 CDS garD NC_011080.1 3407442 3409013 D identified by match to protein family HMM PF04295; match to protein family HMM PF08666; match to protein family HMM TIGR03248; galactarate dehydratase 3407442..3409013 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042516.1 CDS gatY NC_011080.1 3409133 3410125 D 'catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway'; tagatose-bisphosphate aldolase 3409133..3410125 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042517.1 CDS SNSL254_A3515 NC_011080.1 3410191 3411516 D identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810; D-tagatose-bisphosphate aldolase non-catalytic subunit 3410191..3411516 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042518.1 CDS SNSL254_A3516 NC_011080.1 3411531 3411995 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 3411531..3411995 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042519.1 CDS SNSL254_A3517 NC_011080.1 3412026 3412310 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 3412026..3412310 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042520.1 CDS SNSL254_A3518 NC_011080.1 3412314 3413687 D identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system galactitol-specific transporter subunit IIC 3412314..3413687 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042521.1 CDS SNSL254_A3519 NC_011080.1 3413731 3414774 D Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3413731..3414774 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042522.1 CDS SNSL254_A3520 NC_011080.1 3414885 3415658 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; galactitol utilization operon repressor 3414885..3415658 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042523.1 CDS SNSL254_A3521 NC_011080.1 3415816 3416679 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein complement(3415816..3416679) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042524.1 CDS SNSL254_A3522 NC_011080.1 3416743 3418785 D identified by match to protein family HMM PF04348; LppC superfamily 3416743..3418785 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042525.1 CDS SNSL254_A3523 NC_011080.1 3418743 3419138 D identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 3418743..3419138 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042526.1 CDS diaA NC_011080.1 3419160 3419750 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3419160..3419750 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042527.1 CDS SNSL254_A3525 NC_011080.1 3419760 3420335 D identified by match to protein family HMM PF04972; hypothetical protein 3419760..3420335 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042528.1 CDS SNSL254_A3526 NC_011080.1 3420402 3421037 R identified by match to protein family HMM PF01370; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein complement(3420402..3421037) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042529.1 CDS SNSL254_A3527 NC_011080.1 3421168 3421686 D identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; intracellular peptidase, PfpI family 3421168..3421686 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042530.1 CDS SNSL254_A3529 NC_011080.1 3421666 3422109 R hypothetical protein complement(3421666..3422109) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042531.1 CDS SNSL254_A3528 NC_011080.1 3422102 3422464 D identified by match to protein family HMM PF01541; GIY-YIG nuclease superfamily protein 3422102..3422464 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042532.1 CDS SNSL254_A3530 NC_011080.1 3422451 3422954 R identified by match to protein family HMM PF00583; acetyltransferase, GNAT family complement(3422451..3422954) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042533.1 CDS SNSL254_A3531 NC_011080.1 3422948 3423472 R identified by match to protein family HMM PF02036; sterol-binding protein complement(3422948..3423472) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042534.1 CDS SNSL254_A3532 NC_011080.1 3423689 3424684 D identified by match to protein family HMM PF01136; peptidase, U32 family 3423689..3424684 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042535.1 CDS SNSL254_A3533 NC_011080.1 3424693 3425571 D identified by match to protein family HMM PF01136; peptidase, U32 family 3424693..3425571 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042536.1 CDS SNSL254_A3534 NC_011080.1 3425749 3426756 D identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558; hypothetical protein 3425749..3426756 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042537.1 CDS mtr NC_011080.1 3426847 3428091 R tryptophan transporter of high affinity; tryptophan permease complement(3426847..3428091) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042538.1 CDS deaD NC_011080.1 3428245 3430134 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD complement(3428245..3430134) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042539.1 CDS nlpI NC_011080.1 3430313 3431197 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3430313..3431197) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083650.1 CDS pnp NC_011080.1 3431307 3433472 R polyribonucleotide nucleotidyltransferase complement(3431307..3433472) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042540.1 CDS rpsO NC_011080.1 3433684 3433953 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3433684..3433953) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042541.1 CDS truB NC_011080.1 3434104 3435048 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3434104..3435048) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042542.1 CDS rbfA NC_011080.1 3435048 3435449 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3435048..3435449) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042543.1 CDS infB NC_011080.1 3435670 3438348 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3435670..3438348) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042544.1 CDS nusA NC_011080.1 3438373 3439875 R 'modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination'; transcription elongation factor NusA complement(3438373..3439875) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042545.1 CDS SNSL254_A3546 NC_011080.1 3439903 3440367 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3439903..3440367) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042546.1 CDS SNSL254_A3548 NC_011080.1 3440747 3440899 D identified by glimmer; hypothetical protein 3440747..3440899 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042547.1 CDS argG NC_011080.1 3440983 3442326 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3440983..3442326 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042548.1 CDS SNSL254_A3550 NC_011080.1 3442412 3443476 R hypothetical protein complement(3442412..3443476) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042549.1 CDS secG NC_011080.1 3443912 3444244 R identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG complement(3443912..3444244) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042550.1 CDS glmM NC_011080.1 3444467 3445804 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3444467..3445804) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042551.1 CDS folP NC_011080.1 3445797 3446645 R 'catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate'; dihydropteroate synthase complement(3445797..3446645) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042552.1 CDS hflB NC_011080.1 3446749 3448692 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease complement(3446749..3448692) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042553.1 CDS rrmJ NC_011080.1 3448787 3449413 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase complement(3448787..3449413) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042554.1 CDS SNSL254_A3557 NC_011080.1 3449501 3449833 D RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3449501..3449833 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042555.1 CDS greA NC_011080.1 3449989 3450465 R 'necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus'; transcription elongation factor GreA complement(3449989..3450465) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042556.1 CDS SNSL254_A3559 NC_011080.1 3450519 3450647 R identified by glimmer; hypothetical protein complement(3450519..3450647) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042557.1 CDS dacB NC_011080.1 3450713 3452146 D 'penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 3450713..3452146 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042559.1 CDS obgE NC_011080.1 3452277 3453449 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3452277..3453449) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042560.1 CDS SNSL254_A3563 NC_011080.1 3453465 3454430 R identified by match to protein family HMM PF00892; transporter complement(3453465..3454430) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042561.1 CDS rpmA NC_011080.1 3454560 3454817 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3454560..3454817) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042562.1 CDS rplU NC_011080.1 3454837 3455148 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(3454837..3455148) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042563.2 CDS ispB NC_011080.1 3455406 3456377 D identified by match to protein family HMM PF00348; octaprenyl diphosphate synthase 3455406..3456377 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042564.1 CDS SNSL254_A3567 NC_011080.1 3456609 3456896 D activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3456609..3456896 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042565.1 CDS murA NC_011080.1 3456954 3458213 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3456954..3458213) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042566.1 CDS SNSL254_A3569 NC_011080.1 3458267 3458521 R identified by match to protein family HMM PF01722; hypothetical protein complement(3458267..3458521) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042567.1 CDS SNSL254_A3570 NC_011080.1 3458709 3459005 R anti-sigma factor antagonist complement(3458709..3459005) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042568.1 CDS ttg2D NC_011080.1 3459005 3459640 R identified by match to protein family HMM PF05494; toluene tolerance protein Ttg2D complement(3459005..3459640) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042569.1 CDS SNSL254_A3572 NC_011080.1 3459659 3460210 R identified by match to protein family HMM PF02470; Mce family protein complement(3459659..3460210) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042570.1 CDS SNSL254_A3573 NC_011080.1 3460215 3460997 R identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; toluene ABC transporter permease complement(3460215..3460997) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042571.1 CDS SNSL254_A3574 NC_011080.1 3461005 3461817 R ATP-binding subunit of a ABC toluene efflux transporter; ABC transporter ATP-binding protein complement(3461005..3461817) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042572.1 CDS SNSL254_A3575 NC_011080.1 3462030 3463007 D YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 3462030..3463007 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042573.1 CDS kdsD NC_011080.1 3463021 3464007 D identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; D-arabinose 5-phosphate isomerase 3463021..3464007 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042574.1 CDS kdsC NC_011080.1 3464028 3464594 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3464028..3464594 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042575.1 CDS SNSL254_A3578 NC_011080.1 3464591 3465166 D identified by match to protein family HMM PF06835; hypothetical protein 3464591..3465166 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042576.1 CDS lptA NC_011080.1 3465135 3465689 D 'LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system'; lipopolysaccharide transport periplasmic protein LptA 3465135..3465689 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042577.1 CDS lptB NC_011080.1 3465696 3466421 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3465696..3466421 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042578.1 CDS rpoN NC_011080.1 3466469 3467902 D 'sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen'; RNA polymerase factor sigma-54 3466469..3467902 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042579.1 CDS yfiA NC_011080.1 3467925 3468212 D YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; sigma(54) modulation protein 3467925..3468212 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042580.1 CDS ptsN NC_011080.1 3468330 3468821 D identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3468330..3468821 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042581.1 CDS SNSL254_A3584 NC_011080.1 3468867 3469721 D identified by match to protein family HMM PF03668; hypothetical protein 3468867..3469721 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042582.1 CDS ptsO NC_011080.1 3469718 3469990 D N-regulated PTS system (Npr); identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase Npr 3469718..3469990 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042583.1 CDS SNSL254_A3586 NC_011080.1 3470239 3470871 D hypothetical protein 3470239..3470871 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042584.1 CDS mtgA NC_011080.1 3470946 3471674 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(3470946..3471674) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042585.1 CDS elbB NC_011080.1 3471671 3472324 R identified by match to protein family HMM PF01965; isoprenoid biosynthesis protein complement(3471671..3472324) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042586.1 CDS SNSL254_A3590 NC_011080.1 3472551 3474887 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB complement(3472551..3474887) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042587.1 CDS SNSL254_A3591 NC_011080.1 3474981 3475910 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; hypothetical protein complement(3474981..3475910) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083651.1 CDS gltB NC_011080.1 3476582 3481042 D glutamate synthase large subunit 3476582..3481042 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042588.1 CDS gltD NC_011080.1 3481052 3482470 D 'glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate'; glutamate synthase subunit beta 3481052..3482470 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042589.1 CDS codB NC_011080.1 3483896 3485149 D identified by match to protein family HMM PF02133; cytosine permease 3483896..3485149 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042590.1 CDS SNSL254_A3597 NC_011080.1 3485136 3486416 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3485136..3486416 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042591.1 CDS SNSL254_A3598 NC_011080.1 3486499 3486966 R identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein complement(3486499..3486966) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042592.1 CDS SNSL254_A3599 NC_011080.1 3486963 3487838 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase complement(3486963..3487838) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042593.1 CDS SNSL254_A3600 NC_011080.1 3487835 3488524 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(3487835..3488524) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042594.1 CDS SNSL254_A3601 NC_011080.1 3488571 3490061 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00891; sialic acid transporter complement(3488571..3490061) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042595.1 CDS nanA NC_011080.1 3490177 3491070 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(3490177..3491070) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042596.1 CDS SNSL254_A3603 NC_011080.1 3491205 3491987 R Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR complement(3491205..3491987) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042597.1 CDS sspB NC_011080.1 3492105 3492605 R identified by match to protein family HMM PF04386; ClpXP protease specificity-enhancing factor complement(3492105..3492605) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042598.1 CDS sspA NC_011080.1 3492611 3493249 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3492611..3493249) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083652.1 CDS SNSL254_A3606 NC_011080.1 3493512 3494306 R hypothetical protein complement(3493512..3494306) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042599.1 CDS rpsI NC_011080.1 3494464 3494856 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3494464..3494856) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042600.1 CDS rplM NC_011080.1 3494872 3495300 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3494872..3495300) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042601.1 CDS SNSL254_A3609 NC_011080.1 3495602 3496726 R identified by match to protein family HMM PF03969; ATPase complement(3495602..3496726) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042602.1 CDS SNSL254_A3610 NC_011080.1 3496919 3497317 D identified by match to protein family HMM PF06295; cytochrome d ubiquinol oxidase subunit III 3496919..3497317 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042603.1 CDS SNSL254_A3611 NC_011080.1 3497474 3498841 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine endoprotease 3497474..3498841 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042604.1 CDS degS NC_011080.1 3498934 3500004 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02038; serine endoprotease 3498934..3500004 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042605.2 CDS SNSL254_A3613 NC_011080.1 3500038 3500769 R hypothetical protein complement(3500038..3500769) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042606.1 CDS SNSL254_A3614 NC_011080.1 3500789 3502090 R identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta complement(3500789..3502090) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042607.1 CDS oadA NC_011080.1 3502103 3503872 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(3502103..3503872) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042608.1 CDS SNSL254_A3616 NC_011080.1 3503888 3504130 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(3503888..3504130) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042609.1 CDS SNSL254_A3617 NC_011080.1 3504287 3504904 R Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta complement(3504287..3504904) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042610.1 CDS SNSL254_A3618 NC_011080.1 3504904 3505803 R Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha complement(3504904..3505803) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042611.1 CDS SNSL254_A3619 NC_011080.1 3505836 3507104 R identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00785; anion transporter complement(3505836..3507104) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042612.1 CDS SNSL254_A3620 NC_011080.1 3507315 3507980 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator complement(3507315..3507980) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042613.1 CDS SNSL254_A3621 NC_011080.1 3507967 3508596 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(3507967..3508596) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042614.1 CDS mdh NC_011080.1 3508716 3509654 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(3508716..3509654) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042615.1 CDS argR NC_011080.1 3510069 3510539 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 3510069..3510539 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042616.1 CDS SNSL254_A3624 NC_011080.1 3510904 3511167 D identified by match to protein family HMM PF07338; hypothetical protein 3510904..3511167 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042617.1 CDS SNSL254_A3625 NC_011080.1 3511271 3511537 D identified by match to protein family HMM PF07338; hypothetical protein 3511271..3511537 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042618.1 CDS SNSL254_A3626 NC_011080.1 3511597 3511869 R hypothetical protein complement(3511597..3511869) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042619.1 CDS aaeB NC_011080.1 3512041 3514008 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB complement(3512041..3514008) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042620.1 CDS aaeA NC_011080.1 3514014 3514946 R 'with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate'; p-hydroxybenzoic acid efflux subunit AaeA complement(3514014..3514946) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042621.1 CDS aaeX NC_011080.1 3514954 3515157 R membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein complement(3514954..3515157) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042622.1 CDS aaeR NC_011080.1 3515339 3516268 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 3515339..3516268 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042623.1 CDS tldD NC_011080.1 3516391 3517836 R 'responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA'; protease TldD complement(3516391..3517836) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042624.1 CDS SNSL254_A3632 NC_011080.1 3517981 3521781 R identified by match to protein family HMM TIGR02099; hypothetical protein complement(3517981..3521781) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042625.1 CDS cafA NC_011080.1 3521888 3523357 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(3521888..3523357) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042626.1 CDS maf NC_011080.1 3523347 3523940 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(3523347..3523940) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042627.1 CDS lytS NC_011080.1 3523949 3524440 R part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD complement(3523949..3524440) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042628.1 CDS mreC NC_011080.1 3524440 3525492 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3524440..3525492) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042629.1 CDS mreB NC_011080.1 3525557 3526600 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3525557..3526600) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042630.1 CDS SNSL254_A3638 NC_011080.1 3526908 3528848 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(3526908..3528848) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042631.1 CDS SNSL254_A3639 NC_011080.1 3529052 3530026 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823; hypothetical protein 3529052..3530026 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042632.1 CDS SNSL254_A3640 NC_011080.1 3530139 3531143 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 3530139..3531143 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042633.1 CDS SNSL254_A3641 NC_011080.1 3531144 3531743 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 3531144..3531743 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042634.1 CDS accB NC_011080.1 3532136 3532606 D 'composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism'; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3532136..3532606 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042635.1 CDS accC NC_011080.1 3532617 3533966 D 'an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism'; acetyl-CoA carboxylase biotin carboxylase subunit 3532617..3533966 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042636.1 CDS SNSL254_A3644 NC_011080.1 3534075 3534317 D identified by match to protein family HMM PF06196; hypothetical protein 3534075..3534317 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042637.1 CDS panF NC_011080.1 3534307 3535758 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3534307..3535758 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042638.1 CDS prmA NC_011080.1 3535770 3536651 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3535770..3536651 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042639.1 CDS SNSL254_A3647 NC_011080.1 3536855 3537013 D identified by glimmer; hypothetical protein 3536855..3537013 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042640.1 CDS dusB NC_011080.1 3537312 3538277 D identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; tRNA-dihydrouridine synthase B 3537312..3538277 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042641.1 CDS fis NC_011080.1 3538303 3538599 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3538303..3538599 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042642.1 CDS SNSL254_A3650 NC_011080.1 3538685 3539569 D identified by match to protein family HMM PF01555; methyltransferase 3538685..3539569 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042643.1 CDS SNSL254_A3651 NC_011080.1 3539652 3539816 D hypothetical protein 3539652..3539816 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042644.1 CDS SNSL254_A3652 NC_011080.1 3539967 3542066 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254; diguanylate cyclase 3539967..3542066 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042645.1 CDS SNSL254_A3653 NC_011080.1 3542069 3542731 R identified by match to protein family HMM PF00440; match to protein family HMM PF08361; DNA-binding transcriptional regulator EnvR complement(3542069..3542731) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042646.1 CDS SNSL254_A3654 NC_011080.1 3542804 3542962 D hypothetical protein 3542804..3542962 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042647.1 CDS SNSL254_A3655 NC_011080.1 3543145 3544302 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein E 3543145..3544302 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042648.1 CDS SNSL254_A3656 NC_011080.1 3544314 3547427 D identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; AcrB protein 3544314..3547427 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042649.1 CDS SNSL254_A3657 NC_011080.1 3547664 3547885 D lipoprotein 3547664..3547885 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042650.1 CDS SNSL254_A3658 NC_011080.1 3548325 3548459 R identified by glimmer; hypothetical protein complement(3548325..3548459) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042651.1 CDS SNSL254_A3667 NC_011080.1 3554338 3554454 D identified by glimmer; hypothetical protein 3554338..3554454 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042652.1 CDS SNSL254_A3669 NC_011080.1 3555029 3555286 R identified by match to protein family HMM PF07369; hypothetical protein complement(3555029..3555286) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042653.1 CDS aroE NC_011080.1 3555283 3556104 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(3555283..3556104) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042654.1 CDS SNSL254_A3671 NC_011080.1 3556106 3556678 R RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; ribosome maturation factor complement(3556106..3556678) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042655.1 CDS SNSL254_A3672 NC_011080.1 3556683 3557225 R identified by match to protein family HMM PF01396; topoisomerase DNA-binding C4 zinc finger domain-containing protein complement(3556683..3557225) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042656.1 CDS smg NC_011080.1 3557252 3557725 R identified by match to protein family HMM PF04361; hypothetical protein complement(3557252..3557725) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042657.1 CDS SNSL254_A3674 NC_011080.1 3557697 3558821 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA complement(3557697..3558821) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042658.1 CDS def NC_011080.1 3558953 3559462 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3558953..3559462 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042659.1 CDS fmt NC_011080.1 3559478 3560425 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3559478..3560425 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042660.1 CDS sun NC_011080.1 3560477 3561766 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase GidB 3560477..3561766 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042661.1 CDS trkA NC_011080.1 3561788 3563164 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3561788..3563164 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042662.1 CDS mscL NC_011080.1 3563306 3563719 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large conductance mechanosensitive channel protein 3563306..3563719 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042663.1 CDS zntR NC_011080.1 3563982 3564407 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator complement(3563982..3564407) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042664.1 CDS SNSL254_A3681 NC_011080.1 3564418 3564786 R identified by match to protein family HMM PF09350; hypothetical protein complement(3564418..3564786) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042665.1 CDS rplQ NC_011080.1 3564894 3565277 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3564894..3565277) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042666.1 CDS rpoA NC_011080.1 3565318 3566307 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3565318..3566307) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042667.1 CDS rpsD NC_011080.1 3566333 3566953 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(3566333..3566953) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042668.1 CDS rpsK NC_011080.1 3566987 3567376 R 'located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3'; 30S ribosomal protein S11 complement(3566987..3567376) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042669.1 CDS rpsM NC_011080.1 3567393 3567749 R 'located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA'; 30S ribosomal protein S13 complement(3567393..3567749) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042670.1 CDS secY NC_011080.1 3568044 3569375 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3568044..3569375) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042671.1 CDS rplO NC_011080.1 3569383 3569817 R late assembly protein; 50S ribosomal protein L15 complement(3569383..3569817) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042672.1 CDS rpmD NC_011080.1 3569821 3570000 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3569821..3570000) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042673.1 CDS rpsE NC_011080.1 3570004 3570507 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3570004..3570507) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042674.1 CDS rplR NC_011080.1 3570522 3570875 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3570522..3570875) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042675.1 CDS rplF NC_011080.1 3570885 3571418 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(3570885..3571418) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042676.1 CDS rpsH NC_011080.1 3571431 3571823 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3571431..3571823) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042677.1 CDS rpsN NC_011080.1 3571857 3572162 R 'located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif'; 30S ribosomal protein S14 complement(3571857..3572162) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042678.1 CDS rplE NC_011080.1 3572177 3572716 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3572177..3572716) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042679.1 CDS rplX NC_011080.1 3572731 3573045 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3572731..3573045) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042680.1 CDS rplN NC_011080.1 3573056 3573427 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3573056..3573427) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042681.1 CDS rpsQ NC_011080.1 3573591 3573845 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3573591..3573845) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042682.1 CDS rpmC NC_011080.1 3573845 3574036 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3573845..3574036) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042683.1 CDS rplP NC_011080.1 3574036 3574446 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3574036..3574446) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042684.1 CDS rpsC NC_011080.1 3574459 3575160 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3574459..3575160) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042685.1 CDS rplV NC_011080.1 3575178 3575510 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(3575178..3575510) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042686.1 CDS rpsS NC_011080.1 3575525 3575803 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3575525..3575803) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042687.1 CDS rplB NC_011080.1 3575820 3576641 R 'one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation'; 50S ribosomal protein L2 complement(3575820..3576641) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042688.1 CDS rplW NC_011080.1 3576659 3576961 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3576659..3576961) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042689.1 CDS rplD NC_011080.1 3576958 3577563 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3576958..3577563) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042690.1 CDS rplC NC_011080.1 3577574 3578203 R 'binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin'; 50S ribosomal protein L3 