-- dump date 20140620_053951 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 chrom_position -- field 4 chromosome -- field 5 codon_start -- field 6 contig -- field 7 description -- field 8 end_pos -- field 9 gene -- field 10 gene_id -- field 11 name -- field 12 organism -- field 13 product -- field 14 protein_id -- field 15 start_pos -- field 16 strand -- field 17 taxid -- field 18 type -- header -- id GI chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001101880.1 134047144 323..862 1 NC_009140.1 hypothetical protein 862 423368000001 SNSL254_pSN254_0001 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101880.1 323 D 423368 CDS YP_001101881.1 134047134 867..1154 1 NC_009140.1 hypothetical protein 1154 423368000002 SNSL254_pSN254_0002 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101881.1 867 D 423368 CDS YP_001101882.1 134047215 1175..2239 1 NC_009140.1 identified by similarity to GB:CAA52023.1; plasmid replication protein RepA 2239 repA 423368000003 repA Salmonella enterica subsp. enterica serovar Newport str. SL254 plasmid replication protein RepA YP_001101882.1 1175 D 423368 CDS YP_001101883.1 134047218 2585..2866 1 NC_009140.1 hypothetical protein 2866 423368000004 SNSL254_pSN254_0004 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101883.1 2585 D 423368 CDS YP_001101884.1 134047132 complement(3276..3710) 1 NC_009140.1 hypothetical protein 3710 423368000005 SNSL254_pSN254_0005 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101884.1 3276 R 423368 CDS YP_001101885.1 134047153 complement(3728..4711) 1 NC_009140.1 identified by match to protein family HMM PF01507; phosphoadenosine phosphosulfate reductase family protein 4711 423368000006 SNSL254_pSN254_0006 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoadenosine phosphosulfate reductase family protein YP_001101885.1 3728 R 423368 CDS YP_001101886.1 134047155 5307..5720 1 NC_009140.1 identified by similarity to GB:BAB77476.1; hypothetical protein 5720 423368000007 SNSL254_pSN254_0007 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101886.1 5307 D 423368 CDS YP_001101887.1 134047200 5725..6246 1 NC_009140.1 identified by similarity to GB:CAE51711.1; hypothetical protein 6246 423368000008 SNSL254_pSN254_0008 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101887.1 5725 D 423368 CDS YP_001101888.1 134047216 6249..6770 1 NC_009140.1 hypothetical protein 6770 423368000009 SNSL254_pSN254_0009 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101888.1 6249 D 423368 CDS YP_001101889.1 134047086 6867..7340 1 NC_009140.1 hypothetical protein 7340 423368000010 SNSL254_pSN254_0010 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101889.1 6867 D 423368 CDS YP_001101890.1 134047223 7351..7644 1 NC_009140.1 hypothetical protein 7644 423368000011 SNSL254_pSN254_0011 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101890.1 7351 D 423368 CDS YP_001101891.1 134047268 7649..8503 1 NC_009140.1 hypothetical protein 8503 423368000012 SNSL254_pSN254_0012 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101891.1 7649 D 423368 CDS YP_001101892.1 134047167 8485..9462 1 NC_009140.1 identified by match to protein family HMM PF01343; signal peptide peptidase SppA domain-containing protein 9462 423368000013 SNSL254_pSN254_0013 Salmonella enterica subsp. enterica serovar Newport str. SL254 signal peptide peptidase SppA domain-containing protein YP_001101892.1 8485 D 423368 CDS YP_001101893.1 134047262 9478..10338 1 NC_009140.1 identified by match to protein family HMM PF01323; DSBA-like thioredoxin domain-containing protein 10338 423368000014 SNSL254_pSN254_0014 Salmonella enterica subsp. enterica serovar Newport str. SL254 DSBA-like thioredoxin domain-containing protein YP_001101893.1 9478 D 423368 CDS YP_001101894.1 134047263 10372..10800 1 NC_009140.1 lipoprotein 10800 423368000015 SNSL254_pSN254_0015 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_001101894.1 10372 D 423368 CDS YP_001101895.1 134047090 10857..11216 1 NC_009140.1 hypothetical protein 11216 423368000016 SNSL254_pSN254_0016 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101895.1 10857 D 423368 CDS YP_001101896.1 134047212 11216..11662 1 NC_009140.1 hypothetical protein 11662 423368000017 SNSL254_pSN254_0017 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101896.1 11216 D 423368 CDS YP_001101897.1 134047154 11659..12177 1 NC_009140.1 hypothetical protein 12177 423368000018 SNSL254_pSN254_0018 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101897.1 11659 D 423368 CDS YP_001101898.1 134047235 12177..12407 1 NC_009140.1 hypothetical protein 12407 423368000019 SNSL254_pSN254_0019 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101898.1 12177 D 423368 CDS YP_001101899.1 134047244 12394..13251 1 NC_009140.1 identified by similarity to GB:BAC41575.1; hypothetical protein 13251 423368000020 SNSL254_pSN254_0020 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101899.1 12394 D 423368 CDS YP_001101900.1 134047145 13482..14009 1 NC_009140.1 identified by match to protein family HMM PF00565; nuclease 14009 423368000021 SNSL254_pSN254_0021 Salmonella enterica subsp. enterica serovar Newport str. SL254 nuclease YP_001101900.1 13482 D 423368 CDS YP_001101901.1 134047232 14067..14339 1 NC_009140.1 identified by match to protein family HMM PF00216; DNA-binding protein HU 14339 hup 423368000022 hup Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding protein HU YP_001101901.1 14067 D 423368 CDS YP_001101902.1 134047206 14427..14720 1 NC_009140.1 identified by similarity to GB:AAN87633.1; hypothetical protein 14720 423368000023 SNSL254_pSN254_0023 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101902.1 14427 D 423368 CDS YP_001101903.1 134047213 complement(14747..15049) 1 NC_009140.1 identified by similarity to GB:AAT09653.1; hypothetical protein 15049 423368000024 SNSL254_pSN254_0024 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101903.1 14747 R 423368 CDS YP_001101904.1 134047109 complement(15054..15404) 1 NC_009140.1 identified by similarity to GB:CAE12736.1; hypothetical protein 15404 423368000025 SNSL254_pSN254_0025 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101904.1 15054 R 423368 CDS YP_001101905.1 134047121 15567..16115 1 NC_009140.1 hypothetical protein 16115 423368000026 SNSL254_pSN254_0026 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101905.1 15567 D 423368 CDS YP_001101906.1 134047091 16456..16650 1 NC_009140.1 hypothetical protein 16650 423368000027 SNSL254_pSN254_0027 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101906.1 16456 D 423368 CDS YP_001101907.1 134047168 16661..17032 1 NC_009140.1 hypothetical protein 17032 423368000028 SNSL254_pSN254_0028 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101907.1 16661 D 423368 CDS YP_001101908.1 134047261 17025..17495 1 NC_009140.1 hypothetical protein 17495 423368000029 SNSL254_pSN254_0029 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101908.1 17025 D 423368 CDS YP_001101909.1 134047228 complement(17510..17845) 1 NC_009140.1 hypothetical protein 17845 423368000030 SNSL254_pSN254_0030 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101909.1 17510 R 423368 CDS YP_001101910.1 134047230 17942..18430 1 NC_009140.1 identified by similarity to GB:AAV97052.1|; match to protein family HMM PF07799; hypothetical protein 18430 423368000031 SNSL254_pSN254_0031 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101910.1 17942 D 423368 CDS YP_001101911.1 134047198 18433..18930 1 NC_009140.1 hypothetical protein 18930 423368000032 SNSL254_pSN254_0032 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101911.1 18433 D 423368 CDS YP_001101912.1 134047087 complement(19145..19867) 1 NC_009140.1 identified by match to protein family HMM PF00665; transposase InsB1 for insertion sequence IS26 19867 insB1 423368000033 insB1 Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsB1 for insertion sequence IS26 YP_001101912.1 19145 R 423368 CDS YP_001101913.1 134047173 complement(19896..20093) 1 NC_009140.1 hypothetical protein 20093 423368000034 SNSL254_pSN254_0034 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101913.1 19896 R 423368 CDS YP_001101914.1 134047092 20382..21104 1 NC_009140.1 identified by match to protein family HMM PF00665; transposase InsB2 for insertion sequence IS26 21104 insB2 423368000035 insB2 Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsB2 for insertion sequence IS26 YP_001101914.1 20382 D 423368 CDS YP_001101915.1 134047139 complement(21138..21629) 1 NC_009140.1 identified by similarity to GB:AAZ65818.1; hypothetical protein 21629 423368000036 SNSL254_pSN254_0036 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101915.1 21138 R 423368 CDS YP_001101916.1 134047193 21736..22473 1 NC_009140.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796; resolvase 22473 423368000037 SNSL254_pSN254_0037 Salmonella enterica subsp. enterica serovar Newport str. SL254 resolvase YP_001101916.1 21736 D 423368 CDS YP_001101917.1 134047191 22905..24398 1 NC_009140.1 identified by match to protein family HMM PF04986; transposase InsA 24398 insA 423368000038 insA Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsA YP_001101917.1 22905 D 423368 CDS YP_001101918.1 134047124 24429..25313 1 NC_009140.1 identified by similarity to GB:AAK64586.1; hypothetical protein 25313 423368000039 SNSL254_pSN254_0039 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101918.1 24429 D 423368 CDS YP_001101919.1 134047163 25530..26744 1 NC_009140.1 identified by similarity to GB:CAD57670.1; match to protein family HMM PF07690; match to protein family HMM TIGR00710; florfenicol/chloramphenicol resistance protein FloR 26744 floR 423368000040 floR Salmonella enterica subsp. enterica serovar Newport str. SL254 florfenicol/chloramphenicol resistance protein FloR YP_001101919.1 25530 D 423368 CDS YP_001101920.1 134047131 26772..27077 1 NC_009140.1 identified by match to protein family HMM PF00126; LysR family transcriptional regulator 27077 423368000041 SNSL254_pSN254_0041 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_001101920.1 26772 D 423368 CDS YP_001101921.1 134047112 complement(27344..28618) 1 NC_009140.1 identified by similarity to SP:P02982; match to protein family HMM PF07690; match to protein family HMM TIGR00880; tetracycline repressor protein TetA, class A 28618 tetA 423368000042 tetA Salmonella enterica subsp. enterica serovar Newport str. SL254 tetracycline repressor protein TetA, class A YP_001101921.1 27344 R 423368 CDS YP_001101922.1 134047255 28622..29299 1 NC_009140.1 identified by similarity to SP:P03038; match to protein family HMM PF00440; match to protein family HMM PF02909; tetracycline repressor protein R, class A 29299 tetR 423368000043 tetR Salmonella enterica subsp. enterica serovar Newport str. SL254 tetracycline repressor protein R, class A YP_001101922.1 28622 D 423368 CDS YP_001101923.1 134047104 complement(29331..29573) 1 NC_009140.1 identified by similarity to GB:AAW58856.1; hypothetical protein 29573 423368000044 SNSL254_pSN254_0044 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101923.1 29331 R 423368 CDS YP_001101924.1 134047221 complement(29879..30709) 1 NC_009140.1 identified by match to protein family HMM PF04655; streptomycin resistance protein StrB 30709 strB 423368000045 strB Salmonella enterica subsp. enterica serovar Newport str. SL254 streptomycin resistance protein StrB YP_001101924.1 29879 R 423368 CDS YP_001101925.1 134047125 complement(30715..31518) 1 NC_009140.1 identified by match to protein family HMM PF01636; streptomycin resistance protein StrA 31518 strA 423368000046 strA Salmonella enterica subsp. enterica serovar Newport str. SL254 streptomycin resistance protein StrA YP_001101925.1 30715 R 423368 CDS YP_001101926.1 134047177 complement(31579..32394) 1 NC_009140.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 2 32394 sul2 423368000047 sul2 Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydropteroate synthase 2 YP_001101926.1 31579 R 423368 CDS YP_001101927.1 134047229 32701..33012 1 NC_009140.1 hypothetical protein 33012 423368000048 SNSL254_pSN254_0048 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101927.1 32701 D 423368 CDS YP_001101928.1 134047169 33186..33971 1 NC_009140.1 identified by match to protein family HMM PF01656; ParA partition protein 33971 423368000049 SNSL254_pSN254_0049 Salmonella enterica subsp. enterica serovar Newport str. SL254 ParA partition protein YP_001101928.1 33186 D 423368 CDS YP_001101929.1 134047105 33975..35156 1 NC_009140.1 identified by match to protein family HMM PF02195; match to protein family HMM PF08535; match to protein family HMM TIGR00180; ParB partition protein 35156 423368000050 SNSL254_pSN254_0050 Salmonella enterica subsp. enterica serovar Newport str. SL254 ParB partition protein YP_001101929.1 33975 D 423368 CDS YP_001101930.1 134047247 35199..35477 1 NC_009140.1 identified by similarity to GB:CAG19260.1; hypothetical protein 35477 423368000051 SNSL254_pSN254_0051 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101930.1 35199 D 423368 CDS YP_001101931.1 134047269 complement(35530..36165) 1 NC_009140.1 hypothetical protein 36165 423368000052 SNSL254_pSN254_0052 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101931.1 35530 R 423368 CDS YP_001101932.1 134047210 36727..37104 1 NC_009140.1 identified by similarity to GB:BAC41599.1; hypothetical protein 37104 423368000053 SNSL254_pSN254_0053 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101932.1 36727 D 423368 CDS YP_001101933.1 134047148 37353..38027 1 NC_009140.1 hypothetical protein 38027 423368000054 SNSL254_pSN254_0054 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101933.1 37353 D 423368 CDS YP_001101934.1 134047257 38020..38526 1 NC_009140.1 hypothetical protein 38526 423368000055 SNSL254_pSN254_0055 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101934.1 38020 D 423368 CDS YP_001101935.1 134047088 38532..38843 1 NC_009140.1 hypothetical protein 38843 423368000056 SNSL254_pSN254_0056 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101935.1 38532 D 423368 CDS YP_001101936.1 134047256 38852..39352 1 NC_009140.1 identified by similarity to GB:BAB93678.1; hypothetical protein 39352 423368000057 SNSL254_pSN254_0057 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101936.1 38852 D 423368 CDS YP_001101937.1 134047186 39356..40783 1 NC_009140.1 identified by match to protein family HMM PF00145; C-5 cytosine-specific DNA methylase family protein 40783 423368000058 SNSL254_pSN254_0058 Salmonella enterica subsp. enterica serovar Newport str. SL254 C-5 cytosine-specific DNA methylase family protein YP_001101937.1 39356 D 423368 CDS YP_001101938.1 134047162 40783..41439 1 NC_009140.1 hypothetical protein 41439 423368000059 SNSL254_pSN254_0059 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101938.1 40783 D 423368 CDS YP_001101939.1 134047238 41495..42112 1 NC_009140.1 hypothetical protein 42112 423368000060 SNSL254_pSN254_0060 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101939.1 41495 D 423368 CDS YP_001101940.1 134047270 42345..42623 1 NC_009140.1 identified by similarity to GB:AAP44279.1; hypothetical protein 42623 423368000061 SNSL254_pSN254_0061 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101940.1 42345 D 423368 CDS YP_001101941.1 134047174 complement(42714..43202) 1 NC_009140.1 hypothetical protein 43202 423368000062 SNSL254_pSN254_0062 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101941.1 42714 R 423368 CDS YP_001101942.1 134047127 complement(43217..45409) 1 NC_009140.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01056; DNA topoisomerase III 45409 topB 423368000063 topB Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA topoisomerase III YP_001101942.1 43217 R 423368 CDS YP_001101943.1 134047182 complement(45624..46241) 1 NC_009140.1 lipoprotein 46241 423368000064 SNSL254_pSN254_0064 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_001101943.1 45624 R 423368 CDS YP_001101944.1 134047158 46409..49381 1 NC_009140.1 identified by similarity to GB:AAL59675.1; match to protein family HMM PF07514; type IV conjugative transfer system protein TraI 49381 traI 423368000065 traI Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraI YP_001101944.1 46409 D 423368 CDS YP_001101945.1 134047236 49378..51243 1 NC_009140.1 identified by similarity to GB:AAL59680.1; type IV conjugative transfer system protein TraD 51243 traD 423368000066 traD Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraD YP_001101945.1 49378 D 423368 CDS YP_001101946.1 134047096 51254..51838 1 NC_009140.1 hypothetical protein 51838 423368000067 SNSL254_pSN254_0067 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101946.1 51254 D 423368 CDS YP_001101947.1 134047224 51795..52424 1 NC_009140.1 identified by similarity to GB:AAL59721.1; type IV conjugative transfer system coupling factor 52424 423368000068 SNSL254_pSN254_0068 Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system coupling factor YP_001101947.1 51795 D 423368 CDS YP_001101948.1 134047258 52434..52880 1 NC_009140.1 hypothetical protein 52880 423368000069 SNSL254_pSN254_0069 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101948.1 52434 D 423368 CDS YP_001101949.1 134047170 52890..53267 1 NC_009140.1 hypothetical protein 53267 423368000070 SNSL254_pSN254_0070 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101949.1 52890 D 423368 CDS YP_001101950.1 134047099 53339..53929 1 NC_009140.1 hypothetical protein 53929 423368000071 SNSL254_pSN254_0071 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101950.1 53339 D 423368 CDS YP_001101951.1 134047242 54265..54630 1 NC_009140.1 hypothetical protein 54630 423368000072 SNSL254_pSN254_0072 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101951.1 54265 D 423368 CDS YP_001101952.1 134047157 54775..55056 1 NC_009140.1 identified by similarity to GB:AAL59674.1; match to protein family HMM TIGR02762; type IV conjugative transfer system protein TraL 55056 traL 423368000073 traL Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraL YP_001101952.1 54775 D 423368 CDS YP_001101953.1 134047205 55053..55679 1 NC_009140.1 identified by similarity to GB:AAL59679.1; type IV conjugative transfer system protein TraE 55679 traE 423368000074 traE Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraE YP_001101953.1 55053 D 423368 CDS YP_001101954.1 134047107 55663..56580 1 NC_009140.1 identified by similarity to GB:AAM08021.1; hypothetical protein 56580 423368000075 SNSL254_pSN254_0075 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101954.1 55663 D 423368 CDS YP_001101955.1 134047150 56577..57893 1 NC_009140.1 identified by similarity to GB:AAL59682.1; match to protein family HMM PF06447; type IV conjugative transfer system protein TraB 57893 traB 423368000076 traB Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraB YP_001101955.1 56577 D 423368 CDS YP_001101956.1 134047241 57890..58468 1 NC_009140.1 identified by similarity to GB:AAL59672.1; match to protein family HMM TIGR02747; type IV conjugative transfer system protein TraV 58468 traV 423368000077 traV Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraV YP_001101956.1 57890 D 423368 CDS YP_001101957.1 134047118 58481..58864 1 NC_009140.1 identified by similarity to GB:AAL59683.1; type IV conjugative transfer system protein TraA 58864 traA 423368000078 traA Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraA YP_001101957.1 58481 D 423368 CDS YP_001101958.1 134047123 complement(60806..61513) 1 NC_009140.1 identified by similarity to GB:AAM08034.1; hypothetical protein 61513 423368000081 SNSL254_pSN254_0081 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101958.1 60806 R 423368 CDS YP_001101959.1 134047225 complement(61662..67148) 1 NC_009140.1 hypothetical protein 67148 423368000082 SNSL254_pSN254_0082 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101959.1 61662 R 423368 CDS YP_001101960.1 134047260 67753..68193 1 NC_009140.1 identified by similarity to SP:P69937; match to protein family HMM PF00893; quaternary ammonium compound-resistance protein SugE1 68193 sugE1 423368000084 sugE1 Salmonella enterica subsp. enterica serovar Newport str. SL254 quaternary ammonium compound-resistance protein SugE1 YP_001101960.1 67753 D 423368 CDS YP_001101961.1 134047101 complement(68190..68723) 1 NC_009140.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 68723 blc1 423368000085 blc1 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein Blc YP_001101961.1 68190 R 423368 CDS YP_001101962.1 134047199 complement(68817..70046) 1 NC_009140.1 identified by similarity to GB:AAX86815.1; match to protein family HMM PF00144; beta-lactamase 70046 ampC 423368000086 ampC Salmonella enterica subsp. enterica serovar Newport str. SL254 beta-lactamase YP_001101962.1 68817 R 423368 CDS YP_001101963.1 134047113 70781..72043 1 NC_009140.1 identified by match to protein family HMM PF01609; transposase InsC3 for insertion sequence ISEc9 72043 insC3 423368000088 insC3 Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsC3 for insertion sequence ISEc9 YP_001101963.1 70781 D 423368 CDS YP_001101964.1 134047254 72283..73512 1 NC_009140.1 identified by similarity to GB:AAX86815.1; match to protein family HMM PF00144; beta-lactamase 73512 ampC 423368000089 ampC Salmonella enterica subsp. enterica serovar Newport str. SL254 beta-lactamase YP_001101964.1 72283 D 423368 CDS YP_001101965.1 134047098 73606..74139 1 NC_009140.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 74139 blc2 423368000090 blc2 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein Blc YP_001101965.1 73606 D 423368 CDS YP_001101966.1 134047220 complement(74136..74576) 1 NC_009140.1 identified by similarity to SP:P69937; match to protein family HMM PF00893; quaternary ammonium compound-resistance protein SugE2 74576 sugE2 423368000091 sugE2 Salmonella enterica subsp. enterica serovar Newport str. SL254 quaternary ammonium compound-resistance protein SugE2 YP_001101966.1 74136 R 423368 CDS YP_001101967.1 134047272 75181..80667 1 NC_009140.1 hypothetical protein 80667 423368000093 SNSL254_pSN254_0093 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101967.1 75181 D 423368 CDS YP_001101968.1 134047146 80816..81523 1 NC_009140.1 identified by similarity to GB:AAM08034.1; hypothetical protein 81523 423368000094 SNSL254_pSN254_0094 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101968.1 80816 D 423368 CDS YP_001101969.1 134047203 81520..83967 1 NC_009140.1 identified by match to protein family HMM TIGR02746; type IV conjugative transfer system protein TraC 83967 traC 423368000095 traC Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraC YP_001101969.1 81520 D 423368 CDS YP_001101970.1 134047176 83982..84299 1 NC_009140.1 hypothetical protein 84299 423368000096 SNSL254_pSN254_0096 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101970.1 83982 D 423368 CDS YP_001101971.1 134047165 84296..84826 1 NC_009140.1 identified by similarity to GB:AAL59670.1; type IV conjugative transfer system signal peptidase 84826 423368000097 SNSL254_pSN254_0097 Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system signal peptidase YP_001101971.1 84296 D 423368 CDS YP_001101972.1 134047266 84789..86054 1 NC_009140.1 identified by similarity to GB:AAL59671.1; type IV conjugative transfer system protein TraW 86054 traW 423368000098 traW Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraW YP_001101972.1 84789 D 423368 CDS YP_001101973.1 134047159 86051..86722 1 NC_009140.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase domain-containing protein 86722 423368000099 SNSL254_pSN254_0099 Salmonella enterica subsp. enterica serovar Newport str. SL254 cyclic diguanylate phosphodiesterase domain-containing protein YP_001101973.1 86051 D 423368 CDS YP_001101974.1 134047249 86719..87726 1 NC_009140.1 identified by match to protein family HMM PF06834; type IV conjugative transfer system protein TraU 87726 traU 423368000100 traU Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraU YP_001101974.1 86719 D 423368 CDS YP_001101975.1 134047133 87842..90637 1 NC_009140.1 TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 90637 traN 423368000101 traN Salmonella enterica subsp. enterica serovar Newport str. SL254 conjugal transfer mating pair stabilization protein TraN YP_001101975.1 87842 D 423368 CDS YP_001101976.1 134047164 complement(90676..91536) 1 NC_009140.1 lipoprotein 91536 423368000102 SNSL254_pSN254_0102 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_001101976.1 90676 R 423368 CDS YP_001101977.1 134047093 complement(91659..92300) 1 NC_009140.1 identified by similarity to GB:AAM08043.1; hypothetical protein 92300 423368000103 SNSL254_pSN254_0103 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101977.1 91659 R 423368 CDS YP_001101978.1 134047273 92595..92915 1 NC_009140.1 hypothetical protein 92915 423368000104 SNSL254_pSN254_0104 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101978.1 92595 D 423368 CDS YP_001101979.1 134047084 93219..93404 1 NC_009140.1 hypothetical protein 93404 423368000105 SNSL254_pSN254_0105 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101979.1 93219 D 423368 CDS YP_001101980.1 134047151 93624..94592 1 NC_009140.1 identified by match to protein family HMM PF07728; AAA family ATPase 94592 423368000106 SNSL254_pSN254_0106 Salmonella enterica subsp. enterica serovar Newport str. SL254 AAA family ATPase YP_001101980.1 93624 D 423368 CDS YP_001101981.1 134047175 94603..95511 1 NC_009140.1 hypothetical protein 95511 423368000107 SNSL254_pSN254_0107 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101981.1 94603 D 423368 CDS YP_001101982.1 134047264 95575..96102 1 NC_009140.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand DNA-binding protein 96102 ssb 423368000108 ssb Salmonella enterica subsp. enterica serovar Newport str. SL254 single-strand DNA-binding protein YP_001101982.1 95575 D 423368 CDS YP_001101983.1 134047188 96197..97186 1 NC_009140.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913; phage recombination protein Bet 97186 bet 423368000109 bet Salmonella enterica subsp. enterica serovar Newport str. SL254 phage recombination protein Bet YP_001101983.1 96197 D 423368 CDS YP_001101984.1 134047100 97249..98259 1 NC_009140.1 identified by match to protein family HMM TIGR03033; phage-type endonuclease 98259 423368000110 SNSL254_pSN254_0110 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage-type endonuclease YP_001101984.1 97249 D 423368 CDS YP_001101985.1 134047122 98459..99736 1 NC_009140.1 identified by similarity to GB:AAL59707.1; hypothetical protein 99736 423368000111 SNSL254_pSN254_0111 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101985.1 98459 D 423368 CDS YP_001101986.1 134047208 99821..101617 1 NC_009140.1 identified by match to protein family HMM PF00092; von Willebrand factor type A domain-containing protein 101617 423368000112 SNSL254_pSN254_0112 Salmonella enterica subsp. enterica serovar Newport str. SL254 von Willebrand factor type A domain-containing protein YP_001101986.1 99821 D 423368 CDS YP_001101987.1 134047183 101679..102014 1 NC_009140.1 hypothetical protein 102014 423368000113 SNSL254_pSN254_0113 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101987.1 101679 D 423368 CDS YP_001101988.1 134047195 102279..102818 1 NC_009140.1 hypothetical protein 102818 423368000114 SNSL254_pSN254_0114 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101988.1 102279 D 423368 CDS YP_001101989.1 134047114 102909..103409 1 NC_009140.1 hypothetical protein 103409 423368000115 SNSL254_pSN254_0115 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101989.1 102909 D 423368 CDS YP_001101990.1 134047202 103468..104367 1 NC_009140.1 hypothetical protein 104367 423368000116 SNSL254_pSN254_0116 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101990.1 103468 D 423368 CDS YP_001101991.1 134047179 104433..104657 1 NC_009140.1 identified by match to protein family HMM PF00111; 2Fe-2S-binding domain-containing protein 104657 423368000117 SNSL254_pSN254_0117 Salmonella enterica subsp. enterica serovar Newport str. SL254 2Fe-2S-binding domain-containing protein YP_001101991.1 104433 D 423368 CDS YP_001101992.1 134047237 104719..105108 1 NC_009140.1 hypothetical protein 105108 423368000118 SNSL254_pSN254_0118 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101992.1 104719 D 423368 CDS YP_001101993.1 134047128 105098..105550 1 NC_009140.1 hypothetical protein 105550 423368000119 SNSL254_pSN254_0119 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101993.1 105098 D 423368 CDS YP_001101994.1 134047204 105555..105830 1 NC_009140.1 hypothetical protein 105830 423368000120 SNSL254_pSN254_0120 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101994.1 105555 D 423368 CDS YP_001101995.1 134047126 105888..106079 1 NC_009140.1 hypothetical protein 106079 423368000121 SNSL254_pSN254_0121 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101995.1 105888 D 423368 CDS YP_001101996.1 134047102 106148..106501 1 NC_009140.1 identified by similarity to GB:AAM08083.1; hypothetical protein 106501 423368000122 SNSL254_pSN254_0122 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101996.1 106148 D 423368 CDS YP_001101997.1 134047207 106693..107037 1 NC_009140.1 hypothetical protein 107037 423368000123 SNSL254_pSN254_0123 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101997.1 106693 D 423368 CDS YP_001101998.1 134047149 107115..107417 1 NC_009140.1 hypothetical protein 107417 423368000124 SNSL254_pSN254_0124 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001101998.1 107115 D 423368 CDS YP_001101999.1 134047248 107495..109120 1 NC_009140.1 identified by match to protein family HMM PF00145; C-5 cytosine-specific DNA methylase 109120 423368000125 SNSL254_pSN254_0125 Salmonella enterica subsp. enterica serovar Newport str. SL254 C-5 cytosine-specific DNA methylase YP_001101999.1 107495 D 423368 CDS YP_001102000.1 134047130 109181..109612 1 NC_009140.1 hypothetical protein 109612 423368000126 SNSL254_pSN254_0126 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102000.1 109181 D 423368 CDS YP_001102001.1 134047156 109686..110240 1 NC_009140.1 hypothetical protein 110240 423368000127 SNSL254_pSN254_0127 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102001.1 109686 D 423368 CDS YP_001102002.1 134047097 110473..110859 1 NC_009140.1 hypothetical protein 110859 423368000128 SNSL254_pSN254_0128 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102002.1 110473 D 423368 CDS YP_001102003.1 134047259 110947..113400 1 NC_009140.1 identified by similarity to GB:CAE51790.1; hypothetical protein 113400 423368000129 SNSL254_pSN254_0129 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102003.1 110947 D 423368 CDS YP_001102004.1 134047135 113602..113805 1 NC_009140.1 hypothetical protein 113805 423368000130 SNSL254_pSN254_0130 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102004.1 113602 D 423368 CDS YP_001102005.1 134047192 113877..114482 1 NC_009140.1 identified by similarity to SP:P76491; 5'-nucleotidase 114482 423368000131 SNSL254_pSN254_0131 Salmonella enterica subsp. enterica serovar Newport str. SL254 5'-nucleotidase YP_001102005.1 113877 D 423368 CDS YP_001102006.1 134047103 114475..114744 1 NC_009140.1 identified by similarity to GB:AAR12555.1; hypothetical protein 114744 423368000132 SNSL254_pSN254_0132 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102006.1 114475 D 423368 CDS YP_001102007.1 134047190 114758..114976 1 NC_009140.1 hypothetical protein 114976 423368000133 SNSL254_pSN254_0133 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102007.1 114758 D 423368 CDS YP_001102008.1 134047085 115050..115607 1 NC_009140.1 hypothetical protein 115607 423368000134 SNSL254_pSN254_0134 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102008.1 115050 D 423368 CDS YP_001102009.1 134047178 115649..116533 1 NC_009140.1 identified by similarity to GB:AAK16082.1; hypothetical protein 116533 423368000135 SNSL254_pSN254_0135 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102009.1 115649 D 423368 CDS YP_001102010.1 134047180 116992..117378 1 NC_009140.1 hypothetical protein 117378 423368000136 SNSL254_pSN254_0136 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102010.1 116992 D 423368 CDS YP_001102011.1 134047267 117556..119283 1 NC_009140.1 identified by similarity to GB:AAM08013.1; match to protein family HMM PF08273; hypothetical protein 119283 423368000137 SNSL254_pSN254_0137 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102011.1 117556 D 423368 CDS YP_001102012.1 134047201 119270..119548 1 NC_009140.1 hypothetical protein 119548 423368000138 SNSL254_pSN254_0138 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102012.1 119270 D 423368 CDS YP_001102013.1 134047251 119621..119842 1 NC_009140.1 hypothetical protein 119842 423368000139 SNSL254_pSN254_0139 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102013.1 119621 D 423368 CDS YP_001102014.1 134047231 complement(120024..121028) 1 NC_009140.1 identified by match to protein family HMM PF02371; transposase InsD1 for insertion sequence IS4321R 121028 insD1 423368000140 insD1 Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsD1 for insertion sequence IS4321R YP_001102014.1 120024 R 423368 CDS YP_001102015.1 134047160 complement(121107..124079) 1 NC_009140.1 identified by match to protein family HMM PF01526; transposon Tn21 transposase TnpA 124079 tnpA 423368000141 tnpA Salmonella enterica subsp. enterica serovar Newport str. SL254 transposon Tn21 transposase TnpA YP_001102015.1 121107 R 423368 CDS YP_001102016.1 134047152 complement(124945..125958) 1 NC_009140.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02249; integrase IntI1 for transposon Tn21 125958 intI1 423368000143 intI1 Salmonella enterica subsp. enterica serovar Newport str. SL254 integrase IntI1 for transposon Tn21 YP_001102016.1 124945 R 423368 CDS YP_001102017.1 134047161 125888..126895 1 NC_009140.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 126895 aadA 423368000144 aadA Salmonella enterica subsp. enterica serovar Newport str. SL254 aminoglycoside resistance protein YP_001102017.1 125888 D 423368 CDS YP_001102018.1 134047089 127059..127961 1 NC_009140.1 identified by similarity to GB:AAA16194.1; match to protein family HMM PF02522; aminoglycoside 3-N-acetyltransferase 127961 aacC 423368000145 aacC Salmonella enterica subsp. enterica serovar Newport str. SL254 aminoglycoside 3-N-acetyltransferase YP_001102018.1 127059 D 423368 CDS YP_001102019.1 134047194 128168..128488 1 NC_009140.1 identified by similarity to SP:P31295; match to protein family HMM PF00166; molecular chaperone GroES 128488 groS 423368000146 groS Salmonella enterica subsp. enterica serovar Newport str. SL254 molecular chaperone GroES YP_001102019.1 128168 D 423368 CDS YP_001102020.1 134047129 128544..130181 1 NC_009140.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 130181 groEL 423368000147 groEL Salmonella enterica subsp. enterica serovar Newport str. SL254 molecular chaperone GroEL YP_001102020.1 128544 D 423368 CDS YP_001102021.1 134047141 130370..131899 1 NC_009140.1 identified by match to protein family HMM PF04986; transposase InsE 131899 insE 423368000148 insE Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsE YP_001102021.1 130370 D 423368 CDS YP_001102022.1 134047197 132167..133402 1 NC_009140.1 identified by match to protein family HMM PF00872; transposase InsF 133402 insF 423368000149 insF Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsF YP_001102022.1 132167 D 423368 CDS YP_001102023.1 134047106 133620..133967 1 NC_009140.1 identified by similarity to SP:P0AGC9; match to protein family HMM PF00893; quaternary ammonium compound-resistance protein QacEdelta1 133967 qacEdelta1 423368000150 qacEdelta1 Salmonella enterica subsp. enterica serovar Newport str. SL254 quaternary ammonium compound-resistance protein QacEdelta1 YP_001102023.1 133620 D 423368 CDS YP_001102024.1 134047234 133961..134800 1 NC_009140.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 134800 sul1 423368000151 sul1 Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydropteroate synthase YP_001102024.1 133961 D 423368 CDS YP_001102025.1 134047243 134928..135428 1 NC_009140.1 identified by similarity to GB:AAZ95875.1; match to protein family HMM PF00583; hypothetical protein 135428 423368000152 SNSL254_pSN254_0152 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102025.1 134928 D 423368 CDS YP_001102026.1 134047250 135452..135739 1 NC_009140.1 identified by similarity to GB:CAE50482.1; hypothetical protein 135739 423368000153 SNSL254_pSN254_0153 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102026.1 135452 D 423368 CDS YP_001102027.1 134047265 complement(135963..136745) 1 NC_009140.1 identified by match to protein family HMM PF01695; transposition protein IstB for insertion sequence IS1326 136745 istB 423368000154 istB Salmonella enterica subsp. enterica serovar Newport str. SL254 transposition protein IstB for insertion sequence IS1326 YP_001102027.1 135963 R 423368 CDS YP_001102028.1 134047140 complement(136735..138258) 1 NC_009140.1 identified by similarity to SP:Q46087; match to protein family HMM PF00665; transposase IstA for insertion sequence IS1326 138258 istA 423368000155 istA Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase IstA for insertion sequence IS1326 YP_001102028.1 136735 R 423368 CDS YP_001102029.1 134047184 138381..139925 1 NC_009140.1 identified by match to protein family HMM PF00665; match to protein family HMM PF01527; transposase InsG for insertion sequence IS1353 139925 insG 423368000156 insG Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsG for insertion sequence IS1353 YP_001102029.1 138381 D 423368 CDS YP_001102030.1 134047171 complement(139976..140836) 1 NC_009140.1 identified by match to protein family HMM PF05621; transposition protein TniB 140836 tniB 423368000157 tniB Salmonella enterica subsp. enterica serovar Newport str. SL254 transposition protein TniB YP_001102030.1 139976 R 423368 CDS YP_001102031.1 134047166 complement(141327..142049) 1 NC_009140.1 identified by match to protein family HMM PF00665; transposase InsB3 for insertion sequence IS26 142049 insB3 423368000159 insB3 Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsB3 for insertion sequence IS26 YP_001102031.1 141327 R 423368 CDS YP_001102032.1 134047196 complement(142094..142816) 1 NC_009140.1 identified by match to protein family HMM PF00665; transposase InsB4 for insertion sequence IS26 142816 insB4 423368000160 insB4 Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsB4 for insertion sequence IS26 YP_001102032.1 142094 R 423368 CDS YP_001102033.1 134047143 complement(143008..143997) 1 NC_009140.1 identified by match to protein family HMM PF00563; EAL domain-containing protein Urf2 143997 urf2 423368000161 urf2 Salmonella enterica subsp. enterica serovar Newport str. SL254 EAL domain-containing protein Urf2 YP_001102033.1 143008 R 423368 CDS YP_001102034.1 134047137 complement(143994..144230) 1 NC_009140.1 identified by match to protein family HMM PF05052; mercury resistance protein 144230 merE 423368000162 merE Salmonella enterica subsp. enterica serovar Newport str. SL254 mercury resistance protein YP_001102034.1 143994 R 423368 CDS YP_001102035.1 134047209 complement(144227..144592) 1 NC_009140.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR02054; MerD family transcriptional regulator 144592 merD 423368000163 merD Salmonella enterica subsp. enterica serovar Newport str. SL254 MerD family transcriptional regulator YP_001102035.1 144227 R 423368 CDS YP_001102036.1 134047271 complement(144704..145342) 1 NC_009140.1 cleaves the carbon-mercury bond of organomercuric compounds; alkylmercury lyase 145342 merB 423368000164 merB Salmonella enterica subsp. enterica serovar Newport str. SL254 alkylmercury lyase YP_001102036.1 144704 R 423368 CDS YP_001102037.1 134047172 complement(145357..147042) 1 NC_009140.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR02053; mercuric reductase 147042 merA 423368000165 merA Salmonella enterica subsp. enterica serovar Newport str. SL254 mercuric reductase YP_001102037.1 145357 R 423368 CDS YP_001102038.1 134047226 complement(147114..147389) 1 NC_009140.1 identified by match to protein family HMM PF00403; match to protein family HMM TIGR02052; mercuric transport protein periplasmic component MerP 147389 merP 423368000166 merP Salmonella enterica subsp. enterica serovar Newport str. SL254 mercuric transport protein periplasmic component MerP YP_001102038.1 147114 R 423368 CDS YP_001102039.1 134047116 complement(147405..147755) 1 NC_009140.1 identified by match to protein family HMM PF02411; mercuric transport protein 147755 merT 423368000167 merT Salmonella enterica subsp. enterica serovar Newport str. SL254 mercuric transport protein YP_001102039.1 147405 R 423368 CDS YP_001102040.1 134047227 147827..148261 1 NC_009140.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02051; transcriptional regulator MerR 148261 merR 423368000168 merR Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator MerR YP_001102040.1 147827 D 423368 CDS YP_001102041.1 134047142 148361..149365 1 NC_009140.1 identified by match to protein family HMM PF02371; transposase InsD2 for insertion sequence IS4321L 149365 insD2 423368000169 insD2 Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase InsD2 for insertion sequence IS4321L YP_001102041.1 148361 D 423368 CDS YP_001102042.1 134047138 149771..149887 1 NC_009140.1 hypothetical protein 149887 423368000170 SNSL254_pSN254_0170 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102042.1 149771 D 423368 CDS YP_001102043.1 134047217 149981..150382 1 NC_009140.1 hypothetical protein 150382 423368000171 SNSL254_pSN254_0171 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102043.1 149981 D 423368 CDS YP_001102044.1 134047115 150496..151221 1 NC_009140.1 identified by similarity to GB:AAL59702.1; hypothetical protein 151221 423368000172 SNSL254_pSN254_0172 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102044.1 150496 D 423368 CDS YP_001102045.1 134047119 151462..155607 1 NC_009140.1 identified by match to protein family HMM PF03527; match to protein family HMM PF05593; match to protein family HMM TIGR01643; Rhs family protein 155607 423368000173 SNSL254_pSN254_0173 Salmonella enterica subsp. enterica serovar Newport str. SL254 Rhs family protein YP_001102045.1 151462 D 423368 CDS YP_001102046.1 134047189 155597..156019 1 NC_009140.1 hypothetical protein 156019 423368000174 SNSL254_pSN254_0174 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102046.1 155597 D 423368 CDS YP_001102047.1 134047252 156454..156642 1 NC_009140.1 hypothetical protein 156642 423368000175 SNSL254_pSN254_0175 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102047.1 156454 D 423368 CDS YP_001102048.1 134047214 complement(156658..157260) 1 NC_009140.1 hypothetical protein 157260 423368000176 SNSL254_pSN254_0176 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102048.1 156658 R 423368 CDS YP_001102049.1 134047094 157530..157811 1 NC_009140.1 identified by similarity to GB:BAB93677.1; hypothetical protein 157811 423368000177 SNSL254_pSN254_0177 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102049.1 157530 D 423368 CDS YP_001102050.1 134047239 157830..158117 1 NC_009140.1 hypothetical protein 158117 423368000178 SNSL254_pSN254_0178 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102050.1 157830 D 423368 CDS YP_001102051.1 134047147 158110..158646 1 NC_009140.1 identified by similarity to GB:BAC41610.1; hypothetical protein 158646 423368000179 SNSL254_pSN254_0179 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102051.1 158110 D 423368 CDS YP_001102052.1 134047110 158649..159659 1 NC_009140.1 identified by match to protein family HMM PF00589; phage integrase 159659 423368000180 SNSL254_pSN254_0180 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage integrase YP_001102052.1 158649 D 423368 CDS YP_001102053.1 134047136 159664..160533 1 NC_009140.1 identified by match to protein family HMM PF00929; exonuclease 160533 423368000181 SNSL254_pSN254_0181 Salmonella enterica subsp. enterica serovar Newport str. SL254 exonuclease YP_001102053.1 159664 D 423368 CDS YP_001102054.1 134047233 160530..161021 1 NC_009140.1 identified by similarity to GB:BAB93565.1; hypothetical protein 161021 423368000182 SNSL254_pSN254_0182 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102054.1 160530 D 423368 CDS YP_001102055.1 134047095 161348..162223 1 NC_009140.1 binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 162223 423368000183 SNSL254_pSN254_0183 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA replication terminus site-binding protein YP_001102055.1 161348 D 423368 CDS YP_001102056.1 134047219 162385..163425 1 NC_009140.1 hypothetical protein 163425 423368000184 SNSL254_pSN254_0184 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102056.1 162385 D 423368 CDS YP_001102057.1 134047187 163425..163703 1 NC_009140.1 hypothetical protein 163703 423368000185 SNSL254_pSN254_0185 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102057.1 163425 D 423368 CDS YP_001102058.1 134047111 163712..165223 1 NC_009140.1 identified by similarity to GB:CAG73527.1; hypothetical protein 165223 423368000186 SNSL254_pSN254_0186 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102058.1 163712 D 423368 CDS YP_001102059.1 134047253 165346..166374 1 NC_009140.1 identified by match to protein family HMM TIGR02740; type IV conjugative transfer system protein TraF 166374 traF 423368000187 traF Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraF YP_001102059.1 165346 D 423368 CDS YP_001102060.1 134047117 166376..167809 1 NC_009140.1 identified by match to protein family HMM PF06122; type IV conjugative transfer system protein TraH 167809 traH 423368000188 traH Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraH YP_001102060.1 166376 D 423368 CDS YP_001102061.1 134047246 167822..171436 1 NC_009140.1 identified by match to protein family HMM PF07916; type IV conjugative transfer system protein TraG 171436 traG 423368000189 traG Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV conjugative transfer system protein TraG YP_001102061.1 167822 D 423368 CDS YP_001102062.1 134047240 complement(171474..171836) 1 NC_009140.1 hypothetical protein 171836 423368000190 SNSL254_pSN254_0190 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102062.1 171474 R 423368 CDS YP_001102063.1 134047185 172552..172824 1 NC_009140.1 identified by similarity to GB:AAQ94440.1; hypothetical protein 172824 423368000191 SNSL254_pSN254_0191 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102063.1 172552 D 423368 CDS YP_001102064.1 134047211 172824..173357 1 NC_009140.1 identified by match to protein family HMM PF01464; transglycosylase 173357 423368000192 SNSL254_pSN254_0192 Salmonella enterica subsp. enterica serovar Newport str. SL254 transglycosylase YP_001102064.1 172824 D 423368 CDS YP_001102065.1 134047245 173368..173976 1 NC_009140.1 hypothetical protein 173976 423368000193 SNSL254_pSN254_0193 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102065.1 173368 D 423368 CDS YP_001102066.1 134047181 173973..174257 1 NC_009140.1 hypothetical protein 174257 423368000194 SNSL254_pSN254_0194 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102066.1 173973 D 423368 CDS YP_001102067.1 134047120 complement(174583..175002) 1 NC_009140.1 hypothetical protein 175002 423368000196 SNSL254_pSN254_0196 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102067.1 174583 R 423368 CDS YP_001102068.1 134047222 complement(175004..175297) 1 NC_009140.1 hypothetical protein 175297 423368000197 SNSL254_pSN254_0197 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102068.1 175004 R 423368 CDS YP_001102069.1 134047108 complement(175314..176297) 1 NC_009140.1 identified by similarity to GB:AAL59744.1; hypothetical protein 176297 423368000198 SNSL254_pSN254_0198 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_001102069.1 175314 R 423368 CDS YP_002039226.1 194442200 complement(237..614) 1 NC_011079.1 identified by glimmer; putative; hypothetical protein 614 423368000199 SNSL254_B0001 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039226.1 237 R 423368 CDS YP_002039227.1 194442199 744..2276 1 NC_011079.1 hypothetical protein 2276 423368000200 SNSL254_B0002 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039227.1 744 D 423368 CDS YP_002039228.1 194442201 3182..3331 1 NC_011079.1 hypothetical protein 3331 423368000203 SNSL254_B0005 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039228.1 3182 D 423368 CDS YP_002039229.1 194446390 337..2799 1 NC_011080.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 2799 thrA 423368000204 thrA Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional aspartokinase I/homoserine dehydrogenase I YP_002039229.1 337 D 423368 CDS YP_002039230.1 194444692 2801..3730 1 NC_011080.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3730 thrB 423368000205 thrB Salmonella enterica subsp. enterica serovar Newport str. SL254 homoserine kinase YP_002039230.1 2801 D 423368 CDS YP_002039231.1 194444103 3734..5020 1 NC_011080.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 5020 thrC 423368000206 thrC Salmonella enterica subsp. enterica serovar Newport str. SL254 threonine synthase YP_002039231.1 3734 D 423368 CDS YP_002039232.1 194443561 complement(5114..5887) 1 NC_011080.1 identified by match to protein family HMM PF03883; hypothetical protein 5887 423368000207 SNSL254_A0005 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039232.1 5114 R 423368 CDS YP_002039233.1 194442782 complement(5966..7396) 1 NC_011080.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino-acid carrier protein AlsT 7396 423368000208 SNSL254_A0006 Salmonella enterica subsp. enterica serovar Newport str. SL254 amino-acid carrier protein AlsT YP_002039233.1 5966 R 423368 CDS YP_002039234.1 194442295 7665..8618 1 NC_011080.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase B 8618 tal2 423368000209 tal2 Salmonella enterica subsp. enterica serovar Newport str. SL254 transaldolase B YP_002039234.1 7665 D 423368 CDS YP_002039235.1 194446748 8729..9319 1 NC_011080.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 9319 mogA 423368000210 mogA Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdenum cofactor biosynthesis protein MogA YP_002039235.1 8729 D 423368 CDS YP_002039236.1 194446224 complement(9376..9942) 1 NC_011080.1 identified by match to protein family HMM PF01184; hypothetical protein 9942 423368000211 SNSL254_A0009 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039236.1 9376 R 423368 CDS YP_002039237.1 194445369 complement(10092..10805) 1 NC_011080.1 identified by match to protein family HMM PF03667; hypothetical protein 10805 423368000212 SNSL254_A0010 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039237.1 10092 R 423368 CDS YP_002039238.1 194444858 complement(10841..11245) 1 NC_011080.1 hypothetical protein 11245 423368000213 SNSL254_A0011 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039238.1 10841 R 423368 CDS YP_002039239.1 194445604 11300..11425 1 NC_011080.1 identified by glimmer; hypothetical protein 11425 423368000214 SNSL254_A0012 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039239.1 11300 D 423368 CDS YP_002039240.1 194444220 11594..13510 1 NC_011080.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 13510 dnaK 423368000215 dnaK Salmonella enterica subsp. enterica serovar Newport str. SL254 molecular chaperone DnaK YP_002039240.1 11594 D 423368 CDS YP_002039241.1 194443702 13596..14735 1 NC_011080.1 'chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion'; molecular chaperone DnaJ 14735 dnaJ 423368000216 dnaJ Salmonella enterica subsp. enterica serovar Newport str. SL254 molecular chaperone DnaJ YP_002039241.1 13596 D 423368 CDS YP_002039243.1 194445243 15020..15967 1 NC_011080.1 identified by match to protein family HMM PF00126; transcriptional regulator 15967 423368000217 SNSL254_A0016 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002039243.1 15020 D 423368 CDS YP_002039244.1 194442240 16136..16438 1 NC_011080.1 bacteriophage protein 16438 423368000218 SNSL254_A0017 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002039244.1 16136 D 423368 CDS YP_002039245.1 194446320 complement(16499..17020) 1 NC_011080.1 identified by match to protein family HMM PF05838; match to protein family HMM PF09374; hypothetical protein 17020 423368000219 SNSL254_A0018 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039245.1 16499 R 423368 CDS YP_002039246.1 194443995 complement(17037..17480) 1 NC_011080.1 hypothetical protein 17480 423368000220 SNSL254_A0019 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039246.1 17037 R 423368 CDS YP_002039247.1 194443256 17861..19960 1 NC_011080.1 identified by match to protein family HMM PF00704; match to protein family HMM PF02839; exochitinase 19960 423368000221 SNSL254_A0020 Salmonella enterica subsp. enterica serovar Newport str. SL254 exochitinase YP_002039247.1 17861 D 423368 CDS YP_002039248.1 194445060 20052..23048 1 NC_011080.1 hydroxymethyltransferase 23048 423368000222 SNSL254_A0021 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydroxymethyltransferase YP_002039248.1 20052 D 423368 CDS YP_002039249.1 194444266 23329..24033 1 NC_011080.1 hypothetical protein 24033 423368000223 SNSL254_A0022 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039249.1 23329 D 423368 CDS YP_002039250.1 194443119 24462..25004 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 25004 423368000224 SNSL254_A0023 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002039250.1 24462 D 423368 CDS YP_002039251.1 194443678 25105..25791 1 NC_011080.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 25791 423368000225 SNSL254_A0024 Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone protein FimC YP_002039251.1 25105 D 423368 CDS YP_002039252.1 194446095 25751..28417 1 NC_011080.1 identified by match to protein family HMM PF00577; outer membrane usher protein FimD 28417 423368000226 SNSL254_A0025 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane usher protein FimD YP_002039252.1 25751 D 423368 CDS YP_002039253.1 194446333 28418..29425 1 NC_011080.1 identified by match to protein family HMM PF00419; mannose binding protein FimH 29425 423368000227 SNSL254_A0026 Salmonella enterica subsp. enterica serovar Newport str. SL254 mannose binding protein FimH YP_002039253.1 28418 D 423368 CDS YP_002039254.1 194444519 29465..29971 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 29971 423368000228 SNSL254_A0027 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002039254.1 29465 D 423368 CDS YP_002039255.1 194445269 29987..30505 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 30505 423368000229 SNSL254_A0028 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002039255.1 29987 D 423368 CDS YP_002039256.1 194444078 30471..31202 1 NC_011080.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone 31202 423368000230 SNSL254_A0029 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial chaperone YP_002039256.1 30471 D 423368 CDS YP_002039257.1 194444351 31267..32112 1 NC_011080.1 identified by match to protein family HMM PF01323; hypothetical protein 32112 423368000231 SNSL254_A0030 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039257.1 31267 D 423368 CDS YP_002039258.1 194442512 32151..32438 1 NC_011080.1 hypothetical protein 32438 423368000232 SNSL254_A0031 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039258.1 32151 D 423368 CDS YP_002039259.1 194443097 complement(32538..32987) 1 NC_011080.1 hypothetical protein 32987 423368000233 SNSL254_A0032 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039259.1 32538 R 423368 CDS YP_002039260.1 194446304 33357..34361 1 NC_011080.1 identified by match to protein family HMM PF00126; transcriptional regulator 34361 423368000234 SNSL254_A0033 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002039260.1 33357 D 423368 CDS YP_008083612.1 513538136 complement(34369..34809) 1 NC_011080.1 hypothetical protein 34809 423368000235 SNSL254_A0034 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083612.1 34369 R 423368 CDS YP_002039262.1 194446355 35332..37050 1 NC_011080.1 identified by match to protein family HMM PF05935; arylsulfotransferase 37050 423368000236 SNSL254_A0036 Salmonella enterica subsp. enterica serovar Newport str. SL254 arylsulfotransferase YP_002039262.1 35332 D 423368 CDS YP_002039263.1 194444661 complement(37096..38658) 1 NC_011080.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 38658 423368000237 SNSL254_A0037 Salmonella enterica subsp. enterica serovar Newport str. SL254 5'-nucleotidase YP_002039263.1 37096 R 423368 CDS YP_002039264.1 194445358 complement(38766..39527) 1 NC_011080.1 identified by match to protein family HMM PF07135; hypothetical protein 39527 423368000238 SNSL254_A0038 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039264.1 38766 R 423368 CDS YP_002039265.1 194443287 40122..41615 1 NC_011080.1 identified by match to protein family HMM PF00884; sulfatase 41615 423368000239 SNSL254_A0039 Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfatase YP_002039265.1 40122 D 423368 CDS YP_002039266.1 194443637 41717..42904 1 NC_011080.1 identified by match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 42904 423368000240 SNSL254_A0040 Salmonella enterica subsp. enterica serovar Newport str. SL254 chondroitin sulfate/heparin utilization regulation protein YP_002039266.1 41717 D 423368 CDS YP_002039267.1 194445725 42929..44176 1 NC_011080.1 hypothetical protein 44176 423368000241 SNSL254_A0041 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039267.1 42929 D 423368 CDS YP_002039268.1 194446358 44303..46018 1 NC_011080.1 identified by match to protein family HMM PF05935; arylsulfotransferase 46018 423368000242 SNSL254_A0042 Salmonella enterica subsp. enterica serovar Newport str. SL254 arylsulfotransferase YP_002039268.1 44303 D 423368 CDS YP_002039269.1 194446207 46181..47347 1 NC_011080.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 47347 nhaA 423368000243 nhaA Salmonella enterica subsp. enterica serovar Newport str. SL254 pH-dependent sodium/proton antiporter YP_002039269.1 46181 D 423368 CDS YP_002039270.1 194443115 47415..48308 1 NC_011080.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 48308 nhaR 423368000244 nhaR Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional activator NhaR YP_002039270.1 47415 D 423368 CDS YP_002039271.1 194443677 complement(48363..50402) 1 NC_011080.1 identified by match to protein family HMM PF01055; glycoside hydrolase 50402 423368000245 SNSL254_A0045 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycoside hydrolase YP_002039271.1 48363 R 423368 CDS YP_002039272.1 194445592 complement(50442..51857) 1 NC_011080.1 identified by match to protein family HMM TIGR00792; xylose-proton symporter 51857 423368000246 SNSL254_A0046 Salmonella enterica subsp. enterica serovar Newport str. SL254 xylose-proton symporter YP_002039272.1 50442 R 423368 CDS YP_002039273.1 194444108 complement(52271..52534) 1 NC_011080.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 52534 rpsT 423368000247 rpsT Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S20 YP_002039273.1 52271 R 423368 CDS YP_002039274.1 194444305 52709..52855 1 NC_011080.1 hypothetical protein 52855 423368000248 SNSL254_A0048 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039274.1 52709 D 423368 CDS YP_002039275.1 194442807 52863..53801 1 NC_011080.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 53801 ribF 423368000249 ribF Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional riboflavin kinase/FMN adenylyltransferase YP_002039275.1 52863 D 423368 CDS YP_002039276.1 194442276 53810..56680 1 NC_011080.1 'IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme'; isoleucyl-tRNA synthetase 56680 ileS 423368000250 ileS Salmonella enterica subsp. enterica serovar Newport str. SL254 isoleucyl-tRNA synthetase YP_002039276.1 53810 D 423368 CDS YP_002039277.1 194446803 56680..57180 1 NC_011080.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 57180 lspA 423368000251 lspA Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein signal peptidase YP_002039277.1 56680 D 423368 CDS YP_002039278.1 194446160 57335..57784 1 NC_011080.1 identified by match to protein family HMM PF00254; FKBP-type peptidylprolyl isomerase 57784 fkpB 423368000252 fkpB Salmonella enterica subsp. enterica serovar Newport str. SL254 FKBP-type peptidylprolyl isomerase YP_002039278.1 57335 D 423368 CDS YP_002039279.1 194443769 57787..58737 1 NC_011080.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 58737 ispH 423368000253 ispH Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_002039279.1 57787 D 423368 CDS YP_002039280.1 194444262 complement(58849..59007) 1 NC_011080.1 identified by glimmer; hypothetical protein 59007 423368000254 SNSL254_A0055 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039280.1 58849 R 423368 CDS YP_002039281.1 194445334 58988..60139 1 NC_011080.1 nitrite reductase 60139 423368000255 SNSL254_A0054 Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrite reductase YP_002039281.1 58988 D 423368 CDS YP_002039282.1 194445788 60155..61075 1 NC_011080.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 61075 423368000256 SNSL254_A0056 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonucleoside hydrolase RihC YP_002039282.1 60155 D 423368 CDS YP_002039283.1 194446327 complement(61097..61783) 1 NC_011080.1 identified by match to protein family HMM PF00072; transcriptional regulator CitB 61783 423368000257 SNSL254_A0057 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator CitB YP_002039283.1 61097 R 423368 CDS YP_002039284.1 194442739 complement(61785..63443) 1 NC_011080.1 identified by match to protein family HMM PF02518; sensor kinase DpiB 63443 423368000258 SNSL254_A0058 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor kinase DpiB YP_002039284.1 61785 R 423368 CDS YP_002039285.1 194443227 complement(63539..64840) 1 NC_011080.1 identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta 64840 423368000259 SNSL254_A0059 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxaloacetate decarboxylase subunit beta YP_002039285.1 63539 R 423368 CDS YP_002039286.1 194443760 complement(64853..66628) 1 NC_011080.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 66628 oadA 423368000260 oadA Salmonella enterica subsp. enterica serovar Newport str. SL254 oxaloacetate decarboxylase YP_002039286.1 64853 R 423368 CDS YP_002039287.1 194444764 complement(66644..66883) 1 NC_011080.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 66883 423368000261 SNSL254_A0061 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxaloacetate decarboxylase subunit gamma YP_002039287.1 66644 R 423368 CDS YP_002039288.1 194445261 complement(67042..68382) 1 NC_011080.1 identified by match to protein family HMM PF03390; match to protein family HMM TIGR00783; citrate-sodium symporter 68382 423368000262 SNSL254_A0062 Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate-sodium symporter YP_002039288.1 67042 R 423368 CDS YP_002039289.1 194444878 68639..69670 1 NC_011080.1 identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase 69670 citC 423368000263 citC Salmonella enterica subsp. enterica serovar Newport str. SL254 [citrate (pro-3S)-lyase] ligase YP_002039289.1 68639 D 423368 CDS YP_002039290.1 194446729 69700..69993 1 NC_011080.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 69993 citD 423368000264 citD Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate lyase subunit gamma YP_002039290.1 69700 D 423368 CDS YP_002039291.1 194446194 69990..70859 1 NC_011080.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta 70859 citE 423368000265 citE Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate (pro-3S)-lyase subunit beta YP_002039291.1 69990 D 423368 CDS YP_002039292.1 194442210 70870..72390 1 NC_011080.1 identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha 72390 citF 423368000266 citF Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate lyase subunit alpha YP_002039292.1 70870 D 423368 CDS YP_002039293.1 194444126 72390..72941 1 NC_011080.1 identified by match to protein family HMM PF03802; match to protein family HMM TIGR03124; holo-ACP synthase CitX 72941 citX 423368000267 citX Salmonella enterica subsp. enterica serovar Newport str. SL254 holo-ACP synthase CitX YP_002039293.1 72390 D 423368 CDS YP_002039294.1 194443498 72919..73827 1 NC_011080.1 identified by match to protein family HMM PF01874; match to protein family HMM TIGR03125; triphosphoribosyl-dephospho-CoA synthase CitG 73827 citG 423368000268 citG Salmonella enterica subsp. enterica serovar Newport str. SL254 triphosphoribosyl-dephospho-CoA synthase CitG YP_002039294.1 72919 D 423368 CDS YP_002039295.1 194445308 74007..74828 1 NC_011080.1 'catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis'; dihydrodipicolinate reductase 74828 dapB 423368000269 dapB Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydrodipicolinate reductase YP_002039295.1 74007 D 423368 CDS YP_002039296.1 194444919 75690..76838 1 NC_011080.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 76838 carA 423368000270 carA Salmonella enterica subsp. enterica serovar Newport str. SL254 carbamoyl phosphate synthase small subunit YP_002039296.1 75690 D 423368 CDS YP_002039297.1 194446768 76857..80084 1 NC_011080.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 80084 carB 423368000271 carB Salmonella enterica subsp. enterica serovar Newport str. SL254 carbamoyl phosphate synthase large subunit YP_002039297.1 76857 D 423368 CDS YP_008083613.1 513538150 80358..80753 1 NC_011080.1 transcriptional activatory protein CaiF 80753 423368000272 SNSL254_A0072 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional activatory protein CaiF YP_008083613.1 80358 D 423368 CDS YP_002039298.1 194445217 complement(80831..81427) 1 NC_011080.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 81427 423368000273 SNSL254_A0073 Salmonella enterica subsp. enterica serovar Newport str. SL254 carnitine operon protein CaiE YP_002039298.1 80831 R 423368 CDS YP_002039299.1 194445453 complement(81537..82322) 1 NC_011080.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 82322 423368000274 SNSL254_A0074 Salmonella enterica subsp. enterica serovar Newport str. SL254 carnitinyl-CoA dehydratase YP_002039299.1 81537 R 423368 CDS YP_002039300.1 194443937 complement(82376..83929) 1 NC_011080.1 identified by match to protein family HMM PF00501; crotonobetaine/carnitine-CoA ligase 83929 caiC 423368000275 caiC Salmonella enterica subsp. enterica serovar Newport str. SL254 crotonobetaine/carnitine-CoA ligase YP_002039300.1 82376 R 423368 CDS YP_002039301.1 194442451 complement(83992..85263) 1 NC_011080.1 'catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine'; crotonobetainyl-CoA:carnitine CoA-transferase 85263 423368000276 SNSL254_A0076 Salmonella enterica subsp. enterica serovar Newport str. SL254 crotonobetainyl-CoA:carnitine CoA-transferase YP_002039301.1 83992 R 423368 CDS YP_002039302.1 194443251 complement(85321..86463) 1 NC_011080.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 86463 caiA 423368000277 caiA Salmonella enterica subsp. enterica serovar Newport str. SL254 crotonobetainyl-CoA dehydrogenase YP_002039302.1 85321 R 423368 CDS YP_002039303.1 194445728 complement(86498..88015) 1 NC_011080.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 88015 caiT 423368000278 caiT Salmonella enterica subsp. enterica serovar Newport str. SL254 L-carnitine/gamma-butyrobetaine antiporter YP_002039303.1 86498 R 423368 CDS YP_002039305.1 194445059 88243..88428 1 NC_011080.1 hypothetical protein 88428 423368000279 SNSL254_A0080 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039305.1 88243 D 423368 CDS YP_002039306.1 194443512 88496..89266 1 NC_011080.1 'required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase'; electron transfer flavoprotein FixA 89266 fixA 423368000280 fixA Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transfer flavoprotein FixA YP_002039306.1 88496 D 423368 CDS YP_002039307.1 194443704 89282..90223 1 NC_011080.1 involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 90223 fixB 423368000281 fixB Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transfer flavoprotein FixB YP_002039307.1 89282 D 423368 CDS YP_002039308.1 194444813 90273..91559 1 NC_011080.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 91559 fixC 423368000282 fixC Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase FixC YP_002039308.1 90273 D 423368 CDS YP_002039309.1 194445342 91556..91843 1 NC_011080.1 4Fe-4S ferredoxin 91843 423368000283 SNSL254_A0084 Salmonella enterica subsp. enterica serovar Newport str. SL254 4Fe-4S ferredoxin YP_002039309.1 91556 D 423368 CDS YP_002039310.1 194445455 91924..93330 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; metabolite transport protein YaaU 93330 423368000284 SNSL254_A0085 Salmonella enterica subsp. enterica serovar Newport str. SL254 metabolite transport protein YaaU YP_002039310.1 91924 D 423368 CDS YP_002039311.1 194444528 93419..93649 1 NC_011080.1 identified by match to protein family HMM PF06004; hypothetical protein 93649 423368000285 SNSL254_A0086 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039311.1 93419 D 423368 CDS YP_002039312.1 194444264 93943..94365 1 NC_011080.1 hypothetical protein 94365 423368000286 SNSL254_A0087 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039312.1 93943 D 423368 CDS YP_002039313.1 194443497 complement(94589..94879) 1 NC_011080.1 identified by match to protein family HMM PF07338; hypothetical protein 94879 423368000287 SNSL254_A0088 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039313.1 94589 R 423368 CDS YP_002039314.1 194442740 95777..97666 1 NC_011080.1 identified by match to protein family HMM PF00884; match to protein family HMM TIGR01409; sulfatase 97666 423368000288 SNSL254_A0089 Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfatase YP_002039314.1 95777 D 423368 CDS YP_002039315.1 194446537 98220..98750 1 NC_011080.1 'Required for full activity of KefC, a potassium-proton antiporter'; glutathione-regulated potassium-efflux system ancillary protein KefF 98750 kefF 423368000289 kefF Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione-regulated potassium-efflux system ancillary protein KefF YP_002039315.1 98220 D 423368 CDS YP_002039316.1 194446332 98743..100605 1 NC_011080.1 transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 100605 423368000290 SNSL254_A0091 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione-regulated potassium-efflux system protein KefC YP_002039316.1 98743 D 423368 CDS YP_002039317.1 194445577 100804..101283 1 NC_011080.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 101283 folA 423368000291 folA Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydrofolate reductase YP_002039317.1 100804 D 423368 CDS YP_002039318.1 194442603 complement(101389..102237) 1 NC_011080.1 'hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP'; diadenosine tetraphosphatase 102237 apaH 423368000292 apaH Salmonella enterica subsp. enterica serovar Newport str. SL254 diadenosine tetraphosphatase YP_002039318.1 101389 R 423368 CDS YP_002039319.1 194443063 complement(102248..102625) 1 NC_011080.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 102625 apaG 423368000293 apaG Salmonella enterica subsp. enterica serovar Newport str. SL254 ApaG protein YP_002039319.1 102248 R 423368 CDS YP_002039320.1 194446536 complement(102628..103449) 1 NC_011080.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 103449 ksgA 423368000294 ksgA Salmonella enterica subsp. enterica serovar Newport str. SL254 dimethyladenosine transferase YP_002039320.1 102628 R 423368 CDS YP_002039321.1 194446479 complement(103446..104435) 1 NC_011080.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 104435 pdxA 423368000295 pdxA Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxythreonine-4-phosphate dehydrogenase YP_002039321.1 103446 R 423368 CDS YP_002039322.1 194444526 complement(104435..105721) 1 NC_011080.1 'Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB'; peptidyl-prolyl cis-trans isomerase SurA 105721 surA 423368000296 surA Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidyl-prolyl cis-trans isomerase SurA YP_002039322.1 104435 R 423368 CDS YP_002039323.1 194445274 complement(105775..108135) 1 NC_011080.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 108135 imp 423368000297 imp Salmonella enterica subsp. enterica serovar Newport str. SL254 organic solvent tolerance protein YP_002039323.1 105775 R 423368 CDS YP_002039324.1 194444461 complement(108145..108306) 1 NC_011080.1 identified by glimmer; hypothetical protein 108306 423368000298 SNSL254_A0099 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039324.1 108145 R 423368 CDS YP_002039325.1 194442223 108389..109201 1 NC_011080.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 109201 djlA 423368000299 djlA Salmonella enterica subsp. enterica serovar Newport str. SL254 Dna-J like membrane chaperone protein YP_002039325.1 108389 D 423368 CDS YP_002039326.1 194443178 complement(109297..109956) 1 NC_011080.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A 109956 423368000300 SNSL254_A0101 Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA/tRNA pseudouridine synthase A YP_002039326.1 109297 R 423368 CDS YP_002039327.1 194446131 complement(109968..112874) 1 NC_011080.1 'transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA'; ATP-dependent helicase HepA 112874 rapA 423368000301 rapA Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent helicase HepA YP_002039327.1 109968 R 423368 CDS YP_002039328.1 194446652 complement(113048..115399) 1 NC_011080.1 'Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C'; DNA polymerase II 115399 423368000302 SNSL254_A0103 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase II YP_002039328.1 113048 R 423368 CDS YP_002039329.1 194446096 complement(115443..116063) 1 NC_011080.1 identified by match to protein family HMM PF02698; hypothetical protein 116063 423368000303 SNSL254_A0104 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039329.1 115443 R 423368 CDS YP_002039330.1 194444922 complement(116719..116982) 1 NC_011080.1 identified by glimmer; hypothetical protein 116982 423368000304 SNSL254_A0105 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039330.1 116719 R 423368 CDS YP_002039331.1 194443651 118795..119019 1 NC_011080.1 hypothetical protein 119019 423368000306 SNSL254_A0107 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039331.1 118795 D 423368 CDS YP_002039332.2 448967492 complement(119025..119720) 1 NC_011080.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 119720 araD 423368000307 araD Salmonella enterica subsp. enterica serovar Newport str. SL254 L-ribulose-5-phosphate 4-epimerase YP_002039332.2 119025 R 423368 CDS YP_002039333.1 194446528 complement(119861..121363) 1 NC_011080.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 121363 araA 423368000308 araA Salmonella enterica subsp. enterica serovar Newport str. SL254 L-arabinose isomerase YP_002039333.1 119861 R 423368 CDS YP_002039334.1 194445733 complement(121374..123083) 1 NC_011080.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 123083 araB 423368000309 araB Salmonella enterica subsp. enterica serovar Newport str. SL254 ribulokinase YP_002039334.1 121374 R 423368 CDS YP_002039335.1 194445205 123424..124269 1 NC_011080.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 124269 423368000310 SNSL254_A0111 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator AraC YP_002039335.1 123424 D 423368 CDS YP_002039336.1 194444593 124388..125155 1 NC_011080.1 identified by match to protein family HMM PF09335; hypothetical protein 125155 423368000311 SNSL254_A0112 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039336.1 124388 D 423368 CDS YP_002039337.1 194444261 complement(125194..125901) 1 NC_011080.1 with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit 125901 thiQ 423368000312 thiQ Salmonella enterica subsp. enterica serovar Newport str. SL254 thiamine transporter ATP-binding subunit YP_002039337.1 125194 R 423368 CDS YP_002039338.1 194442730 complement(125885..127495) 1 NC_011080.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 127495 thiP 423368000313 thiP Salmonella enterica subsp. enterica serovar Newport str. SL254 thiamine transporter membrane protein YP_002039338.1 125885 R 423368 CDS YP_002039339.1 194444243 complement(127471..128454) 1 NC_011080.1 part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 128454 tbpA 423368000314 tbpA Salmonella enterica subsp. enterica serovar Newport str. SL254 thiamine transporter substrate binding subunit YP_002039339.1 127471 R 423368 CDS YP_002039341.1 194442990 complement(128632..130290) 1 NC_011080.1 activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR 130290 sgrR 423368000315 sgrR Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator SgrR YP_002039341.1 128632 R 423368 CDS YP_002039343.1 194444357 complement(130840..131445) 1 NC_011080.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 131445 leuD 423368000317 leuD Salmonella enterica subsp. enterica serovar Newport str. SL254 isopropylmalate isomerase small subunit YP_002039343.1 130840 R 423368 CDS YP_002039344.1 194443917 complement(131456..132856) 1 NC_011080.1 'dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate'; isopropylmalate isomerase large subunit 132856 leuC 423368000318 leuC Salmonella enterica subsp. enterica serovar Newport str. SL254 isopropylmalate isomerase large subunit YP_002039344.1 131456 R 423368 CDS YP_002039345.1 194444403 complement(132859..133950) 1 NC_011080.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 133950 leuB 423368000319 leuB Salmonella enterica subsp. enterica serovar Newport str. SL254 3-isopropylmalate dehydrogenase YP_002039345.1 132859 R 423368 CDS YP_002039346.1 194444052 complement(133950..135521) 1 NC_011080.