complement(3577574..3578203) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042691.1 CDS rpsJ NC_011080.1 3578236 3578547 R identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 complement(3578236..3578547) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042692.1 CDS SNSL254_A3711 NC_011080.1 3578927 3579394 D identified by match to protein family HMM PF01478; leader peptidase HopD 3578927..3579394 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042693.1 CDS bfr NC_011080.1 3579391 3579867 R iron storage protein; bacterioferritin complement(3579391..3579867) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042694.1 CDS bfd NC_011080.1 3579940 3580134 R identified by match to protein family HMM PF04324; bacterioferritin-associated ferredoxin complement(3579940..3580134) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042695.1 CDS tuf2 NC_011080.1 3580319 3581503 R 'EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu'; elongation factor Tu complement(3580319..3581503) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042696.1 CDS fusA NC_011080.1 3581575 3583689 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3581575..3583689) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042697.1 CDS rpsG NC_011080.1 3583786 3584256 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3583786..3584256) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042698.1 CDS rpsL NC_011080.1 3584352 3584726 R 'interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance'; 30S ribosomal protein S12 complement(3584352..3584726) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042699.1 CDS dsrH NC_011080.1 3584852 3585139 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB complement(3584852..3585139) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042700.1 CDS tusC NC_011080.1 3585147 3585503 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC complement(3585147..3585503) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042701.1 CDS tusD NC_011080.1 3585503 3585889 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(3585503..3585889) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042702.1 CDS SNSL254_A3722 NC_011080.1 3585889 3586611 R identified by match to protein family HMM PF08348; hypothetical protein complement(3585889..3586611) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042703.1 CDS SNSL254_A3723 NC_011080.1 3586888 3587706 R rotamase; FKBP-type peptidylprolyl isomerase complement(3586888..3587706) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042704.1 CDS SNSL254_A3724 NC_011080.1 3587926 3588144 D identified by match to protein family HMM PF04102; hypothetical protein 3587926..3588144 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042705.1 CDS slyD NC_011080.1 3588333 3588923 R rotamase; FKBP-type peptidylprolyl isomerase complement(3588333..3588923) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042706.1 CDS SNSL254_A3726 NC_011080.1 3589018 3589218 R identified by match to protein family HMM PF09526; match to protein family HMM TIGR02443; hypothetical protein complement(3589018..3589218) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042707.1 CDS kefB NC_011080.1 3589229 3591034 R involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB complement(3589229..3591034) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042708.1 CDS kefG NC_011080.1 3591034 3591585 R required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG complement(3591034..3591585) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042709.1 CDS SNSL254_A3729 NC_011080.1 3591851 3593758 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3591851..3593758 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042710.1 CDS SNSL254_A3730 NC_011080.1 3593921 3594142 D ABC transporter ATPase 3593921..3594142 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042711.1 CDS SNSL254_A3731 NC_011080.1 3594144 3594455 R identified by match to protein family HMM PF08803; hypothetical protein complement(3594144..3594455) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042712.1 CDS SNSL254_A3732 NC_011080.1 3594503 3594628 R identified by glimmer; hypothetical protein complement(3594503..3594628) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042713.1 CDS SNSL254_A3733 NC_011080.1 3594697 3595719 D identified by match to protein family HMM PF00561; hydrolase 3594697..3595719 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042714.1 CDS SNSL254_A3734 NC_011080.1 3595716 3595934 D identified by match to protein family HMM PF06794; hypothetical protein 3595716..3595934 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042715.1 CDS SNSL254_A3735 NC_011080.1 3595986 3596855 D identified by match to protein family HMM PF00485; phosphoribulokinase/uridine kinase family protein 3595986..3596855 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042716.1 CDS SNSL254_A3736 NC_011080.1 3596951 3597370 R identified by match to protein family HMM PF02566; hypothetical protein complement(3596951..3597370) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042717.1 CDS crp NC_011080.1 3597663 3598295 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3597663..3598295 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042718.1 CDS SNSL254_A3738 NC_011080.1 3598344 3600431 D identified by match to protein family HMM PF05976; match to protein family HMM TIGR01667; hypothetical protein 3598344..3600431 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042719.1 CDS argD NC_011080.1 3600474 3601691 R 'DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate'; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase complement(3600474..3601691) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042720.1 CDS pabA NC_011080.1 3601777 3602340 R aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II complement(3601777..3602340) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042721.1 CDS fic NC_011080.1 3602372 3602974 R identified by match to protein family HMM PF02661; cell filamentation protein Fic complement(3602372..3602974) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042722.1 CDS ppiA NC_011080.1 3603240 3603812 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase A complement(3603240..3603812) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042723.1 CDS tsgA NC_011080.1 3604089 3605270 D identified by match to protein family HMM PF07690; hypothetical protein 3604089..3605270 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042725.1 CDS nirB NC_011080.1 3605532 3608075 D identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H], large subunit 3605532..3608075 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042726.1 CDS nirD NC_011080.1 3608072 3608398 D 'involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations'; nitrite reductase small subunit 3608072..3608398 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042727.1 CDS SNSL254_A3747 NC_011080.1 3608395 3608553 R hypothetical protein complement(3608395..3608553) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042728.1 CDS nirC NC_011080.1 3608663 3609472 D member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3608663..3609472 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042729.1 CDS cysG NC_011080.1 3609484 3610857 D 'multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin'; siroheme synthase 3609484..3610857 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042730.1 CDS SNSL254_A3752 NC_011080.1 3617213 3617383 D outer membrane lipoprotein 3617213..3617383 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042731.1 CDS trpS NC_011080.1 3617528 3618532 R 'catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; tryptophanyl-tRNA synthetase complement(3617528..3618532) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042732.1 CDS gph NC_011080.1 3618525 3619283 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(3618525..3619283) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042733.1 CDS rpe NC_011080.1 3619276 3619953 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(3619276..3619953) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042734.1 CDS dam NC_011080.1 3619971 3620807 R identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; DNA adenine methylase complement(3619971..3620807) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042735.1 CDS SNSL254_A3757 NC_011080.1 3620988 3622265 R identified by match to protein family HMM PF05036; hypothetical protein complement(3620988..3622265) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042736.1 CDS aroB NC_011080.1 3622363 3623451 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(3622363..3623451) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042737.1 CDS aroK NC_011080.1 3623508 3624029 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(3623508..3624029) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042738.1 CDS hofQ NC_011080.1 3624494 3625774 R outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; outer membrane porin HofQ complement(3624494..3625774) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042739.1 CDS SNSL254_A3761 NC_011080.1 3625647 3626048 R hypothetical protein complement(3625647..3626048) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042740.1 CDS SNSL254_A3762 NC_011080.1 3626038 3626511 R hypothetical protein complement(3626038..3626511) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042741.1 CDS SNSL254_A3763 NC_011080.1 3626495 3627034 R identified by match to protein family HMM PF05137; PilN family protein complement(3626495..3627034) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042742.1 CDS SNSL254_A3764 NC_011080.1 3627034 3627813 R HofM protein complement(3627034..3627813) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042743.1 CDS mrcA NC_011080.1 3627934 3630486 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3627934..3630486 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042744.1 CDS nudE NC_011080.1 3630582 3631178 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(3630582..3631178) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042745.1 CDS SNSL254_A3767 NC_011080.1 3631468 3633600 D identified by match to protein family HMM PF07095; intracellular growth attenuator protein IgaA 3631468..3633600 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042746.1 CDS SNSL254_A3768 NC_011080.1 3633665 3634333 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD hydrolase, IA family 3633665..3634333 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042747.1 CDS hslR NC_011080.1 3634344 3634745 D identified by match to protein family HMM PF01479; ribosome-associated heat shock protein Hsp15 3634344..3634745 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042748.1 CDS hslO NC_011080.1 3634764 3635648 D 'becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers'; Hsp33-like chaperonin 3634764..3635648 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042749.1 CDS SNSL254_A3771 NC_011080.1 3635759 3637468 R hypothetical protein complement(3635759..3637468) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042750.1 CDS SNSL254_A3772 NC_011080.1 3637660 3637794 R identified by glimmer; hypothetical protein complement(3637660..3637794) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042751.1 CDS pckA NC_011080.1 3637848 3639467 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3637848..3639467 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042752.1 CDS envZ NC_011080.1 3639542 3640885 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(3639542..3640885) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042753.1 CDS ompR NC_011080.1 3640891 3641610 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(3640891..3641610) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042754.1 CDS greB NC_011080.1 3641836 3642309 D 'necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus'; transcription elongation factor GreB 3641836..3642309 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042755.1 CDS SNSL254_A3777 NC_011080.1 3642408 3644738 D identified by match to protein family HMM PF00575; match to protein family HMM PF09371; transcriptional accessory protein 3642408..3644738 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042756.1 CDS feoA NC_011080.1 3645175 3645402 D identified by match to protein family HMM PF04023; ferrous iron transport protein A 3645175..3645402 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042757.1 CDS feoB NC_011080.1 3645421 3647739 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3645421..3647739 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042758.1 CDS SNSL254_A3780 NC_011080.1 3647752 3647988 D identified by match to protein family HMM PF09012; hypothetical protein 3647752..3647988 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042760.1 CDS SNSL254_A3782 NC_011080.1 3648223 3649137 D identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 3648223..3649137 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042761.1 CDS SNSL254_A3783 NC_011080.1 3649173 3649943 R Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH complement(3649173..3649943) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042762.1 CDS SNSL254_A3784 NC_011080.1 3649981 3650664 D involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3649981..3650664 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042763.1 CDS gntY NC_011080.1 3650723 3651298 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 3650723..3651298 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042764.1 CDS gntT NC_011080.1 3651675 3652991 D identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; high-affinity gluconate transporter 3651675..3652991 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042765.1 CDS malQ NC_011080.1 3653110 3655188 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(3653110..3655188) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042766.1 CDS SNSL254_A3788 NC_011080.1 3655198 3657591 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; maltodextrin phosphorylase complement(3655198..3657591) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042767.1 CDS malT NC_011080.1 3658186 3660891 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3658186..3660891 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042768.1 CDS SNSL254_A3790 NC_011080.1 3660960 3661718 R 'represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism'; DNA-binding transcriptional repressor GlpR complement(3660960..3661718) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042769.1 CDS SNSL254_A3791 NC_011080.1 3661812 3662636 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG complement(3661812..3662636) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042770.1 CDS glpE NC_011080.1 3662718 3663044 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase complement(3662718..3663044) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042771.1 CDS glpD NC_011080.1 3663243 3664751 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3663243..3664751 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042772.1 CDS SNSL254_A3794 NC_011080.1 3664798 3665343 R hypothetical protein complement(3664798..3665343) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042773.1 CDS SNSL254_A3795 NC_011080.1 3665353 3666813 R phosphate-binding protein complement(3665353..3666813) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042774.1 CDS gldA NC_011080.1 3667007 3668116 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(3667007..3668116) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042775.1 CDS SNSL254_A3797 NC_011080.1 3668454 3669788 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 3668454..3669788 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042776.1 CDS SNSL254_A3798 NC_011080.1 3669785 3671500 D identified by match to protein family HMM PF00920; dihydroxy-acid dehydratase 3669785..3671500 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042777.1 CDS SNSL254_A3799 NC_011080.1 3671544 3672449 D identified by match to protein family HMM PF00701; dihydrodipicolinate synthetase 3671544..3672449 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042778.1 CDS SNSL254_A3800 NC_011080.1 3672493 3673248 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator complement(3672493..3673248) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042779.1 CDS SNSL254_A3801 NC_011080.1 3673426 3675873 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase complement(3673426..3675873) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042780.1 CDS glgA NC_011080.1 3675893 3677326 R 'catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose'; glycogen synthase complement(3675893..3677326) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042781.1 CDS glgC NC_011080.1 3677326 3678621 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3677326..3678621) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042782.1 CDS glgX NC_011080.1 3678636 3680612 R 'catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen'; glycogen debranching protein complement(3678636..3680612) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042783.1 CDS glgB NC_011080.1 3680609 3682795 R 'catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain'; glycogen branching protein complement(3680609..3682795) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042784.1 CDS asd NC_011080.1 3683142 3684248 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(3683142..3684248) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042785.1 CDS gntU NC_011080.1 3684671 3686011 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; low affinity gluconate transporter complement(3684671..3686011) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042786.1 CDS gntK NC_011080.1 3686008 3686502 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase complement(3686008..3686502) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042787.2 CDS gntR NC_011080.1 3686680 3687675 R identified by match to protein family HMM PF00532; transcriptional regulator GntR complement(3686680..3687675) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042788.1 CDS SNSL254_A3811 NC_011080.1 3687805 3688500 R identified by match to protein family HMM PF02678; match to protein family HMM PF07883; hypothetical protein complement(3687805..3688500) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042789.1 CDS SNSL254_A3812 NC_011080.1 3688624 3689661 R identified by match to protein family HMM PF01408; match to protein family HMM PF02894; dehydrogenase complement(3688624..3689661) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042790.1 CDS SNSL254_A3814 NC_011080.1 3690129 3690617 D YhhY; regulated by the fur regulator; unknown function; acetyltransferase YhhY 3690129..3690617 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042791.1 CDS SNSL254_A3815 NC_011080.1 3690698 3690814 R identified by glimmer; hypothetical protein complement(3690698..3690814) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042792.1 CDS SNSL254_A3816 NC_011080.1 3690882 3692096 D identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; ribokinase 3690882..3692096 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042793.1 CDS SNSL254_A3817 NC_011080.1 3692112 3692873 D identified by match to protein family HMM PF07090; hypothetical protein 3692112..3692873 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042794.1 CDS SNSL254_A3818 NC_011080.1 3692927 3693898 D hypothetical protein 3692927..3693898 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042795.1 CDS SNSL254_A3819 NC_011080.1 3693895 3694929 D identified by match to protein family HMM PF02126; phophotriesterase 3693895..3694929 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042796.1 CDS ggt NC_011080.1 3694974 3696716 R periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase complement(3694974..3696716) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042797.1 CDS SNSL254_A3821 NC_011080.1 3696842 3697258 D hypothetical protein 3696842..3697258 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042798.1 CDS ugpQ NC_011080.1 3697271 3698011 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase complement(3697271..3698011) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042799.1 CDS ugpC NC_011080.1 3698008 3699078 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(3698008..3699078) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042800.1 CDS SNSL254_A3824 NC_011080.1 3699081 3699926 R with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein complement(3699081..3699926) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042801.1 CDS ugpA NC_011080.1 3699923 3700810 R with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease complement(3699923..3700810) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042802.1 CDS SNSL254_A3826 NC_011080.1 3700915 3702231 R with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein complement(3700915..3702231) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042803.1 CDS SNSL254_A3827 NC_011080.1 3702490 3702858 R identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; death on curing protein complement(3702490..3702858) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042804.1 CDS SNSL254_A3828 NC_011080.1 3702855 3703076 R identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; addiction module antitoxin complement(3702855..3703076) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042805.1 CDS livF NC_011080.1 3703208 3703921 R 'with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter ATP-binding subunit complement(3703208..3703921) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042806.1 CDS livG NC_011080.1 3703923 3704690 R 'Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter ATP-binding subunit complement(3703923..3704690) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042807.1 CDS livM NC_011080.1 3704687 3705964 R 'Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter permease subunit complement(3704687..3705964) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042808.1 CDS livH NC_011080.1 3705961 3706887 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease LivH complement(3705961..3706887) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042809.1 CDS livK NC_011080.1 3706947 3708056 R identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK complement(3706947..3708056) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042810.1 CDS SNSL254_A3834 NC_011080.1 3708478 3708861 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 3708478..3708861 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042811.1 CDS SNSL254_A3835 NC_011080.1 3708839 3708973 D hypothetical protein 3708839..3708973 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042812.1 CDS SNSL254_A3836 NC_011080.1 3709057 3710154 R identified by match to protein family HMM PF01094; leucine-specific-binding protein complement(3709057..3710154) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042813.1 CDS rpoH NC_011080.1 3710482 3711336 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(3710482..3711336) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042814.1 CDS ftsX NC_011080.1 3711582 3712637 R 'ABC transporter, membrane protein'; cell division protein FtsX complement(3711582..3712637) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042815.1 CDS ftsE NC_011080.1 3712630 3713298 R 'ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions'; cell division protein FtsE complement(3712630..3713298) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042816.1 CDS SNSL254_A3840 NC_011080.1 3713301 3714776 R signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY complement(3713301..3714776) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042817.1 CDS rsmD NC_011080.1 3714875 3715498 D catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3714875..3715498 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042818.1 CDS SNSL254_A3842 NC_011080.1 3715488 3715757 D identified by match to protein family HMM PF06611; hypothetical protein 3715488..3715757 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042819.1 CDS SNSL254_A3843 NC_011080.1 3715779 3716150 R hypothetical protein complement(3715779..3716150) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042820.1 CDS SNSL254_A3844 NC_011080.1 3716292 3716918 D identified by match to protein family HMM PF07947; hypothetical protein 3716292..3716918 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042821.1 CDS zntA NC_011080.1 3716999 3719197 D 'P-type ATPase involved in the export of lead, cadmium, zinc and mercury'; zinc/cadmium/mercury/lead-transporting ATPase 3716999..3719197 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042822.1 CDS SNSL254_A3846 NC_011080.1 3719397 3721040 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 3719397..3721040 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042823.1 CDS SNSL254_A3847 NC_011080.1 3721064 3721399 R identified by match to protein family HMM PF01206; hypothetical protein complement(3721064..3721399) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042824.1 CDS SNSL254_A3848 NC_011080.1 3721479 3722144 D identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 3721479..3722144 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042825.1 CDS SNSL254_A3849 NC_011080.1 3722217 3722774 D hypothetical protein 3722217..3722774 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042826.1 CDS SNSL254_A3850 NC_011080.1 3722778 3723995 R identified by match to protein family HMM PF07690; major facilitator superfamily transporter complement(3722778..3723995) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042827.1 CDS SNSL254_A3851 NC_011080.1 3724127 3725176 D identified by match to protein family HMM PF01594; hypothetical protein 3724127..3725176 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042828.1 CDS SNSL254_A3852 NC_011080.1 3725228 3725806 D identified by match to protein family HMM PF01648; holo-(acyl carrier protein) synthase 2 3725228..3725806 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042829.1 CDS nikR NC_011080.1 3725862 3726299 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3725862..3726299 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042830.1 CDS SNSL254_A3854 NC_011080.1 3726389 3727513 R identified by match to protein family HMM PF01061; ABC transporter ATP-binding protein complement(3726389..3727513) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042831.1 CDS SNSL254_A3855 NC_011080.1 3727513 3730254 R identified by match to protein family HMM PF00005; match to protein family HMM PF01061; ABC transporter permease/ATP-binding protein complement(3727513..3730254) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042832.1 CDS SNSL254_A3856 NC_011080.1 3730251 3731318 R identified by match to protein family HMM PF00529; auxiliary transport protein membrane fusion protein (MFP) family complement(3730251..3731318) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042833.1 CDS SNSL254_A3857 NC_011080.1 3731410 3731541 D identified by glimmer; hypothetical protein 3731410..3731541 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042834.1 CDS SNSL254_A3858 NC_011080.1 3731624 3732820 R identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein complement(3731624..3732820) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042835.1 CDS SNSL254_A3859 NC_011080.1 3733051 3734547 D identified by match to protein family HMM PF01384; low-affinity inorganic phosphate transporter 2 3733051..3734547 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042836.1 CDS SNSL254_A3860 NC_011080.1 3734688 3734969 R 'ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress'; universal stress protein UspB complement(3734688..3734969) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042837.1 CDS uspA NC_011080.1 3735411 3735845 D identified by match to protein family HMM PF00582; universal stress protein A 3735411..3735845 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042838.1 CDS SNSL254_A3862 NC_011080.1 3736170 3737642 D member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3736170..3737642 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042839.1 CDS SNSL254_A3863 NC_011080.1 3737734 3738492 R predicted SAM-dependent methyltransferase; methyltransferase complement(3737734..3738492) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042840.1 CDS SNSL254_A3864 NC_011080.1 3738499 3740541 R identified by match to protein family HMM PF01432; oligopeptidase A complement(3738499..3740541) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042841.1 CDS SNSL254_A3865 NC_011080.1 3740704 3741357 R hypothetical protein complement(3740704..3741357) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042842.1 CDS SNSL254_A3866 NC_011080.1 3741635 3742078 D hypothetical protein 3741635..3742078 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042843.1 CDS yhiR NC_011080.1 3742199 3743041 D identified by match to protein family HMM PF04378; DNA utilization protein YhiR 3742199..3743041 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042844.1 CDS SNSL254_A3868 NC_011080.1 3743002 3743133 R identified by glimmer; hypothetical protein complement(3743002..3743133) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042845.1 CDS gor NC_011080.1 3743146 3744498 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3743146..3744498 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042846.1 CDS SNSL254_A3870 NC_011080.1 3744545 3745588 R identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase complement(3744545..3745588) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042847.1 CDS SNSL254_A3871 NC_011080.1 3745647 3746966 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(3745647..3746966) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042848.1 CDS SNSL254_A3872 NC_011080.1 3747020 3747865 R identified by match to protein family HMM PF00294; PfkB domain-containing protein complement(3747020..3747865) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042849.1 CDS SNSL254_A3873 NC_011080.1 3747929 3748903 R identified by match to protein family HMM PF01380; sugar isomerase complement(3747929..3748903) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042850.1 CDS SNSL254_A3874 NC_011080.1 3749082 3749801 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(3749082..3749801) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042851.1 CDS treF NC_011080.1 3750128 3751777 D cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3750128..3751777 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042852.1 CDS SNSL254_A3876 NC_011080.1 3751790 3753379 R hypothetical protein complement(3751790..3753379) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042853.1 CDS SNSL254_A3877 NC_011080.1 3753660 3754016 D phage endolysin 3753660..3754016 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042854.1 CDS SNSL254_A3878 NC_011080.1 3754022 3754624 R identified by match to protein family HMM PF00196; match to protein family HMM PF01726; match to protein family HMM PF08281; transcriptional regulator complement(3754022..3754624) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042855.1 CDS SNSL254_A3879 NC_011080.1 3755251 3756153 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 3755251..3756153 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042856.1 CDS SNSL254_A3880 NC_011080.1 3756226 3757254 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00766; ribonuclease 3756226..3757254 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042857.1 CDS SNSL254_A3881 NC_011080.1 3757605 3758927 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; MFS transporter, metabolite:H+ symporter (MHS) family protein 3757605..3758927 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042858.1 CDS SNSL254_A3882 NC_011080.1 3758967 3761027 R identified by match to protein family HMM PF05170; AsmA family protein complement(3758967..3761027) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042859.1 CDS SNSL254_A3883 NC_011080.1 3761137 3761904 R in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein complement(3761137..3761904) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083653.1 CDS SNSL254_A3884 NC_011080.1 3762133 3763062 D 2-dehydro-3-deoxygluconokinase 3762133..3763062 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042860.1 CDS SNSL254_A3885 NC_011080.1 3763116 3764603 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; hypothetical protein complement(3763116..3764603) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042861.1 CDS dctA NC_011080.1 3764823 3766109 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(3764823..3766109) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042862.1 CDS SNSL254_A3887 NC_011080.1 3766267 3768273 R HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli; phosphodiesterase complement(3766267..3768273) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042863.1 CDS SNSL254_A3888 NC_011080.1 3768447 3771989 R 'cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA'; cellulose synthase subunit BcsC complement(3768447..3771989) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042864.1 CDS bcsZ NC_011080.1 3771971 3773080 R 'catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans'; endo-1,4-D-glucanase complement(3771971..3773080) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042865.1 CDS bcsB NC_011080.1 3773084 3775363 R 'binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)'; cellulose synthase regulator protein complement(3773084..3775363) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042866.1 CDS bcsA NC_011080.1 3775395 3778019 R 'polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis'; cellulose synthase catalytic subunit complement(3775395..3778019) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042867.1 CDS yhjQ NC_011080.1 3778016 3778768 R identified by match to protein family HMM PF06564; match to protein family HMM TIGR03371; cell division protein complement(3778016..3778768) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042868.1 CDS SNSL254_A3893 NC_011080.1 3778769 3778972 R hypothetical protein complement(3778769..3778972) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042870.2 CDS SNSL254_A3895 NC_011080.1 3779217 3780788 D identified by match to protein family HMM TIGR03369; cellulose biosynthesis protein BcsE 3779217..3780788 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042871.1 CDS bcsF NC_011080.1 3780785 3780976 D identified by match to protein family HMM TIGR03493; cellulose biosynthesis operon protein BcsF/YhjT 3780785..3780976 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042872.1 CDS yhjU NC_011080.1 3780973 3782652 D identified by match to protein family HMM TIGR03368; cellulose synthase operon protein YhjU 3780973..3782652 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042874.1 CDS SNSL254_A3901 NC_011080.1 3783484 3784782 D inner membrane transport protein YhaO 3783484..3784782 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042875.1 CDS dppF NC_011080.1 3784883 3785896 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(3784883..3785896) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042876.1 CDS dppD NC_011080.1 3785893 3786876 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit complement(3785893..3786876) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042877.1 CDS dppC NC_011080.1 3786887 3787789 R identified by match to protein family HMM PF00528; dipeptide transporter complement(3786887..3787789) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042878.1 CDS dppB NC_011080.1 3787799 3788818 R transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB complement(3787799..3788818) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042879.1 CDS dppA NC_011080.1 3788975 3790555 R identified by match to protein family HMM PF00496; dipeptide ABC transporter substrate-binding protein complement(3788975..3790555) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042880.1 CDS SNSL254_A3907 NC_011080.1 3791138 3792463 R identified by match to protein family HMM PF00860; xanthine/uracil/vitamin C permease complement(3791138..3792463) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042881.1 CDS SNSL254_A3908 NC_011080.1 3792521 3793645 R PQQ enzyme repeat complement(3792521..3793645) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042882.1 CDS SNSL254_A3909 NC_011080.1 3793698 3793811 D identified by glimmer; hypothetical protein 3793698..3793811 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042883.1 CDS SNSL254_A3910 NC_011080.1 3793795 3794802 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI:Periplasmic binding protein/LacI transcriptional regulator 3793795..3794802 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042884.1 CDS SNSL254_A3913 NC_011080.1 3795283 3796974 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase complement(3795283..3796974) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042885.1 CDS SNSL254_A3914 NC_011080.1 3797192 3797719 R identified by match to protein family HMM PF00419; hypothetical protein complement(3797192..3797719) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_003495232.1 CDS SNSL254_A3915 NC_011080.1 3797725 3798804 R long polar fimbrial protein complement(3797725..3798804) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042886.1 CDS SNSL254_A3916 NC_011080.1 3798822 3801350 R identified by match to protein family HMM PF00577; fimbrial usher protein complement(3798822..3801350) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042887.1 CDS SNSL254_A3917 NC_011080.1 3801373 3802071 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pili assembly chaperone, N- domain complement(3801373..3802071) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042888.1 CDS SNSL254_A3918 NC_011080.1 3802156 3802680 R identified by match to protein family HMM PF00419; long polar fimbria protein A complement(3802156..3802680) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042889.1 CDS SNSL254_A3919 NC_011080.1 3803035 3803196 D identified by glimmer; hypothetical protein 3803035..3803196 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042890.1 CDS SNSL254_A3920 NC_011080.1 3803198 3803902 R lipase complement(3803198..3803902) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042891.1 CDS SNSL254_A3921 NC_011080.1 3804059 3804640 D 'constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine'; 3-methyladenine DNA glycosylase 3804059..3804640 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042892.1 CDS SNSL254_A3922 NC_011080.1 3804618 3805058 D identified by match to protein family HMM PF00583; hypothetical protein 3804618..3805058 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042893.1 CDS SNSL254_A3923 NC_011080.1 3805027 3807360 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; biotin sulfoxide reductase complement(3805027..3807360) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042894.1 CDS SNSL254_A3924 NC_011080.1 3807513 3808175 D identified by match to protein family HMM PF00691; match to protein family HMM PF05433; outer membrane lipoprotein 3807513..3808175 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042895.1 CDS SNSL254_A3925 NC_011080.1 3808394 3809368 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; 2-ketogluconate reductase 3808394..3809368 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042896.1 CDS SNSL254_A3926 NC_011080.1 3809418 3810128 R hypothetical protein complement(3809418..3810128) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042897.1 CDS SNSL254_A3927 NC_011080.1 3810278 3810409 R identified by glimmer; hypothetical protein complement(3810278..3810409) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042898.1 CDS SNSL254_A3928 NC_011080.1 3810567 3810857 D transcriptional regulator 3810567..3810857 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042899.1 CDS SNSL254_A3929 NC_011080.1 3811145 3811357 D identified by match to protein family HMM PF00313; major cold shock protein 3811145..3811357 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042900.1 CDS SNSL254_A3930 NC_011080.1 3811531 3812070 D hypothetical protein 3811531..3812070 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042901.1 CDS glyS NC_011080.1 3812121 3814190 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(3812121..3814190) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042902.1 CDS glyQ NC_011080.1 3814200 3815111 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(3814200..3815111) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042903.2 CDS SNSL254_A3934 NC_011080.1 3815250 3815552 R hypothetical protein complement(3815250..3815552) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042905.1 CDS SNSL254_A3935 NC_011080.1 3815718 3816713 D identified by match to protein family HMM PF01757; acyltransferase 3815718..3816713 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042906.1 CDS SNSL254_A3936 NC_011080.1 3816736 3817089 R identified by match to protein family HMM PF05360; hypothetical protein complement(3816736..3817089) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042907.1 CDS SNSL254_A3937 NC_011080.1 3817120 3817257 R identified by glimmer; hypothetical protein complement(3817120..3817257) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042908.1 CDS xylB NC_011080.1 3817264 3818718 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312; xylulokinase complement(3817264..3818718) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042909.1 CDS xylA NC_011080.1 3818818 3820140 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(3818818..3820140) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042910.1 CDS SNSL254_A3940 NC_011080.1 3820503 3821681 D identified by match to protein family HMM PF00165; xylose operon regulatory protein 3820503..3821681 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042911.1 CDS bax NC_011080.1 3821742 3822665 R identified by match to protein family HMM PF01832; hypothetical protein complement(3821742..3822665) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042912.1 CDS malS NC_011080.1 3822881 3824908 D 'periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds'; periplasmic alpha-amylase 3822881..3824908 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042913.1 CDS avtA NC_011080.1 3825082 3826332 D 'transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis'; valine--pyruvate transaminase 3825082..3826332 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042914.1 CDS SNSL254_A3944 NC_011080.1 3826369 3826842 R identified by match to protein family HMM PF00037; oxidoreductase AegA complement(3826369..3826842) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042915.1 CDS SNSL254_A3945 NC_011080.1 3826959 3827759 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; HTH-type transcriptional regulator YiaJ complement(3826959..3827759) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042916.1 CDS SNSL254_A3946 NC_011080.1 3827989 3828987 D 'NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate'; 2,3-diketo-L-gulonate reductase 3827989..3828987 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042917.1 CDS SNSL254_A3947 NC_011080.1 3828999 3829463 D identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 3828999..3829463 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042918.1 CDS SNSL254_A3948 NC_011080.1 3829487 3830419 D hypothetical protein 3829487..3830419 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042919.1 CDS SNSL254_A3949 NC_011080.1 3830558 3831031 D 'membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO'; 2,3-diketo-L-gulonate TRAP transporter small permease 3830558..3831031 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042920.1 CDS SNSL254_A3950 NC_011080.1 3831034 3832311 D identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; 2,3-diketo-l-gulonate trap transporter large permease protein yian 3831034..3832311 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042921.1 CDS SNSL254_A3951 NC_011080.1 3832323 3833309 D identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter subunit DctP 3832323..3833309 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042922.1 CDS SNSL254_A3952 NC_011080.1 3833313 3834809 D identified by match to protein family HMM PF00370; match to protein family HMM PF02782; L-xylulose/3-keto-L-gulonate kinase 3833313..3834809 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042923.1 CDS sgbH NC_011080.1 3834806 3835468 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3834806..3835468 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042924.1 CDS SNSL254_A3954 NC_011080.1 3835461 3836321 D 'L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate'; L-xylulose 5-phosphate 3-epimerase 3835461..3836321 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042925.1 CDS sgbE NC_011080.1 3836315 3837010 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3836315..3837010 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042926.1 CDS SNSL254_A3956 NC_011080.1 3837171 3837986 R identified by match to protein family HMM PF00165; regulatory protein complement(3837171..3837986) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042927.1 CDS SNSL254_A3957 NC_011080.1 3838250 3840205 D identified by match to protein family HMM PF07944; hypothetical protein 3838250..3840205 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042928.1 CDS aldB NC_011080.1 3840491 3842029 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(3840491..3842029) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042929.1 CDS SNSL254_A3959 NC_011080.1 3842198 3843079 D identified by match to protein family HMM PF00480; transcriptional regulator 3842198..3843079 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042930.1 CDS selB NC_011080.1 3843327 3845177 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00475; selenocysteinyl-tRNA-specific translation factor complement(3843327..3845177) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042931.1 CDS selA NC_011080.1 3845174 3846565 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(3845174..3846565) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042932.1 CDS SNSL254_A3962 NC_011080.1 3846664 3847272 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase complement(3846664..3847272) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042933.1 CDS SNSL254_A3963 NC_011080.1 3847748 3849664 D identified by match to protein family HMM PF00359; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system mannitol-specific transporter subunit IICBA 3847748..3849664 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042934.1 CDS mtlD NC_011080.1 3849885 3851033 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; mannitol-1-phosphate 5-dehydrogenase 3849885..3851033 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042935.1 CDS mtlR NC_011080.1 3851030 3851620 D Acts as a repressor of the mtlAD operon; mannitol repressor protein 3851030..3851620 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042936.1 CDS SNSL254_A3966 NC_011080.1 3851630 3851839 R hypothetical protein complement(3851630..3851839) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042937.1 CDS SNSL254_A3967 NC_011080.1 3852129 3852491 D hypothetical protein 3852129..3852491 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042938.1 CDS SNSL254_A3968 NC_011080.1 3852572 3852733 D identified by glimmer; hypothetical protein 3852572..3852733 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042939.1 CDS SNSL254_A3969 NC_011080.1 3852979 3853662 D hypothetical protein 3852979..3853662 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042940.1 CDS SNSL254_A3970 NC_011080.1 3853706 3858049 D identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; autotransporter 3853706..3858049 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042941.1 CDS lldP NC_011080.1 3858348 3860003 D identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 3858348..3860003 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042942.1 CDS SNSL254_A3972 NC_011080.1 3860000 3860776 D represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3860000..3860776 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042943.1 CDS lldD NC_011080.1 3860773 3861963 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3860773..3861963 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042944.1 CDS SNSL254_A3974 NC_011080.1 3862028 3862501 D member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA/rRNA methyltransferase YibK 3862028..3862501 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042945.1 CDS SNSL254_A3976 NC_011080.1 3862569 3863624 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator complement(3862569..3863624) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042946.1 CDS SNSL254_A3975 NC_011080.1 3863623 3863901 D identified by glimmer; hypothetical protein 3863623..3863901 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042947.1 CDS SNSL254_A3977 NC_011080.1 3863892 3865088 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein 3863892..3865088 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042948.1 CDS SNSL254_A3978 NC_011080.1 3865162 3866472 D identified by match to protein family HMM PF07690; glucarate transporter 3865162..3866472 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042949.1 CDS cysE NC_011080.1 3866555 3867376 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(3866555..3867376) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042950.1 CDS gpsA NC_011080.1 3867454 3868473 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3867454..3868473) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042951.1 CDS secB NC_011080.1 3868473 3868940 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(3868473..3868940) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042952.1 CDS grxC NC_011080.1 3868984 3869235 R identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 complement(3868984..3869235) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042953.1 CDS SNSL254_A3983 NC_011080.1 3869322 3869753 R identified by match to protein family HMM PF00581; rhodanese domain-containing protein complement(3869322..3869753) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042954.1 CDS gpmI NC_011080.1 3870001 3871545 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3870001..3871545 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042955.1 CDS SNSL254_A3985 NC_011080.1 3871555 3872838 D identified by match to protein family HMM PF01551; hypothetical protein 3871555..3872838 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042956.1 CDS SNSL254_A3986 NC_011080.1 3872842 3873804 D identified by match to protein family HMM PF04748; divergent polysaccharide deacetylase 3872842..3873804 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042957.1 CDS SNSL254_A3987 NC_011080.1 3873791 3874825 R identified by match to protein family HMM PF00535; glycosyl transferase complement(3873791..3874825) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042958.1 CDS tdh NC_011080.1 3875320 3876345 R 'converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism'; L-threonine 3-dehydrogenase complement(3875320..3876345) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042959.1 CDS kbl NC_011080.1 3876355 3877551 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase complement(3876355..3877551) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042960.1 CDS rfaD NC_011080.1 3877754 3878686 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3877754..3878686 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042961.1 CDS rfaF NC_011080.1 3878689 3879735 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3878689..3879735 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042962.1 CDS rfaC NC_011080.1 3879735 3880688 D identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193; ADP-heptose--LPS heptosyltransferase 3879735..3880688 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042963.1 CDS SNSL254_A3993 NC_011080.1 3880728 3881942 D identified by match to protein family HMM PF04932; O-antigen ligase 3880728..3881942 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042964.1 CDS SNSL254_A3994 NC_011080.1 3881999 3883144 R identified by match to protein family HMM PF00534; lipopolysaccharide 1,2-N-acetylglucosaminetransferase complement(3881999..3883144) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042965.1 CDS SNSL254_A3995 NC_011080.1 3883244 3884053 R lipopolysaccharide core biosynthesis protein complement(3883244..3884053) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042966.1 CDS SNSL254_A3996 NC_011080.1 3884203 3884901 R identified by match to protein family HMM PF06176; lipopolysaccharide core biosynthesis protein complement(3884203..3884901) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042967.1 CDS SNSL254_A3997 NC_011080.1 3884924 3885934 R identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,2-glucosyltransferase complement(3884924..3885934) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042968.1 CDS SNSL254_A3998 NC_011080.1 3885952 3886965 R identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,3-galactosyltransferase complement(3885952..3886965) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042969.1 CDS SNSL254_A3999 NC_011080.1 3886971 3888050 R identified by match to protein family HMM PF00534; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(3886971..3888050) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042970.1 CDS SNSL254_A4000 NC_011080.1 3888064 3889044 R identified by match to protein family HMM PF01501; hypothetical protein complement(3888064..3889044) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042971.1 CDS SNSL254_A4001 NC_011080.1 3889100 3889897 R identified by match to protein family HMM PF06293; lipopolysaccharide core biosynthesis protein complement(3889100..3889897) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042972.1 CDS SNSL254_A4002 NC_011080.1 3889890 3891014 R identified by match to protein family HMM PF00534; lipopolysaccharide core biosynthesis protein RfaG complement(3889890..3891014) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042973.1 CDS SNSL254_A4003 NC_011080.1 3891011 3892081 R identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201; lipopolysaccharide core biosynthesis protein complement(3891011..3892081) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042974.1 CDS waaA NC_011080.1 3892489 3893766 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3892489..3893766 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042975.1 CDS coaD NC_011080.1 3893775 3894254 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3893775..3894254 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042976.1 CDS mutM NC_011080.1 3894282 3895091 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3894282..3895091) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042977.1 CDS rpmG NC_011080.1 3895189 3895356 R 'in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif'; 50S ribosomal protein L33 complement(3895189..3895356) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042978.1 CDS rpmB NC_011080.1 3895377 3895613 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(3895377..3895613) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042979.1 CDS radC NC_011080.1 3895831 3896496 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(3895831..3896496) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083654.1 CDS coaBC NC_011080.1 3896669 3897892 D bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3896669..3897892 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042980.1 CDS dut NC_011080.1 3897870 3898328 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3897870..3898328 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042981.1 CDS slmA NC_011080.1 3898436 3899032 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3898436..3899032 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042982.1 CDS pyrE NC_011080.1 3899110 3899751 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(3899110..3899751) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042983.1 CDS rph NC_011080.1 3899829 3900545 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(3899829..3900545) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042984.1 CDS SNSL254_A4015 NC_011080.1 3900671 3901534 D identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 3900671..3901534 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042985.1 CDS SNSL254_A4016 NC_011080.1 3901584 3902486 R identified by match to protein family HMM PF00126; LysR family transcriptional regulator complement(3901584..3902486) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042986.1 CDS SNSL254_A4017 NC_011080.1 3902560 3903441 D identified by match to protein family HMM PF00753; beta-lactamase 3902560..3903441 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042987.1 CDS SNSL254_A4018 NC_011080.1 3903692 3904309 D identified by match to protein family HMM PF03458; hypothetical protein 3903692..3904309 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042988.1 CDS ligB NC_011080.1 3904306 3905991 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB complement(3904306..3905991) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042989.1 CDS gmk NC_011080.1 3906248 3906871 D 'Essential for recycling GMP and indirectly, cGMP'; guanylate kinase 3906248..3906871 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042990.1 CDS rpoZ NC_011080.1 3906926 3907201 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3906926..3907201 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042991.1 CDS SNSL254_A4022 NC_011080.1 3907220 3909331 D identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3907220..3909331 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042992.1 CDS trmH NC_011080.1 3909336 3910025 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3909336..3910025 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042993.1 CDS recG NC_011080.1 3910031 3912112 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3910031..3912112 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042994.1 CDS SNSL254_A4025 NC_011080.1 3912115 3912966 R hypothetical protein complement(3912115..3912966) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042995.1 CDS gltS NC_011080.1 3912969 3914174 R identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter complement(3912969..3914174) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042996.1 CDS SNSL254_A4027 NC_011080.1 3914402 3915793 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil-xanthine permease 3914402..3915793 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042997.1 CDS SNSL254_A4028 NC_011080.1 3915914 3917623 D identified by match to protein family HMM PF05170; AsmA family protein 3915914..3917623 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042998.1 CDS SNSL254_A4029 NC_011080.1 3917726 3920044 R 'catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides'; alpha-xylosidase complement(3917726..3920044) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002042999.1 CDS SNSL254_A4030 NC_011080.1 3920056 3921438 R may be involved in the transport of galactosides-pentoses-hexuronides; transporter complement(3920056..3921438) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043000.1 CDS SNSL254_A4032 NC_011080.1 3922085 3922225 D hypothetical protein 3922085..3922225 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043001.1 CDS SNSL254_A4033 NC_011080.1 3922576 3922734 D hypothetical protein 3922576..3922734 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043002.1 CDS SNSL254_A4034 NC_011080.1 3923442 3924059 D hypothetical protein 3923442..3924059 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083655.1 CDS SNSL254_A4035 NC_011080.1 3924134 3927001 D autotransporter MisL 3924134..3927001 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043003.1 CDS SNSL254_A4036 NC_011080.1 3927096 3927578 R hypothetical protein complement(3927096..3927578) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043004.1 CDS SNSL254_A4037 NC_011080.1 3927571 3928335 R identified by match to protein family HMM PF00486; transcriptional regulator C complement(3927571..3928335) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043005.1 CDS SNSL254_A4038 NC_011080.1 3929033 3929158 D identified by glimmer; hypothetical protein 3929033..3929158 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043006.1 CDS SNSL254_A4039 NC_011080.1 3929213 3929893 D identified by match to protein family HMM PF00857; hypothetical protein 3929213..3929893 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043007.1 CDS SNSL254_A4040 NC_011080.1 3930122 3930649 R hypothetical protein complement(3930122..3930649) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043008.1 CDS mgtA NC_011080.1 3930916 3933642 R identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase complement(3930916..3933642) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043010.1 CDS SNSL254_A4043 NC_011080.1 3933862 3934539 R identified by match to protein family HMM PF02308; Mg(2+) transport ATPase protein C complement(3933862..3934539) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043011.1 CDS SNSL254_A4044 NC_011080.1 3935018 3935965 D identified by match to protein family HMM PF00892; match to protein family HMM TIGR00950; carboxylate/amino acid/amine transporter 3935018..3935965 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043012.1 CDS SNSL254_A4045 NC_011080.1 3936008 3936937 R identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein complement(3936008..3936937) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043013.1 CDS SNSL254_A4046 NC_011080.1 3937174 3937917 R identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581; hypothetical protein complement(3937174..3937917) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043014.1 CDS SNSL254_A4047 NC_011080.1 3937904 3939013 R identified by match to protein family HMM PF03841; match to protein family HMM TIGR01437; pyridoxal phosphate-dependent enzyme complement(3937904..3939013) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043015.1 CDS SNSL254_A4048 NC_011080.1 3939017 3939877 R identified by match to protein family HMM PF03613; PTS system mannose/fructose/sorbose family transporter subunit IID complement(3939017..3939877) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043016.1 CDS SNSL254_A4049 NC_011080.1 3939874 3940623 R identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC complement(3939874..3940623) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043017.1 CDS SNSL254_A4050 NC_011080.1 3940769 3941254 R identified by match to protein family HMM PF03830; PTS system sorbose subfamily transporter subunit IIB complement(3940769..3941254) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043018.1 CDS SNSL254_A4051 NC_011080.1 3941265 3941690 R identified by match to protein family HMM PF03610; PTS system fructose-specific transporter subunit IIA complement(3941265..3941690) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043019.1 CDS SNSL254_A4052 NC_011080.1 3941909 3944707 R identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF07728; sigma-54 dependent transcription regulator complement(3941909..3944707) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043020.1 CDS SNSL254_A4053 NC_011080.1 3944904 3945197 D hypothetical protein 3944904..3945197 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043021.1 CDS SNSL254_A4054 NC_011080.1 3945182 3945325 D identified by glimmer; hypothetical protein 3945182..3945325 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043022.1 CDS SNSL254_A4055 NC_011080.1 3945303 3946685 D identified by match to protein family HMM PF00232; beta-glucosidase 3945303..3946685 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083656.1 CDS SNSL254_A4056 NC_011080.1 3946745 3947938 R purine ribonucleoside efflux pump NepI complement(3946745..3947938) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043023.1 CDS SNSL254_A4057 NC_011080.1 3948154 3948513 D identified by match to protein family HMM PF06296; hypothetical protein 3948154..3948513 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043024.1 CDS SNSL254_A4058 NC_011080.1 3948497 3948820 D identified by match to protein family HMM PF01381; DNA-binding protein 3948497..3948820 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043025.1 CDS SNSL254_A4059 NC_011080.1 3949812 3949925 R hypothetical protein complement(3949812..3949925) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043026.1 CDS SNSL254_A4060 NC_011080.1 3950135 3950404 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system HPr enzyme complement(3950135..3950404) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043027.1 CDS gatY NC_011080.1 3950414 3951274 R 'class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis'; fructose-1,6-bisphosphate aldolase complement(3950414..3951274) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043028.1 CDS SNSL254_A4062 NC_011080.1 3951337 3952821 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; carbohydrate kinase FGGY family protein complement(3951337..3952821) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043029.1 CDS SNSL254_A4063 NC_011080.1 3952814 3954172 R identified by match to protein family HMM PF03611; PTS system galactitol-specific transporter subunit IIC complement(3952814..3954172) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043030.1 CDS SNSL254_A4064 NC_011080.1 3954248 3954535 R PTS system transporter subunit IIB complement(3954248..3954535) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043031.1 CDS SNSL254_A4065 NC_011080.1 3954532 3955005 R identified by match to protein family HMM PF00359; PTS system mannitol/fructose-specific transporter subunit IIA complement(3954532..3955005) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043032.1 CDS SNSL254_A4066 NC_011080.1 3955023 3955766 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(3955023..3955766) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043033.1 CDS SNSL254_A4067 NC_011080.1 3956119 3956571 R identified by match to protein family HMM PF06711; hypothetical protein complement(3956119..3956571) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043034.1 CDS uhpT NC_011080.1 3956764 3958155 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter complement(3956764..3958155) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043035.1 CDS SNSL254_A4069 NC_011080.1 3958298 3959626 R membrane protein regulates uhpT expression; regulatory protein UhpC complement(3958298..3959626) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043036.1 CDS SNSL254_A4070 NC_011080.1 3959636 3961138 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB complement(3959636..3961138) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043037.1 CDS uhpA NC_011080.1 3961138 3961728 R 'response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter'; DNA-binding transcriptional activator UhpA complement(3961138..3961728) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043038.1 CDS SNSL254_A4072 NC_011080.1 3961803 3962816 R DeoX complement(3961803..3962816) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043039.1 CDS fucP NC_011080.1 3962828 3964144 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose:H+ symporter permease complement(3962828..3964144) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043040.1 CDS rbsK NC_011080.1 3964175 3965095 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase complement(3964175..3965095) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043041.1 CDS SNSL254_A4075 NC_011080.1 3965420 3966205 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; deoxyribose operon repressor 3965420..3966205 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043042.1 CDS ilvN NC_011080.1 3966207 3966497 R 'with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit'; acetolactate synthase 1 regulatory subunit complement(3966207..3966497) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043043.1 CDS ilvB NC_011080.1 3966501 3968189 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase catalytic subunit complement(3966501..3968189) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043044.1 CDS SNSL254_A4078 NC_011080.1 3969210 3970070 D identified by match to protein family HMM PF00892; hypothetical protein 3969210..3970070 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043045.1 CDS emrD NC_011080.1 3970273 3971457 D multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 3970273..3971457 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043046.1 CDS dsdC NC_011080.1 3972533 3973456 R regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC complement(3972533..3973456) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043047.1 CDS SNSL254_A4081 NC_011080.1 3973682 3975019 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 3973682..3975019 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043048.1 CDS dsdA NC_011080.1 3975037 3976359 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 3975037..3976359 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043049.1 CDS SNSL254_A4083 NC_011080.1 3976325 3976438 D identified by glimmer; hypothetical protein 3976325..3976438 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043050.1 CDS SNSL254_A4084 NC_011080.1 3976441 3976971 R hypothetical protein complement(3976441..3976971) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043051.1 CDS SNSL254_A4085 NC_011080.1 3976968 3977330 R hypothetical protein complement(3976968..3977330) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043052.1 CDS SNSL254_A4086 NC_011080.1 3977320 3977667 R identified by match to protein family HMM PF02656; hypothetical protein complement(3977320..3977667) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043053.1 CDS SNSL254_A4087 NC_011080.1 3977687 3977821 R identified by glimmer; hypothetical protein complement(3977687..3977821) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043054.1 CDS SNSL254_A4088 NC_011080.1 3977821 3977949 D identified by glimmer; hypothetical protein 3977821..3977949 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043055.1 CDS SNSL254_A4089 NC_011080.1 3978111 3979772 R identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein complement(3978111..3979772) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043056.1 CDS ibpB NC_011080.1 3979961 3980389 R '16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent'; heat shock chaperone IbpB complement(3979961..3980389) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043057.1 CDS ibpA NC_011080.1 3980499 3980918 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA complement(3980499..3980918) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043058.1 CDS SNSL254_A4093 NC_011080.1 3981176 3981295 R hypothetical protein complement(3981176..3981295) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043059.1 CDS SNSL254_A4092 NC_011080.1 3981294 3981554 D identified by match to protein family HMM PF07119; hypothetical protein 3981294..3981554 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083657.1 CDS SNSL254_A4094 NC_011080.1 3981556 3982782 R hypothetical protein complement(3981556..3982782) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043060.1 CDS SNSL254_A4095 NC_011080.1 3982904 3983947 R identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 complement(3982904..3983947) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043061.1 CDS SNSL254_A4096 NC_011080.1 3983944 3984501 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interchange protein DsbE complement(3983944..3984501) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043062.1 CDS ccmF NC_011080.1 3984498 3986429 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF complement(3984498..3986429) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043063.1 CDS SNSL254_A4098 NC_011080.1 3986426 3986905 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(3986426..3986905) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043064.1 CDS SNSL254_A4099 NC_011080.1 3986902 3987114 R identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; hypothetical protein complement(3986902..3987114) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043065.1 CDS SNSL254_A4100 NC_011080.1 3987111 3987857 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC superfamily protein complement(3987111..3987857) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043066.1 CDS ccmB NC_011080.1 3987900 3988559 R identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB complement(3987900..3988559) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043067.1 CDS ccmA NC_011080.1 3988556 3989182 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(3988556..3989182) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043068.1 CDS SNSL254_A4103 NC_011080.1 3989179 3990579 R identified by match to protein family HMM PF03150; cytochrome-c peroxidase complement(3989179..3990579) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043069.1 CDS torD NC_011080.1 3990769 3991401 R 'TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor'; chaperone protein TorD complement(3990769..3991401) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043070.1 CDS torA NC_011080.1 3991394 3993946 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; match to protein family HMM TIGR01409; match to protein family HMM TIGR02164; trimethylamine-N-oxide reductase TorA complement(3991394..3993946) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043071.1 CDS torC NC_011080.1 3993936 3995120 R identified by match to protein family HMM PF03264; match to protein family HMM TIGR02162; trimethylamine-N-oxide reductase c-type cytochrome TorC complement(3993936..3995120) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043072.1 CDS SNSL254_A4107 NC_011080.1 3995214 3995942 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 3995214..3995942 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043073.1 CDS torT NC_011080.1 3995915 3996955 R periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT complement(3995915..3996955) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043075.1 CDS torS NC_011080.1 3997083 3999770 D Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 3997083..3999770 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043076.1 CDS SNSL254_A4111 NC_011080.1 3999796 4001094 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00881; match to protein family HMM TIGR00893; d-galactonate transporter complement(3999796..4001094) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043077.1 CDS SNSL254_A4112 NC_011080.1 4001218 4002366 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; galactonate dehydratase complement(4001218..4002366) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043078.1 CDS SNSL254_A4113 NC_011080.1 4002363 4002980 R catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(4002363..4002980) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043079.1 CDS SNSL254_A4114 NC_011080.1 4002964 4003842 R identified by match to protein family HMM PF05035; 2-dehydro-3-deoxygalactonokinase complement(4002964..4003842) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043080.1 CDS dgoR NC_011080.1 4003839 4004528 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; galactonate operon transcriptional repressor complement(4003839..4004528) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043081.1 CDS SNSL254_A4116 NC_011080.1 4004789 4005634 R 'YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins'; sugar phosphatase complement(4004789..4005634) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043082.1 CDS SNSL254_A4117 NC_011080.1 4005939 4007201 D identified by match to protein family HMM PF07690; permease 4005939..4007201 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043083.1 CDS SNSL254_A4118 NC_011080.1 4007218 4008408 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein 4007218..4008408 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043084.1 CDS SNSL254_A4119 NC_011080.1 4008523 4009419 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 4008523..4009419 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043085.1 CDS gyrB NC_011080.1 4009438 4011852 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(4009438..4011852) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043086.1 CDS recF NC_011080.1 4011881 4012954 R 'Required for DNA replication; binds preferentially to single-stranded, linear DNA'; recombination protein F complement(4011881..4012954) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043087.1 CDS dnaN NC_011080.1 4013102 4014202 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(4013102..4014202) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043088.1 CDS dnaA NC_011080.1 4014207 4015607 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(4014207..4015607) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043089.1 CDS rpmH NC_011080.1 4016268 4016408 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4016268..4016408 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043090.1 CDS rnpA NC_011080.1 4016425 4016784 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4016425..4016784 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043091.1 CDS SNSL254_A4126 NC_011080.1 4017008 4018654 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 4017008..4018654 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043092.1 CDS trmE NC_011080.1 4018796 4020160 D 'in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE'; tRNA modification GTPase TrmE 4018796..4020160 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043093.1 CDS SNSL254_A4128 NC_011080.1 4020343 4021530 D Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 4020343..4021530 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043094.1 CDS SNSL254_A4129 NC_011080.1 4021499 4022458 D Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 4021499..4022458 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043095.1 CDS SNSL254_A4130 NC_011080.1 4022616 4023371 D hypothetical protein 4022616..4023371 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043096.1 CDS SNSL254_A4131 NC_011080.1 4023389 4023955 D identified by match to protein family HMM PF03358; hypothetical protein 4023389..4023955 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043097.1 CDS SNSL254_A4132 NC_011080.1 4024000 4025337 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; hypothetical protein complement(4024000..4025337) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043098.1 CDS SNSL254_A4133 NC_011080.1 4025506 4026171 D 'YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily'; 6-phosphogluconate phosphatase 4025506..4026171 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043099.1 CDS phoU NC_011080.1 4026266 4026991 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(4026266..4026991) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043100.1 CDS pstB NC_011080.1 4027006 4027815 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(4027006..4027815) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043101.1 CDS pstA NC_011080.1 4027866 4028756 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(4027866..4028756) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043102.1 CDS pstC NC_011080.1 4028756 4029715 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC complement(4028756..4029715) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043103.1 CDS pstS NC_011080.1 4029851 4030891 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein complement(4029851..4030891) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043104.1 CDS SNSL254_A4139 NC_011080.1 4031057 4032430 R identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427; PTS system D-fructose-specific transporter subunit IIBC complement(4031057..4032430) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043105.1 CDS SNSL254_A4140 NC_011080.1 4032479 4033297 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4032479..4033297) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043106.1 CDS SNSL254_A4141 NC_011080.1 4033359 4035149 D identified by match to protein family HMM PF00496; HTH-type transcriptional regulator SgrR 4033359..4035149 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043107.1 CDS glmS NC_011080.1 4035300 4037129 R 'Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source'; glucosamine--fructose-6-phosphate aminotransferase complement(4035300..4037129) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043108.1 CDS glmU NC_011080.1 4037318 4038688 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4037318..4038688) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043109.1 CDS SNSL254_A4144 NC_011080.1 4039008 4039706 R permease complement(4039008..4039706) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043110.1 CDS atpC NC_011080.1 4039936 4040355 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon complement(4039936..4040355) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043111.1 CDS atpD NC_011080.1 4040376 4041758 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(4040376..4041758) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043112.1 CDS atpG NC_011080.1 4041785 4042648 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(4041785..4042648) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043113.1 CDS atpA NC_011080.1 4042699 4044240 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(4042699..4044240) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043114.1 CDS atpH NC_011080.1 4044253 4044786 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(4044253..4044786) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043115.1 CDS atpF NC_011080.1 4044801 4045271 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B complement(4044801..4045271) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043116.1 CDS atpE NC_011080.1 4045331 4045570 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(4045331..4045570) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043117.1 CDS atpB NC_011080.1 4045617 4046432 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(4045617..4046432) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043118.2 CDS atpI NC_011080.1 4046441 4046821 R identified by match to protein family HMM PF03899; F0F1 ATP synthase subunit I complement(4046441..4046821) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043119.1 CDS SNSL254_A4154 NC_011080.1 4046936 4047079 R hypothetical protein complement(4046936..4047079) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043120.1 CDS SNSL254_A4155 NC_011080.1 4047187 4047324 R identified by glimmer; hypothetical protein complement(4047187..4047324) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043121.1 CDS gidB NC_011080.1 4047437 4048060 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4047437..4048060) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043122.1 CDS gidA NC_011080.1 4048163 4050052 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4048163..4050052) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043123.1 CDS mioC NC_011080.1 4050431 4050874 R 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin complement(4050431..4050874) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043124.1 CDS asnC NC_011080.1 4050964 4051422 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(4050964..4051422) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043125.1 CDS asnA NC_011080.1 4051573 4052565 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4051573..4052565 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043126.1 CDS yieM NC_011080.1 4052570 4054021 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein complement(4052570..4054021) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043127.1 CDS SNSL254_A4162 NC_011080.1 4054015 4055511 R 'interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase'; regulatory ATPase RavA complement(4054015..4055511) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043128.1 CDS trkD NC_011080.1 4055859 4057727 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4055859..4057727 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043129.1 CDS rbsD NC_011080.1 4057944 4058363 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4057944..4058363 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043130.1 CDS rbsA NC_011080.1 4058371 4059876 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 4058371..4059876 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043131.1 CDS rbsC NC_011080.1 4059882 4060847 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4059882..4060847 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043132.1 CDS rbsB NC_011080.1 4060872 4061762 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4060872..4061762 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043133.1 CDS rbsK NC_011080.1 4061895 4062824 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4061895..4062824 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043134.1 CDS SNSL254_A4169 NC_011080.1 4062828 4063826 D DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4062828..4063826 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043135.1 CDS SNSL254_A4170 NC_011080.1 4063792 4065219 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; inner membrane transport protein YieO complement(4063792..4065219) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043136.1 CDS SNSL254_A4171 NC_011080.1 4065231 4065935 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(4065231..4065935) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043137.1 CDS hdfR NC_011080.1 4071839 4072675 R Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR complement(4071839..4072675) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043138.1 CDS SNSL254_A4181 NC_011080.1 4072794 4073132 D identified by match to protein family HMM PF04219; hypothetical protein 4072794..4073132 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043139.1 CDS SNSL254_A4182 NC_011080.1 4073157 4074677 R 'among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function'; ATP-dependent protease complement(4073157..4074677) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043140.1 CDS ilvG NC_011080.1 4075267 4076913 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4075267..4076913 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043141.1 CDS ilvM NC_011080.1 4076910 4077173 D acetolactate synthase 2 regulatory subunit 4076910..4077173 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043142.1 CDS ilvE NC_011080.1 4077191 4078120 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4077191..4078120 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043143.1 CDS ilvD NC_011080.1 4078280 4080130 D 'catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis'; dihydroxy-acid dehydratase 4078280..4080130 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043144.1 CDS ilvA NC_011080.1 4080133 4081677 D 'threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway'; threonine dehydratase 4080133..4081677 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043145.1 CDS SNSL254_A4188 NC_011080.1 4081960 4082277 D identified by match to protein family HMM PF05973; hypothetical protein 4081960..4082277 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043146.1 CDS SNSL254_A4189 NC_011080.1 4082274 4082615 D XRE family transcriptional regulator 4082274..4082615 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043147.1 CDS SNSL254_A4190 NC_011080.1 4082618 4083505 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(4082618..4083505) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043148.1 CDS SNSL254_A4191 NC_011080.1 4083669 4085144 D 'catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis'; ketol-acid reductoisomerase 4083669..4085144 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043149.1 CDS SNSL254_A4192 NC_011080.1 4085236 4085517 R identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase C complement(4085236..4085517) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043150.1 CDS rep NC_011080.1 4086055 4088079 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4086055..4088079 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043151.1 CDS gppA NC_011080.1 4088119 4089600 R 'catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation'; guanosine pentaphosphate phosphohydrolase complement(4088119..4089600) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043152.1 CDS rhlB NC_011080.1 4089737 4091002 R 'enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation'; ATP-dependent RNA helicase RhlB complement(4089737..4091002) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043153.1 CDS trxA NC_011080.1 4091146 4091475 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 4091146..4091475 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043154.1 CDS rho NC_011080.1 4091894 4093153 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4091894..4093153 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043155.1 CDS wecA NC_011080.1 4093383 4094486 D identified by match to protein family HMM PF00953; match to protein family HMM TIGR02380; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4093383..4094486 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043156.1 CDS SNSL254_A4199 NC_011080.1 4094498 4095544 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4094498..4095544 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043157.1 CDS SNSL254_A4200 NC_011080.1 4095600 4096730 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 4095600..4096730 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043158.1 CDS wecC NC_011080.1 4096727 4097989 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4096727..4097989 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043159.1 CDS rfbB2 NC_011080.1 4097989 4099056 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 4097989..4099056 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043160.1 CDS SNSL254_A4203 NC_011080.1 4099089 4099313 D glucose-1-phosphate thymidylyltransferase 4099089..4099313 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043161.1 CDS wecD NC_011080.1 4099291 4099968 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR02382; TDP-fucosamine acetyltransferase 4099291..4099968 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043162.1 CDS wecE NC_011080.1 4099973 4101103 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4099973..4101103 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043163.1 CDS SNSL254_A4206 NC_011080.1 4101105 4102355 D identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 4101105..4102355 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043164.1 CDS wecF NC_011080.1 4102352 4103431 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4102352..4103431 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043165.1 CDS wzyE NC_011080.1 4103428 4104786 D enterobacterial common antigen polymerase; common antigen polymerase 4103428..4104786 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043166.1 CDS SNSL254_A4209 NC_011080.1 4104783 4105523 D identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; UDP-N-acetyl-D-mannosaminuronic acid transferase 4104783..4105523 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043167.1 CDS SNSL254_A4210 NC_011080.1 4105730 4107115 D uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transporter 4105730..4107115 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043168.1 CDS SNSL254_A4215 NC_011080.1 4107715 4107843 D identified by glimmer; hypothetical protein 4107715..4107843 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043169.1 CDS hemY NC_011080.1 4108232 4109431 R identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM TIGR00540; protoheme IX biogenesis protein complement(4108232..4109431) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043170.1 CDS SNSL254_A4218 NC_011080.1 4109431 4110600 R identified by match to protein family HMM PF04375; uroporphyrinogen III C-methyltransferase complement(4109431..4110600) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043171.1 CDS hemD NC_011080.1 4110622 4111362 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(4110622..4111362) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043172.1 CDS hemC NC_011080.1 4111359 4112321 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(4111359..4112321) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043173.1 CDS cyaA NC_011080.1 4112677 4115223 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4112677..4115223 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043174.1 CDS cyaY NC_011080.1 4115301 4115621 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(4115301..4115621) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043175.1 CDS SNSL254_A4223 NC_011080.1 4115691 4116071 R hypothetical protein complement(4115691..4116071) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043176.1 CDS SNSL254_A4226 NC_011080.1 4116777 4116980 D lipoprotein 4116777..4116980 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043177.1 CDS dapF NC_011080.1 4117017 4117841 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4117017..4117841 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043178.1 CDS SNSL254_A4228 NC_011080.1 4117838 4118545 D identified by match to protein family HMM PF04340; hypothetical protein 4117838..4118545 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043179.1 CDS xerC NC_011080.1 4118542 4119444 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4118542..4119444 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043180.1 CDS SNSL254_A4230 NC_011080.1 4119444 4120160 D YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4119444..4120160 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043181.1 CDS uvrD NC_011080.1 4120296 4122458 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4120296..4122458 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043182.1 CDS corA NC_011080.1 4122930 4123880 D responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4122930..4123880 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043183.1 CDS SNSL254_A4233 NC_011080.1 4123928 4124308 R hypothetical protein complement(4123928..4124308) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043184.1 CDS SNSL254_A4234 NC_011080.1 4124483 4124779 D hypothetical protein 4124483..4124779 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043185.1 CDS rarD NC_011080.1 4124819 4125706 R identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein complement(4124819..4125706) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043186.1 CDS SNSL254_A4236 NC_011080.1 4125750 4126217 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein complement(4125750..4126217) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043187.1 CDS SNSL254_A4237 NC_011080.1 4126382 4127251 D catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4126382..4127251 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043188.1 CDS recQ NC_011080.1 4127317 4129164 D 'functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway'; ATP-dependent DNA helicase RecQ 4127317..4129164 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043189.1 CDS rhtC NC_011080.1 4129228 4129848 D identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; threonine efflux system 4129228..4129848 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043190.1 CDS rhtB NC_011080.1 4129888 4130508 R identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; homoserine/homoserine lactone efflux protein complement(4129888..4130508) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043191.1 CDS pldB NC_011080.1 4130619 4131635 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4130619..4131635 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083658.1 CDS SNSL254_A4242 NC_011080.1 4131651 4132451 D hydrolase 4131651..4132451 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043192.1 CDS metR NC_011080.1 4133319 4134272 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator MetR complement(4133319..4134272) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043193.1 CDS metE NC_011080.1 4134521 4136785 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4134521..4136785 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043194.1 CDS SNSL254_A4245 NC_011080.1 4136849 4136968 D identified by glimmer; hypothetical protein 4136849..4136968 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043195.1 CDS SNSL254_A4246 NC_011080.1 4137157 4138452 D identified by match to protein family HMM PF02810; match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 4137157..4138452 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043196.2 CDS SNSL254_A4247 NC_011080.1 4138532 4139344 R identified by match to protein family HMM PF01738; dienelactone hydrolase complement(4138532..4139344) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043197.1 CDS udp NC_011080.1 4139603 4140364 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4139603..4140364 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043198.1 CDS SNSL254_A4249 NC_011080.1 4140504 4141934 D YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4140504..4141934 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043199.1 CDS ubiE NC_011080.1 4142030 4142785 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4142030..4142785 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043200.1 CDS SNSL254_A4251 NC_011080.1 4142795 4143400 D identified by match to protein family HMM PF02036; hypothetical protein 4142795..4143400 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043201.1 CDS ubiB NC_011080.1 4143397 4145037 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 4143397..4145037 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043202.1 CDS tatA NC_011080.1 4145243 4145497 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 4145243..4145497 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043203.1 CDS SNSL254_A4254 NC_011080.1 4145501 4146049 D mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4145501..4146049 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043204.1 CDS tatC NC_011080.1 4146052 4146831 D with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4146052..4146831 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043205.1 CDS SNSL254_A4256 NC_011080.1 4146873 4147655 D magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4146873..4147655 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043206.1 CDS rfaH NC_011080.1 4147663 4148151 R identified by match to protein family HMM PF02357; match to protein family HMM TIGR01955; transcriptional activator RfaH complement(4147663..4148151) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043207.1 CDS ubiD NC_011080.1 4148337 4149815 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4148337..4149815 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043208.1 CDS fre NC_011080.1 4149901 4150602 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4149901..4150602 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043209.1 CDS SNSL254_A4260 NC_011080.1 4150856 4152679 D identified by match to protein family HMM PF05935; arylsulfotransferase 4150856..4152679 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043210.1 CDS fadA NC_011080.1 4152876 4154039 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(4152876..4154039) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043211.1 CDS fadB NC_011080.1 4154049 4156238 R 'includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids'; multifunctional fatty acid oxidation complex subunit alpha complement(4154049..4156238) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043212.1 CDS pepQ NC_011080.1 4156427 4157758 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4156427..4157758 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043213.1 CDS SNSL254_A4264 NC_011080.1 4157758 4158372 D identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257; hypothetical protein 4157758..4158372 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043214.1 CDS trkH NC_011080.1 4158411 4159862 D identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; potassium transporter 4158411..4159862 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043215.1 CDS hemG NC_011080.1 4159874 4160419 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4159874..4160419 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043216.1 CDS mobB NC_011080.1 4166270 4166800 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein MobB complement(4166270..4166800) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043217.1 CDS mobA NC_011080.1 4166782 4167366 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4166782..4167366) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043218.1 CDS SNSL254_A4276 NC_011080.1 4167436 4167705 D identified by match to protein family HMM PF06288; hypothetical protein 4167436..4167705 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043219.1 CDS SNSL254_A4277 NC_011080.1 4167782 4168768 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4167782..4168768 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043220.1 CDS SNSL254_A4278 NC_011080.1 4168785 4169408 D identified by match to protein family HMM PF01323; protein disulfide isomerase I 4168785..4169408 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043221.1 CDS SNSL254_A4279 NC_011080.1 4169421 4170329 R identified by match to protein family HMM PF01553; acyltransferase complement(4169421..4170329) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043222.1 CDS SNSL254_A4280 NC_011080.1 4170527 4170658 R identified by glimmer; hypothetical protein complement(4170527..4170658) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043223.1 CDS SNSL254_A4281 NC_011080.1 4170717 4173503 D 'has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair'; DNA polymerase I 4170717..4173503 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043224.1 CDS engB NC_011080.1 4173838 4174470 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(4173838..4174470) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043225.1 CDS SNSL254_A4285 NC_011080.1 4175053 4175568 D identified by match to protein family HMM PF04220; hypothetical protein 4175053..4175568 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043226.1 CDS hemN NC_011080.1 4175757 4177130 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4175757..4177130 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043227.1 CDS glnG NC_011080.1 4177443 4178852 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) complement(4177443..4178852) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043228.1 CDS glnL NC_011080.1 4178861 4179910 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) complement(4178861..4179910) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043229.1 CDS glnA NC_011080.1 4180185 4181594 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(4180185..4181594) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043230.1 CDS typA NC_011080.1 4181970 4183793 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein 4181970..4183793 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043231.1 CDS SNSL254_A4291 NC_011080.1 4183848 4184027 R hypothetical protein complement(4183848..4184027) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043232.1 CDS ompL NC_011080.1 4184184 4184876 R porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L complement(4184184..4184876) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043233.1 CDS SNSL254_A4293 NC_011080.1 4184944 4186362 R identified by match to protein family HMM TIGR00792; sugar (Glycoside-Pentoside-Hexuronide) transporter complement(4184944..4186362) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043234.1 CDS SNSL254_A4294 NC_011080.1 4186408 4187790 R identified by match to protein family HMM TIGR00792; inner membrane symporter YihP complement(4186408..4187790) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043235.1 CDS SNSL254_A4295 NC_011080.1 4187836 4189872 R identified by match to protein family HMM PF01055; alpha-glucosidase complement(4187836..4189872) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043236.1 CDS SNSL254_A4296 NC_011080.1 4189996 4190871 R identified by match to protein family HMM PF01925; hypothetical protein complement(4189996..4190871) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043237.1 CDS SNSL254_A4297 NC_011080.1 4190960 4191847 R identified by match to protein family HMM PF01263; aldose-1-epimerase complement(4190960..4191847) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043238.1 CDS SNSL254_A4298 NC_011080.1 4191934 4193175 R identified by match to protein family HMM PF07221; N-acylglucosamine 2-epimerase complement(4191934..4193175) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043239.1 CDS SNSL254_A4299 NC_011080.1 4193191 4194069 R identified by match to protein family HMM PF01791; deoxyribose-phosphate aldolase complement(4193191..4194069) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043240.1 CDS SNSL254_A4300 NC_011080.1 4194092 4194988 R identified by match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase complement(4194092..4194988) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043241.1 CDS SNSL254_A4301 NC_011080.1 4194976 4195095 R identified by glimmer; hypothetical protein complement(4194976..4195095) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043242.1 CDS SNSL254_A4302 NC_011080.1 4195153 4196049 D identified by match to protein family HMM PF00294; kinase PfkB family 4195153..4196049 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043243.1 CDS SNSL254_A4303 NC_011080.1 4196083 4196886 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; glycerol-3-phosphate regulon repressor 4196083..4196886 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043244.1 CDS yihX NC_011080.1 4197077 4197676 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; phosphatase 4197077..4197676 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043245.1 CDS rbn NC_011080.1 4197670 4198542 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4197670..4198542 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043246.1 CDS dtd NC_011080.1 4198539 4198976 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4198539..4198976 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043247.1 CDS SNSL254_A4307 NC_011080.1 4198973 4199962 D identified by match to protein family HMM PF00583; match to protein family HMM PF09500; match to protein family HMM TIGR02447; GNAT family acetyltransferase 4198973..4199962 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043248.1 CDS SNSL254_A4308 NC_011080.1 4199977 4200405 R identified by match to protein family HMM PF01381; hypothetical protein complement(4199977..4200405) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043249.1 CDS SNSL254_A4309 NC_011080.1 4200420 4200731 R hypothetical protein complement(4200420..4200731) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043250.1 CDS SNSL254_A4310 NC_011080.1 4200817 4201746 R identified by match to protein family HMM PF07859; acetyl esterase complement(4200817..4201746) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043252.2 CDS SNSL254_A4311 NC_011080.1 4201964 4202275 D hypothetical protein 4201964..4202275 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043253.1 CDS SNSL254_A4313 NC_011080.1 4202276 4202566 D identified by match to protein family HMM PF01381; XRE family transcriptional regulator 4202276..4202566 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043254.1 CDS fdhE NC_011080.1 4202613 4203542 R required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE complement(4202613..4203542) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043255.1 CDS fdoI NC_011080.1 4203539 4204174 R cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma complement(4203539..4204174) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043256.1 CDS fdoH NC_011080.1 4204171 4205073 R identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase-O, iron-sulfur subunit complement(4204171..4205073) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043257.1 CDS fdhD NC_011080.1 4208331 4209167 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4208331..4209167 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043258.1 CDS SNSL254_A4320 NC_011080.1 4209435 4210466 R hypothetical protein complement(4209435..4210466) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043259.1 CDS SNSL254_A4321 NC_011080.1 4210649 4211749 D hypothetical protein 4210649..4211749 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043260.1 CDS SNSL254_A4322 NC_011080.1 4211746 4211877 D identified by glimmer; hypothetical protein 4211746..4211877 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043261.1 CDS SNSL254_A4323 NC_011080.1 4212092 4212415 R identified by match to protein family HMM PF05437; branched-chain amino acid transporter complement(4212092..4212415) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043262.1 CDS SNSL254_A4324 NC_011080.1 4212415 4213074 R identified by match to protein family HMM PF03591; AzlC family protein complement(4212415..4213074) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043263.1 CDS SNSL254_A4325 NC_011080.1 4213175 4213723 D identified by match to protein family HMM PF01381; match to protein family HMM PF07883; XRE family transcriptional regulator 4213175..4213723 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043264.1 CDS rhaU NC_011080.1 4213812 4214126 R identified by match to protein family HMM PF05336; match to protein family HMM TIGR02625; L-rhamnose 1-epimerase complement(4213812..4214126) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043265.1 CDS fucO NC_011080.1 4214123 4215271 R identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; lactaldehyde reductase complement(4214123..4215271) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043266.1 CDS rhaD NC_011080.1 4215398 4216225 R identified by match to protein family HMM PF00596; match to protein family HMM TIGR02624; rhamnulose-1-phosphate aldolase complement(4215398..4216225) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043267.1 CDS rhaA NC_011080.1 4216368 4217627 R catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase complement(4216368..4217627) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043268.1 CDS rhaB NC_011080.1 4217624 4219093 R catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase complement(4217624..4219093) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043269.1 CDS SNSL254_A4331 NC_011080.1 4219381 4220217 D activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4219381..4220217 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043270.1 CDS SNSL254_A4332 NC_011080.1 4220370 4221218 D activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4220370..4221218 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043271.1 CDS SNSL254_A4333 NC_011080.1 4221215 4222249 R transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter complement(4221215..4222249) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043272.1 CDS SNSL254_A4334 NC_011080.1 4222253 4222384 D hypothetical protein 4222253..4222384 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043274.1 CDS SNSL254_A4336 NC_011080.1 4222718 4222843 D identified by glimmer; hypothetical protein 4222718..4222843 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043275.1 CDS SNSL254_A4337 NC_011080.1 4222880 4223551 D identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 4222880..4223551 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043276.1 CDS SNSL254_A4338 NC_011080.1 4223710 4225017 R identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; trap dicarboxylate transporter subunit DctM complement(4223710..4225017) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043277.1 CDS SNSL254_A4339 NC_011080.1 4225010 4225525 R identified by match to protein family HMM PF04290; trap dicarboxylate transporter subunit DctQ complement(4225010..4225525) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043278.1 CDS SNSL254_A4340 NC_011080.1 4225544 4226527 R identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter subunit DctP complement(4225544..4226527) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043279.1 CDS sodA NC_011080.1 4226856 4227476 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4226856..4227476 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043280.1 CDS SNSL254_A4342 NC_011080.1 4227546 4228235 D identified by match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 4227546..4228235 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043281.1 CDS SNSL254_A4343 NC_011080.1 4228247 4228642 D hypothetical protein 4228247..4228642 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043282.1 CDS SNSL254_A4344 NC_011080.1 4228763 4228966 D identified by glimmer; hypothetical protein 4228763..4228966 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043283.1 CDS cpxA NC_011080.1 4229014 4230387 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein complement(4229014..4230387) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043284.1 CDS cpxR NC_011080.1 4230384 4231082 R response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR complement(4230384..4231082) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043285.1 CDS cpxP NC_011080.1 4231233 4231733 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4231233..4231733 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043286.1 CDS SNSL254_A4348 NC_011080.1 4231918 4232898 R identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family complement(4231918..4232898) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043287.1 CDS SNSL254_A4349 NC_011080.1 4233398 4233670 D Cox protein 4233398..4233670 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043288.1 CDS SNSL254_A4350 NC_011080.1 4233727 4233849 D hypothetical protein 4233727..4233849 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043289.1 CDS SNSL254_A4351 NC_011080.1 4233849 4234340 D replication gene B protein 4233849..4234340 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043290.1 CDS SNSL254_A4352 NC_011080.1 4234404 4234628 D hypothetical protein 4234404..4234628 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043291.1 CDS SNSL254_A4355 NC_011080.1 4234988 4235125 R identified by glimmer; hypothetical protein complement(4234988..4235125) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043292.1 CDS SNSL254_A4356 NC_011080.1 4235151 4235426 D gp83 4235151..4235426 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043293.1 CDS SNSL254_A4357 NC_011080.1 4235569 4237692 D identified by match to protein family HMM PF05840; replication gene A protein 4235569..4237692 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043294.1 CDS SNSL254_A4358 NC_011080.1 4238065 4239105 R identified by match to protein family HMM PF02661; Fic protein family complement(4238065..4239105) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043295.1 CDS SNSL254_A4360 NC_011080.1 4239239 4239670 R hypothetical protein complement(4239239..4239670) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043296.1 CDS SNSL254_A4359 NC_011080.1 4239669 4239860 D identified by glimmer; hypothetical protein 4239669..4239860 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043297.1 CDS SNSL254_A4361 NC_011080.1 4240024 4240161 R identified by glimmer; hypothetical protein complement(4240024..4240161) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043298.1 CDS SNSL254_A4362 NC_011080.1 4240189 4240326 D identified by glimmer; hypothetical protein 4240189..4240326 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043299.1 CDS SNSL254_A4363 NC_011080.1 4240381 4241418 R identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540; phage portal protein pbsx family complement(4240381..4241418) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043300.1 CDS SNSL254_A4364 NC_011080.1 4241418 4243187 R identified by match to protein family HMM PF03237; match to protein family HMM PF06056; hypothetical protein complement(4241418..4243187) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043301.1 CDS SNSL254_A4365 NC_011080.1 4243352 4244215 D identified by match to protein family HMM PF05929; phage capsid scaffolding protein GpO 4243352..4244215 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043302.1 CDS SNSL254_A4366 NC_011080.1 4244247 4245407 D identified by match to protein family HMM PF05125; match to protein family HMM TIGR01551; phage major capsid protein P2 family 4244247..4245407 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043303.1 CDS SNSL254_A4367 NC_011080.1 4245411 4246169 D identified by match to protein family HMM PF05944; match to protein family HMM PF07719; gpM 4245411..4246169 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043304.1 CDS SNSL254_A4368 NC_011080.1 4246122 4246241 R identified by glimmer; hypothetical protein complement(4246122..4246241) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043305.1 CDS SNSL254_A4369 NC_011080.1 4246267 4246767 D identified by match to protein family HMM PF05926; phage head completion protein 4246267..4246767 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043306.1 CDS SNSL254_A4370 NC_011080.1 4246767 4246970 D identified by match to protein family HMM PF05489; phage Tail Protein X 4246767..4246970 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043307.1 CDS SNSL254_A4371 NC_011080.1 4246973 4247182 D prophage Hp1 family holin 4246973..4247182 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043308.1 CDS SNSL254_A4372 NC_011080.1 4247166 4247675 D identified by match to protein family HMM PF00959; glycoside hydrolase 4247166..4247675 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043309.1 CDS SNSL254_A4373 NC_011080.1 4247672 4248085 D identified by match to protein family HMM TIGR03495; phage lysis regulatory protein 4247672..4248085 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043310.1 CDS SNSL254_A4374 NC_011080.1 4248193 4248660 D identified by match to protein family HMM PF06891; P2 phage tail completion protein R 4248193..4248660 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043311.1 CDS SNSL254_A4375 NC_011080.1 4248653 4249120 D identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635; phage virion morphogenesis protein 4248653..4249120 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043312.1 CDS SNSL254_A4376 NC_011080.1 4249158 4250501 D hypothetical protein 4249158..4250501 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043313.1 CDS SNSL254_A4377 NC_011080.1 4250578 4251219 D identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644; baseplate assembly protein V 4250578..4251219 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043314.1 CDS SNSL254_A4378 NC_011080.1 4251216 4251563 D identified by match to protein family HMM PF04965; baseplate assembly protein W 4251216..4251563 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043315.1 CDS SNSL254_A4379 NC_011080.1 4251570 4252478 D identified by match to protein family HMM PF04865; baseplate assembly protein J 4251570..4252478 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043316.1 CDS SNSL254_A4380 NC_011080.1 4252471 4253001 D identified by match to protein family HMM PF09684; match to protein family HMM TIGR01634; phage tail protein I 4252471..4253001 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043317.1 CDS SNSL254_A4381 NC_011080.1 4253012 4254754 D identified by match to protein family HMM PF03406; match to protein family HMM PF07484; gp19 4253012..4254754 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043318.1 CDS SNSL254_A4382 NC_011080.1 4254754 4255323 D identified by match to protein family HMM PF02413; phage tail assembly protein 4254754..4255323 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043319.1 CDS SNSL254_A4383 NC_011080.1 4255458 4256645 D identified by match to protein family HMM PF04984; phage tail sheath protein 4255458..4256645 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043320.1 CDS SNSL254_A4384 NC_011080.1 4256661 4257179 D identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611; phage major tail tube protein 4256661..4257179 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083659.1 CDS SNSL254_A4385 NC_011080.1 4257242 4257577 D phage tail protein E 4257242..4257577 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043321.1 CDS SNSL254_A4387 NC_011080.1 4257722 4260163 D identified by match to protein family HMM TIGR01760; gp24 4257722..4260163 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043322.1 CDS SNSL254_A4388 NC_011080.1 4260172 4260660 D identified by match to protein family HMM PF06995; gp25 4260172..4260660 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043323.1 CDS SNSL254_A4389 NC_011080.1 4260657 4261826 D identified by match to protein family HMM PF05954; late control gene D protein 4260657..4261826 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043324.1 CDS fieF NC_011080.1 4262860 4263762 D 'member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers'; ferrous iron efflux protein F 4262860..4263762 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043325.1 CDS pfkA NC_011080.1 4263947 4264909 D 'catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis'; 6-phosphofructokinase 4263947..4264909 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043326.1 CDS SNSL254_A4392 NC_011080.1 4265113 4266102 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; sulfate transporter subunit 4265113..4266102 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083660.1 CDS cdh NC_011080.1 4266203 4266958 D CDP-diacylglycerol pyrophosphatase 4266203..4266958 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043327.1 CDS SNSL254_A4394 NC_011080.1 4267221 4268555 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sugar (Glycoside-Pentoside-Hexuronide) transporter 4267221..4268555 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043328.1 CDS SNSL254_A4395 NC_011080.1 4268566 4269525 D phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4268566..4269525 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043329.1 CDS SNSL254_A4396 NC_011080.1 4269535 4270575 D identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase superfamily 4269535..4270575 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043330.1 CDS SNSL254_A4397 NC_011080.1 4270638 4271360 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; regulatory protein 4270638..4271360 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043331.1 CDS SNSL254_A4398 NC_011080.1 4271458 4271769 D hypothetical protein 4271458..4271769 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043332.1 CDS SNSL254_A4399 NC_011080.1 4271859 4272209 R identified by match to protein family HMM PF07883; polyketide synthase complement(4271859..4272209) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043333.1 CDS SNSL254_A4400 NC_011080.1 4272223 4273773 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; autoinducer-2 (AI-2) kinase complement(4272223..4273773) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043334.1 CDS SNSL254_A4401 NC_011080.1 4273902 4274861 R identified by match to protein family HMM PF04198; sugar-binding domain-containing protein complement(4273902..4274861) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043335.1 CDS SNSL254_A4403 NC_011080.1 4274988 4275131 R identified by glimmer; hypothetical protein complement(4274988..4275131) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043336.1 CDS SNSL254_A4402 NC_011080.1 4275117 4276652 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein ego 4275117..4276652 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043337.1 CDS SNSL254_A4404 NC_011080.1 4276646 4277689 D identified by match to protein family HMM PF02653; ABC transporter permease 4276646..4277689 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043338.1 CDS SNSL254_A4405 NC_011080.1 4277689 4278687 D identified by match to protein family HMM PF02653; ABC transporter permease 4277689..4278687 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043339.1 CDS SNSL254_A4406 NC_011080.1 4278695 4279738 D hypothetical protein 4278695..4279738 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043340.1 CDS SNSL254_A4407 NC_011080.1 4279767 4280642 D identified by match to protein family HMM PF01791; aldolase 4279767..4280642 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043341.1 CDS SNSL254_A4408 NC_011080.1 4280722 4281015 D identified by match to protein family HMM PF03992; autoinducer-2 (AI-2) modifying protein LsrG 4280722..4281015 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043342.1 CDS SNSL254_A4409 NC_011080.1 4281025 4281789 D identified by match to protein family HMM PF00834; epimerase 4281025..4281789 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043343.1 CDS tpiA NC_011080.1 4281881 4282648 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(4281881..4282648) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043344.1 CDS SNSL254_A4411 NC_011080.1 4282761 4283357 R identified by match to protein family HMM PF07305; hypothetical protein complement(4282761..4283357) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043345.1 CDS SNSL254_A4412 NC_011080.1 4283458 4283886 D identified by match to protein family HMM PF05656; hypothetical protein 4283458..4283886 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043346.1 CDS SNSL254_A4413 NC_011080.1 4283992 4284738 R identified by match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin-NADP reductase complement(4283992..4284738) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043347.1 CDS glpX NC_011080.1 4284835 4285845 R 'type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese'; fructose 1,6-bisphosphatase II complement(4284835..4285845) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043348.1 CDS glpK NC_011080.1 4285957 4287465 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(4285957..4287465) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043349.1 CDS glpF NC_011080.1 4287486 4288331 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein complement(4287486..4288331) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043350.1 CDS SNSL254_A4417 NC_011080.1 4288730 4288969 D identified by match to protein family HMM PF06005; hypothetical protein 4288730..4288969 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043351.1 CDS SNSL254_A4418 NC_011080.1 4289054 4289194 R identified by glimmer; hypothetical protein complement(4289054..4289194) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043352.1 CDS rraA NC_011080.1 4289191 4289676 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(4289191..4289676) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043353.1 CDS menA NC_011080.1 4289769 4290710 R 'catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate'; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(4289769..4290710) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043354.1 CDS hslU NC_011080.1 4290765 4292096 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(4290765..4292096) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043355.1 CDS hslV NC_011080.1 4292106 4292636 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(4292106..4292636) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043356.1 CDS ftsN NC_011080.1 4292728 4293714 R identified by match to protein family HMM PF05036; match to protein family HMM TIGR02223; cell division protein FtsN complement(4292728..4293714) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043357.1 CDS cytR NC_011080.1 4293808 4294833 R 'negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins'; DNA-binding transcriptional regulator CytR complement(4293808..4294833) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043358.1 CDS SNSL254_A4425 NC_011080.1 4294988 4297186 R 'binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity'; primosome assembly protein PriA complement(4294988..4297186) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043359.1 CDS rpmE NC_011080.1 4297390 4297602 D 'RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome'; 50S ribosomal protein L31 4297390..4297602 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043360.1 CDS SNSL254_A4427 NC_011080.1 4297648 4298310 R identified by match to protein family HMM PF09601; match to protein family HMM TIGR02117; hypothetical protein complement(4297648..4298310) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043361.1 CDS SNSL254_A4429 NC_011080.1 4298511 4300208 R identified by match to protein family HMM PF05935; arylsulfotransferase complement(4298511..4300208) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043363.1 CDS metJ NC_011080.1 4300758 4301075 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(4300758..4301075) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043364.1 CDS metB NC_011080.1 4301340 4302500 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4301340..4302500 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043365.1 CDS metL NC_011080.1 4302503 4304935 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4302503..4304935 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043366.1 CDS SNSL254_A4433 NC_011080.1 4305051 4305908 R identified by match to protein family HMM PF00924; match to protein family HMM PF05552; mechanosensitive ion channel protein MscS complement(4305051..4305908) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043367.1 CDS SNSL254_A4434 NC_011080.1 4305911 4306909 R hypothetical protein complement(4305911..4306909) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043368.1 CDS SNSL254_A4435 NC_011080.1 4307144 4308268 R hypothetical protein complement(4307144..4308268) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043369.1 CDS SNSL254_A4436 NC_011080.1 4308404 4309960 D identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 4308404..4309960 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043370.1 CDS metF NC_011080.1 4310155 4311045 D 'MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor'; 5,10-methylenetetrahydrofolate reductase 4310155..4311045 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043371.1 CDS katG NC_011080.1 4311210 4313390 D identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 4311210..4313390 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043372.1 CDS SNSL254_A4439 NC_011080.1 4313448 4314071 R identified by match to protein family HMM PF06940; NADH:ubiquinone oxidoreductase, na complement(4313448..4314071) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043373.1 CDS gldA NC_011080.1 4314330 4315433 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(4314330..4315433) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043374.1 CDS fsaB NC_011080.1 4315445 4316107 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase complement(4315445..4316107) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043375.1 CDS SNSL254_A4442 NC_011080.1 4316118 4318607 R identified by match to protein family HMM PF00359; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; multiphosphoryl transfer protein 2 complement(4316118..4318607) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043376.1 CDS SNSL254_A4443 NC_011080.1 4318928 4320007 D 'FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site'; PTS system fructose transporter subunit IIC 4318928..4320007 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043377.1 CDS SNSL254_A4444 NC_011080.1 4320022 4320342 D 'FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS'; PTS system fructose-like transporter subunit IIB 4320022..4320342 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043378.1 CDS pflD NC_011080.1 4320441 4322738 D involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; formate acetyltransferase 2 4320441..4322738 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043379.1 CDS SNSL254_A4446 NC_011080.1 4322704 4323582 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; pyruvate formate lyase II activase 4322704..4323582 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043380.1 CDS SNSL254_A4447 NC_011080.1 4323584 4323937 D 'FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog'; fructose-like phosphotransferase EIIB subunit 3 4323584..4323937 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043381.1 CDS SNSL254_A4448 NC_011080.1 4323924 4324775 R identified by match to protein family HMM PF00165; araC family transcriptional regulator complement(4323924..4324775) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043382.1 CDS SNSL254_A4449 NC_011080.1 4324936 4326669 R identified by match to protein family HMM PF00884; hypothetical protein complement(4324936..4326669) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043383.1 CDS ppc NC_011080.1 4326880 4329531 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(4326880..4329531) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043384.1 CDS argE NC_011080.1 4329900 4331051 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(4329900..4331051) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043385.1 CDS argC NC_011080.1 4331140 4332144 D 'catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate'; N-acetyl-gamma-glutamyl-phosphate reductase 4331140..4332144 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043386.1 CDS argB NC_011080.1 4332155 4332928 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4332155..4332928 