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 135521 leuA 423368000320 leuA Salmonella enterica subsp. enterica serovar Newport str. SL254 2-isopropylmalate synthase YP_002039346.1 133950 R 423368 CDS YP_002039347.1 194444092 136352..137296 1 NC_011080.1 activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 137296 leuO 423368000321 leuO Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine transcriptional activator YP_002039347.1 136352 D 423368 CDS YP_002039348.1 194444736 137588..139342 1 NC_011080.1 'catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive'; acetolactate synthase 3 catalytic subunit 139342 ilvB 423368000322 ilvB Salmonella enterica subsp. enterica serovar Newport str. SL254 acetolactate synthase 3 catalytic subunit YP_002039348.1 137588 D 423368 CDS YP_002039349.1 194443650 139342..139836 1 NC_011080.1 'with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit'; acetolactate synthase 3 regulatory subunit 139836 ilvH 423368000323 ilvH Salmonella enterica subsp. enterica serovar Newport str. SL254 acetolactate synthase 3 regulatory subunit YP_002039349.1 139342 D 423368 CDS YP_002039350.1 194444269 140120..141124 1 NC_011080.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 141124 fruR 423368000324 fruR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator FruR YP_002039350.1 140120 D 423368 CDS YP_002039351.1 194442600 141729..142187 1 NC_011080.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 142187 mraZ 423368000325 mraZ Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein MraZ YP_002039351.1 141729 D 423368 CDS YP_002039352.1 194443193 142189..143130 1 NC_011080.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 143130 mraW 423368000326 mraW Salmonella enterica subsp. enterica serovar Newport str. SL254 S-adenosyl-methyltransferase MraW YP_002039352.1 142189 D 423368 CDS YP_002039353.1 194446206 143127..143492 1 NC_011080.1 membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 143492 ftsL 423368000327 ftsL Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein FtsL YP_002039353.1 143127 D 423368 CDS YP_002039354.1 194446375 143508..145274 1 NC_011080.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI 145274 ftsI 423368000328 ftsI Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidoglycan synthetase FtsI YP_002039354.1 143508 D 423368 CDS YP_002039355.1 194443335 145261..146748 1 NC_011080.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 146748 murE 423368000329 murE Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_002039355.1 145261 D 423368 CDS YP_002039356.1 194444164 146745..148103 1 NC_011080.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 148103 murF 423368000330 murF Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_002039356.1 146745 D 423368 CDS YP_002039357.1 194442805 148097..149179 1 NC_011080.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 149179 mraY 423368000331 mraY Salmonella enterica subsp. enterica serovar Newport str. SL254 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002039357.1 148097 D 423368 CDS YP_002039358.1 194442341 149182..150498 1 NC_011080.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 150498 murD 423368000332 murD Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_002039358.1 149182 D 423368 CDS YP_002039359.1 194446027 150498..151742 1 NC_011080.1 integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 151742 ftsW 423368000333 ftsW Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein FtsW YP_002039359.1 150498 D 423368 CDS YP_002039360.1 194443313 151739..152806 1 NC_011080.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 152806 murG 423368000334 murG Salmonella enterica subsp. enterica serovar Newport str. SL254 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_002039360.1 151739 D 423368 CDS YP_002039361.1 194445444 152925..154400 1 NC_011080.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 154400 murC 423368000335 murC Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetylmuramate--L-alanine ligase YP_002039361.1 152925 D 423368 CDS YP_002039362.1 194444863 154393..155313 1 NC_011080.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 155313 ddl 423368000336 ddl Salmonella enterica subsp. enterica serovar Newport str. SL254 D-alanine--D-alanine ligase YP_002039362.1 154393 D 423368 CDS YP_002039363.1 194444111 155315..156145 1 NC_011080.1 involved in septum formation; cell division protein FtsQ 156145 ftsQ 423368000337 ftsQ Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein FtsQ YP_002039363.1 155315 D 423368 CDS YP_002039364.1 194443610 156142..157404 1 NC_011080.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 157404 ftsA 423368000338 ftsA Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein FtsA YP_002039364.1 156142 D 423368 CDS YP_002039365.1 194444484 157465..158616 1 NC_011080.1 'GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function'; cell division protein FtsZ 158616 ftsZ 423368000339 ftsZ Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein FtsZ YP_002039365.1 157465 D 423368 CDS YP_002039366.1 194442525 158717..159634 1 NC_011080.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 159634 lpxC 423368000340 lpxC Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_002039366.1 158717 D 423368 CDS YP_008083614.1 513538106 159912..160409 1 NC_011080.1 SecA regulator SecM 160409 secM 423368000341 secM Salmonella enterica subsp. enterica serovar Newport str. SL254 SecA regulator SecM YP_008083614.1 159912 D 423368 CDS YP_002039367.1 194443083 160471..163176 1 NC_011080.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 163176 secA 423368000342 secA Salmonella enterica subsp. enterica serovar Newport str. SL254 preprotein translocase subunit SecA YP_002039367.1 160471 D 423368 CDS YP_002039368.1 194445128 163327..163722 1 NC_011080.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; nucleoside triphosphate pyrophosphohydrolase 163722 423368000343 SNSL254_A0149 Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoside triphosphate pyrophosphohydrolase YP_002039368.1 163327 D 423368 CDS YP_002039369.1 194444623 complement(163756..163890) 1 NC_011080.1 aldo/keto reductase 163890 423368000344 SNSL254_A0150 Salmonella enterica subsp. enterica serovar Newport str. SL254 aldo/keto reductase YP_002039369.1 163756 R 423368 CDS YP_002039370.1 194444422 complement(164044..164235) 1 NC_011080.1 identified by match to protein family HMM PF03884; zinc-binding protein 164235 423368000345 SNSL254_A0151 Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc-binding protein YP_002039370.1 164044 R 423368 CDS YP_002039371.1 194443863 complement(164245..164988) 1 NC_011080.1 identified by match to protein family HMM PF07072; hypothetical protein 164988 423368000346 SNSL254_A0152 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039371.1 164245 R 423368 CDS YP_002039372.1 194443064 complement(164988..165608) 1 NC_011080.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 165608 coaE 423368000347 coaE Salmonella enterica subsp. enterica serovar Newport str. SL254 dephospho-CoA kinase YP_002039372.1 164988 R 423368 CDS YP_002039373.1 194443094 165834..166877 1 NC_011080.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 166877 guaC 423368000348 guaC Salmonella enterica subsp. enterica serovar Newport str. SL254 guanosine 5'-monophosphate oxidoreductase YP_002039373.1 165834 D 423368 CDS YP_002039374.1 194444325 complement(166908..168110) 1 NC_011080.1 identified by match to protein family HMM PF00482; type IV pilin biogenesis protein 168110 423368000349 SNSL254_A0155 Salmonella enterica subsp. enterica serovar Newport str. SL254 type IV pilin biogenesis protein YP_002039374.1 166908 R 423368 CDS YP_002039375.1 194443188 complement(168100..169485) 1 NC_011080.1 identified by match to protein family HMM PF00437; hypothetical protein 169485 423368000350 SNSL254_A0156 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039375.1 168100 R 423368 CDS YP_002039376.1 194442571 complement(169495..169932) 1 NC_011080.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; major pilin subunit 169932 423368000351 SNSL254_A0157 Salmonella enterica subsp. enterica serovar Newport str. SL254 major pilin subunit YP_002039376.1 169495 R 423368 CDS YP_002039377.1 194444228 complement(170154..171047) 1 NC_011080.1 'catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide'; quinolinate phosphoribosyltransferase 171047 nadC 423368000352 nadC Salmonella enterica subsp. enterica serovar Newport str. SL254 quinolinate phosphoribosyltransferase YP_002039377.1 170154 R 423368 CDS YP_002039378.1 194443693 171135..171698 1 NC_011080.1 identified by match to protein family HMM PF01510; N-acetyl-anhydromuranmyl-L-alanine amidase 171698 423368000353 SNSL254_A0159 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetyl-anhydromuranmyl-L-alanine amidase YP_002039378.1 171135 D 423368 CDS YP_002039379.1 194445301 171695..172549 1 NC_011080.1 involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 172549 423368000354 SNSL254_A0160 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein AmpE YP_002039379.1 171695 D 423368 CDS YP_002039380.1 194444745 complement(172641..173591) 1 NC_011080.1 identified by match to protein family HMM PF04616; alpha-N-arabinofuranosidase 173591 423368000355 SNSL254_A0161 Salmonella enterica subsp. enterica serovar Newport str. SL254 alpha-N-arabinofuranosidase YP_002039380.1 172641 R 423368 CDS YP_002039381.1 194446380 complement(173591..174997) 1 NC_011080.1 identified by match to protein family HMM TIGR00792; Na+/galactoside symporter 174997 423368000356 SNSL254_A0162 Salmonella enterica subsp. enterica serovar Newport str. SL254 Na+/galactoside symporter YP_002039381.1 173591 R 423368 CDS YP_002039382.1 194446153 complement(175161..176531) 1 NC_011080.1 identified by match to protein family HMM PF00324; aromatic amino acid transporter 176531 423368000357 SNSL254_A0163 Salmonella enterica subsp. enterica serovar Newport str. SL254 aromatic amino acid transporter YP_002039382.1 175161 R 423368 CDS YP_002039383.1 194442509 177097..177861 1 NC_011080.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 177861 pdhR 423368000358 pdhR Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator PdhR YP_002039383.1 177097 D 423368 CDS YP_002039384.1 194442514 178021..180684 1 NC_011080.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 180684 aceE 423368000359 aceE Salmonella enterica subsp. enterica serovar Newport str. SL254 pyruvate dehydrogenase subunit E1 YP_002039384.1 178021 D 423368 CDS YP_002039385.1 194444897 180699..182588 1 NC_011080.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 182588 aceF 423368000360 aceF Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydrolipoamide acetyltransferase YP_002039385.1 180699 D 423368 CDS YP_002039386.1 194445429 182790..184214 1 NC_011080.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 184214 lpdA 423368000361 lpdA Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydrolipoamide dehydrogenase YP_002039386.1 182790 D 423368 CDS YP_002039387.1 194443599 184292..184420 1 NC_011080.1 identified by glimmer; hypothetical protein 184420 423368000362 SNSL254_A0168 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039387.1 184292 D 423368 CDS YP_002039388.1 194444072 184503..184787 1 NC_011080.1 hypothetical protein 184787 423368000363 SNSL254_A0169 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039388.1 184503 D 423368 CDS YP_002039389.1 194443781 complement(184825..185616) 1 NC_011080.1 hypothetical protein 185616 423368000364 SNSL254_A0170 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039389.1 184825 R 423368 CDS YP_002039390.1 194445597 complement(185629..187254) 1 NC_011080.1 hypothetical protein 187254 423368000365 SNSL254_A0171 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039390.1 185629 R 423368 CDS YP_002039391.1 194445093 187643..190240 1 NC_011080.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 190240 acnB 423368000366 acnB Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_002039391.1 187643 D 423368 CDS YP_002039392.1 194446776 complement(190280..190744) 1 NC_011080.1 might be involved in hypersensitivity to nitrofurzone; inner membrane protein 190744 423368000367 SNSL254_A0173 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane protein YP_002039392.1 190280 R 423368 CDS YP_002039393.1 194445684 complement(191161..191484) 1 NC_011080.1 low molecular weight phosphotyrosine protein phosphatase 191484 423368000368 SNSL254_A0174 Salmonella enterica subsp. enterica serovar Newport str. SL254 low molecular weight phosphotyrosine protein phosphatase YP_002039393.1 191161 R 423368 CDS YP_002039394.1 194443951 191755..192117 1 NC_011080.1 identified by match to protein family HMM PF06062; hypothetical protein 192117 423368000369 SNSL254_A0175 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039394.1 191755 D 423368 CDS YP_002039395.1 194442946 192160..192273 1 NC_011080.1 identified by glimmer; hypothetical protein 192273 423368000370 SNSL254_A0176 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039395.1 192160 D 423368 CDS YP_002039396.2 448967493 192352..193305 1 NC_011080.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 193305 423368000371 SNSL254_A0177 Salmonella enterica subsp. enterica serovar Newport str. SL254 2-keto-3-deoxygluconate permease YP_002039396.2 192352 D 423368 CDS YP_002039397.1 194443947 193302..194573 1 NC_011080.1 identified by match to protein family HMM PF07005; hypothetical protein 194573 423368000372 SNSL254_A0178 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039397.1 193302 D 423368 CDS YP_002039398.1 194444572 194563..195546 1 NC_011080.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 195546 pdxA 423368000373 pdxA Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxythreonine-4-phosphate dehydrogenase YP_002039398.1 194563 D 423368 CDS YP_002039399.1 194445050 195556..196323 1 NC_011080.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 196323 423368000374 SNSL254_A0180 Salmonella enterica subsp. enterica serovar Newport str. SL254 DeoR family transcriptional regulator YP_002039399.1 195556 D 423368 CDS YP_002039400.1 194445698 complement(196353..197147) 1 NC_011080.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 197147 speD 423368000375 speD Salmonella enterica subsp. enterica serovar Newport str. SL254 S-adenosylmethionine decarboxylase YP_002039400.1 196353 R 423368 CDS YP_002039401.1 194446066 complement(197168..198028) 1 NC_011080.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 198028 speE 423368000376 speE Salmonella enterica subsp. enterica serovar Newport str. SL254 spermidine synthase YP_002039401.1 197168 R 423368 CDS YP_002039402.1 194446731 complement(198135..198482) 1 NC_011080.1 hypothetical protein 198482 423368000377 SNSL254_A0183 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039402.1 198135 R 423368 CDS YP_002039403.1 194443616 198684..200294 1 NC_011080.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 200294 423368000378 SNSL254_A0184 Salmonella enterica subsp. enterica serovar Newport str. SL254 multicopper oxidase YP_002039403.1 198684 D 423368 CDS YP_002039404.2 448967494 complement(200372..202762) 1 NC_011080.1 identified by match to protein family HMM PF01011; match to protein family HMM TIGR03074; quinoprotein glucose dehydrogenase 202762 gcd 423368000379 gcd Salmonella enterica subsp. enterica serovar Newport str. SL254 quinoprotein glucose dehydrogenase YP_002039404.2 200372 R 423368 CDS YP_002039405.1 194443622 202968..203504 1 NC_011080.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 203504 hpt 423368000380 hpt Salmonella enterica subsp. enterica serovar Newport str. SL254 hypoxanthine phosphoribosyltransferase YP_002039405.1 202968 D 423368 CDS YP_002039406.1 194445260 complement(203562..204224) 1 NC_011080.1 catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase 204224 423368000381 SNSL254_A0187 Salmonella enterica subsp. enterica serovar Newport str. SL254 carbonic anhydrase YP_002039406.1 203562 R 423368 CDS YP_002039407.1 194444904 204333..205259 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 205259 423368000382 SNSL254_A0188 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002039407.1 204333 D 423368 CDS YP_002039408.1 194446591 205256..206026 1 NC_011080.1 identified by match to protein family HMM PF01061; ABC transporter permease 206026 423368000383 SNSL254_A0189 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002039408.1 205256 D 423368 CDS YP_002039409.1 194445694 complement(206143..207222) 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial protein precurosr 207222 423368000384 SNSL254_A0190 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial protein precurosr YP_002039409.1 206143 R 423368 CDS YP_002039410.1 194446310 complement(207231..209777) 1 NC_011080.1 identified by match to protein family HMM PF00577; outer membrane usher protein FimD 209777 423368000385 SNSL254_A0191 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane usher protein FimD YP_002039410.1 207231 R 423368 CDS YP_002039411.1 194442367 complement(209804..210487) 1 NC_011080.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 210487 423368000386 SNSL254_A0192 Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone protein FimC YP_002039411.1 209804 R 423368 CDS YP_002039412.1 194444005 complement(210535..211074) 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 211074 423368000387 SNSL254_A0193 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002039412.1 210535 R 423368 CDS YP_002039413.1 194444659 complement(211289..211402) 1 NC_011080.1 identified by glimmer; hypothetical protein 211402 423368000388 SNSL254_A0194 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039413.1 211289 R 423368 CDS YP_002039414.1 194443994 211444..211884 1 NC_011080.1 identified by match to protein family HMM PF03610; PTS system transporter subunit IIA 211884 423368000389 SNSL254_A0195 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system transporter subunit IIA YP_002039414.1 211444 D 423368 CDS YP_002039415.1 194443969 211946..213175 1 NC_011080.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 213175 423368000390 SNSL254_A0196 Salmonella enterica subsp. enterica serovar Newport str. SL254 polysaccharide deacetylase YP_002039415.1 211946 D 423368 CDS YP_002039416.1 194443433 complement(213182..213562) 1 NC_011080.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 213562 panD 423368000391 panD Salmonella enterica subsp. enterica serovar Newport str. SL254 aspartate alpha-decarboxylase YP_002039416.1 213182 R 423368 CDS YP_002039417.1 194442904 complement(213657..214511) 1 NC_011080.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 214511 panC 423368000392 panC Salmonella enterica subsp. enterica serovar Newport str. SL254 pantoate--beta-alanine ligase YP_002039417.1 213657 R 423368 CDS YP_002039418.1 194442278 complement(214637..215428) 1 NC_011080.1 'catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate'; 3-methyl-2-oxobutanoate hydroxymethyltransferase 215428 panB 423368000393 panB Salmonella enterica subsp. enterica serovar Newport str. SL254 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002039418.1 214637 R 423368 CDS YP_002039419.1 194446701 complement(215549..216028) 1 NC_011080.1 'catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP'; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 216028 folK 423368000394 folK Salmonella enterica subsp. enterica serovar Newport str. SL254 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_002039419.1 215549 R 423368 CDS YP_002039420.2 448967495 complement(216025..217443) 1 NC_011080.1 Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase 217443 pcnB 423368000395 pcnB Salmonella enterica subsp. enterica serovar Newport str. SL254 poly(A) polymerase YP_002039420.2 216025 R 423368 CDS YP_002039421.1 194445400 complement(217584..218525) 1 NC_011080.1 'this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu'; glutamyl-Q tRNA(Asp) synthetase 218525 423368000396 SNSL254_A0202 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamyl-Q tRNA(Asp) synthetase YP_002039421.1 217584 R 423368 CDS YP_002039422.1 194444954 complement(218549..219004) 1 NC_011080.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420; RNA polymerase-binding transcription factor 219004 dksA 423368000397 dksA Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA polymerase-binding transcription factor YP_002039422.1 218549 R 423368 CDS YP_002039423.1 194444837 complement(219181..219885) 1 NC_011080.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 219885 sfsA 423368000398 sfsA Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar fermentation stimulation protein A YP_002039423.1 219181 R 423368 CDS YP_002039424.1 194443182 complement(219902..220432) 1 NC_011080.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 220432 423368000399 SNSL254_A0205 Salmonella enterica subsp. enterica serovar Newport str. SL254 2'-5' RNA ligase YP_002039424.1 219902 R 423368 CDS YP_002039425.1 194442804 220460..222934 1 NC_011080.1 similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 222934 hrpB 423368000400 hrpB Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent RNA helicase HrpB YP_002039425.1 220460 D 423368 CDS YP_002039426.1 194442340 223075..225597 1 NC_011080.1 'bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell'; penicillin-binding protein 1b 225597 mrcB 423368000401 mrcB Salmonella enterica subsp. enterica serovar Newport str. SL254 penicillin-binding protein 1b YP_002039426.1 223075 D 423368 CDS YP_002039427.1 194446710 complement(225736..225876) 1 NC_011080.1 identified by glimmer; hypothetical protein 225876 423368000402 SNSL254_A0208 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039427.1 225736 R 423368 CDS YP_002039428.2 448967496 225890..228079 1 NC_011080.1 involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 228079 fhuA 423368000403 fhuA Salmonella enterica subsp. enterica serovar Newport str. SL254 ferrichrome outer membrane transporter YP_002039428.2 225890 D 423368 CDS YP_002039429.1 194445770 228128..228925 1 NC_011080.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 228925 fhuC 423368000404 fhuC Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-hydroxamate transporter ATP-binding subunit YP_002039429.1 228128 D 423368 CDS YP_002039430.1 194445264 228925..229815 1 NC_011080.1 Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 229815 423368000405 SNSL254_A0211 Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-hydroxamate transporter substrate-binding subunit YP_002039430.1 228925 D 423368 CDS YP_002039431.1 194444741 229812..231869 1 NC_011080.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 231869 423368000406 SNSL254_A0212 Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-hydroxamate transporter permease subunit YP_002039431.1 229812 D 423368 CDS YP_002039432.1 194443658 231906..232112 1 NC_011080.1 identified by glimmer; hypothetical protein 232112 423368000407 SNSL254_A0213 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039432.1 231906 D 423368 CDS YP_002039433.1 194443670 complement(232273..232398) 1 NC_011080.1 identified by glimmer; hypothetical protein 232398 423368000408 SNSL254_A0214 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039433.1 232273 R 423368 CDS YP_002039434.1 194443665 232402..232593 1 NC_011080.1 identified by glimmer; hypothetical protein 232593 423368000409 SNSL254_A0215 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039434.1 232402 D 423368 CDS YP_002039435.1 194444316 232810..233370 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 233370 423368000410 SNSL254_A0216 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002039435.1 232810 D 423368 CDS YP_002039436.1 194442854 233456..236113 1 NC_011080.1 identified by match to protein family HMM PF00577; fimbrial usher protein 236113 423368000411 SNSL254_A0217 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial usher protein YP_002039436.1 233456 D 423368 CDS YP_002039437.1 194443324 236131..236883 1 NC_011080.1 identified by match to protein family HMM PF00345; chaperone protein PapD 236883 423368000412 SNSL254_A0218 Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone protein PapD YP_002039437.1 236131 D 423368 CDS YP_002039438.1 194444755 236902..237414 1 NC_011080.1 minor fimbrial subunit 237414 423368000413 SNSL254_A0219 Salmonella enterica subsp. enterica serovar Newport str. SL254 minor fimbrial subunit YP_002039438.1 236902 D 423368 CDS YP_002039439.1 194445266 237411..237887 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 237887 423368000414 SNSL254_A0220 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002039439.1 237411 D 423368 CDS YP_002039440.1 194443734 237887..238417 1 NC_011080.1 identified by match to protein family HMM PF00419; minor fimbrial subunit StfG 238417 423368000415 SNSL254_A0221 Salmonella enterica subsp. enterica serovar Newport str. SL254 minor fimbrial subunit StfG YP_002039440.1 237887 D 423368 CDS YP_002039441.1 194444241 238414..239262 1 NC_011080.1 hypothetical protein 239262 423368000416 SNSL254_A0222 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039441.1 238414 D 423368 CDS YP_002039442.1 194444494 complement(239370..240650) 1 NC_011080.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 240650 hemL 423368000417 hemL Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate-1-semialdehyde aminotransferase YP_002039442.1 239370 R 423368 CDS YP_002039443.1 194442592 240820..242241 1 NC_011080.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 242241 423368000418 SNSL254_A0224 Salmonella enterica subsp. enterica serovar Newport str. SL254 chloride channel protein YP_002039443.1 240820 D 423368 CDS YP_002039444.1 194442784 242323..242667 1 NC_011080.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 242667 yadR 423368000419 yadR Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-sulfur cluster insertion protein ErpA YP_002039444.1 242323 D 423368 CDS YP_002039445.1 194445879 complement(242768..243391) 1 NC_011080.1 identified by match to protein family HMM PF03458; hypothetical protein 243391 423368000420 SNSL254_A0226 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039445.1 242768 R 423368 CDS YP_002039446.1 194446798 complement(243428..244216) 1 NC_011080.1 solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF 244216 423368000421 SNSL254_A0227 Salmonella enterica subsp. enterica serovar Newport str. SL254 vitamin B12-transporter protein BtuF YP_002039446.1 243428 R 423368 CDS YP_002039447.1 194445000 complement(244221..244919) 1 NC_011080.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 244919 mtnN 423368000422 mtnN Salmonella enterica subsp. enterica serovar Newport str. SL254 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_002039447.1 244221 R 423368 CDS YP_002039448.1 194445486 244962..246521 1 NC_011080.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 246521 dgt 423368000423 dgt Salmonella enterica subsp. enterica serovar Newport str. SL254 deoxyguanosinetriphosphate triphosphohydrolase YP_002039448.1 244962 D 423368 CDS YP_002039449.1 194443684 246642..248078 1 NC_011080.1 protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 248078 degP 423368000424 degP Salmonella enterica subsp. enterica serovar Newport str. SL254 serine endoprotease YP_002039449.1 246642 D 423368 CDS YP_002039450.1 194443564 248231..249388 1 NC_011080.1 'regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization'; carbohydrate diacid transcriptional activator CdaR 249388 423368000425 SNSL254_A0231 Salmonella enterica subsp. enterica serovar Newport str. SL254 carbohydrate diacid transcriptional activator CdaR YP_002039450.1 248231 D 423368 CDS YP_002039451.1 194444128 complement(249477..249863) 1 NC_011080.1 hypothetical protein 249863 423368000426 SNSL254_A0232 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039451.1 249477 R 423368 CDS YP_002039452.1 194445883 250110..251411 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; shikimate transporter 251411 423368000427 SNSL254_A0233 Salmonella enterica subsp. enterica serovar Newport str. SL254 shikimate transporter YP_002039452.1 250110 D 423368 CDS YP_002039453.1 194446468 complement(251448..252272) 1 NC_011080.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 252272 dapD 423368000428 dapD Salmonella enterica subsp. enterica serovar Newport str. SL254 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_002039453.1 251448 R 423368 CDS YP_002039454.1 194443587 complement(252302..254974) 1 NC_011080.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 254974 glnD 423368000429 glnD Salmonella enterica subsp. enterica serovar Newport str. SL254 PII uridylyl-transferase YP_002039454.1 252302 R 423368 CDS YP_002039455.1 194443962 complement(255212..256006) 1 NC_011080.1 'catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn'; methionine aminopeptidase 256006 map 423368000430 map Salmonella enterica subsp. enterica serovar Newport str. SL254 methionine aminopeptidase YP_002039455.1 255212 R 423368 CDS YP_002039456.1 194442333 256456..257181 1 NC_011080.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 257181 rpsB 423368000432 rpsB Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S2 YP_002039456.1 256456 D 423368 CDS YP_002039457.1 194443244 257439..258290 1 NC_011080.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 258290 tsf 423368000433 tsf Salmonella enterica subsp. enterica serovar Newport str. SL254 elongation factor Ts YP_002039457.1 257439 D 423368 CDS YP_002039458.1 194444852 258435..259160 1 NC_011080.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 259160 pyrH 423368000434 pyrH Salmonella enterica subsp. enterica serovar Newport str. SL254 uridylate kinase YP_002039458.1 258435 D 423368 CDS YP_002039459.1 194445385 259307..259864 1 NC_011080.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 259864 frr 423368000435 frr Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosome recycling factor YP_002039459.1 259307 D 423368 CDS YP_002039460.2 448967497 260005..261201 1 NC_011080.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 261201 dxr 423368000436 dxr Salmonella enterica subsp. enterica serovar Newport str. SL254 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002039460.2 260005 D 423368 CDS YP_002039461.1 194446733 261514..262272 1 NC_011080.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 262272 uppS 423368000437 uppS Salmonella enterica subsp. enterica serovar Newport str. SL254 undecaprenyl pyrophosphate synthase YP_002039461.1 261514 D 423368 CDS YP_002039462.1 194443234 262285..263142 1 NC_011080.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 263142 cdsA 423368000438 cdsA Salmonella enterica subsp. enterica serovar Newport str. SL254 CDP-diglyceride synthase YP_002039462.1 262285 D 423368 CDS YP_002039463.1 194444218 263154..264506 1 NC_011080.1 catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 264506 rseP 423368000439 rseP Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc metallopeptidase RseP YP_002039463.1 263154 D 423368 CDS YP_002039464.1 194443720 264538..266970 1 NC_011080.1 'part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins'; outer membrane protein assembly factor YaeT 266970 yaeT 423368000440 yaeT Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein assembly factor YaeT YP_002039464.1 264538 D 423368 CDS YP_002039465.1 194444752 267093..267578 1 NC_011080.1 identified by match to protein family HMM PF03938; periplasmic chaperone 267578 skp 423368000441 skp Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic chaperone YP_002039465.1 267093 D 423368 CDS YP_002039466.1 194446270 267582..268607 1 NC_011080.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 268607 lpxD 423368000442 lpxD Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_002039466.1 267582 D 423368 CDS YP_002039467.1 194446275 268713..269168 1 NC_011080.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 269168 fabZ 423368000443 fabZ Salmonella enterica subsp. enterica serovar Newport str. SL254 (3R)-hydroxymyristoyl-ACP dehydratase YP_002039467.1 268713 D 423368 CDS YP_002039468.1 194445739 269172..269960 1 NC_011080.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 269960 lpxA 423368000444 lpxA Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetylglucosamine acyltransferase YP_002039468.1 269172 D 423368 CDS YP_002039469.1 194443198 269960..271108 1 NC_011080.1 'catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM'; lipid-A-disaccharide synthase 271108 lpxB 423368000445 lpxB Salmonella enterica subsp. enterica serovar Newport str. SL254 lipid-A-disaccharide synthase YP_002039469.1 269960 D 423368 CDS YP_002039470.1 194442556 271105..271701 1 NC_011080.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 271701 rnhB 423368000446 rnhB Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease HII YP_002039470.1 271105 D 423368 CDS YP_002039471.1 194445238 271725..275207 1 NC_011080.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 275207 dnaE 423368000447 dnaE Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase III subunit alpha YP_002039471.1 271725 D 423368 CDS YP_002039472.1 194444763 275220..276179 1 NC_011080.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 276179 accA 423368000448 accA Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_002039472.1 275220 D 423368 CDS YP_002039473.1 194443133 276359..278122 1 NC_011080.1 identified by match to protein family HMM PF00182; match to protein family HMM PF00801; endochitinase 278122 423368000449 SNSL254_A0255 Salmonella enterica subsp. enterica serovar Newport str. SL254 endochitinase YP_002039473.1 276359 D 423368 CDS YP_002039474.1 194442764 278198..280339 1 NC_011080.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 280339 423368000450 SNSL254_A0256 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysine decarboxylase, constitutive YP_002039474.1 278198 D 423368 CDS YP_002039475.1 194444278 280395..280784 1 NC_011080.1 identified by match to protein family HMM PF00903; hypothetical protein 280784 423368000451 SNSL254_A0257 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039475.1 280395 D 423368 CDS YP_002039476.1 194443631 280847..282139 1 NC_011080.1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 282139 tilS 423368000452 tilS Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA(Ile)-lysidine synthetase YP_002039476.1 280847 D 423368 CDS YP_002039477.2 448967498 complement(282223..282483) 1 NC_011080.1 identified by match to protein family HMM PF07073; Rho-binding antiterminator 282483 rof 423368000453 rof Salmonella enterica subsp. enterica serovar Newport str. SL254 Rho-binding antiterminator YP_002039477.2 282223 R 423368 CDS YP_002039478.1 194445341 complement(282470..282670) 1 NC_011080.1 identified by match to protein family HMM PF06786; hypothetical protein 282670 423368000454 SNSL254_A0260 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039478.1 282470 R 423368 CDS YP_002039479.1 194445048 282868..283413 1 NC_011080.1 identified by match to protein family HMM PF07152; hypothetical protein 283413 423368000455 SNSL254_A0261 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039479.1 282868 D 423368 CDS YP_002039480.1 194446732 283410..283832 1 NC_011080.1 identified by match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein 283832 423368000456 SNSL254_A0262 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidyl-tRNA hydrolase domain-containing protein YP_002039480.1 283410 D 423368 CDS YP_002039481.1 194446048 283864..284565 1 NC_011080.1 identified by match to protein family HMM PF04170; copper homeostasis and adhesion lipoprotein 284565 423368000457 SNSL254_A0263 Salmonella enterica subsp. enterica serovar Newport str. SL254 copper homeostasis and adhesion lipoprotein YP_002039481.1 283864 D 423368 CDS YP_002039482.1 194443070 complement(284639..286357) 1 NC_011080.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 286357 proS 423368000458 proS Salmonella enterica subsp. enterica serovar Newport str. SL254 prolyl-tRNA synthetase YP_002039482.1 284639 R 423368 CDS YP_002039483.1 194443910 complement(286468..287208) 1 NC_011080.1 identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104; hypothetical protein 287208 423368000459 SNSL254_A0265 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039483.1 286468 R 423368 CDS YP_002039484.1 194444394 complement(287172..287576) 1 NC_011080.1 outer membrane lipoprotein 287576 rcsF 423368000460 rcsF Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein YP_002039484.1 287172 R 423368 CDS YP_002039485.1 194444076 complement(287695..288510) 1 NC_011080.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; DL-methionine transporter substrate-binding subunit 288510 metQ 423368000461 metQ Salmonella enterica subsp. enterica serovar Newport str. SL254 DL-methionine transporter substrate-binding subunit YP_002039485.1 287695 R 423368 CDS YP_002039486.1 194444542 complement(288549..289202) 1 NC_011080.1 part of the MetNIQ methionine uptake system; DL-methionine transporter permease 289202 metI 423368000462 metI Salmonella enterica subsp. enterica serovar Newport str. SL254 DL-methionine transporter permease YP_002039486.1 288549 R 423368 CDS YP_002039487.1 194445458 complement(289195..290226) 1 NC_011080.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 290226 metN 423368000463 metN Salmonella enterica subsp. enterica serovar Newport str. SL254 DL-methionine transporter ATP-binding subunit YP_002039487.1 289195 R 423368 CDS YP_002039488.1 194446119 290416..290982 1 NC_011080.1 'Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate'; D,D-heptose 1,7-bisphosphate phosphatase 290982 423368000464 SNSL254_A0270 Salmonella enterica subsp. enterica serovar Newport str. SL254 D,D-heptose 1,7-bisphosphate phosphatase YP_002039488.1 290416 D 423368 CDS YP_002039489.1 194442602 297028..297852 1 NC_011080.1 'catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid'; 2,5-diketo-D-gluconate reductase B 297852 dkgB 423368000471 dkgB Salmonella enterica subsp. enterica serovar Newport str. SL254 2,5-diketo-D-gluconate reductase B YP_002039489.1 297028 D 423368 CDS YP_002039490.1 194443748 complement(297873..298787) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 298787 423368000472 SNSL254_A0281 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR substrate binding domain-containing protein YP_002039490.1 297873 R 423368 CDS YP_002039491.1 194444274 298892..300067 1 NC_011080.1 identified by match to protein family HMM PF07690; inner membrane transport protein YdhP 300067 423368000473 SNSL254_A0282 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport protein YdhP YP_002039491.1 298892 D 423368 CDS YP_002039492.1 194442759 300199..300999 1 NC_011080.1 identified by match to protein family HMM PF03372; hypothetical protein 300999 423368000474 SNSL254_A0283 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039492.1 300199 D 423368 CDS YP_002039493.1 194443197 301077..301847 1 NC_011080.