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043387.1 CDS argH NC_011080.1 4333045 4334421 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4333045..4334421 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043388.1 CDS oxyR NC_011080.1 4334705 4335622 D 'Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA'; DNA-binding transcriptional regulator OxyR 4334705..4335622 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043389.1 CDS sthA NC_011080.1 4335605 4337017 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(4335605..4337017) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083661.1 CDS fabR NC_011080.1 4337207 4337839 D fatty acid biosynthesis regulator 4337207..4337839 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043390.1 CDS SNSL254_A4459 NC_011080.1 4337855 4338214 D identified by match to protein family HMM PF07226; hypothetical protein 4337855..4338214 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043391.1 CDS trmA NC_011080.1 4338261 4339361 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(4338261..4339361) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043392.1 CDS btuB NC_011080.1 4339735 4341579 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4339735..4341579 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043393.2 CDS murI NC_011080.1 4341524 4342375 D 'converts L-glutamate to D-glutamate, a component of peptidoglycan'; glutamate racemase 4341524..4342375 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043394.1 CDS murB NC_011080.1 4348126 4349154 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4348126..4349154 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043395.1 CDS SNSL254_A4471 NC_011080.1 4349151 4350113 D 'catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon'; biotin--protein ligase 4349151..4350113 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043396.1 CDS coaA NC_011080.1 4350148 4351098 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(4350148..4351098) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043398.1 CDS tuf1 NC_011080.1 4352057 4353241 D 'EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu'; elongation factor Tu 4352057..4353241 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043399.1 CDS secE NC_011080.1 4353471 4353854 D 'forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force'; preprotein translocase subunit SecE 4353471..4353854 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043400.1 CDS nusG NC_011080.1 4353856 4354401 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4353856..4354401 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043401.1 CDS rplK NC_011080.1 4354559 4354987 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4354559..4354987 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043402.1 CDS rplA NC_011080.1 4354991 4355695 D 'in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA'; 50S ribosomal protein L1 4354991..4355695 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043403.1 CDS rplJ NC_011080.1 4356115 4356612 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4356115..4356612 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043404.1 CDS rplL NC_011080.1 4356679 4357044 D 'present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors'; 50S ribosomal protein L7/L12 4356679..4357044 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043405.1 CDS rpoB NC_011080.1 4357362 4361390 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4357362..4361390 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043406.1 CDS rpoC NC_011080.1 4361467 4365690 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4361467..4365690 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043407.1 CDS thiH NC_011080.1 4367159 4368292 R 'in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center'; thiamine biosynthesis protein ThiH complement(4367159..4368292) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043408.1 CDS thiG NC_011080.1 4368289 4369074 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(4368289..4369074) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043409.1 CDS thiS NC_011080.1 4369061 4369261 R 'with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate'; sulfur carrier protein ThiS complement(4369061..4369261) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043410.1 CDS thiF NC_011080.1 4369242 4370000 R identified by match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356; thiazole biosynthesis adenylyltransferase ThiF complement(4369242..4370000) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043411.1 CDS thiE NC_011080.1 4369993 4370628 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase complement(4369993..4370628) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043412.1 CDS thiC NC_011080.1 4370628 4372523 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(4370628..4372523) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043413.1 CDS SNSL254_A4498 NC_011080.1 4372887 4373375 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(4372887..4373375) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043414.1 CDS nudC NC_011080.1 4373468 4374241 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4373468..4374241 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043415.1 CDS hemE NC_011080.1 4374282 4375346 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4374282..4375346 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043416.1 CDS nfi NC_011080.1 4375356 4376027 D 'Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures'; endonuclease V 4375356..4376027 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043417.1 CDS SNSL254_A4502 NC_011080.1 4376069 4376659 D identified by match to protein family HMM PF04222; hypothetical protein 4376069..4376659 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043418.1 CDS hupA NC_011080.1 4376846 4377118 D histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4376846..4377118 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043419.1 CDS SNSL254_A4504 NC_011080.1 4377130 4377822 D identified by match to protein family HMM PF07356; hypothetical protein 4377130..4377822 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043420.1 CDS zraP NC_011080.1 4377864 4378319 R zinc resistance protein complement(4377864..4378319) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043421.1 CDS SNSL254_A4506 NC_011080.1 4378573 4379970 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein ZraS 4378573..4379970 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043422.1 CDS SNSL254_A4507 NC_011080.1 4379976 4381301 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4379976..4381301 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043423.1 CDS purD NC_011080.1 4381298 4382587 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(4381298..4382587) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043424.1 CDS purH NC_011080.1 4382603 4384192 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(4382603..4384192) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043425.1 CDS SNSL254_A4517 NC_011080.1 4390405 4390842 R identified by match to protein family HMM PF00583; hypothetical protein complement(4390405..4390842) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043426.1 CDS metA NC_011080.1 4390999 4391928 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4390999..4391928 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043427.1 CDS aceB NC_011080.1 4392194 4393798 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4392194..4393798 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043428.1 CDS aceA NC_011080.1 4393830 4395134 D identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346; isocitrate lyase 4393830..4395134 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043429.1 CDS SNSL254_A4521 NC_011080.1 4395138 4395260 D hypothetical protein 4395138..4395260 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043430.1 CDS aceK NC_011080.1 4395236 4396987 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 4395236..4396987 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043431.1 CDS SNSL254_A4523 NC_011080.1 4396951 4397385 R identified by match to protein family HMM PF04266; hypothetical protein complement(4396951..4397385) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043432.1 CDS SNSL254_A4524 NC_011080.1 4397369 4398193 R 'regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase'; IclR family transcriptional regulator complement(4397369..4398193) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043433.1 CDS SNSL254_A4525 NC_011080.1 4398317 4398448 R identified by glimmer; hypothetical protein complement(4398317..4398448) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043434.1 CDS metH NC_011080.1 4398497 4402180 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4398497..4402180 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043435.1 CDS SNSL254_A4527 NC_011080.1 4402447 4404078 D identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; match to protein family HMM TIGR01013; sodium-dependent inorganic phosphate 4402447..4404078 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043436.1 CDS SNSL254_A4528 NC_011080.1 4404168 4404857 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(4404168..4404857) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043437.1 CDS SNSL254_A4529 NC_011080.1 4405065 4405604 D nucleoprotein/polynucleotide-associated enzyme 4405065..4405604 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043438.1 CDS SNSL254_A4530 NC_011080.1 4405651 4406520 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4405651..4406520 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043439.1 CDS SNSL254_A4531 NC_011080.1 4406517 4406789 R hypothetical protein complement(4406517..4406789) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043440.1 CDS SNSL254_A4532 NC_011080.1 4406852 4407610 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family regulatory protein complement(4406852..4407610) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043441.1 CDS SNSL254_A4533 NC_011080.1 4407597 4408460 R identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein complement(4407597..4408460) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043442.1 CDS SNSL254_A4534 NC_011080.1 4408477 4409316 R hypothetical protein complement(4408477..4409316) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043443.1 CDS SNSL254_A4535 NC_011080.1 4409340 4410929 R hypothetical protein complement(4409340..4410929) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043444.1 CDS SNSL254_A4536 NC_011080.1 4411352 4411867 R identified by match to protein family HMM PF02413; tail assembly chaperone gp38 complement(4411352..4411867) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043445.1 CDS SNSL254_A4537 NC_011080.1 4411877 4413358 R identified by match to protein family HMM PF03406; gp19 complement(4411877..4413358) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043446.1 CDS SNSL254_A4538 NC_011080.1 4413361 4413993 R identified by match to protein family HMM PF09684; match to protein family HMM TIGR01634; phage tail protein complement(4413361..4413993) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043447.1 CDS SNSL254_A4539 NC_011080.1 4413986 4415101 R identified by match to protein family HMM PF04865; hypothetical protein complement(4413986..4415101) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043448.1 CDS SNSL254_A4540 NC_011080.1 4415092 4415451 R identified by match to protein family HMM PF04965; baseplate complement(4415092..4415451) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043449.1 CDS SNSL254_A4541 NC_011080.1 4415512 4415634 D identified by glimmer; hypothetical protein 4415512..4415634 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043450.1 CDS SNSL254_A4542 NC_011080.1 4415615 4417153 R hypothetical protein complement(4415615..4417153) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043451.1 CDS SNSL254_A4543 NC_011080.1 4417162 4418091 R identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase complement(4417162..4418091) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043452.1 CDS SNSL254_A4544 NC_011080.1 4418088 4418450 R identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase complement(4418088..4418450) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043453.1 CDS SNSL254_A4545 NC_011080.1 4418526 4418765 R identified by glimmer; hypothetical protein complement(4418526..4418765) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043454.1 CDS SNSL254_A4546 NC_011080.1 4418774 4419496 R identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644; baseplate complement(4418774..4419496) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043455.1 CDS SNSL254_A4547 NC_011080.1 4419506 4420549 R identified by match to protein family HMM PF05954; gp47 complement(4419506..4420549) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043456.1 CDS SNSL254_A4548 NC_011080.1 4420537 4420746 R identified by match to protein family HMM PF05489; phage Tail Protein X complement(4420537..4420746) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043457.1 CDS SNSL254_A4549 NC_011080.1 4420746 4421699 R identified by match to protein family HMM PF06995; methyl-accepting chemotaxis protein complement(4420746..4421699) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043458.1 CDS SNSL254_A4550 NC_011080.1 4421699 4424053 R identified by match to protein family HMM TIGR01760; phage tail protein complement(4421699..4424053) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043459.1 CDS SNSL254_A4551 NC_011080.1 4424150 4424278 R hypothetical protein complement(4424150..4424278) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043460.1 CDS SNSL254_A4552 NC_011080.1 4424238 4424555 R hypothetical protein complement(4424238..4424555) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043461.1 CDS SNSL254_A4553 NC_011080.1 4424607 4425131 R identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611; phage major tail tube protein complement(4424607..4425131) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043462.1 CDS SNSL254_A4554 NC_011080.1 4425131 4426558 R identified by match to protein family HMM PF04984; phage tail sheath protein complement(4425131..4426558) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043463.1 CDS SNSL254_A4555 NC_011080.1 4426548 4426745 R gp12 complement(4426548..4426745) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043464.1 CDS SNSL254_A4556 NC_011080.1 4426742 4427197 R identified by match to protein family HMM PF09646; hypothetical protein complement(4426742..4427197) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043465.1 CDS SNSL254_A4557 NC_011080.1 4427357 4427671 R gp54 complement(4427357..4427671) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043466.1 CDS SNSL254_A4558 NC_011080.1 4427684 4428289 R identified by match to protein family HMM PF01464; endolysin complement(4427684..4428289) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043467.1 CDS SNSL254_A4559 NC_011080.1 4428292 4428579 R gp51 complement(4428292..4428579) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043468.1 CDS SNSL254_A4560 NC_011080.1 4428806 4428937 D identified by glimmer; hypothetical protein 4428806..4428937 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043469.1 CDS SNSL254_A4561 NC_011080.1 4429157 4429504 D identified by match to protein family HMM PF08765; DNA-binding protein RdgB 4429157..4429504 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043470.1 CDS lysC NC_011080.1 4429635 4430984 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase complement(4429635..4430984) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043471.1 CDS pgi NC_011080.1 4431329 4432978 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4431329..4432978 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043472.1 CDS SNSL254_A4564 NC_011080.1 4433419 4433664 D hypothetical protein 4433419..4433664 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043473.1 CDS SNSL254_A4565 NC_011080.1 4433728 4434366 D hypothetical protein 4433728..4434366 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043474.1 CDS SNSL254_A4566 NC_011080.1 4434363 4435100 D identified by match to protein family HMM PF06251; hypothetical protein 4434363..4435100 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043475.1 CDS SNSL254_A4567 NC_011080.1 4435100 4437196 D identified by match to protein family HMM PF06082; lipoprotein 4435100..4437196 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043476.1 CDS SNSL254_A4568 NC_011080.1 4437339 4437749 D identified by match to protein family HMM PF06146; phosphate-starvation-inducible protein PsiE 4437339..4437749 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043477.1 CDS malG NC_011080.1 4437915 4438805 R with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease complement(4437915..4438805) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043478.1 CDS malF NC_011080.1 4438820 4440364 R with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein complement(4438820..4440364) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043479.1 CDS SNSL254_A4570 NC_011080.1 4440363 4440503 D identified by glimmer; hypothetical protein 4440363..4440503 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043480.1 CDS malE NC_011080.1 4440496 4441686 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein complement(4440496..4441686) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043481.1 CDS malK NC_011080.1 4442048 4443157 D with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4442048..4443157 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043482.1 CDS lamB NC_011080.1 4443246 4444604 D porin involved in the transport of maltose and maltodextrins; maltoporin 4443246..4444604 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043483.1 CDS malM NC_011080.1 4444768 4445685 D identified by match to protein family HMM PF07148; maltose regulon periplasmic protein 4444768..4445685 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043484.1 CDS ubiC NC_011080.1 4445866 4446363 D catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4445866..4446363 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043485.1 CDS ubiA NC_011080.1 4446377 4447249 D 'catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway'; 4-hydroxybenzoate octaprenyltransferase 4446377..4447249 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043486.1 CDS SNSL254_A4578 NC_011080.1 4447348 4449768 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4447348..4449768) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043487.1 CDS dgkA NC_011080.1 4449939 4450307 D identified by match to protein family HMM PF01219; diacylglycerol kinase 4449939..4450307 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043488.1 CDS lexA NC_011080.1 4450416 4451024 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4450416..4451024 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043489.1 CDS SNSL254_A4581 NC_011080.1 4451203 4452528 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; DNA-damage-inducible SOS response protein 4451203..4452528 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043490.1 CDS SNSL254_A4582 NC_011080.1 4452510 4452638 D hypothetical protein 4452510..4452638 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043491.1 CDS SNSL254_A4583 NC_011080.1 4452657 4452869 D unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4452657..4452869 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043492.1 CDS SNSL254_A4584 NC_011080.1 4452969 4453484 R 'Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB'; zinc uptake transcriptional repressor complement(4452969..4453484) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043493.1 CDS SNSL254_A4585 NC_011080.1 4453731 4455041 D conjugative transfer protein 4453731..4455041 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043494.1 CDS SNSL254_A4586 NC_011080.1 4455129 4456127 D identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 4455129..4456127 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043495.1 CDS SNSL254_A4588 NC_011080.1 4456711 4457694 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; quinone oxidoreductase complement(4456711..4457694) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043496.1 CDS dnaB NC_011080.1 4457759 4459174 D unwinds double stranded DNA; replicative DNA helicase 4457759..4459174 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043497.1 CDS alr NC_011080.1 4459206 4460285 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4459206..4460285 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043498.1 CDS SNSL254_A4591 NC_011080.1 4460256 4460387 R identified by glimmer; hypothetical protein complement(4460256..4460387) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043499.1 CDS tyrB NC_011080.1 4460471 4461664 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4460471..4461664 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043500.1 CDS aphA NC_011080.1 4461851 4462564 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4461851..4462564 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043501.1 CDS SNSL254_A4594 NC_011080.1 4462693 4463109 D identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 4462693..4463109 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043502.1 CDS SNSL254_A4595 NC_011080.1 4463112 4463468 D identified by match to protein family HMM PF04237; hypothetical protein 4463112..4463468 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043503.1 CDS SNSL254_A4596 NC_011080.1 4463469 4463807 R hypothetical protein complement(4463469..4463807) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043504.1 CDS SNSL254_A4597 NC_011080.1 4463794 4464237 R hypothetical protein complement(4463794..4464237) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043505.1 CDS uvrA NC_011080.1 4464381 4467206 R 'The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate'; excinuclease ABC subunit A complement(4464381..4467206) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043506.1 CDS ssb2 NC_011080.1 4467454 4467984 D binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4467454..4467984 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043507.1 CDS SNSL254_A4600 NC_011080.1 4468194 4468328 D identified by glimmer; hypothetical protein 4468194..4468328 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043508.1 CDS SNSL254_A4601 NC_011080.1 4468375 4468515 D identified by glimmer; hypothetical protein 4468375..4468515 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043509.1 CDS SNSL254_A4602 NC_011080.1 4469025 4469657 D hypothetical protein 4469025..4469657 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043510.1 CDS SNSL254_A4603 NC_011080.1 4469654 4471042 D integral membrane protein 4469654..4471042 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043511.1 CDS SNSL254_A4604 NC_011080.1 4471425 4472351 D identified by match to protein family HMM PF02321; type-I secretion protein 4471425..4472351 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043512.1 CDS SNSL254_A4605 NC_011080.1 4472375 4473625 D hypothetical protein 4472375..4473625 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043513.1 CDS SNSL254_A4606 NC_011080.1 4473642 4490321 D hypothetical protein 4473642..4490321 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043514.1 CDS SNSL254_A4607 NC_011080.1 4490361 4492427 D identified by match to protein family HMM PF00005; bacteriocin/lantibiotic ABC transporter 4490361..4492427 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_007419098.1 CDS SNSL254_A4608 NC_011080.1 4492705 4492986 R hypothetical protein complement(4492705..4492986) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043515.1 CDS SNSL254_A4609 NC_011080.1 4493549 4495150 D identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 4493549..4495150 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043516.1 CDS SNSL254_A4610 NC_011080.1 4495138 4495461 R regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS complement(4495138..4495461) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043517.1 CDS soxR NC_011080.1 4495548 4496006 D identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR01950; redox-sensitive transcriptional activator SoxR 4495548..4496006 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043518.1 CDS SNSL254_A4612 NC_011080.1 4496299 4496967 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 4496299..4496967 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043519.1 CDS SNSL254_A4613 NC_011080.1 4497115 4497237 R identified by glimmer; hypothetical protein complement(4497115..4497237) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043520.1 CDS SNSL254_A4614 NC_011080.1 4497314 4498663 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; inorganic anion transporter, sulfate permease (SulP) family 4497314..4498663 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043521.1 CDS SNSL254_A4615 NC_011080.1 4498768 4500459 D identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831; Na+/H+ antiporter 4498768..4500459 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043522.1 CDS SNSL254_A4616 NC_011080.1 4500554 4501441 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family regulatory protein complement(4500554..4501441) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043523.1 CDS SNSL254_A4617 NC_011080.1 4501545 4501955 D identified by match to protein family HMM PF03788; LrgA family protein 4501545..4501955 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043524.1 CDS SNSL254_A4618 NC_011080.1 4501948 4502637 D identified by match to protein family HMM PF04172; LrgB family protein 4501948..4502637 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043525.1 CDS actP NC_011080.1 4502676 4504325 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(4502676..4504325) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043526.1 CDS SNSL254_A4620 NC_011080.1 4504322 4504636 R identified by match to protein family HMM PF04341; hypothetical protein complement(4504322..4504636) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043527.1 CDS acsA NC_011080.1 4504882 4506840 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(4504882..4506840) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043528.1 CDS nrfA NC_011080.1 4507272 4508708 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4507272..4508708 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043529.1 CDS nrfB NC_011080.1 4508753 4509319 D 'part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia'; cytochrome c nitrite reductase pentaheme subunit 4508753..4509319 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043530.1 CDS nrfC NC_011080.1 4509316 4509987 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; match to protein family HMM TIGR03149; cytochrome c nitrite reductase, Fe-S protein 4509316..4509987 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043531.1 CDS nrfD NC_011080.1 4509984 4510940 D identified by match to protein family HMM PF03916; match to protein family HMM TIGR03148; cytochrome c nitrite reductase, NrfD subunit 4509984..4510940 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043532.1 CDS SNSL254_A4626 NC_011080.1 4510933 4513155 D with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; heme lyase subunit NrfE 4510933..4513155 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043533.1 CDS SNSL254_A4627 NC_011080.1 4513152 4513772 D identified by match to protein family HMM PF07719; formate-dependent nitrite reductase complex subunit NrfG 4513152..4513772 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043534.1 CDS gltP NC_011080.1 4514117 4515427 D 'carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system'; glutamate/aspartate:proton symporter 4514117..4515427 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043535.1 CDS SNSL254_A4629 NC_011080.1 4515585 4516253 R identified by match to protein family HMM PF08238; hypothetical protein complement(4515585..4516253) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043536.1 CDS lpxO NC_011080.1 4518953 4519861 R identified by match to protein family HMM PF05118; membrane-bound beta-hydroxylase complement(4518953..4519861) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043537.1 CDS SNSL254_A4633 NC_011080.1 4520119 4520553 R PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase complement(4520119..4520553) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043538.1 CDS SNSL254_A4634 NC_011080.1 4520705 4521148 R identified by match to protein family HMM PF00903; match to protein family HMM PF06983; hypothetical protein complement(4520705..4521148) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043539.1 CDS phnA NC_011080.1 4521268 4521603 R identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; hypothetical protein complement(4521268..4521603) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043540.1 CDS SNSL254_A4636 NC_011080.1 4522071 4523573 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM PF08946; match to protein family HMM TIGR00883; proline/glycine betaine transporter 4522071..4523573 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043541.1 CDS SNSL254_A4637 NC_011080.1 4523740 4524819 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein BasS/PmrB complement(4523740..4524819) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043542.1 CDS SNSL254_A4638 NC_011080.1 4524820 4525488 R response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR complement(4524820..4525488) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043543.1 CDS SNSL254_A4639 NC_011080.1 4525485 4527128 R with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; cell division protein complement(4525485..4527128) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043544.1 CDS SNSL254_A4640 NC_011080.1 4527262 4528599 R identified by match to protein family HMM PF00324; arginine:agmatin antiporter complement(4527262..4528599) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043545.1 CDS SNSL254_A4641 NC_011080.1 4528739 4529500 R identified by match to protein family HMM PF00165; porin complement(4528739..4529500) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043546.1 CDS adiA NC_011080.1 4529798 4532068 R identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; biodegradative arginine decarboxylase complement(4529798..4532068) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043547.1 CDS SNSL254_A4643 NC_011080.1 4532298 4533188 R identified by match to protein family HMM PF00165; DNA-binding transcriptional regulator MelR complement(4532298..4533188) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043548.1 CDS SNSL254_A4644 NC_011080.1 4533499 4534854 D identified by match to protein family HMM PF02056; alpha-galactosidase 4533499..4534854 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043549.1 CDS SNSL254_A4645 NC_011080.1 4534938 4536368 D identified by match to protein family HMM TIGR00792; melibiose:sodium symporter 4534938..4536368 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043550.1 CDS fumB NC_011080.1 4536466 4538112 R identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic complement(4536466..4538112) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043551.1 CDS dcuB NC_011080.1 4538208 4539548 R 'functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters'; anaerobic C4-dicarboxylate transporter complement(4538208..4539548) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043552.1 CDS SNSL254_A4648 NC_011080.1 4539695 4539961 R hypothetical protein complement(4539695..4539961) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043553.1 CDS SNSL254_A4649 NC_011080.1 4540278 4540997 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR complement(4540278..4540997) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043554.1 CDS SNSL254_A4650 NC_011080.1 4540994 4542625 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS complement(4540994..4542625) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043555.1 CDS SNSL254_A4651 NC_011080.1 4543000 4545429 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 4543000..4545429 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043556.1 CDS dmsB NC_011080.1 4545443 4546069 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B 4545443..4546069 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043557.1 CDS dmsC NC_011080.1 4546062 4546835 D identified by match to protein family HMM PF04976; dmso reductase anchor subunit 4546062..4546835 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043558.1 CDS SNSL254_A4654 NC_011080.1 4546910 4547503 D identified by match to protein family HMM PF06192; oxidoreductase component 4546910..4547503 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043559.1 CDS SNSL254_A4655 NC_011080.1 4547587 4548987 R identified by match to protein family HMM PF09362; hypothetical protein complement(4547587..4548987) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043561.1 CDS SNSL254_A4657 NC_011080.1 4549291 4550196 D identified by match to protein family HMM PF06977; hypothetical protein 4549291..4550196 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043563.1 CDS SNSL254_A4660 NC_011080.1 4551032 4551304 R identified by match to protein family HMM PF00196; GerE family regulatory protein