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; UbiE/COQ5 family methyltransferase 301847 423368000475 SNSL254_A0284 Salmonella enterica subsp. enterica serovar Newport str. SL254 UbiE/COQ5 family methyltransferase YP_002039493.1 301077 D 423368 CDS YP_002039494.2 448967499 complement(301903..303270) 1 NC_011080.1 'catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall'; membrane-bound lytic murein transglycosylase D 303270 mltD 423368000476 mltD Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane-bound lytic murein transglycosylase D YP_002039494.2 301903 R 423368 CDS YP_002039495.1 194444358 complement(303342..304097) 1 NC_011080.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase 304097 gloB 423368000477 gloB Salmonella enterica subsp. enterica serovar Newport str. SL254 hydroxyacylglutathione hydrolase YP_002039495.1 303342 R 423368 CDS YP_002039496.1 194443090 304132..304854 1 NC_011080.1 identified by match to protein family HMM PF08241; methyltransferase 304854 423368000478 SNSL254_A0287 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyltransferase YP_002039496.1 304132 D 423368 CDS YP_002039497.1 194442619 complement(304851..305318) 1 NC_011080.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 305318 rnhA 423368000479 rnhA Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease H YP_002039497.1 304851 R 423368 CDS YP_002039498.1 194445947 305373..306113 1 NC_011080.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 306113 dnaQ 423368000480 dnaQ Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase III subunit epsilon YP_002039498.1 305373 D 423368 CDS YP_002039499.1 194446459 complement(306645..307694) 1 NC_011080.1 identified by match to protein family HMM PF06812; ImpA-related N- family protein 307694 423368000482 SNSL254_A0291 Salmonella enterica subsp. enterica serovar Newport str. SL254 ImpA-related N- family protein YP_002039499.1 306645 R 423368 CDS YP_002039500.1 194444207 complement(307711..308706) 1 NC_011080.1 identified by match to protein family HMM PF06996; match to protein family HMM TIGR03347; type VI secretion protein 308706 423368000483 SNSL254_A0292 Salmonella enterica subsp. enterica serovar Newport str. SL254 type VI secretion protein YP_002039500.1 307711 R 423368 CDS YP_002039501.1 194443419 complement(308703..310586) 1 NC_011080.1 identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359; type VI secretion protein 310586 vasA 423368000484 vasA Salmonella enterica subsp. enterica serovar Newport str. SL254 type VI secretion protein YP_002039501.1 308703 R 423368 CDS YP_002039502.1 194445579 complement(310602..311096) 1 NC_011080.1 identified by match to protein family HMM PF04965; match to protein family HMM TIGR03357; type VI secretion system lysozyme-like protein 311096 423368000485 SNSL254_A0294 Salmonella enterica subsp. enterica serovar Newport str. SL254 type VI secretion system lysozyme-like protein YP_002039502.1 310602 R 423368 CDS YP_002039503.1 194445082 complement(311093..311917) 1 NC_011080.1 identified by match to protein family HMM PF07024; SciE protein 311917 423368000486 SNSL254_A0295 Salmonella enterica subsp. enterica serovar Newport str. SL254 SciE protein YP_002039503.1 311093 R 423368 CDS YP_002039504.1 194446571 complement(311904..312806) 1 NC_011080.1 hypothetical protein 312806 423368000487 SNSL254_A0296 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039504.1 311904 R 423368 CDS YP_002039505.1 194446081 complement(312883..313014) 1 NC_011080.1 identified by glimmer; hypothetical protein 313014 423368000488 SNSL254_A0297 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039505.1 312883 R 423368 CDS YP_002039506.1 194445862 313174..315813 1 NC_011080.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345; ClpV1 family type VI secretion ATPase 315813 clpV 423368000489 clpV Salmonella enterica subsp. enterica serovar Newport str. SL254 ClpV1 family type VI secretion ATPase YP_002039506.1 313174 D 423368 CDS YP_002039507.1 194442796 315913..316455 1 NC_011080.1 identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358; type VI secretion protein 316455 423368000490 SNSL254_A0299 Salmonella enterica subsp. enterica serovar Newport str. SL254 type VI secretion protein YP_002039507.1 315913 D 423368 CDS YP_002039508.1 194442296 316479..317987 1 NC_011080.1 identified by match to protein family HMM PF05943; match to protein family HMM TIGR03355; EvpB family type VI secretion protein 317987 423368000491 SNSL254_A0300 Salmonella enterica subsp. enterica serovar Newport str. SL254 EvpB family type VI secretion protein YP_002039508.1 316479 D 423368 CDS YP_002039509.1 194444424 318413..318838 1 NC_011080.1 hypothetical protein 318838 423368000492 SNSL254_A0301 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039509.1 318413 D 423368 CDS YP_002039510.1 194442474 319075..319560 1 NC_011080.1 identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hemolysin-coregulated protein 319560 423368000493 SNSL254_A0302 Salmonella enterica subsp. enterica serovar Newport str. SL254 hemolysin-coregulated protein YP_002039510.1 319075 D 423368 CDS YP_002039511.1 194442957 319863..320348 1 NC_011080.1 hypothetical protein 320348 423368000494 SNSL254_A0303 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039511.1 319863 D 423368 CDS YP_002039512.1 194443478 320384..320716 1 NC_011080.1 hypothetical protein 320716 423368000495 SNSL254_A0304 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039512.1 320384 D 423368 CDS YP_002039513.1 194443822 320859..321344 1 NC_011080.1 identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hemolysin-coregulated protein 321344 423368000496 SNSL254_A0305 Salmonella enterica subsp. enterica serovar Newport str. SL254 hemolysin-coregulated protein YP_002039513.1 320859 D 423368 CDS YP_002039514.2 448967500 321348..321947 1 NC_011080.1 identified by match to protein family HMM TIGR03352; type VI secretion lipoprotein 321947 423368000497 SNSL254_A0306 Salmonella enterica subsp. enterica serovar Newport str. SL254 type VI secretion lipoprotein YP_002039514.2 321348 D 423368 CDS YP_002039515.1 194444887 321951..323294 1 NC_011080.1 identified by match to protein family HMM PF05936; match to protein family HMM TIGR03353; type VI secretion protein 323294 423368000498 SNSL254_A0307 Salmonella enterica subsp. enterica serovar Newport str. SL254 type VI secretion protein YP_002039515.1 321951 D 423368 CDS YP_002039516.1 194443139 323291..324595 1 NC_011080.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350; hypothetical protein 324595 423368000499 SNSL254_A0308 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039516.1 323291 D 423368 CDS YP_002039517.1 194445934 324600..325373 1 NC_011080.1 hypothetical protein 325373 423368000500 SNSL254_A0309 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039517.1 324600 D 423368 CDS YP_002039518.2 448967501 325563..326006 1 NC_011080.1 Shiga-like toxin A subunit 326006 423368000501 SNSL254_A0310 Salmonella enterica subsp. enterica serovar Newport str. SL254 Shiga-like toxin A subunit YP_002039518.2 325563 D 423368 CDS YP_002039519.1 194442352 326040..329909 1 NC_011080.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348; type VI secretion protein IcmF 329909 icmF 423368000502 icmF Salmonella enterica subsp. enterica serovar Newport str. SL254 type VI secretion protein IcmF YP_002039519.1 326040 D 423368 CDS YP_002039520.1 194443833 329909..330676 1 NC_011080.1 hypothetical protein 330676 423368000503 SNSL254_A0312 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039520.1 329909 D 423368 CDS YP_002039521.1 194444482 331279..331635 1 NC_011080.1 hypothetical protein 331635 423368000504 SNSL254_A0313 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039521.1 331279 D 423368 CDS YP_002039522.1 194444504 331644..331766 1 NC_011080.1 hypothetical protein 331766 423368000505 SNSL254_A0314 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039522.1 331644 D 423368 CDS YP_002039523.1 194445158 331793..332179 1 NC_011080.1 hypothetical protein 332179 423368000506 SNSL254_A0315 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039523.1 331793 D 423368 CDS YP_002039524.1 194445674 332602..332724 1 NC_011080.1 hypothetical protein 332724 423368000508 SNSL254_A0317 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039524.1 332602 D 423368 CDS YP_002039525.1 194442538 332866..333075 1 NC_011080.1 identified by glimmer; hypothetical protein 333075 423368000509 SNSL254_A0318 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039525.1 332866 D 423368 CDS YP_002039526.1 194442493 333121..335310 1 NC_011080.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361; Rhs family protein 335310 423368000510 SNSL254_A0319 Salmonella enterica subsp. enterica serovar Newport str. SL254 Rhs family protein YP_002039526.1 333121 D 423368 CDS YP_002039527.1 194445631 335334..335780 1 NC_011080.1 identified by match to protein family HMM PF08786; hypothetical protein 335780 423368000511 SNSL254_A0320 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039527.1 335334 D 423368 CDS YP_002039528.1 194443828 335799..339878 1 NC_011080.1 identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643; Rhs family protein 339878 423368000512 SNSL254_A0321 Salmonella enterica subsp. enterica serovar Newport str. SL254 Rhs family protein YP_002039528.1 335799 D 423368 CDS YP_002039529.1 194446544 339872..340318 1 NC_011080.1 hypothetical protein 340318 423368000513 SNSL254_A0322 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039529.1 339872 D 423368 CDS YP_002039530.1 194445539 340704..340844 1 NC_011080.1 identified by glimmer; hypothetical protein 340844 423368000514 SNSL254_A0323 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039530.1 340704 D 423368 CDS YP_002039531.1 194443711 340837..341319 1 NC_011080.1 phosphotriesterase 341319 423368000515 SNSL254_A0324 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphotriesterase YP_002039531.1 340837 D 423368 CDS YP_002039532.1 194443943 complement(341372..341647) 1 NC_011080.1 identified by match to protein family HMM PF08845; hypothetical protein 341647 423368000516 SNSL254_A0325 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039532.1 341372 R 423368 CDS YP_002039533.1 194442751 341709..341828 1 NC_011080.1 identified by glimmer; hypothetical protein 341828 423368000517 SNSL254_A0326 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039533.1 341709 D 423368 CDS YP_002039534.1 194445829 342275..342415 1 NC_011080.1 rhs core protein with extension 342415 423368000518 SNSL254_A0327 Salmonella enterica subsp. enterica serovar Newport str. SL254 rhs core protein with extension YP_002039534.1 342275 D 423368 CDS YP_002039535.1 194446282 343087..343554 1 NC_011080.1 hypothetical protein 343554 423368000519 SNSL254_A0328 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039535.1 343087 D 423368 CDS YP_002039536.1 194443701 344172..344330 1 NC_011080.1 identified by glimmer; hypothetical protein 344330 423368000521 SNSL254_A0330 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039536.1 344172 D 423368 CDS YP_002039537.1 194446463 complement(344662..344802) 1 NC_011080.1 hypothetical protein 344802 423368000523 SNSL254_A0332 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039537.1 344662 R 423368 CDS YP_002039538.1 194445214 346035..346166 1 NC_011080.1 identified by glimmer; hypothetical protein 346166 423368000525 SNSL254_A0334 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039538.1 346035 D 423368 CDS YP_002039540.2 291080897 346737..347234 1 NC_011080.1 saf-pilin pilus formation protein 347234 423368000526 SNSL254_A0336 Salmonella enterica subsp. enterica serovar Newport str. SL254 saf-pilin pilus formation protein YP_002039540.2 346737 D 423368 CDS YP_002039541.1 194443051 347309..348049 1 NC_011080.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; periplasmic fimbrial chaperone protein 348049 423368000527 SNSL254_A0337 Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic fimbrial chaperone protein YP_002039541.1 347309 D 423368 CDS YP_002039542.1 194446016 348073..350583 1 NC_011080.1 identified by match to protein family HMM PF00577; outer-membrane fimbrial usher protein 350583 423368000528 SNSL254_A0338 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer-membrane fimbrial usher protein YP_002039542.1 348073 D 423368 CDS YP_002039543.1 194446338 350605..351075 1 NC_011080.1 identified by match to protein family HMM PF05775; fimbrial structural subunit 351075 423368000529 SNSL254_A0339 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial structural subunit YP_002039543.1 350605 D 423368 CDS YP_002039544.1 194444657 351483..352304 1 NC_011080.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 352304 423368000530 SNSL254_A0340 Salmonella enterica subsp. enterica serovar Newport str. SL254 polysaccharide deacetylase YP_002039544.1 351483 D 423368 CDS YP_002039545.1 194443843 352787..352918 1 NC_011080.1 hypothetical protein 352918 423368000531 SNSL254_A0341 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039545.1 352787 D 423368 CDS YP_002039546.1 194445654 353121..354068 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator SinR 354068 423368000532 SNSL254_A0342 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator SinR YP_002039546.1 353121 D 423368 CDS YP_002039547.1 194445330 354188..354403 1 NC_011080.1 hypothetical protein 354403 423368000533 SNSL254_A0343 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039547.1 354188 D 423368 CDS YP_002039548.1 194444662 complement(354407..355126) 1 NC_011080.1 adhesin 355126 423368000534 SNSL254_A0344 Salmonella enterica subsp. enterica serovar Newport str. SL254 adhesin YP_002039548.1 354407 R 423368 CDS YP_002039549.1 194443669 complement(355151..355279) 1 NC_011080.1 identified by glimmer; hypothetical protein 355279 423368000535 SNSL254_A0345 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039549.1 355151 R 423368 CDS YP_002039550.1 194443298 complement(355457..355864) 1 NC_011080.1 identified by match to protein family HMM PF07813; hypothetical protein 355864 423368000536 SNSL254_A0346 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039550.1 355457 R 423368 CDS YP_002039551.1 194442666 complement(356174..356941) 1 NC_011080.1 identified by match to protein family HMM PF00795; hypothetical protein 356941 423368000537 SNSL254_A0347 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039551.1 356174 R 423368 CDS YP_008083615.1 513538137 complement(357050..359494) 1 NC_011080.1 acyl-coenzyme A dehydrogenase 359494 fadE 423368000538 fadE Salmonella enterica subsp. enterica serovar Newport str. SL254 acyl-coenzyme A dehydrogenase YP_008083615.1 357050 R 423368 CDS YP_002039552.1 194445657 359734..360312 1 NC_011080.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 360312 gmhA 423368000539 gmhA Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoheptose isomerase YP_002039552.1 359734 D 423368 CDS YP_002039553.1 194444333 360525..361292 1 NC_011080.1 identified by match to protein family HMM PF00310; glutamine amidotransferase, class-II 361292 423368000540 SNSL254_A0350 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamine amidotransferase, class-II YP_002039553.1 360525 D 423368 CDS YP_002039554.1 194445276 complement(361263..362003) 1 NC_011080.1 identified by match to protein family HMM PF06104; hypothetical protein 362003 423368000541 SNSL254_A0351 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039554.1 361263 R 423368 CDS YP_002039555.1 194442660 362253..363308 1 NC_011080.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 363308 dinB 423368000542 dinB Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase IV YP_002039555.1 362253 D 423368 CDS YP_002039556.1 194443257 363527..364666 1 NC_011080.1 mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein 364666 423368000543 SNSL254_A0353 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039556.1 363527 D 423368 CDS YP_002039557.1 194443695 364663..365277 1 NC_011080.1 similar to release factor 1 and 2; peptide chain release factor-like protein 365277 prfH 423368000544 prfH Salmonella enterica subsp. enterica serovar Newport str. SL254 peptide chain release factor-like protein YP_002039557.1 364663 D 423368 CDS YP_002039558.1 194444329 complement(365433..366890) 1 NC_011080.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 366890 pepD 423368000545 pepD Salmonella enterica subsp. enterica serovar Newport str. SL254 aminoacyl-histidine dipeptidase YP_002039558.1 365433 R 423368 CDS YP_002039559.1 194444683 367139..367597 1 NC_011080.1 'catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively'; xanthine-guanine phosphoribosyltransferase 367597 gpt 423368000546 gpt Salmonella enterica subsp. enterica serovar Newport str. SL254 xanthine-guanine phosphoribosyltransferase YP_002039559.1 367139 D 423368 CDS YP_002039560.1 194445109 367686..368930 1 NC_011080.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 368930 frsA 423368000547 frsA Salmonella enterica subsp. enterica serovar Newport str. SL254 fermentation/respiration switch protein YP_002039560.1 367686 D 423368 CDS YP_002039561.1 194445744 368988..369389 1 NC_011080.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 369389 423368000548 SNSL254_A0358 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator Crl YP_002039561.1 368988 D 423368 CDS YP_002039562.1 194446132 complement(369440..370492) 1 NC_011080.1 identified by match to protein family HMM PF00267; outer membrane phosphoporin protein E 370492 423368000549 SNSL254_A0360 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane phosphoporin protein E YP_002039562.1 369440 R 423368 CDS YP_002039564.1 194446813 complement(370558..370710) 1 NC_011080.1 hypothetical protein 370710 423368000550 SNSL254_A0361 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039564.1 370558 R 423368 CDS YP_002039565.1 194443025 370775..371878 1 NC_011080.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 371878 proB 423368000551 proB Salmonella enterica subsp. enterica serovar Newport str. SL254 gamma-glutamyl kinase YP_002039565.1 370775 D 423368 CDS YP_002039566.1 194443082 371890..373140 1 NC_011080.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 373140 proA 423368000552 proA Salmonella enterica subsp. enterica serovar Newport str. SL254 gamma-glutamyl phosphate reductase YP_002039566.1 371890 D 423368 CDS YP_002039567.1 194446639 375295..375522 1 NC_011080.1 hypothetical protein 375522 423368000556 SNSL254_A0368 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039567.1 375295 D 423368 CDS YP_002039568.2 448967502 375764..377101 1 NC_011080.1 identified by match to protein family HMM PF07690; permease 377101 423368000557 SNSL254_A0369 Salmonella enterica subsp. enterica serovar Newport str. SL254 permease YP_002039568.2 375764 D 423368 CDS YP_002039569.1 194442218 377233..378654 1 NC_011080.1 'dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate'; isopropylmalate isomerase large subunit 378654 leuC 423368000558 leuC Salmonella enterica subsp. enterica serovar Newport str. SL254 isopropylmalate isomerase large subunit YP_002039569.1 377233 D 423368 CDS YP_002039570.1 194444157 378656..379282 1 NC_011080.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171; 3-isopropylmalate dehydratase small subunit 379282 leuD 423368000559 leuD Salmonella enterica subsp. enterica serovar Newport str. SL254 3-isopropylmalate dehydratase small subunit YP_002039570.1 378656 D 423368 CDS YP_002039571.1 194445346 379297..380175 1 NC_011080.1 identified by match to protein family HMM PF01557; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 380175 423368000560 SNSL254_A0372 Salmonella enterica subsp. enterica serovar Newport str. SL254 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_002039571.1 379297 D 423368 CDS YP_002039572.1 194443448 380175..381089 1 NC_011080.1 identified by match to protein family HMM PF00561; haloacetate dehalogenase H-1 381089 423368000561 SNSL254_A0373 Salmonella enterica subsp. enterica serovar Newport str. SL254 haloacetate dehalogenase H-1 YP_002039572.1 380175 D 423368 CDS YP_002039573.1 194444233 381123..382088 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 382088 423368000562 SNSL254_A0374 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002039573.1 381123 D 423368 CDS YP_002039574.2 448967503 382996..383394 1 NC_011080.1 fimbrial chaperone protein StbB 383394 423368000563 SNSL254_A0375 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial chaperone protein StbB YP_002039574.2 382996 D 423368 CDS YP_002039575.1 194446037 complement(383441..384199) 1 NC_011080.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone protein 384199 423368000564 SNSL254_A0376 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial chaperone protein YP_002039575.1 383441 R 423368 CDS YP_002039576.1 194446564 complement(384165..385490) 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial usher 385490 423368000565 SNSL254_A0377 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial usher YP_002039576.1 384165 R 423368 CDS YP_002039577.1 194446287 complement(385495..388056) 1 NC_011080.1 identified by match to protein family HMM PF00577; outer membrane fimbrial usher protein 388056 423368000566 SNSL254_A0378 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane fimbrial usher protein YP_002039577.1 385495 R 423368 CDS YP_002039578.1 194445521 complement(388040..388969) 1 NC_011080.1 identified by match to protein family HMM PF00345; fimbrial chaperone protein 388969 423368000567 SNSL254_A0380 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial chaperone protein YP_002039578.1 388040 R 423368 CDS YP_003495230.1 291080898 complement(388863..389399) 1 NC_011080.1 fimbrial protein major type 1 subunit 389399 stbA 423368000568 stbA Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial protein major type 1 subunit YP_003495230.1 388863 R 423368 CDS YP_002039580.1 194442584 390063..390797 1 NC_011080.1 transmembrane regulator 390797 423368000569 SNSL254_A0381 Salmonella enterica subsp. enterica serovar Newport str. SL254 transmembrane regulator YP_002039580.1 390063 D 423368 CDS YP_008083616.1 513538138 390770..391270 1 NC_011080.1 hypothetical protein 391270 423368000570 SNSL254_A0382 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083616.1 390770 D 423368 CDS YP_002039581.1 194445311 391594..393144 1 NC_011080.1 identified by match to protein family HMM PF00563; hypothetical protein 393144 423368000571 SNSL254_A0383 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039581.1 391594 D 423368 CDS YP_002039582.1 194444237 393244..393987 1 NC_011080.1 identified by match to protein family HMM PF00486; response regulator 393987 423368000572 SNSL254_A0384 Salmonella enterica subsp. enterica serovar Newport str. SL254 response regulator YP_002039582.1 393244 D 423368 CDS YP_002039583.1 194444876 393960..394448 1 NC_011080.1 hypothetical protein 394448 423368000573 SNSL254_A0385 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039583.1 393960 D 423368 CDS YP_002039584.1 194443217 394848..395372 1 NC_011080.1 identified by match to protein family HMM PF06316; match to protein family HMM TIGR03304; attachment invasion locus protein 395372 423368000574 SNSL254_A0386 Salmonella enterica subsp. enterica serovar Newport str. SL254 attachment invasion locus protein YP_002039584.1 394848 D 423368 CDS YP_002039585.1 194443668 395516..396157 1 NC_011080.1 response regulator 396157 423368000575 SNSL254_A0387 Salmonella enterica subsp. enterica serovar Newport str. SL254 response regulator YP_002039585.1 395516 D 423368 CDS YP_002039586.1 194443620 396426..396809 1 NC_011080.1 cytochrome c type biogenesis protein CycH 396809 423368000576 SNSL254_A0388 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c type biogenesis protein CycH YP_002039586.1 396426 D 423368 CDS YP_002039587.1 194444433 complement(396879..398336) 1 NC_011080.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane protein OprM 398336 423368000577 SNSL254_A0389 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein OprM YP_002039587.1 396879 R 423368 CDS YP_002039588.1 194446408 complement(398353..401520) 1 NC_011080.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; hypothetical protein 401520 423368000578 SNSL254_A0390 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039588.1 398353 R 423368 CDS YP_002039589.1 194443154 complement(401517..402743) 1 NC_011080.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; auxiliary transport protein membrane fusion protein (MFP) family 402743 423368000579 SNSL254_A0391 Salmonella enterica subsp. enterica serovar Newport str. SL254 auxiliary transport protein membrane fusion protein (MFP) family YP_002039589.1 401517 R 423368 CDS YP_002039590.1 194442931 403020..405308 1 NC_011080.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 405308 423368000580 SNSL254_A0392 Salmonella enterica subsp. enterica serovar Newport str. SL254 copper-translocating P-type ATPase YP_002039590.1 403020 D 423368 CDS YP_002039591.1 194442534 405320..405784 1 NC_011080.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02044; Cu(I)-responsive transcriptional regulator 405784 cueR 423368000581 cueR Salmonella enterica subsp. enterica serovar Newport str. SL254 Cu(I)-responsive transcriptional regulator YP_002039591.1 405320 D 423368 CDS YP_002039592.1 194444943 405862..406056 1 NC_011080.1 hypothetical protein 406056 423368000582 SNSL254_A0394 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039592.1 405862 D 423368 CDS YP_002039594.1 194443953 406348..407601 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 407601 423368000583 SNSL254_A0396 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator superfamily protein YP_002039594.1 406348 D 423368 CDS YP_002039595.1 194443439 407790..409748 1 NC_011080.1 identified by match to protein family HMM PF01555; type III restriction-modification system StyLTI enzyme mod 409748 423368000584 SNSL254_A0397 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III restriction-modification system StyLTI enzyme mod YP_002039595.1 407790 D 423368 CDS YP_002039596.1 194442308 409761..412730 1 NC_011080.1 identified by match to protein family HMM PF04851; match to protein family HMM PF08774; type III restriction-modification system StyLTI enzyme res 412730 423368000585 SNSL254_A0398 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III restriction-modification system StyLTI enzyme res YP_002039596.1 409761 D 423368 CDS YP_002039597.1 194444074 complement(412884..413003) 1 NC_011080.1 identified by glimmer; hypothetical protein 413003 423368000586 SNSL254_A0399 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039597.1 412884 R 423368 CDS YP_002039598.1 194445894 413225..414628 1 NC_011080.1 identified by match to protein family HMM PF01654; cytochrome bd-II oxidase subunit 1 414628 423368000587 SNSL254_A0400 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome bd-II oxidase subunit 1 YP_002039598.1 413225 D 423368 CDS YP_002039599.1 194443076 414625..415635 1 NC_011080.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 415635 cydB 423368000588 cydB Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome D ubiquinol oxidase subunit II YP_002039599.1 414625 D 423368 CDS YP_002039600.1 194445953 415635..415766 1 NC_011080.1 hypothetical protein 415766 423368000589 SNSL254_A0402 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039600.1 415635 D 423368 CDS YP_002039601.1 194445438 415972..416976 1 NC_011080.1 identified by match to protein family HMM PF00165; araC family transcriptional regulator 416976 423368000590 SNSL254_A0403 Salmonella enterica subsp. enterica serovar Newport str. SL254 araC family transcriptional regulator YP_002039601.1 415972 D 423368 CDS YP_002039602.1 194444217 417140..419230 1 NC_011080.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferrichrome-iron receptor 419230 423368000591 SNSL254_A0404 Salmonella enterica subsp. enterica serovar Newport str. SL254 ferrichrome-iron receptor YP_002039602.1 417140 D 423368 CDS YP_002039603.1 194443842 complement(419269..419901) 1 NC_011080.1 identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; transporter 419901 423368000592 SNSL254_A0405 Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_002039603.1 419269 R 423368 CDS YP_002039604.1 194443323 420133..420408 1 NC_011080.1 identified by match to protein family HMM PF07338; hypothetical protein 420408 423368000593 SNSL254_A0406 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039604.1 420133 D 423368 CDS YP_002039605.1 194442843 complement(420544..422169) 1 NC_011080.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR02329; propionate catabolism operon regulatory protein PrpR 422169 prpR 423368000594 prpR Salmonella enterica subsp. enterica serovar Newport str. SL254 propionate catabolism operon regulatory protein PrpR YP_002039605.1 420544 R 423368 CDS YP_002039606.1 194446369 422435..423322 1 NC_011080.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 423322 prpB 423368000595 prpB Salmonella enterica subsp. enterica serovar Newport str. SL254 2-methylisocitrate lyase YP_002039606.1 422435 D 423368 CDS YP_002039607.1 194445712 423445..424614 1 NC_011080.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 424614 prpC 423368000596 prpC Salmonella enterica subsp. enterica serovar Newport str. SL254 methylcitrate synthase YP_002039607.1 423445 D 423368 CDS YP_002039608.1 194445361 424654..426105 1 NC_011080.1 'functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C'; 2-methylcitrate dehydratase 426105 prpD 423368000597 prpD Salmonella enterica subsp. enterica serovar Newport str. SL254 2-methylcitrate dehydratase YP_002039608.1 424654 D 423368 CDS YP_002039609.1 194444712 426146..428032 1 NC_011080.1 'catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent'; propionyl-CoA synthetase 428032 prpE 423368000598 prpE Salmonella enterica subsp. enterica serovar Newport str. SL254 propionyl-CoA synthetase YP_002039609.1 426146 D 423368 CDS YP_002039610.1 194442596 complement(428136..429110) 1 NC_011080.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 429110 hemB 423368000599 hemB Salmonella enterica subsp. enterica serovar Newport str. SL254 delta-aminolevulinic acid dehydratase YP_002039610.1 428136 R 423368 CDS YP_002039611.1 194445610 429330..429449 1 NC_011080.1 identified by glimmer; hypothetical protein 429449 423368000600 SNSL254_A0413 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039611.1 429330 D 423368 CDS YP_002039612.1 194446643 complement(429440..429592) 1 NC_011080.1 identified by glimmer; hypothetical protein 429592 423368000601 SNSL254_A0414 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039612.1 429440 R 423368 CDS YP_002039613.2 448967504 429623..432508 1 NC_011080.1 identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414; flagellar protein 432508 423368000602 SNSL254_A0415 Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar protein YP_002039613.2 429623 D 423368 CDS YP_008083617.1 513538147 432594..433217 1 NC_011080.1 hypothetical protein 433217 423368000603 SNSL254_A0416 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083617.1 432594 D 423368 CDS YP_002039614.1 194443461 complement(433262..434419) 1 NC_011080.1 this protein has no known enzymatic function; beta-lactam binding protein AmpH 434419 423368000604 SNSL254_A0417 Salmonella enterica subsp. enterica serovar Newport str. SL254 beta-lactam binding protein AmpH YP_002039614.1 433262 R 423368 CDS YP_002039615.1 194445544 434766..435986 1 NC_011080.1 'in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope'; transporter 435986 smbA 423368000605 smbA Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_002039615.1 434766 D 423368 CDS YP_002039616.1 194444994 436001..437095 1 NC_011080.1 identified by match to protein family HMM PF07759; hypothetical protein 437095 423368000606 SNSL254_A0419 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039616.1 436001 D 423368 CDS YP_002039617.1 194444032 complement(437133..437441) 1 NC_011080.1 hypothetical protein 437441 423368000607 SNSL254_A0420 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039617.1 437133 R 423368 CDS YP_002039618.1 194443340 437709..437924 1 NC_011080.1 hypothetical protein 437924 423368000608 SNSL254_A0421 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039618.1 437709 D 423368 CDS YP_002039619.1 194446690 complement(437950..439044) 1 NC_011080.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 439044 ddl 423368000609 ddl Salmonella enterica subsp. enterica serovar Newport str. SL254 D-alanyl-alanine synthetase A YP_002039619.1 437950 R 423368 CDS YP_002039620.1 194442870 439152..439835 1 NC_011080.1 identified by match to protein family HMM PF06904; extensin family protein 439835 423368000610 SNSL254_A0423 Salmonella enterica subsp. enterica serovar Newport str. SL254 extensin family protein YP_002039620.1 439152 D 423368 CDS YP_002039621.1 194442257 440004..441215 1 NC_011080.1 identified by match to protein family HMM PF07690; major facilitator superfamily protein 441215 423368000611 SNSL254_A0424 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator superfamily protein YP_002039621.1 440004 D 423368 CDS YP_002039622.1 194445086 441512..441772 1 NC_011080.1 hypothetical protein 441772 423368000612 SNSL254_A0425 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039622.1 441512 D 423368 CDS YP_002039623.1 194444632 442121..442441 1 NC_011080.1 identified by match to protein family HMM PF07769; hypothetical protein 442441 423368000613 SNSL254_A0426 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039623.1 442121 D 423368 CDS YP_002039624.1 194446449 442533..443645 1 NC_011080.1 'catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis'; diguanylate cyclase AdrA 443645 adrA 423368000614 adrA Salmonella enterica subsp. enterica serovar Newport str. SL254 diguanylate cyclase AdrA YP_002039624.1 442533 D 423368 CDS YP_002039625.1 194445892 complement(443660..444469) 1 NC_011080.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 444469 proC 423368000615 proC Salmonella enterica subsp. enterica serovar Newport str. SL254 pyrroline-5-carboxylate reductase YP_002039625.1 443660 R 423368 CDS YP_002039626.1 194443102 444503..444652 1 NC_011080.1 identified by glimmer; hypothetical protein 444652 423368000616 SNSL254_A0429 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039626.1 444503 D 423368 CDS YP_002039627.1 194442630 444609..445064 1 NC_011080.1 identified by match to protein family HMM PF02639; hypothetical protein 445064 423368000617 SNSL254_A0430 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039627.1 444609 D 423368 CDS YP_002039628.1 194444401 445249..445794 1 NC_011080.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 445794 aroL 423368000618 aroL Salmonella enterica subsp. enterica serovar Newport str. SL254 shikimate kinase YP_002039628.1 445249 D 423368 CDS YP_002039629.1 194443545 445821..446012 1 NC_011080.1 hypothetical protein 446012 423368000619 SNSL254_A0432 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039629.1 445821 D 423368 CDS YP_002039630.1 194445036 446263..446940 1 NC_011080.1 identified by match to protein family HMM PF07302; hypothetical protein 446940 423368000620 SNSL254_A0433 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039630.1 446263 D 423368 CDS YP_002039631.1 194444639 447011..447295 1 NC_011080.1 identified by match to protein family HMM PF06865; hypothetical protein 447295 423368000621 SNSL254_A0434 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039631.1 447011 D 423368 CDS YP_002039632.1 194445672 complement(447333..448244) 1 NC_011080.1 Required for efficient pilin antigenic variation; recombination associated protein 448244 rdgC 423368000622 rdgC Salmonella enterica subsp. enterica serovar Newport str. SL254 recombination associated protein YP_002039632.1 447333 R 423368 CDS YP_002039633.1 194445321 448370..449278 1 NC_011080.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 449278 423368000623 SNSL254_A0436 Salmonella enterica subsp. enterica serovar Newport str. SL254 fructokinase YP_002039633.1 448370 D 423368 CDS YP_002039634.1 194442734 complement(449298..450470) 1 NC_011080.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ 450470 423368000624 SNSL254_A0437 Salmonella enterica subsp. enterica serovar Newport str. SL254 MFS transport protein AraJ YP_002039634.1 449298 R 423368 CDS YP_002039635.1 194446724 complement(450643..453783) 1 NC_011080.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease SbcC 453783 423368000625 SNSL254_A0438 Salmonella enterica subsp. enterica serovar Newport str. SL254 exonuclease SbcC YP_002039635.1 450643 R 423368 CDS YP_002039636.1 194444758 complement(453780..454982) 1 NC_011080.1 'with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity'; exonuclease SbcD 454982 423368000626 SNSL254_A0439 Salmonella enterica subsp. enterica serovar Newport str. SL254 exonuclease SbcD YP_002039636.1 453780 R 423368 CDS YP_002039637.1 194445785 455197..455886 1 NC_011080.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 455886 phoB 423368000627 phoB Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator PhoB YP_002039637.1 455197 D 423368 CDS YP_002039638.1 194442327 455956..457251 1 NC_011080.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 457251 phoR 423368000628 phoR Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphate regulon sensor protein YP_002039638.1 455956 D 423368 CDS YP_002039639.1 194444781 complement(457464..457613) 1 NC_011080.1 hypothetical protein 457613 423368000629 SNSL254_A0443 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039639.1 457464 R 423368 CDS YP_002039640.1 194445513 457660..458979 1 NC_011080.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 458979 brnQ 423368000630 brnQ Salmonella enterica subsp. enterica serovar Newport str. SL254 branched-chain amino acid transport system II carrier protein YP_002039640.1 457660 D 423368 CDS YP_002039641.1 194444302 458994..460424 1 NC_011080.1 'cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation'; proline-specific permease 460424 proY 423368000631 proY Salmonella enterica subsp. enterica serovar Newport str. SL254 proline-specific permease YP_002039641.1 458994 D 423368 CDS YP_002039642.1 194444664 460586..462403 1 NC_011080.1 identified by match to protein family HMM PF00128; maltodextrin glucosidase 462403 423368000632 SNSL254_A0446 Salmonella enterica subsp. enterica serovar Newport str. SL254 maltodextrin glucosidase YP_002039642.1 460586 D 423368 CDS YP_002039643.1 194442811 complement(462475..463077) 1 NC_011080.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; peroxiredoxin-2 463077 423368000633 SNSL254_A0447 Salmonella enterica subsp. enterica serovar Newport str. SL254 peroxiredoxin-2 YP_002039643.1 462475 R 423368 CDS YP_002039644.1 194443468 complement(463288..463869) 1 NC_011080.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; ACP phosphodieterase 463869 acpH 423368000634 acpH Salmonella enterica subsp. enterica serovar Newport str. SL254 ACP phosphodieterase YP_002039644.1 463288 R 423368 CDS YP_002039645.1 194445819 463963..465027 1 NC_011080.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 465027 queA 423368000635 queA Salmonella enterica subsp. enterica serovar Newport str. SL254 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_002039645.1 463963 D 423368 CDS YP_002039646.1 194445159 465014..465160 1 NC_011080.1 DNA metabolism protein 465160 423368000636 SNSL254_A0450 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA metabolism protein YP_002039646.1 465014 D 423368 CDS YP_002039647.1 194444575 465224..466351 1 NC_011080.1 'Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)'; queuine tRNA-ribosyltransferase 466351 tgt 423368000637 tgt Salmonella enterica subsp. enterica serovar Newport str. SL254 queuine tRNA-ribosyltransferase YP_002039647.1 465224 D 423368 CDS YP_002039648.1 194444866 466374..466706 1 NC_011080.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 466706 yajC 423368000638 yajC Salmonella enterica subsp. enterica serovar Newport str. SL254 preprotein translocase subunit YajC YP_002039648.1 466374 D 423368 CDS YP_002039649.1 194445387 466734..468581 1 NC_011080.1 'part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane'; preprotein translocase subunit SecD 468581 secD 423368000639 secD Salmonella enterica subsp. enterica serovar Newport str. SL254 preprotein translocase subunit SecD YP_002039649.1 466734 D 423368 CDS YP_002039650.1 194443856 468592..469563 1 NC_011080.1 'forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF'; preprotein translocase subunit SecF 469563 secF 423368000640 secF Salmonella enterica subsp. enterica serovar Newport str. SL254 preprotein translocase subunit SecF YP_002039650.1 468592 D 423368 CDS YP_002039651.1 194442558 469712..470077 1 NC_011080.1 identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase 470077 423368000641 SNSL254_A0455 Salmonella enterica subsp. enterica serovar Newport str. SL254 glyoxalase/bleomycin resistance protein/dioxygenase YP_002039651.1 469712 D 423368 CDS YP_002039652.1 194443177 470103..470795 1 NC_011080.1 identified by match to protein family HMM PF08279; type 11 helix-turn-helix protein 470795 423368000642 SNSL254_A0456 Salmonella enterica subsp. enterica serovar Newport str. SL254 type 11 helix-turn-helix protein YP_002039652.1 470103 D 423368 CDS YP_002039653.1 194442979 470965..471312 1 NC_011080.1 identified by match to protein family HMM PF01844; hypothetical protein 471312 423368000643 SNSL254_A0457 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039653.1 470965 D 423368 CDS YP_002039654.1 194444768 complement(471941..472804) 1 NC_011080.1 identified by match to protein family HMM PF03502; nucleoside-specific channel-forming protein tsx 472804 423368000644 SNSL254_A0459 Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoside-specific channel-forming protein tsx YP_002039654.1 471941 R 423368 CDS YP_002039655.1 194445494 complement(473104..473601) 1 NC_011080.1 hypothetical protein 473601 423368000645 SNSL254_A0460 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039655.1 473104 R 423368 CDS YP_002039656.1 194443690 473676..473822 1 NC_011080.1 identified by glimmer; hypothetical protein 473822 423368000646 SNSL254_A0461 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039656.1 473676 D 423368 CDS YP_002039657.1 194446615 473795..474244 1 NC_011080.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 474244 nrdR 423368000647 nrdR Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator NrdR YP_002039657.1 473795 D 423368 CDS YP_002039658.1 194442362 474248..475351 1 NC_011080.1 'riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil'; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 475351 ribD 423368000648 ribD Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_002039658.1 474248 D 423368 CDS YP_002039659.1 194442856 475440..475910 1 NC_011080.1 'RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not'; 6,7-dimethyl-8-ribityllumazine synthase 475910 ribH 423368000649 ribH Salmonella enterica subsp. enterica serovar Newport str. SL254 6,7-dimethyl-8-ribityllumazine synthase YP_002039659.1 475440 D 423368 CDS YP_002039660.1 194445003 475931..476350 1 NC_011080.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 476350 nusB 423368000650 nusB Salmonella enterica subsp. enterica serovar Newport str. SL254 transcription antitermination protein NusB YP_002039660.1 475931 D 423368 CDS YP_002039661.1 194445595 476429..477409 1 NC_011080.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 477409 thiL 423368000651 thiL Salmonella enterica subsp. enterica serovar Newport str. SL254 thiamine monophosphate kinase YP_002039661.1 476429 D 423368 CDS YP_002039662.1 194445972 477396..477902 1 NC_011080.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 477902 pgpA 423368000652 pgpA Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphatidylglycerophosphatase A YP_002039662.1 477396 D 423368 CDS YP_002039663.1 194446634 complement(478006..478980) 1 NC_011080.1 identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 478980 423368000653 SNSL254_A0468 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase, aldo/keto reductase family YP_002039663.1 478006 R 423368 CDS YP_002039664.1 194443160 complement(479037..480899) 1 NC_011080.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 480899 dxs 423368000654 dxs Salmonella enterica subsp. enterica serovar Newport str. SL254 1-deoxy-D-xylulose-5-phosphate synthase YP_002039664.1 479037 R 423368 CDS YP_002039665.1 194445849 complement(480923..481822) 1 NC_011080.1 identified by match to protein family HMM PF00348; geranyltranstransferase 481822 ispA 423368000655 ispA Salmonella enterica subsp. enterica serovar Newport str. SL254 geranyltranstransferase YP_002039665.1 480923 R 423368 CDS YP_002039666.1 194444156 complement(481823..482065) 1 NC_011080.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 482065 xseB 423368000656 xseB Salmonella enterica subsp. enterica serovar Newport str. SL254 exodeoxyribonuclease VII small subunit YP_002039666.1 481823 R 423368 CDS YP_002039667.1 194446549 482275..483723 1 NC_011080.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 483723 thiI 423368000657 thiI Salmonella enterica subsp. enterica serovar Newport str. SL254 thiamine biosynthesis protein ThiI YP_002039667.1 482275 D 423368 CDS YP_002039668.1 194445703 complement(483767..484564) 1 NC_011080.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR03255; 2-aminoethylphosphonate ABC transport system membrane component PhnV 484564 phnV 423368000658 phnV Salmonella enterica subsp. enterica serovar Newport str. SL254 2-aminoethylphosphonate ABC transport system membrane component PhnV YP_002039668.1 483767 R 423368 CDS YP_002039669.1 194442916 complement(484558..485427) 1 NC_011080.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR03226; 2-aminoethylphosphonate ABC transporter permease 485427 phnU 423368000659 phnU Salmonella enterica subsp. enterica serovar Newport str. SL254 2-aminoethylphosphonate ABC transporter permease YP_002039669.1 484558 R 423368 CDS YP_002039670.1 194442326 complement(485430..486539) 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR03258; 2-aminoethylphosphonate ABC transporter ATP-binding protein 486539 phnT 423368000660 phnT Salmonella enterica subsp. enterica serovar Newport str. SL254 2-aminoethylphosphonate ABC transporter ATP-binding protein YP_002039670.1 485430 R 423368 CDS YP_002039671.1 194443954 complement(486545..487558) 1 NC_011080.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR03227; 2-aminoethylphosphonate ABC transporter substrate-binding protein 487558 phnS 423368000661 phnS Salmonella enterica subsp. enterica serovar Newport str. SL254 2-aminoethylphosphonate ABC transporter substrate-binding protein YP_002039671.1 486545 R 423368 CDS YP_002039672.1 194445645 complement(487756..488475) 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR03337; transcriptional regulator 488475 423368000662 SNSL254_A0477 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002039672.1 487756 R 423368 CDS YP_002039673.1 194445212 488615..489718 1 NC_011080.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 489718 phnW 423368000663 phnW Salmonella enterica subsp. enterica serovar Newport str. SL254 2-aminoethylphosphonate--pyruvate transaminase YP_002039673.1 488615 D 423368 CDS YP_002039674.1 194446671 489728..490537 1 NC_011080.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 490537 phnX 423368000664 phnX Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphonoacetaldehyde hydrolase YP_002039674.1 489728 D 423368 CDS YP_002039675.1 194446018 complement(490634..491224) 1 NC_011080.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 family protein 491224 423368000665 SNSL254_A0480 Salmonella enterica subsp. enterica serovar Newport str. SL254 DJ-1 family protein YP_002039675.1 490634 R 423368 CDS YP_002039676.1 194443012 complement(491187..492098) 1 NC_011080.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 492098 panE 423368000666 panE Salmonella enterica subsp. enterica serovar Newport str. SL254 2-dehydropantoate 2-reductase YP_002039676.1 491187 R 423368 CDS YP_002039677.1 194442485 492224..492715 1 NC_011080.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 492715 423368000667 SNSL254_A0482 Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleotide-binding protein YP_002039677.1 492224 D 423368 CDS YP_002039678.1 194442718 complement(492762..494126) 1 NC_011080.1 identified by match to protein family HMM PF07690; inner membrane transport protein YajR 494126 423368000668 SNSL254_A0483 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport protein YajR YP_002039678.1 492762 R 423368 CDS YP_002039679.1 194443482 494651..496162 1 NC_011080.1 identified by match to protein family HMM PF08238; hypothetical protein 496162 423368000669 SNSL254_A0484 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039679.1 494651 D 423368 CDS YP_002039680.1 194445524 496174..497667 1 NC_011080.1 identified by match to protein family HMM PF08238; hypothetical protein 497667 423368000670 SNSL254_A0485 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039680.1 496174 D 423368 CDS YP_002039681.1 194445009 complement(497749..498636) 1 NC_011080.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 498636 cyoE 423368000671 cyoE Salmonella enterica subsp. enterica serovar Newport str. SL254 protoheme IX farnesyltransferase YP_002039681.1 497749 R 423368 CDS YP_002039682.1 194446490 complement(498651..498980) 1 NC_011080.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847; cytochrome o ubiquinol oxidase subunit IV 498980 cyoD 423368000672 cyoD Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome o ubiquinol oxidase subunit IV YP_002039682.1 498651 R 423368 CDS YP_002039683.1 194446076 complement(498980..499594) 1 NC_011080.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842; cytochrome o ubiquinol oxidase subunit III 499594 cyoC 423368000673 cyoC Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome o ubiquinol oxidase subunit III YP_002039683.1 498980 R 423368 CDS YP_002039684.1 194442831 complement(499584..501575) 1 NC_011080.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843; cytochrome o ubiquinol oxidase subunit I 501575 cyoB 423368000674 cyoB Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome o ubiquinol oxidase subunit I YP_002039684.1 499584 R 423368 CDS YP_002039685.1 194442307 complement(501586..502542) 1 NC_011080.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433; cytochrome o ubiquinol oxidase subunit II 502542 cyoA 423368000675 cyoA Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome o ubiquinol oxidase subunit II YP_002039685.1 501586 R 423368 CDS YP_002039686.1 194444098 complement(502789..502911) 1 NC_011080.1 identified by glimmer; hypothetical protein 502911 423368000676 SNSL254_A0491 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039686.1 502789 R 423368 CDS YP_002039687.1 194446087 complement(502995..504476) 1 NC_011080.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter 504476 ampG 423368000677 ampG Salmonella enterica subsp. enterica serovar Newport str. SL254 muropeptide transporter YP_002039687.1 502995 R 423368 CDS YP_008083618.1 513538148 complement(504514..505146) 1 NC_011080.1 hypothetical protein 505146 423368000678 SNSL254_A0493 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083618.1 504514 R 423368 CDS YP_002039688.1 194442448 complement(505154..505273) 1 NC_011080.1 identified by glimmer; hypothetical protein 505273 423368000679 SNSL254_A0494 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039688.1 505154 R 423368 CDS YP_002039689.1 194442852 505396..505713 1 NC_011080.1 'positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress'; transcriptional regulator BolA 505713 423368000680 SNSL254_A0495 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator BolA YP_002039689.1 505396 D 423368 CDS YP_002039690.1 194443426 506060..507358 1 NC_011080.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 507358 tig 423368000681 tig Salmonella enterica subsp. enterica serovar Newport str. SL254 trigger factor YP_002039690.1 506060 D 423368 CDS YP_002039691.1 194443946 507605..508228 1 NC_011080.1 'hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates'; ATP-dependent Clp protease proteolytic subunit 508228 clpP 423368000682 clpP Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent Clp protease proteolytic subunit YP_002039691.1 507605 D 423368 CDS YP_002039692.1 194445635 508480..509751 1 NC_011080.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 509751 clpX 423368000683 clpX Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent protease ATP-binding subunit ClpX YP_002039692.1 508480 D 423368 CDS YP_002039693.1 194446124 509937..512291 1 NC_011080.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; DNA-binding ATP-dependent protease La 512291 lon 423368000684 lon Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding ATP-dependent protease La YP_002039693.1 509937 D 423368 CDS YP_002039694.1 194446645 512500..512772 1 NC_011080.1 histone-like DNA-binding protein; transcriptional regulator HU subunit beta 512772 hupB 423368000685 hupB Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator HU subunit beta YP_002039694.1 512500 D 423368 CDS YP_002039695.1 194442454 513063..514934 1 NC_011080.1 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase 514934 ppiD 423368000686 ppiD Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidyl-prolyl cis-trans isomerase YP_002039695.1 513063 D 423368 CDS YP_002039696.1 194446699 515084..515458 1 NC_011080.1 identified by match to protein family HMM TIGR00426; competence protein ComEA 515458 423368000687 SNSL254_A0502 Salmonella enterica subsp. enterica serovar Newport str. SL254 competence protein ComEA YP_002039696.1 515084 D 423368 CDS YP_002039697.1 194446150 515562..515960 1 NC_011080.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase superfamily protein 515960 423368000688 SNSL254_A0503 Salmonella enterica subsp. enterica serovar Newport str. SL254 thioesterase superfamily protein YP_002039697.1 515562 D 423368 CDS YP_002039698.1 194445512 complement(516066..516761) 1 NC_011080.1 'YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His'; queuosine biosynthesis protein QueC 516761 423368000689 SNSL254_A0504 Salmonella enterica subsp. enterica serovar Newport str. SL254 queuosine biosynthesis protein QueC YP_002039698.1 516066 R 423368 CDS YP_002039699.1 194444886 complement(516826..518526) 1 NC_011080.1 identified by match to protein family HMM PF00496; family 5 extracellular solute-binding protein 518526 423368000690 SNSL254_A0505 Salmonella enterica subsp. enterica serovar Newport str. SL254 family 5 extracellular solute-binding protein YP_002039699.1 516826 R 423368 CDS YP_002039700.1 194444119 518627..519445 1 NC_011080.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein 519445 423368000691 SNSL254_A0506 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039700.1 518627 D 423368 CDS YP_002039701.1 194443609 complement(519495..520547) 1 NC_011080.1 identified by match to protein family HMM PF00291; pyridoxal-5'-phosphate-dependent protein subunit beta 520547 423368000692 SNSL254_A0507 Salmonella enterica subsp. enterica serovar Newport str. SL254 pyridoxal-5'-phosphate-dependent protein subunit beta YP_002039701.1 519495 R 423368 CDS YP_002039702.1 194442788 520663..521121 1 NC_011080.1 identified by match to protein family HMM PF01037; glutamate uptake regulatory protein 521121 423368000693 SNSL254_A0508 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate uptake regulatory protein YP_002039702.1 520663 D 423368 CDS YP_002039703.1 194442312 521162..522934 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding components 522934 423368000694 SNSL254_A0509 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug transporter membrane\ATP-binding components YP_002039703.1 521162 D 423368 CDS YP_002039704.1 194446213 522927..524708 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding components 524708 423368000695 SNSL254_A0510 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug transporter membrane\ATP-binding components YP_002039704.1 522927 D 423368 CDS YP_002039705.1 194445406 524742..524870 1 NC_011080.1 hypothetical protein 524870 423368000696 SNSL254_A0511 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039705.1 524742 D 423368 CDS YP_002039706.1 194446413 524921..525259 1 NC_011080.1 'indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.'; nitrogen regulatory protein P-II 2 525259 423368000697 SNSL254_A0512 Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrogen regulatory protein P-II 2 YP_002039706.1 524921 D 423368 CDS YP_002039707.1 194446031 525291..526577 1 NC_011080.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 526577 amt 423368000698 amt Salmonella enterica subsp. enterica serovar Newport str. SL254 ammonium transporter YP_002039707.1 525291 D 423368 CDS YP_002039708.1 194443130 complement(526677..527537) 1 NC_011080.1 identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189; acyl-CoA thioesterase 527537 tesB 423368000699 tesB Salmonella enterica subsp. enterica serovar Newport str. SL254 acyl-CoA thioesterase YP_002039708.1 526677 R 423368 CDS YP_002039709.1 194442280 527752..528321 1 NC_011080.1 lipoprotein 528321 423368000700 SNSL254_A0515 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002039709.1 527752 D 423368 CDS YP_002039710.1 194443797 complement(528354..528743) 1 NC_011080.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase 528743 423368000701 SNSL254_A0516 Salmonella enterica subsp. enterica serovar Newport str. SL254 methylated-DNA-[protein]-cysteine S-methyltransferase YP_002039710.1 528354 R 423368 CDS YP_002039711.1 194443540 complement(528974..530524) 1 NC_011080.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 530524 423368000703 SNSL254_A0518 Salmonella enterica subsp. enterica serovar Newport str. SL254 cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002039711.1 528974 R 423368 CDS YP_002039712.1 194445193 530749..531009 1 NC_011080.1 'RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome'; 50S ribosomal protein L31 531009 rpmE2 423368000704 rpmE2 Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L31 YP_002039712.1 530749 D 423368 CDS YP_002039713.1 194446417 531015..531155 1 NC_011080.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 531155 rpmJ 423368000705 rpmJ Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L36 YP_002039713.1 531015 D 423368 CDS YP_002039714.1 194445891 complement(531211..531681) 1 NC_011080.1 hypothetical protein 531681 423368000706 SNSL254_A0521 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039714.1 531211 R 423368 CDS YP_002039715.1 194443098 complement(531798..532349) 1 NC_011080.1 identified by match to protein family HMM PF00132; maltose O-acetyltransferase 532349 423368000707 SNSL254_A0522 Salmonella enterica subsp. enterica serovar Newport str. SL254 maltose O-acetyltransferase YP_002039715.1 531798 R 423368 CDS YP_002039716.1 194443355 complement(532528..532746) 1 NC_011080.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 532746 423368000708 SNSL254_A0523 Salmonella enterica subsp. enterica serovar Newport str. SL254 hemolysin expression-modulating protein YP_002039716.1 532528 R 423368 CDS YP_002039717.1 194443865 complement(532774..533148) 1 NC_011080.1 hypothetical protein 533148 423368000709 SNSL254_A0524 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039717.1 532774 R 423368 CDS YP_002039718.1 194446686 complement(533644..536793) 1 NC_011080.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; acriflavine resistance protein B 536793 423368000710 SNSL254_A0525 Salmonella enterica subsp. enterica serovar Newport str. SL254 acriflavine resistance protein B YP_002039718.1 533644 R 423368 CDS YP_002039719.1 194444901 complement(536816..538009) 1 NC_011080.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein A 538009 acrA 423368000711 acrA Salmonella enterica subsp. enterica serovar Newport str. SL254 acriflavine resistance protein A YP_002039719.1 536816 R 423368 CDS YP_002039720.1 194443145 538151..538804 1 NC_011080.1 regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 538804 acrR 423368000712 acrR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional repressor AcrR YP_002039720.1 538151 D 423368 CDS YP_002039721.1 194446103 538923..542285 1 NC_011080.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 542285 423368000713 SNSL254_A0528 Salmonella enterica subsp. enterica serovar Newport str. SL254 potassium efflux protein KefA YP_002039721.1 538923 D 423368 CDS YP_002039722.1 194442277 complement(542327..543262) 1 NC_011080.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 543262 423368000714 SNSL254_A0529 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039722.1 542327 R 423368 CDS YP_002039723.1 194442921 complement(543332..543499) 1 NC_011080.1 hypothetical protein 543499 423368000715 SNSL254_A0530 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039723.1 543332 R 423368 CDS YP_002039724.1 194444206 complement(543513..544028) 1 NC_011080.1 'PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks'; primosomal replication protein N'' 544028 423368000716 SNSL254_A0531 Salmonella enterica subsp. enterica serovar Newport str. SL254 primosomal replication protein N'' YP_002039724.1 543513 R 423368 CDS YP_002039725.1 194442567 544109..544486 1 NC_011080.1 identified by match to protein family HMM PF04304; hypothetical protein 544486 423368000717 SNSL254_A0532 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039725.1 544109 D 423368 CDS YP_002039726.1 194443575 544639..545190 1 NC_011080.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 545190 apt 423368000718 apt Salmonella enterica subsp. enterica serovar Newport str. SL254 adenine phosphoribosyltransferase YP_002039726.1 544639 D 423368 CDS YP_002039727.1 194442832 545304..547232 1 NC_011080.1 'catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA'; DNA polymerase III subunits gamma and tau 547232 dnaX 423368000719 dnaX Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase III subunits gamma and tau YP_002039727.1 545304 D 423368 CDS YP_002039728.1 194444967 547278..547607 1 NC_011080.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 547607 423368000720 SNSL254_A0536 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039728.1 547278 D 423368 CDS YP_002039729.1 194444330 547607..548212 1 NC_011080.1 'involved in a recombinational process of DNA repair, independent of the recBC complex'; recombination protein RecR 548212 recR 423368000721 recR Salmonella enterica subsp. enterica serovar Newport str. SL254 recombination protein RecR YP_002039729.1 547607 D 423368 CDS YP_002039730.1 194443988 548323..550197 1 NC_011080.1 molecular chaperone; heat shock protein 90 550197 htpG 423368000722 htpG Salmonella enterica subsp. enterica serovar Newport str. SL254 heat shock protein 90 YP_002039730.1 548323 D 423368 CDS YP_002039731.1 194445083 550438..551082 1 NC_011080.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 551082 adk 423368000723 adk Salmonella enterica subsp. enterica serovar Newport str. SL254 adenylate kinase YP_002039731.1 550438 D 423368 CDS YP_002039732.1 194445526 551161..551301 1 NC_011080.1 hypothetical protein 551301 423368000724 SNSL254_A0540 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039732.1 551161 D 423368 CDS YP_002039733.1 194446576 551311..552273 1 NC_011080.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 552273 hemH 423368000725 hemH Salmonella enterica subsp. enterica serovar Newport str. SL254 ferrochelatase YP_002039733.1 551311 D 423368 CDS YP_002039734.1 194446022 complement(552270..553241) 1 NC_011080.1 identified by match to protein family HMM PF07859; acetyl esterase 553241 423368000726 SNSL254_A0542 Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyl esterase YP_002039734.1 552270 R 423368 CDS YP_002039735.1 194443043 553394..554698 1 NC_011080.1 identified by match to protein family HMM PF00294; inosine kinase 554698 gsk 423368000727 gsk Salmonella enterica subsp. enterica serovar Newport str. SL254 inosine kinase YP_002039735.1 553394 D 423368 CDS YP_002039736.1 194445784 complement(554747..556423) 1 NC_011080.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; cation:proton antiport protein 556423 423368000728 SNSL254_A0544 Salmonella enterica subsp. enterica serovar Newport str. SL254 cation:proton antiport protein YP_002039736.1 554747 R 423368 CDS YP_002039737.1 194442944 556501..556626 1 NC_011080.1 identified by glimmer; hypothetical protein 556626 423368000729 SNSL254_A0545 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039737.1 556501 D 423368 CDS YP_002039738.1 194444687 complement(556638..557858) 1 NC_011080.1 identified by match to protein family HMM PF07690; fosmidomycin resistance protein 557858 fsr 423368000730 fsr Salmonella enterica subsp. enterica serovar Newport str. SL254 fosmidomycin resistance protein YP_002039738.1 556638 R 423368 CDS YP_002039739.1 194446357 558031..559683 1 NC_011080.1 'catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides'; bifunctional UDP-sugar hydrolase/5'-nucleotidase 559683 ushA 423368000731 ushA Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional UDP-sugar hydrolase/5'-nucleotidase YP_002039739.1 558031 D 423368 CDS YP_002039740.1 194444718 complement(559800..560279) 1 NC_011080.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; hypothetical protein 560279 ybaK 423368000732 ybaK Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039740.1 559800 R 423368 CDS YP_002039741.1 194446252 complement(560481..561275) 1 NC_011080.1 identified by match to protein family HMM PF07446; GumN family protein 561275 423368000734 SNSL254_A0550 Salmonella enterica subsp. enterica serovar Newport str. SL254 GumN family protein YP_002039741.1 560481 R 423368 CDS YP_002039742.1 194444338 complement(561361..562188) 1 NC_011080.1 hypothetical protein 562188 423368000735 SNSL254_A0551 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039742.1 561361 R 423368 CDS YP_002039743.1 194445285 complement(562342..564843) 1 NC_011080.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper exporting ATPase 564843 copA 423368000736 copA Salmonella enterica subsp. enterica serovar Newport str. SL254 copper exporting ATPase YP_002039743.1 562342 R 423368 CDS YP_002039744.1 194443306 564953..565369 1 NC_011080.1 activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 565369 cueR 423368000737 cueR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator CueR YP_002039744.1 564953 D 423368 CDS YP_002039745.1 194442548 complement(565370..565822) 1 NC_011080.1 identified by match to protein family HMM PF01957; hypothetical protein 565822 423368000738 SNSL254_A0554 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039745.1 565370 R 423368 CDS YP_002039746.1 194446507 complement(565819..566736) 1 NC_011080.1 identified by match to protein family HMM PF01145; hypothetical protein 566736 423368000739 SNSL254_A0555 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039746.1 565819 R 423368 CDS YP_002039747.1 194445905 566883..567560 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 567560 423368000740 SNSL254_A0556 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002039747.1 566883 D 423368 CDS YP_002039748.1 194446215 567547..568326 1 NC_011080.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 568326 423368000741 SNSL254_A0557 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039748.1 567547 D 423368 CDS YP_002039749.1 194443127 complement(568412..569293) 1 NC_011080.1 identified by match to protein family HMM PF00085; thioredoxin domain-containing protein 569293 423368000742 SNSL254_A0558 Salmonella enterica subsp. enterica serovar Newport str. SL254 thioredoxin domain-containing protein YP_002039749.1 568412 R 423368 CDS YP_002039750.1 194442377 complement(569326..570096) 1 NC_011080.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 570096 423368000743 SNSL254_A0559 Salmonella enterica subsp. enterica serovar Newport str. SL254 short chain dehydrogenase YP_002039750.1 569326 R 423368 CDS YP_002039751.1 194444315 complement(570251..570865) 1 NC_011080.1 identified by match to protein family HMM PF00657; multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 570865 423368000744 SNSL254_A0561 Salmonella enterica subsp. enterica serovar Newport str. SL254 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 YP_002039751.1 570251 R 423368 CDS YP_002039752.1 194443400 570836..571522 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 571522 423368000745 SNSL254_A0560 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002039752.1 570836 D 423368 CDS YP_002039753.1 194445108 571519..573933 1 NC_011080.1 identified by match to protein family HMM PF02687; efflux ABC transporter permease protein 573933 423368000746 SNSL254_A0562 Salmonella enterica subsp. enterica serovar Newport str. SL254 efflux ABC transporter permease protein YP_002039753.1 571519 D 423368 CDS YP_002039754.1 194443759 574118..575251 1 NC_011080.1 outer membrane protein 575251 423368000747 SNSL254_A0563 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein YP_002039754.1 574118 D 423368 CDS YP_002039755.1 194445629 575508..576338 1 NC_011080.1 identified by match to protein family HMM PF03180; lipoprotein 576338 423368000748 SNSL254_A0564 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002039755.1 575508 D 423368 CDS YP_002039756.1 194446738 576375..577391 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383; methionine import ATP-binding protein MetN 2 577391 423368000749 SNSL254_A0565 Salmonella enterica subsp. enterica serovar Newport str. SL254 methionine import ATP-binding protein MetN 2 YP_002039756.1 576375 D 423368 CDS YP_002039757.1 194445651 577384..578043 1 NC_011080.1 identified by match to protein family HMM PF00528; ABC transporter 578043 423368000750 SNSL254_A0566 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter YP_002039757.1 577384 D 423368 CDS YP_002039758.1 194445407 complement(578082..579176) 1 NC_011080.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 579176 ybbB 423368000751 ybbB Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA 2-selenouridine synthase YP_002039758.1 578082 R 423368 CDS YP_002039759.1 194444908 complement(579246..580172) 1 NC_011080.1 activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS 580172 423368000752 SNSL254_A0568 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator AllS YP_002039759.1 579246 R 423368 CDS YP_002039760.1 194444211 580399..580881 1 NC_011080.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 580881 allA 423368000753 allA Salmonella enterica subsp. enterica serovar Newport str. SL254 ureidoglycolate hydrolase YP_002039760.1 580399 D 423368 CDS YP_002039761.1 194444258 580960..581778 1 NC_011080.1 regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 581778 423368000754 SNSL254_A0570 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional repressor AllR YP_002039761.1 580960 D 423368 CDS YP_002039762.1 194442880 581863..583644 1 NC_011080.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 583644 gcl 423368000755 gcl Salmonella enterica subsp. enterica serovar Newport str. SL254 glyoxylate carboligase YP_002039762.1 581863 D 423368 CDS YP_002039763.1 194442406 583657..584433 1 NC_011080.1 identified by match to protein family HMM PF01261; match to protein family HMM TIGR03234; hydroxypyruvate isomerase 584433 hyi 423368000756 hyi Salmonella enterica subsp. enterica serovar Newport str. SL254 hydroxypyruvate isomerase YP_002039763.1 583657 D 423368 CDS YP_002039764.1 194443819 584534..585412 1 NC_011080.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505; 2-hydroxy-3-oxopropionate reductase 585412 423368000757 SNSL254_A0573 Salmonella enterica subsp. enterica serovar Newport str. SL254 2-hydroxy-3-oxopropionate reductase YP_002039764.1 584534 D 423368 CDS YP_002039765.1 194443146 585478..586725 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter protein 586725 423368000758 SNSL254_A0574 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator family transporter protein YP_002039765.1 585478 D 423368 CDS YP_002039766.1 194444865 586821..588275 1 NC_011080.1 identified by match to protein family HMM PF02133; match to protein family HMM TIGR00800; allantoin permease 588275 ncs1 423368000759 ncs1 Salmonella enterica subsp. enterica serovar Newport str. SL254 allantoin permease YP_002039766.1 586821 D 423368 CDS YP_002039767.1 194446659 588354..589715 1 NC_011080.1 Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 589715 allB 423368000760 allB Salmonella enterica subsp. enterica serovar Newport str. SL254 allantoinase YP_002039767.1 588354 D 423368 CDS YP_002039768.1 194443872 589774..591072 1 NC_011080.1 identified by match to protein family HMM PF00860; purine permease YbbY 591072 423368000761 SNSL254_A0577 Salmonella enterica subsp. enterica serovar Newport str. SL254 purine permease YbbY YP_002039768.1 589774 D 423368 CDS YP_002039769.1 194445092 591095..592243 1 NC_011080.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 592243 423368000762 SNSL254_A0578 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerate kinase YP_002039769.1 591095 D 423368 CDS YP_002039770.1 194445251 complement(592323..593108) 1 NC_011080.1 identified by match to protein family HMM PF05899; match to protein family HMM PF07883; match to protein family HMM TIGR03214; hypothetical protein 593108 423368000763 SNSL254_A0579 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039770.1 592323 R 423368 CDS YP_002039771.1 194443732 complement(593119..594354) 1 NC_011080.1 'allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide'; allantoate amidohydrolase 594354 allC 423368000764 allC Salmonella enterica subsp. enterica serovar Newport str. SL254 allantoate amidohydrolase YP_002039771.1 593119 R 423368 CDS YP_002039772.1 194444226 complement(594376..595425) 1 NC_011080.1 identified by match to protein family HMM PF02615; match to protein family HMM TIGR03175; ureidoglycolate dehydrogenase 595425 allD 423368000765 allD Salmonella enterica subsp. enterica serovar Newport str. SL254 ureidoglycolate dehydrogenase YP_002039772.1 594376 R 423368 CDS YP_002039773.1 194442658 595741..597405 1 NC_011080.1 multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 597405 423368000766 SNSL254_A0582 Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane protein FdrA YP_002039773.1 595741 D 423368 CDS YP_002039774.1 194445773 597415..598674 1 NC_011080.1 identified by match to protein family HMM PF06545; hypothetical protein 598674 423368000767 SNSL254_A0583 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039774.1 597415 D 423368 CDS YP_002039775.1 194446268 598686..599495 1 NC_011080.1 hypothetical protein 599495 423368000768 SNSL254_A0584 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039775.1 598686 D 423368 CDS YP_002039776.1 194446464 599499..600392 1 NC_011080.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00746; carbamate kinase 600392 arcC 423368000769 arcC Salmonella enterica subsp. enterica serovar Newport str. SL254 carbamate kinase YP_002039776.1 599499 D 423368 CDS YP_002039777.1 194442231 complement(600433..601500) 1 NC_011080.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 601500 purK 423368000770 purK Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_002039777.1 600433 R 423368 CDS YP_002039778.1 194442908 complement(601497..602006) 1 NC_011080.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 602006 purE 423368000771 purE Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_002039778.1 601497 R 423368 CDS YP_002039779.1 194443705 complement(602124..602846) 1 NC_011080.1 'catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine'; UDP-2,3-diacylglucosamine hydrolase 602846 lpxH 423368000772 lpxH Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-2,3-diacylglucosamine hydrolase YP_002039779.1 602124 R 423368 CDS YP_002039780.1 194443220 complement(602849..603343) 1 NC_011080.1 identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 603343 ppiB 423368000773 ppiB Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidyl-prolyl cis-trans isomerase B YP_002039780.1 602849 R 423368 CDS YP_002039781.1 194442819 603516..604901 1 NC_011080.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 604901 cysS 423368000774 cysS Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteinyl-tRNA synthetase YP_002039781.1 603516 D 423368 CDS YP_002039782.1 194443408 complement(604945..605769) 1 NC_011080.1 hypothetical protein 605769 423368000775 SNSL254_A0591 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039782.1 604945 R 423368 CDS YP_002039783.1 194444131 complement(605766..606203) 1 NC_011080.1 hypothetical protein 606203 423368000776 SNSL254_A0592 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039783.1 605766 R 423368 CDS YP_002039784.1 194444658 complement(606196..606741) 1 NC_011080.1 identified by match to protein family HMM PF04307; hypothetical protein 606741 423368000777 SNSL254_A0593 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039784.1 606196 R 423368 CDS YP_002039785.1 194445480 complement(606868..607080) 1 NC_011080.1 hypothetical protein 607080 423368000778 SNSL254_A0594 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039785.1 606868 R 423368 CDS YP_002039786.1 194444557 complement(607082..607948) 1 NC_011080.1 'catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate'; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 607948 folD 423368000779 folD Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_002039786.1 607082 R 423368 CDS YP_002039787.1 194444389 608495..609052 1 NC_011080.1 identified by match to protein family HMM PF00419; type-1 fimbrial protein subunit A 609052 423368000780 SNSL254_A0596 Salmonella enterica subsp. enterica serovar Newport str. SL254 type-1 fimbrial protein subunit A YP_002039787.1 608495 D 423368 CDS YP_002039788.1 194443606 609167..609661 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial protein 609661 423368000781 SNSL254_A0597 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial protein YP_002039788.1 609167 D 423368 CDS YP_002039789.1 194442825 609705..610397 1 NC_011080.