complement(4551032..4551304) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043564.1 CDS SNSL254_A4661 NC_011080.1 4551316 4552191 R identified by match to protein family HMM PF00165; araC family transcriptional regulator complement(4551316..4552191) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043565.1 CDS SNSL254_A4662 NC_011080.1 4552328 4552453 D identified by glimmer; hypothetical protein 4552328..4552453 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043566.1 CDS SNSL254_A4663 NC_011080.1 4552994 4553287 D identified by match to protein family HMM PF08681; hypothetical protein 4552994..4553287 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043567.1 CDS SNSL254_A4664 NC_011080.1 4553284 4553775 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 4553284..4553775 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043568.1 CDS SNSL254_A4665 NC_011080.1 4553978 4554445 D integrase, catalytic region 4553978..4554445 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043569.1 CDS SNSL254_A4667 NC_011080.1 4555391 4555531 R identified by glimmer; hypothetical protein complement(4555391..4555531) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043570.1 CDS SNSL254_A4668 NC_011080.1 4555556 4555861 D identified by match to protein family HMM PF03333; repressor protein 4555556..4555861 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043571.1 CDS SNSL254_A4669 NC_011080.1 4556063 4556893 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; periplasmic chaperone 4556063..4556893 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043572.1 CDS SNSL254_A4672 NC_011080.1 4559897 4560148 D invasin protein 4559897..4560148 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043573.1 CDS SNSL254_A4673 NC_011080.1 4560227 4560355 D identified by glimmer; hypothetical protein 4560227..4560355 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043574.1 CDS SNSL254_A4674 NC_011080.1 4560865 4561332 D identified by glimmer; hypothetical protein 4560865..4561332 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043575.1 CDS SNSL254_A4675 NC_011080.1 4561513 4562172 D identified by match to protein family HMM PF01323; thiol:disulfide interchange protein DsbA 4561513..4562172 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043576.1 CDS SNSL254_A4676 NC_011080.1 4562556 4562681 R identified by glimmer; hypothetical protein complement(4562556..4562681) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043577.1 CDS SNSL254_A4677 NC_011080.1 4562872 4563084 D identified by match to protein family HMM PF04703; hypothetical protein 4562872..4563084 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043578.1 CDS SNSL254_A4678 NC_011080.1 4563360 4563506 D identified by glimmer; hypothetical protein 4563360..4563506 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043579.1 CDS SNSL254_A4679 NC_011080.1 4563532 4564380 D identified by match to protein family HMM PF06977; hypothetical protein 4563532..4564380 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043580.1 CDS SNSL254_A4680 NC_011080.1 4564525 4565277 R identified by match to protein family HMM PF01569; acid phosphatase complement(4564525..4565277) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043581.1 CDS SNSL254_A4681 NC_011080.1 4565320 4565454 R ail and OmpX Homolog complement(4565320..4565454) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043582.1 CDS SNSL254_A4683 NC_011080.1 4566179 4566754 R identified by match to protein family HMM PF00440; transcriptional regulator complement(4566179..4566754) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043583.1 CDS dipZ NC_011080.1 4566791 4568494 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(4566791..4568494) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043584.1 CDS cutA NC_011080.1 4568470 4568817 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA complement(4568470..4568817) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043585.1 CDS dcuA NC_011080.1 4568938 4570239 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(4568938..4570239) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043586.1 CDS aspA NC_011080.1 4570354 4571790 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(4570354..4571790) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043587.1 CDS fxsA NC_011080.1 4572131 4572607 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4572131..4572607 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043588.1 CDS SNSL254_A4689 NC_011080.1 4572666 4573928 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; hypothetical protein complement(4572666..4573928) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043589.1 CDS groES NC_011080.1 4574183 4574476 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4574183..4574476 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043590.1 CDS groEL NC_011080.1 4574520 4576166 D '60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth'; molecular chaperone GroEL 4574520..4576166 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043591.1 CDS SNSL254_A4692 NC_011080.1 4576417 4576770 D lipoprotein 4576417..4576770 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043592.1 CDS SNSL254_A4693 NC_011080.1 4576818 4577675 R hypothetical protein complement(4576818..4577675) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043593.1 CDS SNSL254_A4694 NC_011080.1 4577957 4578985 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; KamA family protein complement(4577957..4578985) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043594.1 CDS efp NC_011080.1 4579026 4579592 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4579026..4579592 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043595.1 CDS SNSL254_A4696 NC_011080.1 4579611 4579787 D identified by match to protein family HMM PF08085; entericidin A 4579611..4579787 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083662.1 CDS SNSL254_A4697 NC_011080.1 4580072 4580659 R transcriptional regulator complement(4580072..4580659) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083663.1 CDS SNSL254_A4699 NC_011080.1 4580916 4581233 D quaternary ammonium compound-resistance protein SugE 4580916..4581233 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043597.1 CDS SNSL254_A4700 NC_011080.1 4581250 4581783 R lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc complement(4581250..4581783) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043598.1 CDS SNSL254_A4701 NC_011080.1 4581895 4582254 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(4581895..4582254) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043599.1 CDS frdC NC_011080.1 4582265 4582660 R 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase subunit C complement(4582265..4582660) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043600.1 CDS frdB NC_011080.1 4582671 4583405 R 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase iron-sulfur subunit complement(4582671..4583405) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043601.1 CDS frdA NC_011080.1 4583398 4585188 R 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase flavoprotein subunit complement(4583398..4585188) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043602.1 CDS SNSL254_A4705 NC_011080.1 4585511 4586488 D lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4585511..4586488 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043603.1 CDS SNSL254_A4706 NC_011080.1 4586714 4588216 D identified by match to protein family HMM PF00324; inner membrane transporter YjeM 4586714..4588216 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043604.1 CDS SNSL254_A4707 NC_011080.1 4588268 4588582 D hypothetical protein 4588268..4588582 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043605.1 CDS SNSL254_A4708 NC_011080.1 4588649 4591975 R identified by match to protein family HMM PF00924; hypothetical protein complement(4588649..4591975) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043606.1 CDS psd NC_011080.1 4591994 4592962 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(4591994..4592962) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043607.1 CDS rsgA NC_011080.1 4593054 4594106 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(4593054..4594106) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043608.1 CDS SNSL254_A4711 NC_011080.1 4594213 4594758 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4594213..4594758 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043609.1 CDS SNSL254_A4712 NC_011080.1 4594820 4595560 R identified by match to protein family HMM PF00497; arginine-binding periplasmic protein 2 complement(4594820..4595560) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043610.1 CDS SNSL254_A4717 NC_011080.1 4596406 4597560 R identified by match to protein family HMM PF08331; match to protein family HMM TIGR00276; iron-sulfur cluster binding protein complement(4596406..4597560) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043611.1 CDS SNSL254_A4716 NC_011080.1 4597547 4599091 D identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein 4597547..4599091 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043612.1 CDS SNSL254_A4718 NC_011080.1 4599063 4599524 D possibly involved in cell wall synthesis; ATPase 4599063..4599524 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043613.1 CDS SNSL254_A4719 NC_011080.1 4599541 4600860 D identified by match to protein family HMM PF01520; N-acetylmuramoyl-l-alanine amidase II 4599541..4600860 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043614.1 CDS mutL NC_011080.1 4600870 4602726 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4600870..4602726 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043615.1 CDS miaA NC_011080.1 4602719 4603669 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4602719..4603669 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043616.1 CDS hfq NC_011080.1 4603752 4604060 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4603752..4604060 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043617.1 CDS hflX NC_011080.1 4604132 4605412 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4604132..4605412 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043618.1 CDS hflK NC_011080.1 4605627 4606886 D with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4605627..4606886 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043619.1 CDS hflC NC_011080.1 4606889 4607893 D with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4606889..4607893 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043620.1 CDS SNSL254_A4726 NC_011080.1 4607972 4608169 D hypothetical protein 4607972..4608169 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043621.1 CDS purA NC_011080.1 4608272 4609570 D 'catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis'; adenylosuccinate synthetase 4608272..4609570 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043622.2 CDS nsrR NC_011080.1 4609777 4610202 D negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4609777..4610202 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043623.1 CDS rnr NC_011080.1 4610240 4612678 D '3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs'; exoribonuclease R 4610240..4612678 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043624.1 CDS SNSL254_A4730 NC_011080.1 4612769 4613500 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4612769..4613500 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043625.1 CDS SNSL254_A4731 NC_011080.1 4613633 4614037 D hypothetical protein 4613633..4614037 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043626.1 CDS SNSL254_A4732 NC_011080.1 4614052 4614750 D identified by match to protein family HMM PF04012; PspA/IM30 family protein 4614052..4614750 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083664.1 CDS SNSL254_A4733 NC_011080.1 4614750 4615820 D potassium channel protein 4614750..4615820 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043627.1 CDS SNSL254_A4734 NC_011080.1 4615817 4616476 D hypothetical protein 4615817..4616476 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043628.1 CDS SNSL254_A4735 NC_011080.1 4616494 4616892 D identified by match to protein family HMM PF03994; hypothetical protein 4616494..4616892 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043629.1 CDS SNSL254_A4736 NC_011080.1 4616902 4617540 D identified by match to protein family HMM PF06693; hypothetical protein 4616902..4617540 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043630.1 CDS SNSL254_A4737 NC_011080.1 4617543 4618706 D identified by match to protein family HMM PF03738; glutathionylspermidine synthase 4617543..4618706 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043631.1 CDS SNSL254_A4738 NC_011080.1 4618791 4620413 D catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4618791..4620413 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043632.1 CDS SNSL254_A4739 NC_011080.1 4620458 4620733 R identified by match to protein family HMM PF07338; hypothetical protein complement(4620458..4620733) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043633.1 CDS SNSL254_A4740 NC_011080.1 4620864 4621166 R 'in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility'; biofilm stress and motility protein A complement(4620864..4621166) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043634.1 CDS SNSL254_A4741 NC_011080.1 4621377 4622126 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4621377..4622126 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043635.1 CDS SNSL254_A4742 NC_011080.1 4622123 4622878 R negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR complement(4622123..4622878) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043636.1 CDS SNSL254_A4743 NC_011080.1 4622983 4624047 R L-ascorbate 6-phosphate lactonase complement(4622983..4624047) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043637.1 CDS ulaA NC_011080.1 4624410 4625807 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4624410..4625807 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043638.1 CDS ulaB NC_011080.1 4625823 4626128 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4625823..4626128 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043639.1 CDS ulaC NC_011080.1 4626138 4626602 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4626138..4626602 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043640.1 CDS ulaD NC_011080.1 4626616 4627266 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4626616..4627266 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043641.1 CDS ulaE NC_011080.1 4627276 4628130 D UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4627276..4628130 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043642.1 CDS sgaE NC_011080.1 4628130 4628816 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4628130..4628816 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043643.1 CDS SNSL254_A4750 NC_011080.1 4628945 4629220 R identified by match to protein family HMM PF07338; hypothetical protein complement(4628945..4629220) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043644.1 CDS rpsF NC_011080.1 4629691 4630086 D 'binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21'; 30S ribosomal protein S6 4629691..4630086 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043645.1 CDS priB NC_011080.1 4630093 4630407 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4630093..4630407 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043646.1 CDS rpsR NC_011080.1 4630412 4630639 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4630412..4630639 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043647.1 CDS rplI NC_011080.1 4630681 4631130 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4630681..4631130 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043648.1 CDS SNSL254_A4755 NC_011080.1 4631278 4632204 D identified by match to protein family HMM PF00892; hypothetical protein 4631278..4632204 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043649.1 CDS SNSL254_A4756 NC_011080.1 4632254 4632889 R identified by match to protein family HMM PF04225; match to protein family HMM PF08525; opacity-associated protein A complement(4632254..4632889) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043650.1 CDS SNSL254_A4757 NC_011080.1 4633109 4633729 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4633109..4633729 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043651.1 CDS SNSL254_A4758 NC_011080.1 4633741 4633866 D identified by glimmer; hypothetical protein 4633741..4633866 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043652.1 CDS SNSL254_A4759 NC_011080.1 4634024 4635427 D 'involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine'; D-alanine/D-serine/glycine permease 4634024..4635427 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043653.1 CDS SNSL254_A4760 NC_011080.1 4635765 4636904 D hypothetical protein 4635765..4636904 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043654.1 CDS SNSL254_A4761 NC_011080.1 4636919 4638307 D hypothetical protein 4636919..4638307 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043655.1 CDS SNSL254_A4762 NC_011080.1 4638374 4639036 R Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein complement(4638374..4639036) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043656.1 CDS SNSL254_A4763 NC_011080.1 4639139 4640104 R identified by match to protein family HMM PF00892; hypothetical protein complement(4639139..4640104) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043657.1 CDS SNSL254_A4764 NC_011080.1 4640185 4641033 R identified by match to protein family HMM PF01073; match to protein family HMM PF02254; match to protein family HMM PF05368; match to protein family HMM PF07993; hypothetical protein complement(4640185..4641033) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_008083665.1 CDS SNSL254_A4765 NC_011080.1 4641121 4641507 D transcriptional regulator 4641121..4641507 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043658.1 CDS cpdB NC_011080.1 4641565 4643508 R 'periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate'; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein complement(4641565..4643508) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043659.1 CDS SNSL254_A4767 NC_011080.1 4643521 4643742 R identified by glimmer; hypothetical protein complement(4643521..4643742) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043660.1 CDS cysQ NC_011080.1 4643776 4644516 D 'catalyzes the formation of AMP from adenosine-3',5'-bisphosphate'; adenosine-3'(2'),5'-bisphosphate nucleotidase 4643776..4644516 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043661.1 CDS SNSL254_A4769 NC_011080.1 4644506 4645063 R identified by match to protein family HMM PF09695; match to protein family HMM TIGR01626; hypothetical protein complement(4644506..4645063) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043662.1 CDS SNSL254_A4770 NC_011080.1 4645390 4645596 D identified by match to protein family HMM PF06526; hypothetical protein 4645390..4645596 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043663.1 CDS SNSL254_A4771 NC_011080.1 4645681 4647024 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; transporter complement(4645681..4647024) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043664.1 CDS msrA NC_011080.1 4647207 4647845 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4647207..4647845) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043666.1 CDS SNSL254_A4774 NC_011080.1 4648058 4649791 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; outer membrane protein OMP85 family 4648058..4649791 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043667.1 CDS SNSL254_A4775 NC_011080.1 4649788 4653567 D identified by match to protein family HMM PF04357; hypothetical protein 4649788..4653567 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043668.1 CDS SNSL254_A4776 NC_011080.1 4653570 4653914 D identified by match to protein family HMM PF06094; hypothetical protein 4653570..4653914 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043669.1 CDS SNSL254_A4777 NC_011080.1 4653968 4655176 R identified by match to protein family HMM PF07690; sugar transporter complement(4653968..4655176) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043670.1 CDS SNSL254_A4778 NC_011080.1 4655173 4656336 R identified by match to protein family HMM PF01979; metallo-dependent hydrolase complement(4655173..4656336) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043671.1 CDS ppa NC_011080.1 4656746 4657276 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(4656746..4657276) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043672.1 CDS fbp NC_011080.1 4657503 4658501 R 'catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate'; fructose-1,6-bisphosphatase complement(4657503..4658501) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043673.1 CDS mpl NC_011080.1 4658676 4660049 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4658676..4660049 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043674.1 CDS yjgA NC_011080.1 4660156 4660707 R identified by match to protein family HMM PF04751; hypothetical protein complement(4660156..4660707) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043675.1 CDS pmbA NC_011080.1 4660815 4662155 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4660815..4662155 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043676.1 CDS SNSL254_A4784 NC_011080.1 4662254 4662640 D identified by match to protein family HMM PF07361; soluble cytochrome b562 4662254..4662640 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043677.1 CDS SNSL254_A4785 NC_011080.1 4662644 4662799 D hypothetical protein 4662644..4662799 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043678.1 CDS SNSL254_A4786 NC_011080.1 4662937 4663266 D identified by match to protein family HMM PF00874; match to protein family HMM TIGR03582; PRD domain-containing protein 4662937..4663266 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043679.1 CDS SNSL254_A4787 NC_011080.1 4663277 4663639 D identified by match to protein family HMM TIGR03577; hypothetical protein 4663277..4663639 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043680.1 CDS SNSL254_A4788 NC_011080.1 4663639 4663941 D identified by match to protein family HMM TIGR03578; hypothetical protein 4663639..4663941 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043681.1 CDS SNSL254_A4789 NC_011080.1 4663964 4664740 D identified by match to protein family HMM TIGR03580; hypothetical protein 4663964..4664740 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043682.1 CDS SNSL254_A4790 NC_011080.1 4664752 4665396 D identified by match to protein family HMM TIGR03579; hypothetical protein 4664752..4665396 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043683.1 CDS SNSL254_A4791 NC_011080.1 4665455 4666588 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4665455..4666588 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043684.1 CDS SNSL254_A4792 NC_011080.1 4666572 4667690 D identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437; hypothetical protein 4666572..4667690 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043685.1 CDS SNSL254_A4793 NC_011080.1 4667687 4668427 D identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581; hypothetical protein 4667687..4668427 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043686.1 CDS SNSL254_A4794 NC_011080.1 4668444 4670357 D identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; transcriptional antiterminator BglG 4668444..4670357 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043687.1 CDS SNSL254_A4795 NC_011080.1 4670435 4670677 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4670435..4670677 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043688.1 CDS SNSL254_A4796 NC_011080.1 4670667 4670951 D identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; stability protein StbE 4670667..4670951 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043689.1 CDS nrdG NC_011080.1 4670955 4671419 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(4670955..4671419) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043690.1 CDS nrdD NC_011080.1 4671636 4673774 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(4671636..4673774) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043691.1 CDS SNSL254_A4799 NC_011080.1 4673979 4674149 D hypothetical protein 4673979..4674149 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043692.1 CDS treC NC_011080.1 4674183 4675835 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; trehalose-6-phosphate hydrolase complement(4674183..4675835) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043693.1 CDS treB NC_011080.1 4675885 4677303 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunit IIBC complement(4675885..4677303) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043694.1 CDS treR NC_011080.1 4677441 4678388 R regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor complement(4677441..4678388) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043696.1 CDS mgtA NC_011080.1 4678724 4681480 D P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4678724..4681480 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043697.1 CDS SNSL254_A4805 NC_011080.1 4681569 4681955 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP complement(4681569..4681955) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043698.1 CDS pyrI NC_011080.1 4682032 4682493 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(4682032..4682493) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043699.1 CDS pyrB NC_011080.1 4682506 4683441 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(4682506..4683441) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043700.1 CDS SNSL254_A4808 NC_011080.1 4683669 4684157 R identified by match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor ArgR complement(4683669..4684157) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043701.1 CDS SNSL254_A4809 NC_011080.1 4684154 4684270 R identified by glimmer; hypothetical protein complement(4684154..4684270) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043702.1 CDS SNSL254_A4810 NC_011080.1 4684344 4685747 R identified by match to protein family HMM PF03606; C4-dicarboxylate anaerobic carrier complement(4684344..4685747) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043703.1 CDS argF NC_011080.1 4685803 4686807 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(4685803..4686807) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043704.1 CDS SNSL254_A4812 NC_011080.1 4686807 4686944 R hypothetical protein complement(4686807..4686944) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043705.1 CDS arcC NC_011080.1 4686919 4687851 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(4686919..4687851) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043706.1 CDS arcA NC_011080.1 4687862 4689082 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(4687862..4689082) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043707.1 CDS SNSL254_A4815 NC_011080.1 4689183 4689374 D hypothetical protein 4689183..4689374 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043708.1 CDS SNSL254_A4816 NC_011080.1 4689758 4690210 D identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 4689758..4690210 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043709.1 CDS argF NC_011080.1 4690284 4691288 R 'catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.'; ornithine carbamoyltransferase subunit I complement(4690284..4691288) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043710.1 CDS SNSL254_A4818 NC_011080.1 4691454 4691870 D identified by match to protein family HMM PF06877; hypothetical protein 4691454..4691870 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043711.1 CDS SNSL254_A4819 NC_011080.1 4691929 4692693 D identified by match to protein family HMM PF06175; tRNA-(ms[2]io[6]A)-hydroxylase 4691929..4692693 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043712.1 CDS SNSL254_A4821 NC_011080.1 4692927 4693415 R hypothetical protein complement(4692927..4693415) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043713.1 CDS SNSL254_A4822 NC_011080.1 4693522 4694025 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(4693522..4694025) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043714.1 CDS SNSL254_A4823 NC_011080.1 4694220 4695407 D identified by match to protein family HMM PF05987; hypothetical protein 4694220..4695407 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043715.1 CDS valS NC_011080.1 4695549 4698404 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(4695549..4698404) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043716.1 CDS holC NC_011080.1 4698404 4698847 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(4698404..4698847) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043717.1 CDS pepA NC_011080.1 4698984 4700495 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(4698984..4700495) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043718.1 CDS SNSL254_A4827 NC_011080.1 4700890 4701990 D identified by match to protein family HMM PF03739; permease 4700890..4701990 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043719.1 CDS SNSL254_A4828 NC_011080.1 4701990 4703072 D identified by match to protein family HMM PF03739; hypothetical protein 4701990..4703072 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043720.1 CDS SNSL254_A4829 NC_011080.1 4703266 4704264 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator IdnR complement(4703266..4704264) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043721.1 CDS SNSL254_A4830 NC_011080.1 4704328 4705719 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; gluconate:H+ symporter (hypothetical protein) family transporter complement(4704328..4705719) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043722.1 CDS SNSL254_A4831 NC_011080.1 4705709 4706473 R 'Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate'; gluconate 5-dehydrogenase complement(4705709..4706473) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043723.1 CDS SNSL254_A4832 NC_011080.1 4706498 4707529 R NAD-binding; L-idonate 5-dehydrogenase complement(4706498..4707529) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043724.1 CDS idnK NC_011080.1 4707746 4708276 D identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313; D-gluconate kinase 4707746..4708276 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043725.1 CDS SNSL254_A4834 NC_011080.1 4708304 4709323 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; hypothetical protein complement(4708304..4709323) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043726.1 CDS SNSL254_A4836 NC_011080.1 4709793 4711058 D identified by match to protein family HMM PF00589; integrase 4709793..4711058 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043727.1 CDS SNSL254_A4837 NC_011080.1 4711108 4713657 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; dead/deah box helicase domain-containing protein complement(4711108..4713657) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043728.1 CDS SNSL254_A4838 NC_011080.1 4713641 4714678 R hypothetical protein complement(4713641..4714678) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043729.1 CDS SNSL254_A4839 NC_011080.1 4715109 4715231 R Ogr family transcription activator complement(4715109..4715231) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043730.1 CDS SNSL254_A4840 NC_011080.1 4715383 4715937 R encoded in CP-933I; identified by match to protein family HMM PF07455; polarity suppression protein complement(4715383..4715937) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043731.1 CDS SNSL254_A4841 NC_011080.1 4715934 4716686 R capsid morphogenesis protein encoded in CP-933I complement(4715934..4716686) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043732.1 CDS SNSL254_A4842 NC_011080.1 4717599 4717859 D identified by match to protein family HMM PF05930; phage transcriptional regulator, AlpA 4717599..4717859 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043733.1 CDS SNSL254_A4843 NC_011080.1 4717908 4718033 R identified by glimmer; hypothetical protein complement(4717908..4718033) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043734.1 CDS SNSL254_A4844 NC_011080.1 4718213 4718404 D phage immunity repressor protein 4718213..4718404 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043735.1 CDS SNSL254_A4845 NC_011080.1 4718404 4718625 D hypothetical protein 4718404..4718625 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043736.1 CDS SNSL254_A4846 NC_011080.1 4718625 4718948 D hypothetical protein 4718625..4718948 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043737.1 CDS SNSL254_A4847 NC_011080.1 4718963 4721293 D identified by match to protein family HMM PF03288; match to protein family HMM PF08273; match to protein family HMM PF08706; match to protein family HMM TIGR01613; bacteriophage P4 DNA primase 4718963..4721293 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043738.1 CDS SNSL254_A4850 NC_011080.1 4723238 4723954 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(4723238..4723954) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043739.1 CDS SNSL254_A4851 NC_011080.1 4724052 4724183 D identified by glimmer; hypothetical protein 4724052..4724183 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043740.1 CDS SNSL254_A4852 NC_011080.1 4724514 4726139 R identified by