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 610397 423368000782 SNSL254_A0598 Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone protein FimC YP_002039789.1 609705 D 423368 CDS YP_002039790.1 194442998 610428..613040 1 NC_011080.1 identified by match to protein family HMM PF00577; fimbrial usher protein 613040 423368000783 SNSL254_A0599 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial usher protein YP_002039790.1 610428 D 423368 CDS YP_002039791.1 194442424 613055..614062 1 NC_011080.1 mannose binding protein FimH 614062 423368000784 SNSL254_A0600 Salmonella enterica subsp. enterica serovar Newport str. SL254 mannose binding protein FimH YP_002039791.1 613055 D 423368 CDS YP_002039792.1 194446058 614072..614590 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial protein 614590 423368000785 SNSL254_A0601 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial protein YP_002039792.1 614072 D 423368 CDS YP_002039793.1 194445419 complement(614636..615268) 1 NC_011080.1 activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ 615268 423368000786 SNSL254_A0602 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator FimZ YP_002039793.1 614636 R 423368 CDS YP_002039794.1 194443570 complement(615872..616594) 1 NC_011080.1 fimbriae Y protein 616594 423368000787 SNSL254_A0603 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbriae Y protein YP_002039794.1 615872 R 423368 CDS YP_002039795.2 448967505 complement(616613..616924) 1 NC_011080.1 hypothetical protein 616924 423368000788 SNSL254_A0604 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039795.2 616613 R 423368 CDS YP_002039796.1 194442310 complement(617086..617682) 1 NC_011080.1 fimbriae W protein 617682 423368000789 SNSL254_A0605 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbriae W protein YP_002039796.1 617086 R 423368 CDS YP_002039797.1 194443811 complement(619044..620855) 1 NC_011080.1 hypothetical protein 620855 423368000791 SNSL254_A0607 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039797.1 619044 R 423368 CDS YP_002039798.1 194443593 complement(620852..621772) 1 NC_011080.1 identified by match to protein family HMM PF00535; glycosyl transferase 621772 423368000792 SNSL254_A0608 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl transferase YP_002039798.1 620852 R 423368 CDS YP_002039799.1 194443967 complement(621769..622131) 1 NC_011080.1 identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase 622131 423368000793 SNSL254_A0609 Salmonella enterica subsp. enterica serovar Newport str. SL254 bactoprenol-linked glucose translocase YP_002039799.1 621769 R 423368 CDS YP_002039800.1 194445456 complement(622863..622985) 1 NC_011080.1 identified by glimmer; hypothetical protein 622985 423368000794 SNSL254_A0611 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039800.1 622863 R 423368 CDS YP_002039801.1 194444798 623427..623684 1 NC_011080.1 cation efflux system protein CusA 623684 423368000795 SNSL254_A0613 Salmonella enterica subsp. enterica serovar Newport str. SL254 cation efflux system protein CusA YP_002039801.1 623427 D 423368 CDS YP_002039802.1 194446788 complement(623665..624519) 1 NC_011080.1 identified by match to protein family HMM PF00165; araC family transcriptional regulator 624519 423368000796 SNSL254_A0614 Salmonella enterica subsp. enterica serovar Newport str. SL254 araC family transcriptional regulator YP_002039802.1 623665 R 423368 CDS YP_002039803.1 194445461 624735..626060 1 NC_011080.1 Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 626060 423368000797 SNSL254_A0615 Salmonella enterica subsp. enterica serovar Newport str. SL254 pyridine nucleotide-disulfide oxidoreductase YP_002039803.1 624735 D 423368 CDS YP_002039804.1 194443523 complement(626111..626233) 1 NC_011080.1 identified by glimmer; hypothetical protein 626233 423368000798 SNSL254_A0617 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039804.1 626111 R 423368 CDS YP_002039805.1 194442914 626217..626453 1 NC_011080.1 identified by match to protein family HMM PF07338; hypothetical protein 626453 423368000799 SNSL254_A0616 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039805.1 626217 D 423368 CDS YP_002039806.1 194442272 626466..627026 1 NC_011080.1 identified by match to protein family HMM PF04224; hypothetical protein 627026 423368000800 SNSL254_A0618 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039806.1 626466 D 423368 CDS YP_002039807.1 194446127 complement(627105..628280) 1 NC_011080.1 molecular chaperone DnaJ 628280 423368000801 SNSL254_A0619 Salmonella enterica subsp. enterica serovar Newport str. SL254 molecular chaperone DnaJ YP_002039807.1 627105 R 423368 CDS YP_002039808.1 194444869 628606..630000 1 NC_011080.1 identified by match to protein family HMM PF00324; phenylalanine transporter 630000 423368000802 SNSL254_A0620 Salmonella enterica subsp. enterica serovar Newport str. SL254 phenylalanine transporter YP_002039808.1 628606 D 423368 CDS YP_002039809.1 194444678 complement(630042..631289) 1 NC_011080.1 identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel transporter 631289 423368000803 SNSL254_A0621 Salmonella enterica subsp. enterica serovar Newport str. SL254 small conductance mechanosensitive ion channel transporter YP_002039809.1 630042 R 423368 CDS YP_002039810.1 194445353 631319..631501 1 NC_011080.1 hypothetical protein 631501 423368000804 SNSL254_A0622 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039810.1 631319 D 423368 CDS YP_002039811.1 194443366 631600..633570 1 NC_011080.1 identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414; lipase 1 633570 423368000805 SNSL254_A0623 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipase 1 YP_002039811.1 631600 D 423368 CDS YP_002039812.1 194442284 633737..636466 1 NC_011080.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF07728; ATPase AAA 636466 423368000806 SNSL254_A0624 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATPase AAA YP_002039812.1 633737 D 423368 CDS YP_002039813.1 194442909 complement(636594..637580) 1 NC_011080.1 identified by match to protein family HMM PF01380; sugar isomerase 637580 423368000807 SNSL254_A0625 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar isomerase YP_002039813.1 636594 R 423368 CDS YP_002039814.1 194446377 complement(637647..638708) 1 NC_011080.1 identified by match to protein family HMM PF01380; sugar isomerase 638708 423368000808 SNSL254_A0626 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar isomerase YP_002039814.1 637647 R 423368 CDS YP_002039815.1 194442991 complement(638723..639577) 1 NC_011080.1 identified by match to protein family HMM PF03613; PTS system mannose-specific transporter subunit IID 639577 423368000809 SNSL254_A0627 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system mannose-specific transporter subunit IID YP_002039815.1 638723 R 423368 CDS YP_002039816.1 194442496 complement(639580..640323) 1 NC_011080.1 identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC 640323 423368000810 SNSL254_A0628 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system sorbose-specific transporter subunit IIC YP_002039816.1 639580 R 423368 CDS YP_002039817.1 194444410 complement(640338..640808) 1 NC_011080.1 identified by match to protein family HMM PF03830; PTS system sorbose-specific transporter subunit IIB 640808 423368000811 SNSL254_A0629 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system sorbose-specific transporter subunit IIB YP_002039817.1 640338 R 423368 CDS YP_002039818.1 194443911 complement(640786..641235) 1 NC_011080.1 identified by match to protein family HMM PF03610; PTS system mannose-specific transporter subunit IIAB 641235 423368000812 SNSL254_A0630 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system mannose-specific transporter subunit IIAB YP_002039818.1 640786 R 423368 CDS YP_002039819.1 194443894 complement(641435..642088) 1 NC_011080.1 'catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive'; dihydropteridine reductase 642088 423368000813 SNSL254_A0631 Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydropteridine reductase YP_002039819.1 641435 R 423368 CDS YP_002039820.1 194444546 complement(642185..642553) 1 NC_011080.1 identified by match to protein family HMM PF04237; hypothetical protein 642553 423368000814 SNSL254_A0632 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039820.1 642185 R 423368 CDS YP_002039821.1 194446317 complement(642553..643134) 1 NC_011080.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 643134 423368000815 SNSL254_A0633 Salmonella enterica subsp. enterica serovar Newport str. SL254 TetR family transcriptional regulator YP_002039821.1 642553 R 423368 CDS YP_002039822.1 194445815 643423..643764 1 NC_011080.1 identified by match to protein family HMM PF00165; transposon Tn10 TetD protein 643764 423368000816 SNSL254_A0634 Salmonella enterica subsp. enterica serovar Newport str. SL254 transposon Tn10 TetD protein YP_002039822.1 643423 D 423368 CDS YP_002039823.1 194443494 complement(643770..643994) 1 NC_011080.1 hypothetical protein 643994 423368000817 SNSL254_A0635 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039823.1 643770 R 423368 CDS YP_002039824.1 194442962 complement(644085..645203) 1 NC_011080.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 645203 423368000818 SNSL254_A0636 Salmonella enterica subsp. enterica serovar Newport str. SL254 carboxylate-amine ligase YP_002039824.1 644085 R 423368 CDS YP_002039825.1 194442468 complement(645215..645919) 1 NC_011080.1 identified by match to protein family HMM PF01648; enterobactin synthase multienzyme complex phosphopantetheinyltransferase 645919 423368000819 SNSL254_A0637 Salmonella enterica subsp. enterica serovar Newport str. SL254 enterobactin synthase multienzyme complex phosphopantetheinyltransferase YP_002039825.1 645215 R 423368 CDS YP_002039826.1 194444250 complement(645966..648221) 1 NC_011080.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 648221 423368000820 SNSL254_A0638 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane receptor FepA YP_002039826.1 645966 R 423368 CDS YP_002039827.1 194443721 648410..649624 1 NC_011080.1 identified by match to protein family HMM PF00756; enterobactin/ferric enterobactin esterase 649624 423368000821 SNSL254_A0639 Salmonella enterica subsp. enterica serovar Newport str. SL254 enterobactin/ferric enterobactin esterase YP_002039827.1 648410 D 423368 CDS YP_002039828.1 194445538 649655..649873 1 NC_011080.1 identified by match to protein family HMM PF03621; hypothetical protein 649873 423368000822 SNSL254_A0640 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039828.1 649655 D 423368 CDS YP_002039829.1 194446023 649870..653754 1 NC_011080.1 'with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin'; enterobactin synthase subunit F 653754 entF 423368000823 entF Salmonella enterica subsp. enterica serovar Newport str. SL254 enterobactin synthase subunit F YP_002039829.1 649870 D 423368 CDS YP_002039830.1 194443221 654004..655140 1 NC_011080.1 part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 655140 423368000824 SNSL254_A0642 Salmonella enterica subsp. enterica serovar Newport str. SL254 ferric enterobactin transport protein FepE YP_002039830.1 654004 D 423368 CDS YP_002039831.1 194442727 complement(655193..655987) 1 NC_011080.1 with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein 655987 423368000825 SNSL254_A0643 Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-enterobactin transporter ATP-binding protein YP_002039831.1 655193 R 423368 CDS YP_002039832.1 194442251 complement(655984..656973) 1 NC_011080.1 with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease 656973 423368000826 SNSL254_A0644 Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-enterobactin transporter permease YP_002039832.1 655984 R 423368 CDS YP_002039833.1 194444009 complement(656973..657980) 1 NC_011080.1 with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein 657980 423368000827 SNSL254_A0645 Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-enterobactin transporter membrane protein YP_002039833.1 656973 R 423368 CDS YP_002039834.1 194444324 658091..659335 1 NC_011080.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 659335 423368000828 SNSL254_A0646 Salmonella enterica subsp. enterica serovar Newport str. SL254 enterobactin exporter EntS YP_002039834.1 658091 D 423368 CDS YP_002039835.1 194446134 complement(659398..660354) 1 NC_011080.1 with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 660354 423368000829 SNSL254_A0647 Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-enterobactin transporter periplasmic binding protein YP_002039835.1 659398 R 423368 CDS YP_002039836.1 194443319 660663..661838 1 NC_011080.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase EntC 661838 423368000830 SNSL254_A0648 Salmonella enterica subsp. enterica serovar Newport str. SL254 isochorismate synthase EntC YP_002039836.1 660663 D 423368 CDS YP_002039837.1 194444600 661848..663458 1 NC_011080.1 'bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate'; enterobactin synthase subunit E 663458 entE 423368000831 entE Salmonella enterica subsp. enterica serovar Newport str. SL254 enterobactin synthase subunit E YP_002039837.1 661848 D 423368 CDS YP_002039838.1 194446405 663472..664329 1 NC_011080.1 identified by match to protein family HMM PF00550; match to protein family HMM PF00857; isochorismatase 664329 entB 423368000832 entB Salmonella enterica subsp. enterica serovar Newport str. SL254 isochorismatase YP_002039838.1 663472 D 423368 CDS YP_002039839.1 194444090 664329..665084 1 NC_011080.1 'catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin'; 2,3-dihydroxybenzoate-2,3-dehydrogenase 665084 entA 423368000833 entA Salmonella enterica subsp. enterica serovar Newport str. SL254 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_002039839.1 664329 D 423368 CDS YP_002039840.1 194442334 665087..665500 1 NC_011080.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 665500 423368000834 SNSL254_A0652 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039840.1 665087 D 423368 CDS YP_002039841.1 194443275 665682..667787 1 NC_011080.1 identified by match to protein family HMM PF02554; carbon starvation protein A 667787 cstA 423368000835 cstA Salmonella enterica subsp. enterica serovar Newport str. SL254 carbon starvation protein A YP_002039841.1 665682 D 423368 CDS YP_002039842.1 194446120 667851..668048 1 NC_011080.1 identified by match to protein family HMM PF04328; hypothetical protein 668048 423368000836 SNSL254_A0654 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039842.1 667851 D 423368 CDS YP_002039843.1 194446631 complement(668084..669172) 1 NC_011080.1 member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein 669172 423368000837 SNSL254_A0655 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039843.1 668084 R 423368 CDS YP_002039844.1 194444611 669290..670459 1 NC_011080.1 catalyzes the transfer of an amino moiety; aminotransferase 670459 423368000838 SNSL254_A0656 Salmonella enterica subsp. enterica serovar Newport str. SL254 aminotransferase YP_002039844.1 669290 D 423368 CDS YP_002039845.1 194445460 complement(670460..671077) 1 NC_011080.1 identified by match to protein family HMM PF02195; IbrB protein 671077 423368000839 SNSL254_A0657 Salmonella enterica subsp. enterica serovar Newport str. SL254 IbrB protein YP_002039845.1 670460 R 423368 CDS YP_002039846.1 194443779 complement(671050..672285) 1 NC_011080.1 identified by match to protein family HMM PF01507; IbrA protein 672285 423368000840 SNSL254_A0658 Salmonella enterica subsp. enterica serovar Newport str. SL254 IbrA protein YP_002039846.1 671050 R 423368 CDS YP_002039847.1 194443577 complement(672451..673311) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 673311 423368000841 SNSL254_A0659 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002039847.1 672451 R 423368 CDS YP_002039848.2 448967506 complement(673670..674416) 1 NC_011080.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 674416 dsbG 423368000842 dsbG Salmonella enterica subsp. enterica serovar Newport str. SL254 disulfide isomerase/thiol-disulfide oxidase YP_002039848.2 673670 R 423368 CDS YP_002039849.1 194442213 674857..675420 1 NC_011080.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase 675420 ahpC 423368000843 ahpC Salmonella enterica subsp. enterica serovar Newport str. SL254 alkyl hydroperoxide reductase YP_002039849.1 674857 D 423368 CDS YP_007419096.1 448967507 675662..677227 1 NC_011080.1 alkyl hydroperoxide reductase subunit F 677227 ahpF 423368000844 ahpF Salmonella enterica subsp. enterica serovar Newport str. SL254 alkyl hydroperoxide reductase subunit F YP_007419096.1 675662 D 423368 CDS YP_002039850.1 194446123 677560..678120 1 NC_011080.1 identified by match to protein family HMM PF06192; anaerobic dehydrogenase subunit 678120 423368000845 SNSL254_A0663 Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic dehydrogenase subunit YP_002039850.1 677560 D 423368 CDS YP_002039851.1 194446791 678113..680392 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; molybdopterin-containing oxidoreductase catalytic subunit 680392 423368000846 SNSL254_A0664 Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdopterin-containing oxidoreductase catalytic subunit YP_002039851.1 678113 D 423368 CDS YP_002039852.1 194444851 680389..680946 1 NC_011080.1 identified by match to protein family HMM PF00037; molybdopterin-containing oxidoreductase iron-sulfur subunit 680946 423368000847 SNSL254_A0665 Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdopterin-containing oxidoreductase iron-sulfur subunit YP_002039852.1 680389 D 423368 CDS YP_002039853.1 194446121 680946..681713 1 NC_011080.1 molybdopterin-containing oxidoreductase membrane anchor subunit 681713 423368000848 SNSL254_A0666 Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdopterin-containing oxidoreductase membrane anchor subunit YP_002039853.1 680946 D 423368 CDS YP_002039854.2 448967508 complement(681781..682209) 1 NC_011080.1 universal stress protein G 682209 423368000849 SNSL254_A0667 Salmonella enterica subsp. enterica serovar Newport str. SL254 universal stress protein G YP_002039854.2 681781 R 423368 CDS YP_002039855.1 194444708 682432..683670 1 NC_011080.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; molecular chaperone GroES 683670 423368000850 SNSL254_A0669 Salmonella enterica subsp. enterica serovar Newport str. SL254 molecular chaperone GroES YP_002039855.1 682432 D 423368 CDS YP_002039856.1 194444344 complement(683753..684163) 1 NC_011080.1 'Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation'; nucleoside diphosphate kinase regulator 684163 423368000851 SNSL254_A0670 Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoside diphosphate kinase regulator YP_002039856.1 683753 R 423368 CDS YP_002039857.1 194444139 complement(684398..685204) 1 NC_011080.1 ribonuclease I 685204 423368000852 SNSL254_A0671 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease I YP_002039857.1 684398 R 423368 CDS YP_002039858.1 194443541 complement(685314..686777) 1 NC_011080.1 identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; sodium:sulfate symporter family protein 686777 423368000853 SNSL254_A0672 Salmonella enterica subsp. enterica serovar Newport str. SL254 sodium:sulfate symporter family protein YP_002039858.1 685314 R 423368 CDS YP_002039859.1 194442851 complement(686815..687711) 1 NC_011080.1 catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 687711 citG 423368000854 citG Salmonella enterica subsp. enterica serovar Newport str. SL254 triphosphoribosyl-dephospho-CoA synthase YP_002039859.1 686815 R 423368 CDS YP_002039860.1 194442215 complement(687683..688234) 1 NC_011080.1 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 688234 citX 423368000855 citX Salmonella enterica subsp. enterica serovar Newport str. SL254 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase YP_002039860.1 687683 R 423368 CDS YP_002039861.1 194446620 complement(688238..689767) 1 NC_011080.1 identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha 689767 citF 423368000856 citF Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate lyase subunit alpha YP_002039861.1 688238 R 423368 CDS YP_002039862.1 194446423 complement(689777..690685) 1 NC_011080.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta 690685 citE 423368000857 citE Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate (pro-3S)-lyase subunit beta YP_002039862.1 689777 R 423368 CDS YP_002039863.1 194446422 complement(690682..690978) 1 NC_011080.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 690978 citD 423368000858 citD Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate lyase subunit gamma YP_002039863.1 690682 R 423368 CDS YP_002039864.1 194445889 complement(690975..692051) 1 NC_011080.1 identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase 692051 citC 423368000859 citC Salmonella enterica subsp. enterica serovar Newport str. SL254 [citrate (pro-3S)-lyase] ligase YP_002039864.1 690975 R 423368 CDS YP_002039865.1 194442515 692262..692426 1 NC_011080.1 hypothetical protein 692426 423368000860 SNSL254_A0679 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039865.1 692262 D 423368 CDS YP_002039866.1 194444298 692436..694097 1 NC_011080.1 identified by match to protein family HMM PF02518; sensor kinase DpiB 694097 423368000861 SNSL254_A0680 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor kinase DpiB YP_002039866.1 692436 D 423368 CDS YP_002039867.1 194444293 694066..694746 1 NC_011080.1 regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 694746 dpiA 423368000862 dpiA Salmonella enterica subsp. enterica serovar Newport str. SL254 two-component response regulator DpiA YP_002039867.1 694066 D 423368 CDS YP_002039868.1 194443774 complement(694800..696230) 1 NC_011080.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 696230 dcuC 423368000863 dcuC Salmonella enterica subsp. enterica serovar Newport str. SL254 C4-dicarboxylate transporter DcuC YP_002039868.1 694800 R 423368 CDS YP_002039869.1 194445142 696576..697136 1 NC_011080.1 catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 697136 pagP 423368000864 pagP Salmonella enterica subsp. enterica serovar Newport str. SL254 palmitoyl transferase YP_002039869.1 696576 D 423368 CDS YP_002039870.1 194444501 697324..697533 1 NC_011080.1 member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 697533 cspE 423368000865 cspE Salmonella enterica subsp. enterica serovar Newport str. SL254 cold shock protein CspE YP_002039870.1 697324 D 423368 CDS YP_002039871.1 194444517 complement(697591..697974) 1 NC_011080.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 697974 crcB 423368000866 crcB Salmonella enterica subsp. enterica serovar Newport str. SL254 camphor resistance protein CrcB YP_002039871.1 697591 R 423368 CDS YP_002039872.1 194444540 698065..698853 1 NC_011080.1 identified by match to protein family HMM PF00795; hydrolase YbeM 698853 423368000867 SNSL254_A0686 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrolase YbeM YP_002039872.1 698065 D 423368 CDS YP_002039873.1 194444518 698982..699185 1 NC_011080.1 TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein E 699185 tatE 423368000868 tatE Salmonella enterica subsp. enterica serovar Newport str. SL254 twin arginine translocase protein E YP_002039873.1 698982 D 423368 CDS YP_002039874.1 194443853 complement(699271..700236) 1 NC_011080.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 700236 lipA 423368000869 lipA Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoyl synthase YP_002039874.1 699271 R 423368 CDS YP_002039875.1 194443200 complement(700277..700411) 1 NC_011080.1 identified by glimmer; hypothetical protein 700411 423368000870 SNSL254_A0689 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039875.1 700277 R 423368 CDS YP_002039876.1 194442555 complement(700442..701395) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 701395 423368000871 SNSL254_A0690 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator YP_002039876.1 700442 R 423368 CDS YP_002039877.1 194443733 complement(701697..702338) 1 NC_011080.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 702338 lipB 423368000872 lipB Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoate-protein ligase B YP_002039877.1 701697 R 423368 CDS YP_002039878.1 194444385 complement(702438..702701) 1 NC_011080.1 identified by match to protein family HMM PF04359; hypothetical protein 702701 423368000873 SNSL254_A0692 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039878.1 702438 R 423368 CDS YP_002039879.1 194442745 complement(702810..704021) 1 NC_011080.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase 704021 dacA 423368000874 dacA Salmonella enterica subsp. enterica serovar Newport str. SL254 D-alanyl-D-alanine carboxypeptidase YP_002039879.1 702810 R 423368 CDS YP_002039880.1 194442270 complement(704161..705294) 1 NC_011080.1 identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A 705294 423368000875 SNSL254_A0694 Salmonella enterica subsp. enterica serovar Newport str. SL254 rare lipoprotein A YP_002039880.1 704161 R 423368 CDS YP_002039881.1 194445742 complement(705305..706417) 1 NC_011080.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; cell wall shape-determining protein 706417 mrdB 423368000876 mrdB Salmonella enterica subsp. enterica serovar Newport str. SL254 cell wall shape-determining protein YP_002039881.1 705305 R 423368 CDS YP_002039882.1 194445890 complement(706420..708321) 1 NC_011080.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 708321 mrdA 423368000877 mrdA Salmonella enterica subsp. enterica serovar Newport str. SL254 penicillin-binding protein 2 YP_002039882.1 706420 R 423368 CDS YP_002039883.1 194445986 complement(708352..708819) 1 NC_011080.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 708819 423368000878 SNSL254_A0697 Salmonella enterica subsp. enterica serovar Newport str. SL254 rRNA large subunit methyltransferase YP_002039883.1 708352 R 423368 CDS YP_002039884.1 194442305 complement(708823..709140) 1 NC_011080.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein 709140 423368000879 SNSL254_A0698 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039884.1 708823 R 423368 CDS YP_002039885.1 194446428 complement(709329..709469) 1 NC_011080.1 identified by glimmer; hypothetical protein 709469 423368000880 SNSL254_A0699 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039885.1 709329 R 423368 CDS YP_002039886.1 194443964 complement(709469..710077) 1 NC_011080.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162; alpha-ribazole-5'-phosphate phosphatase 710077 cobC 423368000881 cobC Salmonella enterica subsp. enterica serovar Newport str. SL254 alpha-ribazole-5'-phosphate phosphatase YP_002039886.1 709469 R 423368 CDS YP_002039887.1 194445568 710174..711268 1 NC_011080.1 'cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase'; threonine-phosphate decarboxylase 711268 423368000882 SNSL254_A0701 Salmonella enterica subsp. enterica serovar Newport str. SL254 threonine-phosphate decarboxylase YP_002039887.1 710174 D 423368 CDS YP_002039888.1 194443443 complement(711243..711893) 1 NC_011080.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 711893 nadD 423368000883 nadD Salmonella enterica subsp. enterica serovar Newport str. SL254 nicotinic acid mononucleotide adenylyltransferase YP_002039888.1 711243 R 423368 CDS YP_002039889.1 194445031 complement(711886..712917) 1 NC_011080.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 712917 holA 423368000884 holA Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase III subunit delta YP_002039889.1 711886 R 423368 CDS YP_002039890.1 194442518 complement(712917..713507) 1 NC_011080.1 rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB 713507 423368000885 SNSL254_A0704 Salmonella enterica subsp. enterica serovar Newport str. SL254 LPS-assembly lipoprotein RlpB YP_002039890.1 712917 R 423368 CDS YP_002039891.1 194446717 complement(713522..716104) 1 NC_011080.1 'leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase'; leucyl-tRNA synthetase 716104 leuS 423368000886 leuS Salmonella enterica subsp. enterica serovar Newport str. SL254 leucyl-tRNA synthetase YP_002039891.1 713522 R 423368 CDS YP_002039892.1 194443151 716392..716682 1 NC_011080.1 identified by match to protein family HMM PF08666; UxaA family hydrolase 716682 423368000887 SNSL254_A0706 Salmonella enterica subsp. enterica serovar Newport str. SL254 UxaA family hydrolase YP_002039892.1 716392 D 423368 CDS YP_002039893.1 194445835 716645..717871 1 NC_011080.1 identified by match to protein family HMM PF04295; UxaA family hydrolase 717871 423368000888 SNSL254_A0707 Salmonella enterica subsp. enterica serovar Newport str. SL254 UxaA family hydrolase YP_002039893.1 716645 D 423368 CDS YP_002039894.1 194444287 717921..718874 1 NC_011080.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 718874 423368000889 SNSL254_A0708 Salmonella enterica subsp. enterica serovar Newport str. SL254 2-keto-3-deoxygluconate permease YP_002039894.1 717921 D 423368 CDS YP_002039895.1 194442495 718942..720870 1 NC_011080.1 identified by match to protein family HMM PF00158; match to protein family HMM PF06506; sigma-54 dependent transcriptional regulator 720870 423368000890 SNSL254_A0709 Salmonella enterica subsp. enterica serovar Newport str. SL254 sigma-54 dependent transcriptional regulator YP_002039895.1 718942 D 423368 CDS YP_002039896.1 194444738 720963..721436 1 NC_011080.1 identified by match to protein family HMM PF07295; hypothetical protein 721436 423368000891 SNSL254_A0710 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039896.1 720963 D 423368 CDS YP_002039897.1 194445235 complement(721475..722470) 1 NC_011080.1 identified by match to protein family HMM PF08238; Sel1 repeat family 722470 423368000892 SNSL254_A0711 Salmonella enterica subsp. enterica serovar Newport str. SL254 Sel1 repeat family YP_002039897.1 721475 R 423368 CDS YP_002039898.1 194445794 722688..723302 1 NC_011080.1 identified by match to protein family HMM PF06889; hypothetical protein 723302 423368000893 SNSL254_A0712 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039898.1 722688 D 423368 CDS YP_002039899.1 194446274 723299..724732 1 NC_011080.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 724732 423368000894 SNSL254_A0713 Salmonella enterica subsp. enterica serovar Newport str. SL254 DnaJ domain-containing protein YP_002039899.1 723299 D 423368 CDS YP_002039900.1 194442720 724744..725439 1 NC_011080.1 identified by match to protein family HMM PF06889; hypothetical protein 725439 423368000895 SNSL254_A0714 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039900.1 724744 D 423368 CDS YP_002039901.1 194443222 725436..726908 1 NC_011080.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 726908 423368000896 SNSL254_A0715 Salmonella enterica subsp. enterica serovar Newport str. SL254 DnaJ domain-containing protein YP_002039901.1 725436 D 423368 CDS YP_002039902.1 194442969 complement(726930..728609) 1 NC_011080.1 identified by match to protein family HMM PF00012; chaperone protein HscC 728609 423368000897 SNSL254_A0716 Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone protein HscC YP_002039902.1 726930 R 423368 CDS YP_002039903.1 194443581 complement(728685..729923) 1 NC_011080.1 hypothetical protein 729923 423368000898 SNSL254_A0717 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039903.1 728685 R 423368 CDS YP_002039904.1 194445998 complement(729955..730890) 1 NC_011080.1 'Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific'; ribonucleoside hydrolase 1 730890 rihA 423368000899 rihA Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonucleoside hydrolase 1 YP_002039904.1 729955 R 423368 CDS YP_002039905.1 194446621 complement(731007..731732) 1 NC_011080.1 identified by match to protein family HMM PF00005; glutamate/aspartate ABC transporter ATP-binding protein 731732 gltL 423368000900 gltL Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate/aspartate ABC transporter ATP-binding protein YP_002039905.1 731007 R 423368 CDS YP_002039906.1 194444936 complement(731732..732406) 1 NC_011080.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltK 732406 gltK 423368000901 gltK Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate/aspartate ABC transporter permease GltK YP_002039906.1 731732 R 423368 CDS YP_002039907.1 194445140 complement(732406..733146) 1 NC_011080.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltJ 733146 gltJ 423368000902 gltJ Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate/aspartate ABC transporter permease GltJ YP_002039907.1 732406 R 423368 CDS YP_002039908.1 194443341 complement(733306..734214) 1 NC_011080.1 identified by match to protein family HMM PF00497; glutamate and aspartate transporter subunit 734214 gltI 423368000904 gltI Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate and aspartate transporter subunit YP_002039908.1 733306 R 423368 CDS YP_002039909.1 194444167 complement(734298..734552) 1 NC_011080.1 identified by glimmer; hypothetical protein 734552 423368000905 SNSL254_A0724 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039909.1 734298 R 423368 CDS YP_002039910.1 194442405 complement(734569..736158) 1 NC_011080.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 736158 lnt 423368000906 lnt Salmonella enterica subsp. enterica serovar Newport str. SL254 apolipoprotein N-acyltransferase YP_002039910.1 734569 R 423368 CDS YP_002039911.1 194443019 complement(736127..737005) 1 NC_011080.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC 737005 corC 423368000907 corC Salmonella enterica subsp. enterica serovar Newport str. SL254 magnesium and cobalt efflux protein CorC YP_002039911.1 736127 R 423368 CDS YP_002039912.1 194443004 complement(737163..737636) 1 NC_011080.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease 737636 423368000908 SNSL254_A0727 Salmonella enterica subsp. enterica serovar Newport str. SL254 metalloprotease YP_002039912.1 737163 R 423368 CDS YP_002039913.1 194442235 complement(737633..738679) 1 NC_011080.1 identified by match to protein family HMM PF02562; PhoH family protein 738679 423368000909 SNSL254_A0728 Salmonella enterica subsp. enterica serovar Newport str. SL254 PhoH family protein YP_002039913.1 737633 R 423368 CDS YP_002039914.1 194446753 complement(738884..740308) 1 NC_011080.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 740308 miaB 423368000910 miaB Salmonella enterica subsp. enterica serovar Newport str. SL254 (dimethylallyl)adenosine tRNA methylthiotransferase YP_002039914.1 738884 R 423368 CDS YP_002039915.1 194446092 740452..741627 1 NC_011080.1 'catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q'; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 741627 ubiF 423368000911 ubiF Salmonella enterica subsp. enterica serovar Newport str. SL254 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_002039915.1 740452 D 423368 CDS YP_002039916.1 194445479 complement(741694..742269) 1 NC_011080.1 hypothetical protein 742269 423368000912 SNSL254_A0731 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039916.1 741694 R 423368 CDS YP_002039917.1 194444808 complement(743336..745000) 1 NC_011080.1 'functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP'; asparagine synthetase B 745000 asnB 423368000920 asnB Salmonella enterica subsp. enterica serovar Newport str. SL254 asparagine synthetase B YP_002039917.1 743336 R 423368 CDS YP_002039918.1 194443615 complement(745290..746042) 1 NC_011080.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; UMP phosphatase 746042 423368000921 SNSL254_A0740 Salmonella enterica subsp. enterica serovar Newport str. SL254 UMP phosphatase YP_002039918.1 745290 R 423368 CDS YP_002039919.1 194442984 complement(746089..747309) 1 NC_011080.1 identified by match to protein family HMM PF00480; N-acetylglucosamine repressor 747309 nagC 423368000922 nagC Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylglucosamine repressor YP_002039919.1 746089 R 423368 CDS YP_002039920.1 194442673 complement(747314..748468) 1 NC_011080.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 748468 nagA 423368000923 nagA Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylglucosamine-6-phosphate deacetylase YP_002039920.1 747314 R 423368 CDS YP_002039921.1 194446341 complement(748528..749328) 1 NC_011080.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 749328 nagB 423368000924 nagB Salmonella enterica subsp. enterica serovar Newport str. SL254 glucosamine-6-phosphate deaminase YP_002039921.1 748528 R 423368 CDS YP_002039922.1 194444609 749655..751607 1 NC_011080.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunit IIABC 751607 nagE 423368000925 nagE Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system N-acetyl glucosamine specific transporter subunit IIABC YP_002039922.1 749655 D 423368 CDS YP_002039923.1 194446155 751818..753485 1 NC_011080.1 'catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; glutaminyl-tRNA synthetase 753485 glnS 423368000926 glnS Salmonella enterica subsp. enterica serovar Newport str. SL254 glutaminyl-tRNA synthetase YP_002039923.1 751818 D 423368 CDS YP_002039924.1 194442903 754146..755552 1 NC_011080.1 identified by match to protein family HMM PF03573; outer membrane porin, OprD family 755552 423368000927 SNSL254_A0746 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane porin, OprD family YP_002039924.1 754146 D 423368 CDS YP_002039925.1 194442252 755602..755934 1 NC_011080.1 hypothetical protein 755934 423368000928 SNSL254_A0747 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039925.1 755602 D 423368 CDS YP_002039926.1 194444148 complement(755983..757287) 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; citrate-proton symporter 757287 423368000929 SNSL254_A0748 Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate-proton symporter YP_002039926.1 755983 R 423368 CDS YP_002039927.1 194443530 complement(757338..758477) 1 NC_011080.1 identified by match to protein family HMM TIGR02484; citrate utilization protein B 758477 423368000930 SNSL254_A0749 Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate utilization protein B YP_002039927.1 757338 R 423368 CDS YP_002039928.1 194444782 complement(758464..759867) 1 NC_011080.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 759867 cobZ 423368000931 cobZ Salmonella enterica subsp. enterica serovar Newport str. SL254 tricarballylate dehydrogenase YP_002039928.1 758464 R 423368 CDS YP_002039929.1 194446525 complement(759965..760891) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 760891 423368000932 SNSL254_A0751 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002039929.1 759965 R 423368 CDS YP_002039930.1 194446107 complement(761006..761458) 1 NC_011080.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 761458 fur 423368000933 fur Salmonella enterica subsp. enterica serovar Newport str. SL254 ferric uptake regulator YP_002039930.1 761006 R 423368 CDS YP_002039931.1 194443131 complement(761740..762270) 1 NC_011080.1 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin FldA 762270 fldA 423368000934 fldA Salmonella enterica subsp. enterica serovar Newport str. SL254 flavodoxin FldA YP_002039931.1 761740 R 423368 CDS YP_002039932.1 194443369 complement(762421..762714) 1 NC_011080.1 identified by match to protein family HMM PF01402; LexA regulated protein 762714 423368000935 SNSL254_A0755 Salmonella enterica subsp. enterica serovar Newport str. SL254 LexA regulated protein YP_002039932.1 762421 R 423368 CDS YP_002039933.1 194444488 762713..762835 1 NC_011080.1 identified by glimmer; hypothetical protein 762835 423368000936 SNSL254_A0754 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039933.1 762713 D 423368 CDS YP_002039934.1 194443137 complement(762848..763618) 1 NC_011080.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07819; hypothetical protein 763618 ybfF 423368000937 ybfF Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039934.1 762848 R 423368 CDS YP_002039935.1 194445958 763803..764345 1 NC_011080.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 764345 seqA 423368000938 seqA Salmonella enterica subsp. enterica serovar Newport str. SL254 replication initiation regulator SeqA YP_002039935.1 763803 D 423368 CDS YP_002039936.1 194445942 764370..766010 1 NC_011080.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 766010 pgm 423368000939 pgm Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglucomutase YP_002039936.1 764370 D 423368 CDS YP_002039937.1 194446458 complement(766125..766610) 1 NC_011080.1 5-nitroimidazole antibiotic resistance 766610 423368000940 SNSL254_A0759 Salmonella enterica subsp. enterica serovar Newport str. SL254 5-nitroimidazole antibiotic resistance YP_002039937.1 766125 R 423368 CDS YP_002039938.1 194445116 complement(766675..767994) 1 NC_011080.1 'catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system'; putrescine transporter 767994 potE 423368000941 potE Salmonella enterica subsp. enterica serovar Newport str. SL254 putrescine transporter YP_002039938.1 766675 R 423368 CDS YP_002039939.1 194443613 complement(767991..770189) 1 NC_011080.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase 770189 423368000942 SNSL254_A0761 Salmonella enterica subsp. enterica serovar Newport str. SL254 ornithine decarboxylase YP_002039939.1 767991 R 423368 CDS YP_002039940.1 194444450 770587..770700 1 NC_011080.1 hypothetical protein 770700 423368000943 SNSL254_A0762 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039940.1 770587 D 423368 CDS YP_002039941.1 194442317 complement(770951..771628) 1 NC_011080.1 response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE 771628 423368000944 SNSL254_A0763 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator KdpE YP_002039941.1 770951 R 423368 CDS YP_002039942.1 194444856 complement(771625..774309) 1 NC_011080.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD 774309 423368000945 SNSL254_A0764 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor protein KdpD YP_002039942.1 771625 R 423368 CDS YP_002039943.1 194445430 complement(774306..774890) 1 NC_011080.1 'One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex'; potassium-transporting ATPase subunit C 774890 kdpC 423368000946 kdpC Salmonella enterica subsp. enterica serovar Newport str. SL254 potassium-transporting ATPase subunit C YP_002039943.1 774306 R 423368 CDS YP_002039944.1 194442615 complement(774899..776947) 1 NC_011080.1 'One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions'; potassium-transporting ATPase subunit B 776947 kdpB 423368000947 kdpB Salmonella enterica subsp. enterica serovar Newport str. SL254 potassium-transporting ATPase subunit B YP_002039944.1 774899 R 423368 CDS YP_002039945.1 194443067 complement(776968..778647) 1 NC_011080.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 778647 kdpA 423368000948 kdpA Salmonella enterica subsp. enterica serovar Newport str. SL254 potassium-transporting ATPase subunit A YP_002039945.1 776968 R 423368 CDS YP_002039946.1 194443873 779073..779279 1 NC_011080.1 hypothetical protein 779279 423368000949 SNSL254_A0768 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039946.1 779073 D 423368 CDS YP_002039947.1 194444359 779390..780811 1 NC_011080.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 780811 423368000950 SNSL254_A0769 Salmonella enterica subsp. enterica serovar Newport str. SL254 deoxyribodipyrimidine photolyase YP_002039947.1 779390 D 423368 CDS YP_002039948.1 194446678 complement(780850..782331) 1 NC_011080.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH 782331 423368000951 SNSL254_A0770 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transporter YbgH YP_002039948.1 780850 R 423368 CDS YP_002039949.1 194445149 782660..783403 1 NC_011080.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hydrolase-oxidase 783403 423368000952 SNSL254_A0771 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrolase-oxidase YP_002039949.1 782660 D 423368 CDS YP_002039950.1 194445663 783419..784075 1 NC_011080.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 784075 423368000953 SNSL254_A0772 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039950.1 783419 D 423368 CDS YP_002039951.1 194446443 784069..785001 1 NC_011080.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 785001 423368000954 SNSL254_A0773 Salmonella enterica subsp. enterica serovar Newport str. SL254 allophanate hydrolase subunit 2 YP_002039951.1 784069 D 423368 CDS YP_002039952.1 194444673 784991..785725 1 NC_011080.1 identified by match to protein family HMM PF03746; LamB/YcsF family protein 785725 423368000955 SNSL254_A0774 Salmonella enterica subsp. enterica serovar Newport str. SL254 LamB/YcsF family protein YP_002039952.1 784991 D 423368 CDS YP_002039953.1 194446516 786049..786189 1 NC_011080.1 hypothetical protein 786189 423368000956 SNSL254_A0775 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039953.1 786049 D 423368 CDS YP_002039954.1 194446017 786239..786805 1 NC_011080.1 identified by match to protein family HMM PF00589; hypothetical protein 786805 423368000957 SNSL254_A0776 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039954.1 786239 D 423368 CDS YP_002039955.1 194442563 787454..787600 1 NC_011080.1 hypothetical protein 787600 423368000958 SNSL254_A0777 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039955.1 787454 D 423368 CDS YP_002039956.1 194444197 787644..788342 1 NC_011080.1 hypothetical protein 788342 423368000959 SNSL254_A0778 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039956.1 787644 D 423368 CDS YP_002039957.1 194443539 788628..789779 1 NC_011080.1 identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031; UDP-galactopyranose mutase 789779 glf 423368000960 glf Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-galactopyranose mutase YP_002039957.1 788628 D 423368 CDS YP_002039958.1 194445175 789779..790672 1 NC_011080.1 identified by match to protein family HMM PF00535; glycosyl transferase 790672 423368000961 SNSL254_A0780 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl transferase YP_002039958.1 789779 D 423368 CDS YP_002039959.1 194446387 790685..791818 1 NC_011080.1 identified by match to protein family HMM PF00534; galactosyltransferase 791818 423368000962 SNSL254_A0781 Salmonella enterica subsp. enterica serovar Newport str. SL254 galactosyltransferase YP_002039959.1 790685 D 423368 CDS YP_002039960.1 194445723 791947..792717 1 NC_011080.1 identified by match to protein family HMM PF01061; O-antigen export system permease protein 792717 423368000963 SNSL254_A0782 Salmonella enterica subsp. enterica serovar Newport str. SL254 O-antigen export system permease protein YP_002039960.1 791947 D 423368 CDS YP_002039961.1 194446214 792721..793431 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter domain-containing protein 793431 423368000964 SNSL254_A0783 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter domain-containing protein YP_002039961.1 792721 D 423368 CDS YP_002039962.1 194444123 793525..795303 1 NC_011080.1 glycosyltransferase, cell wall biogenesis 795303 423368000965 SNSL254_A0784 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyltransferase, cell wall biogenesis YP_002039962.1 793525 D 423368 CDS YP_002039963.1 194443611 795553..796329 1 NC_011080.1 hypothetical protein 796329 423368000966 SNSL254_A0785 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039963.1 795553 D 423368 CDS YP_002039964.1 194443619 796333..798282 1 NC_011080.1 glycosyl transferase 798282 423368000967 SNSL254_A0786 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl transferase YP_002039964.1 796333 D 423368 CDS YP_002039965.1 194442569 798350..798487 1 NC_011080.1 hypothetical protein 798487 423368000968 SNSL254_A0787 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039965.1 798350 D 423368 CDS YP_002039966.1 194446665 798536..799327 1 NC_011080.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 799327 423368000969 SNSL254_A0788 Salmonella enterica subsp. enterica serovar Newport str. SL254 endonuclease VIII YP_002039966.1 798536 D 423368 CDS YP_002039967.1 194445700 complement(799382..800428) 1 NC_011080.1 identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082; ammonia monooxygenase 800428 423368000970 SNSL254_A0789 Salmonella enterica subsp. enterica serovar Newport str. SL254 ammonia monooxygenase YP_002039967.1 799382 R 423368 CDS YP_002039968.1 194445649 complement(800565..801848) 1 NC_011080.1 'type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH'; type II citrate synthase 801848 gltA 423368000971 gltA Salmonella enterica subsp. enterica serovar Newport str. SL254 type II citrate synthase YP_002039968.1 800565 R 423368 CDS YP_002039969.1 194444043 802588..802992 1 NC_011080.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase cytochrome b556 large membrane subunit 802992 sdhC 423368000972 sdhC Salmonella enterica subsp. enterica serovar Newport str. SL254 succinate dehydrogenase cytochrome b556 large membrane subunit YP_002039969.1 802588 D 423368 CDS YP_002039970.1 194443367 802986..803333 1 NC_011080.1 identified by match to protein family HMM TIGR02968; succinate dehydrogenase cytochrome b556 small membrane subunit 803333 sdhD 423368000973 sdhD Salmonella enterica subsp. enterica serovar Newport str. SL254 succinate dehydrogenase cytochrome b556 small membrane subunit YP_002039970.1 802986 D 423368 CDS YP_002039971.1 194443628 803333..805099 1 NC_011080.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 805099 sdhA 423368000974 sdhA Salmonella enterica subsp. enterica serovar Newport str. SL254 succinate dehydrogenase flavoprotein subunit YP_002039971.1 803333 D 423368 CDS YP_002039972.1 194443626 805113..805832 1 NC_011080.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 805832 sdhB 423368000975 sdhB Salmonella enterica subsp. enterica serovar Newport str. SL254 succinate dehydrogenase iron-sulfur subunit YP_002039972.1 805113 D 423368 CDS YP_002039973.1 194444060 806356..809157 1 NC_011080.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 809157 sucA 423368000976 sucA Salmonella enterica subsp. enterica serovar Newport str. SL254 2-oxoglutarate dehydrogenase E1 YP_002039973.1 806356 D 423368 CDS YP_002039974.1 194444650 809172..810380 1 NC_011080.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 810380 sucB 423368000977 sucB Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydrolipoamide succinyltransferase YP_002039974.1 809172 D 423368 CDS YP_002039975.1 194445717 810522..811688 1 NC_011080.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 811688 sucC 423368000978 sucC Salmonella enterica subsp. enterica serovar Newport str. SL254 succinyl-CoA synthetase subunit beta YP_002039975.1 810522 D 423368 CDS YP_002039976.1 194446366 811688..812557 1 NC_011080.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 812557 423368000979 SNSL254_A0798 Salmonella enterica subsp. enterica serovar Newport str. SL254 succinyl-CoA synthetase subunit alpha YP_002039976.1 811688 D 423368 CDS YP_002039977.1 194442265 812586..812711 1 NC_011080.1 identified by glimmer; hypothetical protein 812711 423368000980 SNSL254_A0799 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039977.1 812586 D 423368 CDS YP_002039978.1 194442741 812798..812923 1 NC_011080.1 identified by glimmer; hypothetical protein 812923 423368000981 SNSL254_A0800 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039978.1 812798 D 423368 CDS YP_002039979.1 194443486 813545..813670 1 NC_011080.1 identified by glimmer; hypothetical protein 813670 423368000982 SNSL254_A0801 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039979.1 813545 D 423368 CDS YP_002039981.1 194444913 814140..815708 1 NC_011080.1 identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 815708 cydA 423368000983 cydA Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome d ubiquinol oxidase subunit I YP_002039981.1 814140 D 423368 CDS YP_002039982.1 194443845 815724..816863 1 NC_011080.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 816863 cydB1 423368000984 cydB1 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome d ubiquinol oxidase subunit II YP_002039982.1 815724 D 423368 CDS YP_002039983.1 194444135 816878..816991 1 NC_011080.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106; cyd operon protein YbgT 816991 423368000985 SNSL254_A0805 Salmonella enterica subsp. enterica serovar Newport str. SL254 cyd operon protein YbgT YP_002039983.1 816878 D 423368 CDS YP_002039984.1 194442242 816991..817284 1 NC_011080.1 identified by match to protein family HMM PF09600; match to protein family HMM TIGR02112; hypothetical protein 817284 423368000986 SNSL254_A0806 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002039984.1 816991 D 423368 CDS YP_002039985.1 194446009 817513..817917 1 NC_011080.1 catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase 817917 423368000987 SNSL254_A0807 Salmonella enterica subsp. enterica serovar Newport str. SL254 acyl-CoA thioester hydrolase YP_002039985.1 817513 D 423368 CDS YP_002039986.1 194446660 817914..818606 1 NC_011080.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 818606 tolQ 423368000988 tolQ Salmonella enterica subsp. enterica serovar Newport str. SL254 colicin uptake protein TolQ YP_002039986.1 817914 D 423368 CDS YP_002039987.1 194444970 818610..819038 1 NC_011080.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 819038 tolR 423368000989 tolR Salmonella enterica subsp. enterica serovar Newport str. SL254 colicin uptake protein TolR YP_002039987.1 818610 D 423368 CDS YP_002039988.1 194445627 819103..820281 1 NC_011080.1 'inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins'; cell envelope integrity inner membrane protein TolA 820281 tolA 423368000990 tolA Salmonella enterica subsp. enterica serovar Newport str. SL254 cell envelope integrity inner membrane protein TolA YP_002039988.1 819103 D 423368 CDS YP_002039989.1 194443806 820402..821697 1 NC_011080.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 821697 tolB 423368000991 tolB Salmonella enterica subsp. enterica serovar Newport str. SL254 translocation protein TolB YP_002039989.1 820402 D 423368 CDS YP_002039990.1 194444000 821732..822256 1 NC_011080.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; peptidoglycan-associated outer membrane lipoprotein 822256 pal 423368000992 pal Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidoglycan-associated outer membrane lipoprotein YP_002039990.1 821732 D 423368 CDS YP_002039991.1 194442204 822266..823054 1 NC_011080.1 periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 823054 423368000993 SNSL254_A0813 Salmonella enterica subsp. enterica serovar Newport str. SL254 tol-pal system protein YbgF YP_002039991.1 822266 D 423368 CDS YP_002039992.1 194443249 824586..825629 1 NC_011080.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 825629 nadA 423368001000 nadA Salmonella enterica subsp. enterica serovar Newport str. SL254 quinolinate synthetase YP_002039992.1 824586 D 423368 CDS YP_002039993.1 194444223 825654..826373 1 NC_011080.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; PnuC protein 826373 423368001001 SNSL254_A0821 Salmonella enterica subsp. enterica serovar Newport str. SL254 PnuC protein YP_002039993.1 825654 D 423368 CDS YP_002039994.1 194445075 complement(826370..827308) 1 NC_011080.1 involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB 827308 423368001002 SNSL254_A0822 Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc transporter ZitB YP_002039994.1 826370 R 423368 CDS YP_002039995.1 194445246 complement(827419..827805) 1 NC_011080.1 homeobox protein 827805 423368001003 SNSL254_A0823 Salmonella enterica subsp. enterica serovar Newport str. SL254 homeobox protein YP_002039995.1 827419 R 423368 CDS YP_002039996.1 194445906 828125..829177 1 NC_011080.1 'catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive'; phospho-2-dehydro-3-deoxyheptonate aldolase 829177 aroG 423368001004 aroG Salmonella enterica subsp. enterica serovar Newport str. SL254 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002039996.1 828125 D 423368 CDS YP_002039997.1 194444238 complement(829271..829816) 1 NC_011080.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; fumarate hydratase I subunit beta 829816 423368001005 SNSL254_A0825 Salmonella enterica subsp. enterica serovar Newport str. SL254 fumarate hydratase I subunit beta YP_002039997.1 829271 R 423368 CDS YP_002039998.1 194444864 complement(829831..830676) 1 NC_011080.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 830676 423368001006 SNSL254_A0826 Salmonella enterica subsp. enterica serovar Newport str. SL254 fumarate hydratase YP_002039998.1 829831 R 423368 CDS YP_002039999.1 194443546 830806..831696 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 831696 423368001007 SNSL254_A0827 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002039999.1 830806 D 423368 CDS YP_002040000.1 194444122 complement(831697..832623) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 832623 423368001008 SNSL254_A0828 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002040000.1 831697 R 423368 CDS YP_002040001.1 194442349 832903..834171 1 NC_011080.1 identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM PF06808; anion transporter 834171 423368001009 SNSL254_A0829 Salmonella enterica subsp. enterica serovar Newport str. SL254 anion transporter YP_002040001.1 832903 D 423368 CDS YP_002040002.1 194445062 834260..834466 1 NC_011080.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 834466 423368001010 SNSL254_A0830 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxaloacetate decarboxylase subunit gamma YP_002040002.1 834260 D 423368 CDS YP_002040003.1 194443228 834482..836257 1 NC_011080.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 836257 oadA 423368001011 oadA Salmonella enterica subsp. enterica serovar Newport str. SL254 oxaloacetate decarboxylase YP_002040003.1 834482 D 423368 CDS YP_002040004.1 194446069 836270..837571 1 NC_011080.1 identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta 837571 423368001012 SNSL254_A0832 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxaloacetate decarboxylase subunit beta YP_002040004.1 836270 D 423368 CDS YP_002040005.1 194445207 837690..838388 1 NC_011080.1 hypothetical protein 838388 423368001013 SNSL254_A0833 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040005.1 837690 D 423368 CDS YP_002040006.1 194443543 838768..839847 1 NC_011080.1 identified by match to protein family HMM PF01032; ABC transporter permease 839847 423368001014 SNSL254_A0834 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002040006.1 838768 D 423368 CDS YP_002040007.1 194446520 839847..840623 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 840623 423368001015 SNSL254_A0835 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002040007.1 839847 D 423368 CDS YP_002040008.1 194445433 complement(840714..841466) 1 NC_011080.1 '2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate'; phosphoglyceromutase 841466 gpmA 423368001016 gpmA Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglyceromutase YP_002040008.1 840714 R 423368 CDS YP_002040009.1 194446021 complement(841690..842730) 1 NC_011080.1 'catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose'; aldose 1-epimerase 842730 galM 423368001017 galM Salmonella enterica subsp. enterica serovar Newport str. SL254 aldose 1-epimerase YP_002040009.1 841690 R 423368 CDS YP_002040010.1 194446739 complement(842724..843872) 1 NC_011080.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 843872 galK 423368001018 galK Salmonella enterica subsp. enterica serovar Newport str. SL254 galactokinase YP_002040010.1 842724 R 423368 CDS YP_002040011.1 194442321 complement(843875..844921) 1 NC_011080.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 844921 galT 423368001019 galT Salmonella enterica subsp. enterica serovar Newport str. SL254 galactose-1-phosphate uridylyltransferase YP_002040011.1 843875 R 423368 CDS YP_002040012.1 194445130 complement(844932..845948) 1 NC_011080.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-galactose-4-epimerase 845948 galE 423368001020 galE Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-galactose-4-epimerase YP_002040012.1 844932 R 423368 CDS YP_002040013.1 194444759 complement(846171..847079) 1 NC_011080.1 hypothetical protein 847079 423368001021 SNSL254_A0841 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040013.1 846171 R 423368 CDS YP_002040014.1 194445949 complement(847250..848725) 1 NC_011080.1 contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum transport ATP-binding protein ModF 848725 423368001022 SNSL254_A0842 Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdenum transport ATP-binding protein ModF YP_002040014.1 847250 R 423368 CDS YP_002040015.1 194442837 complement(848793..849581) 1 NC_011080.1 represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE 849581 423368001023 SNSL254_A0843 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator ModE YP_002040015.1 848793 R 423368 CDS YP_002040016.1 194442344 849710..849859 1 NC_011080.1 hypothetical protein 849859 423368001024 SNSL254_A0844 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040016.1 849710 D 423368 CDS YP_002040017.1 194444387 850026..850799 1 NC_011080.1 with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 850799 modA 423368001025 modA Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdate transporter periplasmic protein YP_002040017.1 850026 D 423368 CDS YP_002040018.1 194445584 850799..851488 1 NC_011080.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 851488 modB 423368001026 modB Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdate ABC transporter permease YP_002040018.1 850799 D 423368 CDS YP_002040019.1 194445080 851491..852549 1 NC_011080.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 852549 modC 423368001027 modC Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdate transporter ATP-binding protein YP_002040019.1 851491 D 423368 CDS YP_002040020.1 194446604 complement(852550..853410) 1 NC_011080.1 'YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily'; phosphotransferase 853410 423368001028 SNSL254_A0848 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphotransferase YP_002040020.1 852550 R 423368 CDS YP_002040021.1 194446085 853532..854527 1 NC_011080.1 catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 854527 423368001029 SNSL254_A0849 Salmonella enterica subsp. enterica serovar Newport str. SL254 6-phosphogluconolactonase YP_002040021.1 853532 D 423368 CDS YP_002040022.1 194442976 complement(854671..855954) 1 NC_011080.1 outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase 855954 423368001030 SNSL254_A0850 Salmonella enterica subsp. enterica serovar Newport str. SL254 pectinesterase YP_002040022.1 854671 R 423368 CDS YP_002040023.1 194445732 856153..857415 1 NC_011080.1 'catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway'; imidazolonepropionase 857415 hutI 423368001031 hutI Salmonella enterica subsp. enterica serovar Newport str. SL254 imidazolonepropionase YP_002040023.1 856153 D 423368 CDS YP_002040024.1 194444635 857412..858353 1 NC_011080.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 858353 hutG 423368001032 hutG Salmonella enterica subsp. enterica serovar Newport str. SL254 formimidoylglutamase YP_002040024.1 857412 D 423368 CDS YP_002040025.1 194445134 858398..859123 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018; histidine utilization repressor 859123 hutC 423368001033 hutC Salmonella enterica subsp. enterica serovar Newport str. SL254 histidine utilization repressor YP_002040025.1 858398 D 423368 CDS YP_002040026.1 194445492 859320..861005 1 NC_011080.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 861005 hutU 423368001034 hutU Salmonella enterica subsp. enterica serovar Newport str. SL254 urocanate hydratase YP_002040026.1 859320 D 423368 CDS YP_002040027.1 194443847 861007..862527 1 NC_011080.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 862527 hutH 423368001035 hutH Salmonella enterica subsp. enterica serovar Newport str. SL254 histidine ammonia-lyase YP_002040027.1 861007 D 423368 CDS YP_002040028.1 194442547 complement(862612..863088) 1 NC_011080.1 YbhB; similar to rat and human kinase inhibitory proteins; kinase inhibitor protein 863088 423368001036 SNSL254_A0856 Salmonella enterica subsp. enterica serovar Newport str. SL254 kinase inhibitor protein YP_002040028.1 862612 R 423368 CDS YP_002040029.1 194443157 complement(863146..864435) 1 NC_011080.1 'catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate'; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 864435 bioA 423368001037 bioA Salmonella enterica subsp. enterica serovar Newport str. SL254 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_002040029.1 863146 R 423368 CDS YP_002040030.1 194445747 864522..865562 1 NC_011080.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 865562 bioB 423368001038 bioB Salmonella enterica subsp. enterica serovar Newport str. SL254 biotin synthase YP_002040030.1 864522 D 423368 CDS YP_002040031.1 194446519 865559..866716 1 NC_011080.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 866716 bioF 423368001039 bioF Salmonella enterica subsp. enterica serovar Newport str. SL254 8-amino-7-oxononanoate synthase YP_002040031.1 865559 D 423368 CDS YP_002040032.1 194443253 866700..867455 1 NC_011080.1 'methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth'; biotin biosynthesis protein BioC 867455 bioC 423368001040 bioC Salmonella enterica subsp. enterica serovar Newport str. SL254 biotin biosynthesis protein BioC YP_002040032.1 866700 D 423368 CDS YP_002040033.1 194443425 867442..868134 1 NC_011080.1 'DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium'; dithiobiotin synthetase 868134 bioD 423368001041 bioD Salmonella enterica subsp. enterica serovar Newport str. SL254 dithiobiotin synthetase YP_002040033.1 867442 D 423368 CDS YP_002040034.1 194445085 868785..870806 1 NC_011080.1 'The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion'; excinuclease ABC subunit B 870806 uvrB 423368001042 uvrB Salmonella enterica subsp. enterica serovar Newport str. SL254 excinuclease ABC subunit B YP_002040034.1 868785 D 423368 CDS YP_002040035.1 194445572 871296..873563 1 NC_011080.1 leucine-rich repeat protein 873563 423368001043 SNSL254_A0863 Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine-rich repeat protein YP_002040035.1 871296 D 423368 CDS YP_002040036.1 194446210 complement(873655..874563) 1 NC_011080.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 874563 423368001044 SNSL254_A0864 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040036.1 873655 R 423368 CDS YP_002040037.1 194446581 874960..875949 1 NC_011080.1 'together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z'; molybdenum cofactor biosynthesis protein A 875949 moaA 423368001045 moaA Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdenum cofactor biosynthesis protein A YP_002040037.1 874960 D 423368 CDS YP_002040038.1 194442288 875971..876483 1 NC_011080.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B 876483 moaB 423368001046 moaB Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdenum cofactor biosynthesis protein B YP_002040038.1 875971 D 423368 CDS YP_002040039.1 194443192 876486..876971 1 NC_011080.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 876971 moaC 423368001047 moaC Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdenum cofactor biosynthesis protein MoaC YP_002040039.1 876486 D 423368 CDS YP_002040040.1 194443532 876964..877209 1 NC_011080.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 877209 moaD 423368001048 moaD Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdopterin synthase small subunit YP_002040040.1 876964 D 423368 CDS YP_002040041.1 194444195 877211..877663 1 NC_011080.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 877663 moaE 423368001049 moaE Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_002040041.1 877211 D 423368 CDS YP_002040042.1 194444921 877711..878415 1 NC_011080.1 identified by match to protein family HMM PF01027; hypothetical protein 878415 423368001050 SNSL254_A0870 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040042.1 877711 D 423368 CDS YP_002040043.1 194445846 878561..879268 1 NC_011080.1 integral membrane protein 879268 423368001051 SNSL254_A0871 Salmonella enterica subsp. enterica serovar Newport str. SL254 integral membrane protein YP_002040043.1 878561 D 423368 CDS YP_002040044.1 194446099 879298..879900 1 NC_011080.1 hypothetical protein 879900 423368001052 SNSL254_A0872 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040044.1 879298 D 423368 CDS YP_002040045.1 194443267 879908..880468 1 NC_011080.1 hypothetical protein 880468 423368001053 SNSL254_A0873 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040045.1 879908 D 423368 CDS YP_002040046.1 194442238 complement(880471..881433) 1 NC_011080.1 hypothetical protein 881433 423368001054 SNSL254_A0874 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040046.1 880471 R 423368 CDS YP_002040047.1 194444011 complement(881433..882674) 1 NC_011080.1 identified by match to protein family HMM PF00614; cardiolipin synthase 2 882674 423368001055 SNSL254_A0875 Salmonella enterica subsp. enterica serovar Newport str. SL254 cardiolipin synthase 2 YP_002040047.1 881433 R 423368 CDS YP_002040048.1 194443379 complement(882671..883429) 1 NC_011080.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 883429 423368001056 SNSL254_A0876 Salmonella enterica subsp. enterica serovar Newport str. SL254 endonuclease/exonuclease/phosphatase family protein YP_002040048.1 882671 R 423368 CDS YP_002040049.1 194445449 883562..883972 1 NC_011080.1 hypothetical protein 883972 423368001057 SNSL254_A0877 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040049.1 883562 D 423368 CDS YP_002040050.1 194445354 complement(883934..885040) 1 NC_011080.1 identified by match to protein family HMM PF01061; ABC transporter permease 885040 423368001058 SNSL254_A0878 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002040050.1 883934 R 423368 CDS YP_002040051.1 194444906 complement(885156..886286) 1 NC_011080.1 identified by match to protein family HMM PF01061; inner membrane transport permease YbhS 886286 423368001059 SNSL254_A0879 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport permease YbhS YP_002040051.1 885156 R 423368 CDS YP_002040052.1 194444576 complement(886279..888015) 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 888015 423368001060 SNSL254_A0880 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002040052.1 886279 R 423368 CDS YP_002040053.1 194445005 complement(888008..889003) 1 NC_011080.1 identified by match to protein family HMM PF00529; hypothetical protein 889003 423368001061 SNSL254_A0881 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040053.1 888008 R 423368 CDS YP_002040054.1 194446337 complement(889003..889677) 1 NC_011080.1 identified by match to protein family HMM PF00440; match to protein family HMM PF09209; DNA-binding transcriptional regulator 889677 423368001062 SNSL254_A0882 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator YP_002040054.1 889003 R 423368 CDS YP_002040055.1 194442237 889907..891268 1 NC_011080.1 this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 891268 423368001063 SNSL254_A0883 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent RNA helicase RhlE YP_002040055.1 889907 D 423368 CDS YP_002040056.1 194445323 891476..893620 1 NC_011080.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 893620 dinG 423368001064 dinG Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent DNA helicase DinG YP_002040056.1 891476 D 423368 CDS YP_002040057.1 194445812 893650..894624 1 NC_011080.1 identified by match to protein family HMM PF02885; glycosyl transferase 894624 423368001065 SNSL254_A0885 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl transferase YP_002040057.1 893650 D 423368 CDS YP_002040058.1 194444503 complement(894780..895040) 1 NC_011080.1 identified by match to protein family HMM PF07338; hypothetical protein 895040 423368001066 SNSL254_A0887 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040058.1 894780 R 423368 CDS YP_002040061.1 194443834 complement(895325..895591) 1 NC_011080.1 identified by match to protein family HMM PF01258; hypothetical protein 895591 423368001067 SNSL254_A0889 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040061.1 895325 R 423368 CDS YP_002040062.1 194442902 895796..896722 1 NC_011080.1 identified by match to protein family HMM PF05971; SAM-dependent methyltransferase 896722 423368001068 SNSL254_A0890 Salmonella enterica subsp. enterica serovar Newport str. SL254 SAM-dependent methyltransferase YP_002040062.1 895796 D 423368 CDS YP_002040063.1 194443832 complement(896719..898941) 1 NC_011080.1 identified by match to protein family HMM PF00924; hypothetical protein 898941 423368001069 SNSL254_A0891 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040063.1 896719 R 423368 CDS YP_002040064.1 194446015 complement(899060..899782) 1 NC_011080.1 similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 899782 glnQ 423368001070 glnQ Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamine ABC transporter ATP-binding protein YP_002040064.1 899060 R 423368 CDS YP_002040065.1 194445368 complement(899779..900438) 1 NC_011080.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease 900438 glnP 423368001071 glnP Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamine ABC transporter permease YP_002040065.1 899779 R 423368 CDS YP_002040066.1 194442423 complement(900584..901330) 1 NC_011080.1 similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter substrate-binding protein 901330 glnH 423368001072 glnH Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamine ABC transporter substrate-binding protein YP_002040066.1 900584 R 423368 CDS YP_002040067.1 194446367 complement(901327..901449) 1 NC_011080.1 identified by glimmer; hypothetical protein 901449 423368001073 SNSL254_A0895 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040067.1 901327 R 423368 CDS YP_002040068.1 194443334 complement(901807..902310) 1 NC_011080.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 902310 423368001074 SNSL254_A0896 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA starvation/stationary phase protection protein Dps YP_002040068.1 901807 R 423368 CDS YP_002040069.1 194442761 complement(902426..902584) 1 NC_011080.1 hypothetical protein 902584 423368001075 SNSL254_A0897 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040069.1 902426 R 423368 CDS YP_002040070.1 194444252 complement(902613..903500) 1 NC_011080.1 identified by match to protein family HMM PF00892; threonine and homoserine efflux system 903500 423368001076 SNSL254_A0898 Salmonella enterica subsp. enterica serovar Newport str. SL254 threonine and homoserine efflux system YP_002040070.1 902613 R 423368 CDS YP_002040071.1 194443706 903854..904369 1 NC_011080.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 904369 ompX 423368001077 ompX Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein X YP_002040071.1 903854 D 423368 CDS YP_002040072.1 194445944 complement(904432..906012) 1 NC_011080.1 identified by match to protein family HMM PF00884; hypothetical protein 906012 423368001078 SNSL254_A0900 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040072.1 904432 R 423368 CDS YP_002040073.1 194442821 906013..906141 1 NC_011080.1 identified by glimmer; hypothetical protein 906141 423368001079 SNSL254_A0901 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040073.1 906013 D 423368 CDS YP_002040074.1 194445349 906591..907064 1 NC_011080.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 907064 423368001080 SNSL254_A0903 Salmonella enterica subsp. enterica serovar Newport str. SL254 manganese transport regulator MntR YP_002040074.1 906591 D 423368 CDS YP_002040075.1 194442696 907061..908173 1 NC_011080.1 identified by match to protein family HMM PF03600; citrate transporter family protein 908173 423368001081 SNSL254_A0904 Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate transporter family protein YP_002040075.1 907061 D 423368 CDS YP_002040076.1 194444059 complement(908217..909137) 1 NC_011080.1 identified by match to protein family HMM PF03734; hypothetical protein 909137 423368001082 SNSL254_A0905 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040076.1 908217 R 423368 CDS YP_002040077.1 194446008 909356..910948 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 910948 423368001083 SNSL254_A0906 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002040077.1 909356 D 423368 CDS YP_002040078.1 194443318 911404..912300 1 NC_011080.1 hypothetical protein 912300 423368001084 SNSL254_A0907 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040078.1 911404 D 423368 CDS YP_002040079.1 194444785 complement(912329..912859) 1 NC_011080.1 identified by match to protein family HMM PF08282; sugar phosphatase SupH 912859 423368001085 SNSL254_A0908 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar phosphatase SupH YP_002040079.1 912329 R 423368 CDS YP_002040080.1 194446656 complement(913253..914518) 1 NC_011080.1 identified by match to protein family HMM PF07350; hypothetical protein 914518 423368001086 SNSL254_A0909 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040080.1 913253 R 423368 CDS YP_002040081.1 194442260 914780..915589 1 NC_011080.