match to protein family HMM PF08241; match to protein family HMM PF08242; SAM-dependent methyltransferase complement(4724514..4726139) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043741.1 CDS SNSL254_A4853 NC_011080.1 4726150 4726407 R hypothetical protein complement(4726150..4726407) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043743.1 CDS SNSL254_A4855 NC_011080.1 4726894 4727502 D identified by match to protein family HMM PF06353; hypothetical protein 4726894..4727502 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043744.1 CDS SNSL254_A4856 NC_011080.1 4727854 4728765 D hypothetical protein 4727854..4728765 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043747.1 CDS SNSL254_A4859 NC_011080.1 4729063 4729431 D identified by match to protein family HMM PF03625; hypothetical protein 4729063..4729431 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043748.1 CDS SNSL254_A4860 NC_011080.1 4729428 4730102 R identified by match to protein family HMM PF01738; dienelactone hydrolase complement(4729428..4730102) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043749.1 CDS SNSL254_A4861 NC_011080.1 4730452 4731225 D regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4730452..4731225 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043750.1 CDS trpS NC_011080.1 4731226 4732239 R 'catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; tryptophanyl-tRNA synthetase II complement(4731226..4732239) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043751.2 CDS SNSL254_A4863 NC_011080.1 4732957 4733487 D identified by match to protein family HMM PF05638; hypothetical protein 4732957..4733487 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043752.1 CDS SNSL254_A4864 NC_011080.1 4733521 4733643 D identified by glimmer; hypothetical protein 4733521..4733643 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043753.1 CDS SNSL254_A4865 NC_011080.1 4733726 4734460 D identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; aspartate racemase 4733726..4734460 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043754.1 CDS SNSL254_A4866 NC_011080.1 4734466 4735374 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator complement(4734466..4735374) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043755.1 CDS iadA NC_011080.1 4735493 4736665 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975; isoaspartyl dipeptidase complement(4735493..4736665) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043756.1 CDS SNSL254_A4868 NC_011080.1 4736678 4737139 R identified by match to protein family HMM PF07670; hypothetical protein complement(4736678..4737139) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043757.1 CDS SNSL254_A4869 NC_011080.1 4737136 4737807 R identified by match to protein family HMM PF07670; transporter gate domain-containing protein complement(4737136..4737807) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043758.1 CDS SNSL254_A4870 NC_011080.1 4738678 4739862 R identified by match to protein family HMM PF06779; match to protein family HMM PF07690; major facilitator family protein complement(4738678..4739862) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043759.1 CDS SNSL254_A4871 NC_011080.1 4740082 4741353 R identified by match to protein family HMM PF04286; hypothetical protein complement(4740082..4741353) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043760.1 CDS SNSL254_A4872 NC_011080.1 4741440 4742681 R identified by match to protein family HMM PF07690; multidrug resistance protein MdtM complement(4741440..4742681) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043761.1 CDS SNSL254_A4873 NC_011080.1 4742738 4742881 R identified by glimmer; hypothetical protein complement(4742738..4742881) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043762.1 CDS SNSL254_A4874 NC_011080.1 4743160 4744113 D identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 4743160..4744113 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043764.1 CDS SNSL254_A4876 NC_011080.1 4744294 4745664 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 4744294..4745664 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043765.1 CDS SNSL254_A4877 NC_011080.1 4746110 4747030 R transporter complement(4746110..4747030) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043766.1 CDS SNSL254_A4878 NC_011080.1 4747166 4749019 D identified by match to protein family HMM PF03235; hypothetical protein 4747166..4749019 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043767.1 CDS SNSL254_A4879 NC_011080.1 4749064 4749384 R involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE complement(4749064..4749384) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043768.1 CDS SNSL254_A4880 NC_011080.1 4749600 4751315 R identified by match to protein family HMM PF01420; type I restriction-modification system subunit S complement(4749600..4751315) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043769.1 CDS SNSL254_A4881 NC_011080.1 4751315 4752784 R identified by match to protein family HMM PF01170; match to protein family HMM PF02384; type I restriction-modification system M subunit complement(4751315..4752784) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043770.1 CDS SNSL254_A4882 NC_011080.1 4752855 4755284 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463; type I restriction enzyme EcoEI R protein complement(4752855..4755284) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043771.1 CDS SNSL254_A4883 NC_011080.1 4755426 4756394 D hypothetical protein 4755426..4756394 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043772.1 CDS SNSL254_A4884 NC_011080.1 4756510 4757466 R identified by match to protein family HMM PF02492; match to protein family HMM PF07683; GTP-binding protein YjiA complement(4756510..4757466) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043773.1 CDS SNSL254_A4885 NC_011080.1 4757477 4757680 R identified by match to protein family HMM PF04328; hypothetical protein complement(4757477..4757680) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043774.1 CDS SNSL254_A4886 NC_011080.1 4757775 4759925 R identified by match to protein family HMM PF02554; carbon starvation family protein complement(4757775..4759925) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043775.1 CDS SNSL254_A4887 NC_011080.1 4760292 4761953 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 4760292..4761953 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043776.1 CDS SNSL254_A4888 NC_011080.1 4762066 4762215 R hypothetical protein complement(4762066..4762215) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043777.1 CDS SNSL254_A4889 NC_011080.1 4762277 4765042 D identified by match to protein family HMM PF00158; match to protein family HMM PF00874; sigma-54 dependent DNA-binding response regulator 4762277..4765042 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043778.1 CDS SNSL254_A4890 NC_011080.1 4765144 4765566 D identified by match to protein family HMM PF03610; PTS system fructose subfamily transporter subunit IIA 4765144..4765566 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043779.1 CDS SNSL254_A4891 NC_011080.1 4765581 4766042 D identified by match to protein family HMM PF03830; PTS system transporter subunit IIB 4765581..4766042 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043780.1 CDS SNSL254_A4892 NC_011080.1 4766068 4766847 D identified by match to protein family HMM PF03609; PTS system transporter subunit IIC 4766068..4766847 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043781.1 CDS SNSL254_A4893 NC_011080.1 4766825 4767673 D identified by match to protein family HMM PF03613; fructose permease iid component 4766825..4767673 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043782.1 CDS SNSL254_A4894 NC_011080.1 4767686 4768747 D identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase 4767686..4768747 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043783.1 CDS SNSL254_A4895 NC_011080.1 4768765 4769775 D identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase 4768765..4769775 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043784.1 CDS SNSL254_A4896 NC_011080.1 4769908 4772199 R catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I complement(4769908..4772199) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043785.1 CDS SNSL254_A4897 NC_011080.1 4772482 4772943 R hypothetical protein complement(4772482..4772943) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043786.1 CDS SNSL254_A4898 NC_011080.1 4773001 4773738 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(4773001..4773738) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043787.1 CDS SNSL254_A4899 NC_011080.1 4773741 4774280 R 'This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N''; primosomal protein DnaI complement(4773741..4774280) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043788.1 CDS SNSL254_A4900 NC_011080.1 4774373 4774846 R hypothetical protein complement(4774373..4774846) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043789.1 CDS SNSL254_A4901 NC_011080.1 4774837 4775781 R identified by match to protein family HMM PF06738; hypothetical protein complement(4774837..4775781) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043790.1 CDS SNSL254_A4902 NC_011080.1 4775795 4775950 R hypothetical protein complement(4775795..4775950) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043791.1 CDS SNSL254_A4903 NC_011080.1 4776326 4777051 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 4776326..4777051 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043792.1 CDS SNSL254_A4904 NC_011080.1 4777012 4777686 D regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4777012..4777686 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043793.1 CDS SNSL254_A4905 NC_011080.1 4777737 4778195 R identified by match to protein family HMM PF04073; prolyl-tRNA synthetase complement(4777737..4778195) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043794.1 CDS SNSL254_A4906 NC_011080.1 4778346 4779134 R identified by match to protein family HMM PF06276; ferric hydroximate transport ferric iron reductase complement(4778346..4779134) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043795.2 CDS SNSL254_A4907 NC_011080.1 4779255 4780319 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(4779255..4780319) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043796.1 CDS SNSL254_A4908 NC_011080.1 4780570 4780806 D identified by match to protein family HMM PF07256; tryptophan-specific transport protein 4780570..4780806 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043797.1 CDS rsmC NC_011080.1 4781347 4782375 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(4781347..4782375) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043798.1 CDS holD NC_011080.1 4782478 4782915 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4782478..4782915 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043799.2 CDS rimI NC_011080.1 4782860 4783306 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 4782860..4783306 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043800.1 CDS yjjG NC_011080.1 4783328 4784005 D 'manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily'; nucleotidase 4783328..4784005 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043801.1 CDS prfC NC_011080.1 4784097 4785686 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4784097..4785686 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043802.1 CDS osmY NC_011080.1 4786088 4786705 D identified by match to protein family HMM PF04972; hypothetical protein 4786088..4786705 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043803.1 CDS SNSL254_A4918 NC_011080.1 4786834 4786995 D identified by glimmer; hypothetical protein 4786834..4786995 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043804.1 CDS SNSL254_A4919 NC_011080.1 4787098 4788192 D identified by match to protein family HMM PF01734; patatin 4787098..4788192 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043805.1 CDS SNSL254_A4920 NC_011080.1 4788189 4788962 D identified by match to protein family HMM PF01026; deoxyribonuclease YjjV 4788189..4788962 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043806.1 CDS SNSL254_A4921 NC_011080.1 4788995 4789858 R pyruvate formate lyase activating enzyme complement(4788995..4789858) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043807.1 CDS SNSL254_A4922 NC_011080.1 4789830 4791380 R hypothetical protein complement(4789830..4791380) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043808.1 CDS deoC NC_011080.1 4791604 4792419 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4791604..4792419 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043809.1 CDS deoA NC_011080.1 4792543 4793865 D 'Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate'; thymidine phosphorylase 4792543..4793865 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043810.1 CDS deoB NC_011080.1 4793917 4795140 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4793917..4795140 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043811.1 CDS deoD NC_011080.1 4795350 4796069 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4795350..4796069 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043812.1 CDS SNSL254_A4927 NC_011080.1 4796107 4796679 R hypothetical protein complement(4796107..4796679) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043813.1 CDS SNSL254_A4928 NC_011080.1 4796676 4799084 R identified by match to protein family HMM PF00577; fimbrial usher protein complement(4796676..4799084) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043814.1 CDS SNSL254_A4929 NC_011080.1 4799098 4799805 R member of the periplasmic pilus chaperone family of proteins; periplasmic chaperone protein complement(4799098..4799805) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043815.1 CDS SNSL254_A4930 NC_011080.1 4799883 4800572 R identified by match to protein family HMM PF06551; hypothetical protein complement(4799883..4800572) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043816.1 CDS SNSL254_A4931 NC_011080.1 4800620 4801309 R identified by match to protein family HMM PF06551; hypothetical protein complement(4800620..4801309) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043817.1 CDS SNSL254_A4932 NC_011080.1 4801371 4801520 D identified by glimmer; hypothetical protein 4801371..4801520 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043818.1 CDS lplA NC_011080.1 4801622 4802638 R Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A complement(4801622..4802638) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043819.1 CDS SNSL254_A4935 NC_011080.1 4802672 4803316 R hypothetical protein complement(4802672..4803316) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043820.1 CDS serB NC_011080.1 4803433 4804401 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4803433..4804401 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043821.1 CDS radA NC_011080.1 4804485 4805867 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4804485..4805867 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043822.1 CDS SNSL254_A4938 NC_011080.1 4806018 4807250 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4806018..4807250 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043823.1 CDS SNSL254_A4939 NC_011080.1 4807368 4809035 R 'ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence'; ABC transporter ATP-binding protein complement(4807368..4809035) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043824.1 CDS SNSL254_A4940 NC_011080.1 4809244 4811181 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4809244..4811181 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043825.1 CDS trpR NC_011080.1 4811239 4811565 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4811239..4811565 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043826.1 CDS SNSL254_A4942 NC_011080.1 4811667 4812182 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(4811667..4812182) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043827.1 CDS SNSL254_A4943 NC_011080.1 4812231 4812878 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4812231..4812878 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043828.1 CDS rob NC_011080.1 4812875 4813744 R identified by match to protein family HMM PF00165; match to protein family HMM PF06445; right origin-binding protein complement(4812875..4813744) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043829.1 CDS SNSL254_A4945 NC_011080.1 4813956 4814429 D identified by match to protein family HMM PF05981; hypothetical protein 4813956..4814429 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043830.1 CDS SNSL254_A4946 NC_011080.1 4814442 4815131 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4814442..4815131 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043831.1 CDS SNSL254_A4947 NC_011080.1 4815131 4816555 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4815131..4816555 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043832.1 CDS SNSL254_A4948 NC_011080.1 4816613 4817962 D identified by match to protein family HMM PF06123; hypothetical protein 4816613..4817962 Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043833.1 CDS SNSL254_A4949 NC_011080.1 4818020 4819105 R identified by match to protein family HMM PF00419; major fimbrial subunit complement(4818020..4819105) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043834.1 CDS SNSL254_A4950 NC_011080.1 4819146 4819703 R identified by match to protein family HMM PF00419; fimbrial subunit complement(4819146..4819703) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043835.2 CDS SNSL254_A4951 NC_011080.1 4819721 4822258 R identified by match to protein family HMM PF00577; outer membrane usher protein SfmD complement(4819721..4822258) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043836.1 CDS SNSL254_A4952 NC_011080.1 4822304 4822987 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pili assembly chaperone complement(4822304..4822987) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043837.1 CDS SNSL254_A4953 NC_011080.1 4823058 4823603 R identified by match to protein family HMM PF00419; fimbrial chaperone complement(4823058..4823603) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043838.1 CDS SNSL254_A4954 NC_011080.1 4823942 4824613 R hypothetical protein complement(4823942..4824613) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043839.1 CDS arcA NC_011080.1 4825579 4826295 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator complement(4825579..4826295) Salmonella enterica subsp. enterica serovar Newport str. SL254 YP_002043840.1 CDS SNSL254_A4957 NC_011080.1 4826931 4827617 D member of the SPOUT superfamily of methyltransferases; RNA methyltransferase 4826931..4827617 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0273 tRNA SNSL254_A0273 NC_011080.1 292964 293040 D tRNA-Ile 292964..293040 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0274 tRNA SNSL254_A0274 NC_011080.1 293149 293226 D tRNA-Ala 293149..293226 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0279 tRNA SNSL254_A0279 NC_011080.1 296807 296885 D tRNA-Asp 296807..296885 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0290 tRNA SNSL254_A0290 NC_011080.1 306246 306324 D tRNA-Asp 306246..306324 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0364 tRNA SNSL254_A0364 NC_011080.1 373256 373331 D tRNA-Thr 373256..373331 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0606 tRNA SNSL254_A0606 NC_011080.1 617937 618013 D tRNA-Arg 617937..618013 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0732 tRNA SNSL254_A0732 NC_011080.1 742404 742480 R tRNA-Gln complement(742404..742480) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0733 tRNA SNSL254_A0733 NC_011080.1 742522 742598 R tRNA-Gln complement(742522..742598) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0734 tRNA SNSL254_A0734 NC_011080.1 742643 742721 R tRNA-Met complement(742643..742721) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0735 tRNA SNSL254_A0735 NC_011080.1 742735 742811 R tRNA-Gln complement(742735..742811) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0736 tRNA SNSL254_A0736 NC_011080.1 742846 742920 R tRNA-Gln complement(742846..742920) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0737 tRNA SNSL254_A0737 NC_011080.1 742943 743029 R tRNA-Leu complement(742943..743029) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0738 tRNA SNSL254_A0738 NC_011080.1 743036 743114 R tRNA-Met complement(743036..743114) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0814 tRNA SNSL254_A0814 NC_011080.1 823218 823295 D tRNA-Lys 823218..823295 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0815 tRNA SNSL254_A0815 NC_011080.1 823431 823506 D tRNA-Val 823431..823506 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0816 tRNA SNSL254_A0816 NC_011080.1 823510 823585 D tRNA-Lys 823510..823585 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0817 tRNA SNSL254_A0817 NC_011080.1 823634 823711 D tRNA-Lys 823634..823711 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0818 tRNA SNSL254_A0818 NC_011080.1 823759 823836 D tRNA-Lys 823759..823836 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0819 tRNA SNSL254_A0819 NC_011080.1 823970 824045 D tRNA-Lys 823970..824045 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0983 tRNA SNSL254_A0983 NC_011080.1 987885 987974 R tRNA-Ser complement(987885..987974) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A1128 tRNA SNSL254_A1128 NC_011080.1 1135793 1135882 D tRNA-Ser 1135793..1135882 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A1229 tRNA SNSL254_A1229 NC_011080.1 1226528 1226617 R tRNA-Ser complement(1226528..1226617) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A1350 tRNA SNSL254_A1350 NC_011080.1 1334989 1335067 D tRNA-Arg 1334989..1335067 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A1351 tRNA SNSL254_A1351 NC_011080.1 1335069 1335137 D tRNA-OTHER 1335069..1335137 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A1367 tRNA SNSL254_A1367 NC_011080.1 1347427 1347505 D tRNA-Arg 1347427..1347505 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A1533 tRNA SNSL254_A1533 NC_011080.1 1501086 1501164 R tRNA-Val complement(1501086..1501164) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A1534 tRNA SNSL254_A1534 NC_011080.1 1501173 1501251 R tRNA-Val complement(1501173..1501251) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A1884 tRNA SNSL254_A1884 NC_011080.1 1848909 1848995 D tRNA-Tyr 1848909..1848995 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A1886 tRNA SNSL254_A1886 NC_011080.1 1849204 1849290 D tRNA-Tyr 1849204..1849290 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2105 tRNA SNSL254_A2105 NC_011080.1 2040312 2040398 R tRNA-Leu complement(2040312..2040398) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2106 tRNA SNSL254_A2106 NC_011080.1 2040410 2040483 R tRNA-Cys complement(2040410..2040483) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2107 tRNA SNSL254_A2107 NC_011080.1 2040536 2040611 R tRNA-Gly complement(2040536..2040611) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2165 tRNA SNSL254_A2165 NC_011080.1 2086423 2086514 R tRNA-Ser complement(2086423..2086514) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2167 tRNA SNSL254_A2167 NC_011080.1 2087499 2087576 D tRNA-Asn 2087499..2087576 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2170 tRNA SNSL254_A2170 NC_011080.1 2088468 2088545 D tRNA-Asn 2088468..2088545 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2182 tRNA SNSL254_A2182 NC_011080.1 2097713 2097790 R tRNA-Asn complement(2097713..2097790) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2184 tRNA SNSL254_A2184 NC_011080.1 2099546 2099623 D tRNA-Asn 2099546..2099623 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2423 tRNA SNSL254_A2423 NC_011080.1 2341974 2342052 D tRNA-Pro 2341974..2342052 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2583 tRNA SNSL254_A2583 NC_011080.1 2504793 2504869 D tRNA-Arg 2504793..2504869 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2603 tRNA SNSL254_A2603 NC_011080.1 2527870 2527947 R tRNA-Ala complement(2527870..2527947) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2604 tRNA SNSL254_A2604 NC_011080.1 2527988 2528065 R tRNA-Ala complement(2527988..2528065) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2608 tRNA SNSL254_A2608 NC_011080.1 2530770 2530845 D tRNA-Val 2530770..2530845 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2609 tRNA SNSL254_A2609 NC_011080.1 2530890 2530967 D tRNA-Val 2530890..2530967 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2610 tRNA SNSL254_A2610 NC_011080.1 2531009 2531086 D tRNA-Val 2531009..2531086 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2611 tRNA SNSL254_A2611 NC_011080.1 2531090 2531165 D tRNA-Lys 2531090..2531165 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2823 tRNA SNSL254_A2823 NC_011080.1 2761679 2761757 R tRNA-Arg complement(2761679..2761757) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2873 tRNA SNSL254_A2873 NC_011080.1 2802482 2802559 R tRNA-Glu complement(2802482..2802559) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3023 tRNA SNSL254_A3023 NC_011080.1 2946426 2946504 R tRNA-Arg complement(2946426..2946504) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3024 tRNA SNSL254_A3024 NC_011080.1 2946696 2946774 R tRNA-Arg complement(2946696..2946774) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3025 tRNA SNSL254_A3025 NC_011080.1 2946835 2946913 R tRNA-Arg complement(2946835..2946913) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3026 tRNA SNSL254_A3026 NC_011080.1 2946973 2947051 R tRNA-Arg complement(2946973..2947051) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3027 tRNA SNSL254_A3027 NC_011080.1 2947053 2947147 R tRNA-Ser complement(2947053..2947147) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3215 tRNA SNSL254_A3215 NC_011080.1 3125402 3125478 D tRNA-Met 3125402..3125478 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3216 tRNA SNSL254_A3216 NC_011080.1 3125508 3125584 D tRNA-Met 3125508..3125584 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3271 tRNA SNSL254_A3271 NC_011080.1 3180955 3181030 R tRNA-Gly complement(3180955..3181030) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3366 tRNA SNSL254_A3366 NC_011080.1 3265479 3265556 D tRNA-Phe 3265479..3265556 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3473 tRNA SNSL254_A3473 NC_011080.1 3368333 3368408 D tRNA-Met 3368333..3368408 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3547 tRNA SNSL254_A3547 NC_011080.1 3440563 3440639 R tRNA-Met complement(3440563..3440639) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3551 tRNA SNSL254_A3551 NC_011080.1 3443811 3443899 R tRNA-Leu complement(3443811..3443899) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3660 tRNA SNSL254_A3660 NC_011080.1 3548823 3548900 R tRNA-Thr complement(3548823..3548900) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3665 tRNA SNSL254_A3665 NC_011080.1 3552323 3552400 R tRNA-Glu complement(3552323..3552400) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3912 tRNA SNSL254_A3912 NC_011080.1 3795115 3795193 R tRNA-Pro complement(3795115..3795193) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4031 tRNA SNSL254_A4031 NC_011080.1 3921726 3921820 D tRNA-Sec 3921726..3921820 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4173 tRNA SNSL254_A4173 NC_011080.1 4068042 4068119 D tRNA-Glu 4068042..4068119 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4178 tRNA SNSL254_A4178 NC_011080.1 4071576 4071654 D tRNA-Asp 4071576..4071654 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4179 tRNA SNSL254_A4179 NC_011080.1 4071661 4071738 D tRNA-Trp 4071661..4071738 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4211 tRNA SNSL254_A4211 NC_011080.1 4107218 4107294 D tRNA-Arg 4107218..4107294 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4212 tRNA SNSL254_A4212 NC_011080.1 4107348 4107425 D tRNA-His 4107348..4107425 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4213 tRNA SNSL254_A4213 NC_011080.1 4107445 4107531 D tRNA-Leu 4107445..4107531 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4214 tRNA SNSL254_A4214 NC_011080.1 4107573 4107651 D tRNA-Pro 4107573..4107651 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4268 tRNA SNSL254_A4268 NC_011080.1 4162408 4162484 D tRNA-Ile 4162408..4162484 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4269 tRNA SNSL254_A4269 NC_011080.1 4162593 4162670 D tRNA-Ala 4162593..4162670 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4465 tRNA SNSL254_A4465 NC_011080.1 4344466 4344543 D tRNA-Glu 4344466..4344543 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4473 tRNA SNSL254_A4473 NC_011080.1 4351499 4351576 D tRNA-Thr 4351499..4351576 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4474 tRNA SNSL254_A4474 NC_011080.1 4351584 4351668 D tRNA-Tyr 4351584..4351668 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4476 tRNA SNSL254_A4476 NC_011080.1 4351785 4351859 D tRNA-Gly 4351785..4351859 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4477 tRNA SNSL254_A4477 NC_011080.1 4351865 4351942 D tRNA-Thr 4351865..4351942 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4512 tRNA SNSL254_A4512 NC_011080.1 4386527 4386604 D tRNA-Glu 4386527..4386604 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4682 tRNA SNSL254_A4682 NC_011080.1 4565987 4566064 R tRNA-Phe complement(4565987..4566064) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4713 tRNA SNSL254_A4713 NC_011080.1 4595836 4595911 D tRNA-Gly 4595836..4595911 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4714 tRNA SNSL254_A4714 NC_011080.1 4595948 4596025 D tRNA-Gly 4595948..4596025 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4715 tRNA SNSL254_A4715 NC_011080.1 4596060 4596137 D tRNA-Gly 4596060..4596137 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4835 tRNA SNSL254_A4835 NC_011080.1 4709545 4709631 D tRNA-Leu 4709545..4709631 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4909 tRNA SNSL254_A4909 NC_011080.1 4780837 4780925 R tRNA-Leu complement(4780837..4780925) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4910 tRNA SNSL254_A4910 NC_011080.1 4780956 4781042 R tRNA-Leu complement(4780956..4781042) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4911 tRNA SNSL254_A4911 NC_011080.1 4781069 4781157 R tRNA-Leu complement(4781069..4781157) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0272 rRNA rrs NC_011080.1 291360 292893 D 16S ribosomal RNA 291360..292893 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0275 rRNA rrl NC_011080.1 293398 296304 D 23S ribosomal RNA 293398..296304 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A0278 rRNA rrf NC_011080.1 296501 296616 D 5S ribosomal RNA 296501..296616 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2869 rRNA rrf NC_011080.1 2798991 2799106 R 5S ribosomal RNA complement(2798991..2799106) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2872 rRNA rrl NC_011080.1 2799303 2802289 R 23S ribosomal RNA complement(2799303..2802289) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A2874 rRNA rrs NC_011080.1 2802645 2804178 R 16S ribosomal RNA complement(2802645..2804178) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3659 rRNA rrf NC_011080.1 3548669 3548784 R 5S ribosomal RNA complement(3548669..3548784) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3661 rRNA rrf NC_011080.1 3548914 3549029 R 5S ribosomal RNA complement(3548914..3549029) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3664 rRNA rrl NC_011080.1 3549226 3552130 R 23S ribosomal RNA complement(3549226..3552130) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A3666 rRNA rrs NC_011080.1 3552486 3554019 R 16S ribosomal RNA complement(3552486..3554019) Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4172 rRNA rrs NC_011080.1 4066423 4067956 D 16S ribosomal RNA 4066423..4067956 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4174 rRNA rrl NC_011080.1 4068312 4071216 D 23S ribosomal RNA 4068312..4071216 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4177 rRNA rrf NC_011080.1 4071408 4071523 D 5S ribosomal RNA 4071408..4071523 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4267 rRNA rrs NC_011080.1 4160804 4162337 D 16S ribosomal RNA 4160804..4162337 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4270 rRNA rrl NC_011080.1 4162852 4165758 D 23S ribosomal RNA 4162852..4165758 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4273 rRNA rrf NC_011080.1 4165852 4165967 D 5S ribosomal RNA 4165852..4165967 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4464 rRNA rrs NC_011080.1 4342762 4344295 D 16S ribosomal RNA 4342762..4344295 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4466 rRNA rrl NC_011080.1 4344726 4347632 D 23S ribosomal RNA 4344726..4347632 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4469 rRNA rrf NC_011080.1 4347829 4347944 D 5S ribosomal RNA 4347829..4347944 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4511 rRNA rrs NC_011080.1 4384823 4386356 D 16S ribosomal RNA 4384823..4386356 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4513 rRNA rrl NC_011080.1 4386995 4389798 D 23S ribosomal RNA 4386995..4389798 Salmonella enterica subsp. enterica serovar Newport str. SL254 SNSL254_A4516 rRNA rrf NC_011080.1 4389995 4390110 D 5S ribosomal RNA 4389995..4390110 Salmonella enterica subsp. enterica serovar Newport str. SL254