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; sugar phosphatase SupH 915589 423368001087 SNSL254_A0910 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar phosphatase SupH YP_002040081.1 914780 D 423368 CDS YP_002040082.1 194443020 complement(915667..918099) 1 NC_011080.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; formate C-acetyltransferase 3 918099 423368001088 SNSL254_A0911 Salmonella enterica subsp. enterica serovar Newport str. SL254 formate C-acetyltransferase 3 YP_002040082.1 915667 R 423368 CDS YP_002040083.1 194445661 complement(918105..919004) 1 NC_011080.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating protein family 919004 423368001089 SNSL254_A0912 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycyl-radical enzyme activating protein family YP_002040083.1 918105 R 423368 CDS YP_002040084.1 194446486 complement(919282..920031) 1 NC_011080.1 'ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase'; molybdopterin biosynthesis protein MoeB 920031 moeB 423368001090 moeB Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdopterin biosynthesis protein MoeB YP_002040084.1 919282 R 423368 CDS YP_002040085.1 194445569 complement(920031..921266) 1 NC_011080.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA 921266 423368001091 SNSL254_A0914 Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdopterin biosynthesis protein MoeA YP_002040085.1 920031 R 423368 CDS YP_002040086.1 194445187 921470..922411 1 NC_011080.1 identified by match to protein family HMM PF01112; L-asparaginase 922411 423368001092 SNSL254_A0915 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-asparaginase YP_002040086.1 921470 D 423368 CDS YP_002040087.1 194443629 922422..924293 1 NC_011080.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 924293 423368001093 SNSL254_A0916 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione transporter ATP-binding protein YP_002040087.1 922422 D 423368 CDS YP_002040088.1 194444439 924326..925864 1 NC_011080.1 identified by match to protein family HMM PF00496; glutathione-binding protein GsiB 925864 423368001094 SNSL254_A0917 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione-binding protein GsiB YP_002040088.1 924326 D 423368 CDS YP_002040089.1 194442378 925925..926845 1 NC_011080.1 identified by match to protein family HMM PF00528; ABC transporter permease 926845 423368001095 SNSL254_A0918 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002040089.1 925925 D 423368 CDS YP_002040090.1 194443175 926848..927759 1 NC_011080.1 identified by match to protein family HMM PF00528; glutathione transport system permease GsiD 927759 423368001096 SNSL254_A0919 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione transport system permease GsiD YP_002040090.1 926848 D 423368 CDS YP_002040091.1 194445570 complement(927850..929175) 1 NC_011080.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 929175 rimO 423368001097 rimO Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S12 methylthiotransferase YP_002040091.1 927850 R 423368 CDS YP_002040092.1 194445778 929202..929336 1 NC_011080.1 identified by glimmer; hypothetical protein 929336 423368001098 SNSL254_A0921 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040092.1 929202 D 423368 CDS YP_002040093.1 194443333 929406..929789 1 NC_011080.1 'BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing'; biofilm formation regulatory protein BssR 929789 bssR 423368001099 bssR Salmonella enterica subsp. enterica serovar Newport str. SL254 biofilm formation regulatory protein BssR YP_002040093.1 929406 D 423368 CDS YP_002040094.1 194444151 930240..930404 1 NC_011080.1 identified by glimmer; hypothetical protein 930404 423368001100 SNSL254_A0923 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040094.1 930240 D 423368 CDS YP_002040095.1 194442373 930503..931018 1 NC_011080.1 citrate lyase 931018 423368001101 SNSL254_A0924 Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate lyase YP_002040095.1 930503 D 423368 CDS YP_002040096.1 194443754 931041..931790 1 NC_011080.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 931790 423368001102 SNSL254_A0925 Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transfer flavoprotein subunit beta YP_002040096.1 931041 D 423368 CDS YP_002040097.1 194445985 931801..932748 1 NC_011080.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 932748 423368001103 SNSL254_A0926 Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transfer flavoprotein subunit alpha YP_002040097.1 931801 D 423368 CDS YP_002040098.1 194444953 933042..934205 1 NC_011080.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 934205 423368001104 SNSL254_A0928 Salmonella enterica subsp. enterica serovar Newport str. SL254 acyl-CoA dehydrogenase YP_002040098.1 933042 D 423368 CDS YP_002040099.1 194445148 934654..936339 1 NC_011080.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05187; electron transfer flavoprotein-ubiquinone oxidoreductase 936339 423368001105 SNSL254_A0929 Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transfer flavoprotein-ubiquinone oxidoreductase YP_002040099.1 934654 D 423368 CDS YP_002040100.1 194445098 complement(936345..937235) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 937235 423368001106 SNSL254_A0930 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002040100.1 936345 R 423368 CDS YP_002040101.1 194445587 complement(937500..937925) 1 NC_011080.1 citrate transporter family protein 937925 423368001107 SNSL254_A0931 Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate transporter family protein YP_002040101.1 937500 R 423368 CDS YP_002040102.1 194442521 complement(938960..939586) 1 NC_011080.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase family protein 939586 423368001109 SNSL254_A0934 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione S-transferase family protein YP_002040102.1 938960 R 423368 CDS YP_002040103.1 194445951 939830..941032 1 NC_011080.1 'penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 941032 423368001110 SNSL254_A0935 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-alanyl-D-alanine carboxypeptidase YP_002040103.1 939830 D 423368 CDS YP_002040104.1 194444762 complement(941078..941836) 1 NC_011080.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DNA-binding transcriptional repressor DeoR 941836 423368001111 SNSL254_A0936 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional repressor DeoR YP_002040104.1 941078 R 423368 CDS YP_002040105.1 194446280 complement(941908..942582) 1 NC_011080.1 identified by match to protein family HMM PF01569; undecaprenyl pyrophosphate phosphatase 942582 423368001112 SNSL254_A0937 Salmonella enterica subsp. enterica serovar Newport str. SL254 undecaprenyl pyrophosphate phosphatase YP_002040105.1 941908 R 423368 CDS YP_002040106.1 194443472 942829..944061 1 NC_011080.1 identified by match to protein family HMM PF07690; multidrug resistance protein MdtM 944061 423368001113 SNSL254_A0938 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug resistance protein MdtM YP_002040106.1 942829 D 423368 CDS YP_002040107.1 194443778 complement(944115..944930) 1 NC_011080.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; phosphatase YbjI 944930 423368001114 SNSL254_A0939 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphatase YbjI YP_002040107.1 944115 R 423368 CDS YP_002040108.1 194443309 complement(944927..946138) 1 NC_011080.1 identified by match to protein family HMM PF07690; hypothetical protein 946138 423368001115 SNSL254_A0940 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040108.1 944927 R 423368 CDS YP_002040109.1 194445724 946306..946926 1 NC_011080.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 946926 423368001116 SNSL254_A0941 Salmonella enterica subsp. enterica serovar Newport str. SL254 TetR family transcriptional regulator YP_002040109.1 946306 D 423368 CDS YP_002040110.1 194446381 complement(947043..948728) 1 NC_011080.1 identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein 948728 423368001118 SNSL254_A0943 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040110.1 947043 R 423368 CDS YP_002040111.2 448967509 948999..949376 1 NC_011080.1 hypothetical protein 949376 423368001119 SNSL254_A0944 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040111.2 948999 D 423368 CDS YP_002040112.1 194443691 complement(949408..949671) 1 NC_011080.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 949671 grxA 423368001120 grxA Salmonella enterica subsp. enterica serovar Newport str. SL254 glutaredoxin YP_002040112.1 949408 R 423368 CDS YP_002040113.1 194444341 949841..950131 1 NC_011080.1 YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 950131 423368001121 SNSL254_A0946 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040113.1 949841 D 423368 CDS YP_002040114.1 194442690 950115..950837 1 NC_011080.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 950837 nfsA 423368001122 nfsA Salmonella enterica subsp. enterica serovar Newport str. SL254 nitroreductase A YP_002040114.1 950115 D 423368 CDS YP_002040115.1 194443283 950895..951797 1 NC_011080.1 responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 951797 rimK 423368001123 rimK Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosomal protein S6 modification protein YP_002040115.1 950895 D 423368 CDS YP_002040116.1 194442675 951893..952369 1 NC_011080.1 hypothetical protein 952369 423368001124 SNSL254_A0949 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040116.1 951893 D 423368 CDS YP_002040117.1 194443308 952715..953830 1 NC_011080.1 identified by match to protein family HMM PF01547; putrescine ABC transporter substrate-binding protein 953830 423368001125 SNSL254_A0950 Salmonella enterica subsp. enterica serovar Newport str. SL254 putrescine ABC transporter substrate-binding protein YP_002040117.1 952715 D 423368 CDS YP_002040118.1 194445758 953918..955051 1 NC_011080.1 part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 955051 potG 423368001126 potG Salmonella enterica subsp. enterica serovar Newport str. SL254 putrescine ABC transporter ATP-binding protein YP_002040118.1 953918 D 423368 CDS YP_002040119.1 194446344 955061..956014 1 NC_011080.1 identified by match to protein family HMM PF00528; putrescine ABC transporter permease 956014 potH 423368001127 potH Salmonella enterica subsp. enterica serovar Newport str. SL254 putrescine ABC transporter permease YP_002040119.1 955061 D 423368 CDS YP_002040120.1 194444644 956011..956856 1 NC_011080.1 identified by match to protein family HMM PF00528; putrescine ABC transporter permease 956856 potI 423368001128 potI Salmonella enterica subsp. enterica serovar Newport str. SL254 putrescine ABC transporter permease YP_002040120.1 956011 D 423368 CDS YP_002040121.1 194445360 956840..957403 1 NC_011080.1 hypothetical protein 957403 423368001129 SNSL254_A0954 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040121.1 956840 D 423368 CDS YP_002040122.1 194443652 957446..958576 1 NC_011080.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 958576 rumB 423368001130 rumB Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA methyluridine methyltransferase YP_002040122.1 957446 D 423368 CDS YP_002040123.1 194444296 958859..960202 1 NC_011080.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 960202 423368001131 SNSL254_A0956 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system ascorbate-specific transporter subunit IIC YP_002040123.1 958859 D 423368 CDS YP_008083619.1 513538149 960232..960552 1 NC_011080.1 hypothetical protein 960552 423368001132 SNSL254_A0957 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083619.1 960232 D 423368 CDS YP_002040124.1 194444340 960562..962049 1 NC_011080.1 identified by match to protein family HMM PF00884; sulfatase 962049 423368001133 SNSL254_A0958 Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfatase YP_002040124.1 960562 D 423368 CDS YP_002040125.1 194446347 complement(962267..962998) 1 NC_011080.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein 962998 artJ 423368001134 artJ Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine ABC transporter substrate-binding protein YP_002040125.1 962267 R 423368 CDS YP_002040126.1 194443230 complement(963235..963903) 1 NC_011080.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 963903 artM 423368001135 artM Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine transporter permease subunit ArtM YP_002040126.1 963235 R 423368 CDS YP_002040127.1 194445319 complement(963903..964619) 1 NC_011080.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 964619 artQ 423368001136 artQ Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine transporter permease subunit ArtQ YP_002040127.1 963903 R 423368 CDS YP_002040128.1 194444543 complement(964626..965363) 1 NC_011080.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein 965363 artI 423368001137 artI Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine ABC transporter substrate-binding protein YP_002040128.1 964626 R 423368 CDS YP_002040129.1 194446401 complement(965375..966103) 1 NC_011080.1 With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 966103 artP 423368001138 artP Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine transporter ATP-binding subunit YP_002040129.1 965375 R 423368 CDS YP_002040130.1 194445888 complement(966333..966848) 1 NC_011080.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein 966848 423368001139 SNSL254_A0964 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002040130.1 966333 R 423368 CDS YP_002040131.1 194443277 966976..967299 1 NC_011080.1 identified by match to protein family HMM PF01906; hypothetical protein 967299 423368001140 SNSL254_A0965 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040131.1 966976 D 423368 CDS YP_002040132.1 194444375 967296..968126 1 NC_011080.1 identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase AmiD 968126 423368001141 SNSL254_A0966 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylmuramoyl-L-alanine amidase AmiD YP_002040132.1 967296 D 423368 CDS YP_002040133.1 194442654 complement(968123..969136) 1 NC_011080.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family 969136 423368001142 SNSL254_A0967 Salmonella enterica subsp. enterica serovar Newport str. SL254 NAD dependent epimerase/dehydratase family YP_002040133.1 968123 R 423368 CDS YP_002040134.1 194443874 complement(969232..970665) 1 NC_011080.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; NAD dependent epimerase/dehydratase family protein 970665 423368001143 SNSL254_A0968 Salmonella enterica subsp. enterica serovar Newport str. SL254 NAD dependent epimerase/dehydratase family protein YP_002040134.1 969232 R 423368 CDS YP_002040135.1 194444583 complement(970676..971677) 1 NC_011080.1 'low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine'; L-threonine aldolase 971677 ltaE 423368001144 ltaE Salmonella enterica subsp. enterica serovar Newport str. SL254 L-threonine aldolase YP_002040135.1 970676 R 423368 CDS YP_002040136.1 194444202 complement(971716..973434) 1 NC_011080.1 catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 973434 poxB 423368001145 poxB Salmonella enterica subsp. enterica serovar Newport str. SL254 pyruvate dehydrogenase YP_002040136.1 971716 R 423368 CDS YP_002040137.1 194444370 complement(973592..974563) 1 NC_011080.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; HCP oxidoreductase 974563 hcr 423368001146 hcr Salmonella enterica subsp. enterica serovar Newport str. SL254 HCP oxidoreductase YP_002040137.1 973592 R 423368 CDS YP_002040138.1 194444855 complement(974572..976224) 1 NC_011080.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 976224 hcp 423368001147 hcp Salmonella enterica subsp. enterica serovar Newport str. SL254 hydroxylamine reductase YP_002040138.1 974572 R 423368 CDS YP_002040139.1 194442578 complement(976368..977267) 1 NC_011080.1 identified by match to protein family HMM PF03956; hypothetical protein 977267 423368001148 SNSL254_A0973 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040139.1 976368 R 423368 CDS YP_002040140.1 194446500 977469..979127 1 NC_011080.1 protein nucleotide triphosphate hydrolase domain containing protein 979127 423368001149 SNSL254_A0974 Salmonella enterica subsp. enterica serovar Newport str. SL254 protein nucleotide triphosphate hydrolase domain containing protein YP_002040140.1 977469 D 423368 CDS YP_002040141.1 194443072 complement(979124..980074) 1 NC_011080.1 identified by match to protein family HMM PF04393; VirK-like protein 980074 423368001150 SNSL254_A0975 Salmonella enterica subsp. enterica serovar Newport str. SL254 VirK-like protein YP_002040141.1 979124 R 423368 CDS YP_002040142.1 194442427 980220..981338 1 NC_011080.1 confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 981338 423368001151 SNSL254_A0976 Salmonella enterica subsp. enterica serovar Newport str. SL254 macrolide transporter subunit MacA YP_002040142.1 980220 D 423368 CDS YP_002040143.1 194445699 981335..983281 1 NC_011080.1 with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 983281 423368001152 SNSL254_A0977 Salmonella enterica subsp. enterica serovar Newport str. SL254 macrolide transporter ATP-binding /permease YP_002040143.1 981335 D 423368 CDS YP_002040144.1 194446783 complement(983411..983632) 1 NC_011080.1 identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381; cold shock domain-containing protein CspD 983632 cspD 423368001153 cspD Salmonella enterica subsp. enterica serovar Newport str. SL254 cold shock domain-containing protein CspD YP_002040144.1 983411 R 423368 CDS YP_002040145.1 194444791 983956..984276 1 NC_011080.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 984276 clpS 423368001154 clpS Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent Clp protease adaptor protein ClpS YP_002040145.1 983956 D 423368 CDS YP_002040146.1 194445498 984307..986583 1 NC_011080.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 986583 clpA 423368001155 clpA Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent Clp protease ATP-binding subunit YP_002040146.1 984307 D 423368 CDS YP_002040147.1 194445841 complement(986797..986994) 1 NC_011080.1 hypothetical protein 986994 423368001156 SNSL254_A0981 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040147.1 986797 R 423368 CDS YP_002040148.1 194446512 complement(987156..987533) 1 NC_011080.1 phage integrase 987533 423368001157 SNSL254_A0982 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage integrase YP_002040148.1 987156 R 423368 CDS YP_002040149.1 194444538 complement(988122..988799) 1 NC_011080.1 identified by match to protein family HMM PF00857; hypothetical protein 988799 423368001159 SNSL254_A0984 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040149.1 988122 R 423368 CDS YP_002040150.1 194445208 complement(988819..989679) 1 NC_011080.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin 989679 423368001160 SNSL254_A0985 Salmonella enterica subsp. enterica serovar Newport str. SL254 pirin YP_002040150.1 988819 R 423368 CDS YP_002040151.1 194444071 989788..990699 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 990699 423368001161 SNSL254_A0986 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002040151.1 989788 D 423368 CDS YP_002040152.1 194444853 complement(990790..991008) 1 NC_011080.1 'stimulates the activities of the other two initiation factors, IF-2 and IF-3'; translation initiation factor IF-1 991008 infA 423368001162 infA Salmonella enterica subsp. enterica serovar Newport str. SL254 translation initiation factor IF-1 YP_002040152.1 990790 R 423368 CDS YP_002040153.1 194443321 complement(991320..992024) 1 NC_011080.1 'leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys'; leucyl/phenylalanyl-tRNA--protein transferase 992024 aat 423368001163 aat Salmonella enterica subsp. enterica serovar Newport str. SL254 leucyl/phenylalanyl-tRNA--protein transferase YP_002040153.1 991320 R 423368 CDS YP_002040154.1 194443848 complement(992069..993790) 1 NC_011080.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 993790 423368001164 SNSL254_A0989 Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_002040154.1 992069 R 423368 CDS YP_002040155.1 194442502 complement(993791..995557) 1 NC_011080.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 995557 cydD 423368001165 cydD Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_002040155.1 993791 R 423368 CDS YP_002040156.1 194443128 complement(995671..996639) 1 NC_011080.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase 996639 trxB 423368001166 trxB Salmonella enterica subsp. enterica serovar Newport str. SL254 thioredoxin reductase YP_002040156.1 995671 R 423368 CDS YP_002040157.1 194444219 complement(996803..996955) 1 NC_011080.1 identified by glimmer; hypothetical protein 996955 423368001167 SNSL254_A0992 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040157.1 996803 R 423368 CDS YP_002040158.1 194443719 997185..997679 1 NC_011080.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 997679 lrp 423368001168 lrp Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine-responsive transcriptional regulator YP_002040158.1 997185 D 423368 CDS YP_002040159.1 194445292 997814..1001896 1 NC_011080.1 DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 1001896 423368001169 SNSL254_A0994 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA translocase FtsK YP_002040159.1 997814 D 423368 CDS YP_002040160.1 194445389 1002039..1002650 1 NC_011080.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1002650 lolA 423368001170 lolA Salmonella enterica subsp. enterica serovar Newport str. SL254 outer-membrane lipoprotein carrier protein YP_002040160.1 1002039 D 423368 CDS YP_002040161.1 194446297 1002660..1004003 1 NC_011080.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 1004003 423368001171 SNSL254_A0996 Salmonella enterica subsp. enterica serovar Newport str. SL254 recombination factor protein RarA YP_002040161.1 1002660 D 423368 CDS YP_002040162.1 194445741 1004262..1005554 1 NC_011080.1 'catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; seryl-tRNA synthetase 1005554 serS 423368001172 serS Salmonella enterica subsp. enterica serovar Newport str. SL254 seryl-tRNA synthetase YP_002040162.1 1004262 D 423368 CDS YP_002040163.1 194443475 1005792..1008236 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 1008236 423368001173 SNSL254_A0998 Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic dimethyl sulfoxide reductase subunit A YP_002040163.1 1005792 D 423368 CDS YP_002040164.1 194442816 1008247..1008864 1 NC_011080.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B 1008864 dmsB_2 423368001174 dmsB_2 Salmonella enterica subsp. enterica serovar Newport str. SL254 dimethylsulfoxide reductase subunit B YP_002040164.1 1008247 D 423368 CDS YP_002040165.1 194445042 1008866..1009729 1 NC_011080.1 identified by match to protein family HMM PF04976; dmso reductase anchor subunit 1009729 dmsC 423368001175 dmsC Salmonella enterica subsp. enterica serovar Newport str. SL254 dmso reductase anchor subunit YP_002040165.1 1008866 D 423368 CDS YP_002040166.1 194444300 1010079..1011227 1 NC_011080.1 identified by match to protein family HMM PF07690; MFS family transporter protein 1011227 423368001176 SNSL254_A1001 Salmonella enterica subsp. enterica serovar Newport str. SL254 MFS family transporter protein YP_002040166.1 1010079 D 423368 CDS YP_002040167.1 194445881 1011445..1012866 1 NC_011080.1 identified by match to protein family HMM PF00324; inner membrane transporter YcaM 1012866 423368001177 SNSL254_A1002 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transporter YcaM YP_002040167.1 1011445 D 423368 CDS YP_002040168.1 194446466 complement(1013167..1013964) 1 NC_011080.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1013964 pflA 423368001178 pflA Salmonella enterica subsp. enterica serovar Newport str. SL254 pyruvate formate lyase-activating enzyme 1 YP_002040168.1 1013167 R 423368 CDS YP_002040169.1 194442566 1014092..1014256 1 NC_011080.1 hypothetical protein 1014256 423368001179 SNSL254_A1004 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040169.1 1014092 D 423368 CDS YP_002040170.1 194443180 1014540..1015499 1 NC_011080.1 SopD-like protein 1015499 423368001180 SNSL254_A1005 Salmonella enterica subsp. enterica serovar Newport str. SL254 SopD-like protein YP_002040170.1 1014540 D 423368 CDS YP_002040171.1 194443827 complement(1015575..1017857) 1 NC_011080.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 1017857 pflB2 423368001181 pflB2 Salmonella enterica subsp. enterica serovar Newport str. SL254 formate acetyltransferase YP_002040171.1 1015575 R 423368 CDS YP_002040172.1 194444491 complement(1017917..1018732) 1 NC_011080.1 identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790; formate transporter FocA 1018732 423368001182 SNSL254_A1007 Salmonella enterica subsp. enterica serovar Newport str. SL254 formate transporter FocA YP_002040172.1 1017917 R 423368 CDS YP_002040173.1 194444939 complement(1019179..1021014) 1 NC_011080.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702; hypothetical protein 1021014 423368001183 SNSL254_A1008 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040173.1 1019179 R 423368 CDS YP_002040174.1 194444634 1021076..1021768 1 NC_011080.1 identified by match to protein family HMM PF04239; hypothetical protein 1021768 423368001184 SNSL254_A1009 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040174.1 1021076 D 423368 CDS YP_002040175.1 194443322 1021954..1023042 1 NC_011080.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1023042 serC 423368001185 serC Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoserine aminotransferase YP_002040175.1 1021954 D 423368 CDS YP_002040176.1 194446151 1023113..1024396 1 NC_011080.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1024396 aroA 423368001186 aroA Salmonella enterica subsp. enterica serovar Newport str. SL254 3-phosphoshikimate 1-carboxyvinyltransferase YP_002040176.1 1023113 D 423368 CDS YP_002040177.1 194445715 1024539..1025300 1 NC_011080.1 identified by match to protein family HMM PF01435; peptidase M48, Ste24p 1025300 423368001187 SNSL254_A1012 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidase M48, Ste24p YP_002040177.1 1024539 D 423368 CDS YP_002040178.1 194446322 1025473..1026156 1 NC_011080.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1026156 cmk 423368001188 cmk Salmonella enterica subsp. enterica serovar Newport str. SL254 cytidylate kinase YP_002040178.1 1025473 D 423368 CDS YP_002040179.1 194444412 1026270..1027943 1 NC_011080.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1027943 rpsA 423368001189 rpsA Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S1 YP_002040179.1 1026270 D 423368 CDS YP_002040180.1 194442716 1028099..1028383 1 NC_011080.1 'This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control'; integration host factor subunit beta 1028383 ihfB 423368001190 ihfB Salmonella enterica subsp. enterica serovar Newport str. SL254 integration host factor subunit beta YP_002040180.1 1028099 D 423368 CDS YP_002040181.1 194445241 1028664..1030877 1 NC_011080.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; hypothetical protein 1030877 423368001191 SNSL254_A1016 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040181.1 1028664 D 423368 CDS YP_002040182.1 194443714 1030914..1032662 1 NC_011080.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding protein/permease 1032662 msbA 423368001192 msbA Salmonella enterica subsp. enterica serovar Newport str. SL254 lipid transporter ATP-binding protein/permease YP_002040182.1 1030914 D 423368 CDS YP_002040183.1 194446364 1032659..1033636 1 NC_011080.1 'transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate'; tetraacyldisaccharide 4'-kinase 1033636 lpxK 423368001193 lpxK Salmonella enterica subsp. enterica serovar Newport str. SL254 tetraacyldisaccharide 4'-kinase YP_002040183.1 1032659 D 423368 CDS YP_002040184.1 194444733 1033680..1034912 1 NC_011080.1 identified by match to protein family HMM PF06224; hypothetical protein 1034912 423368001194 SNSL254_A1019 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040184.1 1033680 D 423368 CDS YP_002040185.1 194442769 1034964..1035146 1 NC_011080.1 identified by match to protein family HMM PF03966; hypothetical protein 1035146 423368001195 SNSL254_A1020 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040185.1 1034964 D 423368 CDS YP_002040186.1 194445731 1035143..1035889 1 NC_011080.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1035889 kdsB 423368001196 kdsB Salmonella enterica subsp. enterica serovar Newport str. SL254 3-deoxy-manno-octulosonate cytidylyltransferase YP_002040186.1 1035143 D 423368 CDS YP_002040187.1 194442604 1036100..1036993 1 NC_011080.1 hypothetical protein 1036993 423368001197 SNSL254_A1022 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040187.1 1036100 D 423368 CDS YP_002040188.1 194443111 complement(1036973..1037749) 1 NC_011080.1 identified by match to protein family HMM PF02698; hypothetical protein 1037749 423368001198 SNSL254_A1023 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040188.1 1036973 R 423368 CDS YP_002040189.1 194446491 1037885..1038688 1 NC_011080.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA 1038688 smtA 423368001199 smtA Salmonella enterica subsp. enterica serovar Newport str. SL254 metallothionein SmtA YP_002040189.1 1037885 D 423368 CDS YP_002040190.1 194445664 1038681..1040003 1 NC_011080.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1040003 mukF 423368001200 mukF Salmonella enterica subsp. enterica serovar Newport str. SL254 condesin subunit F YP_002040190.1 1038681 D 423368 CDS YP_002040191.1 194443496 1039957..1040688 1 NC_011080.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1040688 mukE 423368001201 mukE Salmonella enterica subsp. enterica serovar Newport str. SL254 condesin subunit E YP_002040191.1 1039957 D 423368 CDS YP_002040192.1 194445503 1040688..1045154 1 NC_011080.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1045154 mukB 423368001202 mukB Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein MukB YP_002040192.1 1040688 D 423368 CDS YP_002040193.1 194442554 1045499..1047346 1 NC_011080.1 identified by match to protein family HMM PF01471; hypothetical protein 1047346 423368001203 SNSL254_A1028 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040193.1 1045499 D 423368 CDS YP_002040194.1 194444467 1047606..1048154 1 NC_011080.1 identified by match to protein family HMM PF05951; match to protein family HMM PF08291; Tat (twin-arginine translocation) pathway signal sequence domain/peptidase M15 family protein 1048154 423368001204 SNSL254_A1029 Salmonella enterica subsp. enterica serovar Newport str. SL254 Tat (twin-arginine translocation) pathway signal sequence domain/peptidase M15 family protein YP_002040194.1 1047606 D 423368 CDS YP_002040195.1 194446110 1048182..1048829 1 NC_011080.1 identified by match to protein family HMM PF00753; hydroxyacylglutathione hydrolase 1048829 423368001205 SNSL254_A1030 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydroxyacylglutathione hydrolase YP_002040195.1 1048182 D 423368 CDS YP_002040196.1 194445730 complement(1048891..1050081) 1 NC_011080.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1050081 aspC 423368001206 aspC Salmonella enterica subsp. enterica serovar Newport str. SL254 aromatic amino acid aminotransferase YP_002040196.1 1048891 R 423368 CDS YP_002040197.1 194446503 complement(1050266..1051357) 1 NC_011080.1 identified by match to protein family HMM PF00267; outer membrane protein F 1051357 423368001207 SNSL254_A1032 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein F YP_002040197.1 1050266 R 423368 CDS YP_002040198.1 194445388 1051647..1051799 1 NC_011080.1 identified by glimmer; hypothetical protein 1051799 423368001208 SNSL254_A1033 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040198.1 1051647 D 423368 CDS YP_002040199.1 194445306 complement(1051888..1052007) 1 NC_011080.1 identified by glimmer; hypothetical protein 1052007 423368001209 SNSL254_A1034 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040199.1 1051888 R 423368 CDS YP_002040200.1 194443471 complement(1051964..1053364) 1 NC_011080.1 'catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; asparaginyl-tRNA synthetase 1053364 asnC 423368001210 asnC Salmonella enterica subsp. enterica serovar Newport str. SL254 asparaginyl-tRNA synthetase YP_002040200.1 1051964 R 423368 CDS YP_002040201.1 194443985 complement(1053565..1054026) 1 NC_011080.1 identified by match to protein family HMM PF01037; leucine regulator 1054026 423368001211 SNSL254_A1036 Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine regulator YP_002040201.1 1053565 R 423368 CDS YP_002040202.1 194442227 complement(1054023..1054244) 1 NC_011080.1 identified by glimmer; hypothetical protein 1054244 423368001212 SNSL254_A1037 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040202.1 1054023 R 423368 CDS YP_002040203.1 194443204 1054343..1055557 1 NC_011080.1 'catalyzes the formation of pyruvate from 2,3-diaminopropionate'; diaminopropionate ammonia-lyase 1055557 dpaL 423368001213 dpaL Salmonella enterica subsp. enterica serovar Newport str. SL254 diaminopropionate ammonia-lyase YP_002040203.1 1054343 D 423368 CDS YP_002040204.1 194446020 1055631..1055789 1 NC_011080.1 hypothetical protein 1055789 423368001214 SNSL254_A1039 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040204.1 1055631 D 423368 CDS YP_002040205.1 194446587 1055803..1057236 1 NC_011080.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; transcriptional regulator, Lrp family 1057236 423368001215 SNSL254_A1040 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator, Lrp family YP_002040205.1 1055803 D 423368 CDS YP_002040206.1 194446397 complement(1057317..1058519) 1 NC_011080.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1058519 pncB 423368001216 pncB Salmonella enterica subsp. enterica serovar Newport str. SL254 nicotinate phosphoribosyltransferase YP_002040206.1 1057317 R 423368 CDS YP_002040207.1 194444835 complement(1058714..1060006) 1 NC_011080.1 identified by match to protein family HMM PF00589; integrase 1060006 423368001217 SNSL254_A1042 Salmonella enterica subsp. enterica serovar Newport str. SL254 integrase YP_002040207.1 1058714 R 423368 CDS YP_002040208.1 194444339 complement(1060051..1060299) 1 NC_011080.1 identified by match to protein family HMM PF06806; excisionase 1060299 423368001218 SNSL254_A1043 Salmonella enterica subsp. enterica serovar Newport str. SL254 excisionase YP_002040208.1 1060051 R 423368 CDS YP_002040209.1 194443427 complement(1060340..1060579) 1 NC_011080.1 hypothetical protein 1060579 423368001219 SNSL254_A1044 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040209.1 1060340 R 423368 CDS YP_002040210.1 194443314 complement(1060622..1061731) 1 NC_011080.1 identified by match to protein family HMM PF03837; gifsy-2 prophage RecT 1061731 423368001220 SNSL254_A1045 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-2 prophage RecT YP_002040210.1 1060622 R 423368 CDS YP_002040211.1 194442376 complement(1061742..1064627) 1 NC_011080.1 identified by match to protein family HMM PF06630; gifsy-1 prophage RecE 1064627 423368001221 SNSL254_A1046 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-1 prophage RecE YP_002040211.1 1061742 R 423368 CDS YP_002040212.1 194446340 complement(1064754..1064990) 1 NC_011080.1 hypothetical protein 1064990 423368001222 SNSL254_A1047 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040212.1 1064754 R 423368 CDS YP_002040213.1 194446566 complement(1065075..1065233) 1 NC_011080.1 hypothetical protein 1065233 423368001223 SNSL254_A1048 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040213.1 1065075 R 423368 CDS YP_002040214.1 194445268 1065355..1065501 1 NC_011080.1 identified by glimmer; hypothetical protein 1065501 423368001224 SNSL254_A1049 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040214.1 1065355 D 423368 CDS YP_002040215.2 448967510 complement(1065536..1065946) 1 NC_011080.1 regulatory protein 1065946 423368001225 SNSL254_A1050 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein YP_002040215.2 1065536 R 423368 CDS YP_002040216.2 448967511 1066325..1066645 1 NC_011080.1 Gifsy-1 prophage cI protein 1066645 423368001226 SNSL254_A1051 Salmonella enterica subsp. enterica serovar Newport str. SL254 Gifsy-1 prophage cI protein YP_002040216.2 1066325 D 423368 CDS YP_002040217.1 194442499 1066636..1066752 1 NC_011080.1 identified by glimmer; hypothetical protein 1066752 423368001227 SNSL254_A1052 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040217.1 1066636 D 423368 CDS YP_002040218.1 194442972 1066730..1067713 1 NC_011080.1 identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; gifsy-1 prophage PrpO 1067713 423368001228 SNSL254_A1053 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-1 prophage PrpO YP_002040218.1 1066730 D 423368 CDS YP_002040219.1 194445919 1067716..1068465 1 NC_011080.1 identified by match to protein family HMM PF01695; replication protein 1068465 423368001229 SNSL254_A1054 Salmonella enterica subsp. enterica serovar Newport str. SL254 replication protein YP_002040219.1 1067716 D 423368 CDS YP_002040220.1 194446291 1068476..1068823 1 NC_011080.1 identified by match to protein family HMM PF06163; hypothetical protein 1068823 423368001230 SNSL254_A1055 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040220.1 1068476 D 423368 CDS YP_002040221.1 194446111 1069347..1069499 1 NC_011080.1 hypothetical protein 1069499 423368001232 SNSL254_A1057 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040221.1 1069347 D 423368 CDS YP_002040222.1 194444417 1069791..1070024 1 NC_011080.1 identified by match to protein family HMM PF06183; hypothetical protein 1070024 423368001233 SNSL254_A1058 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040222.1 1069791 D 423368 CDS YP_002040223.1 194444778 1070440..1071042 1 NC_011080.1 identified by match to protein family HMM PF07105; gifsy-2 prophage protein 1071042 423368001234 SNSL254_A1059 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-2 prophage protein YP_002040223.1 1070440 D 423368 CDS YP_002040224.1 194443009 1071042..1071248 1 NC_011080.1 hypothetical protein 1071248 423368001235 SNSL254_A1060 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040224.1 1071042 D 423368 CDS YP_002040225.1 194445481 1071251..1071862 1 NC_011080.1 identified by match to protein family HMM PF05766; bacteriophage Lambda NinG protein 1071862 423368001236 SNSL254_A1061 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage Lambda NinG protein YP_002040225.1 1071251 D 423368 CDS YP_002040226.1 194446051 1071995..1072792 1 NC_011080.1 antitermination protein Q 1072792 423368001237 SNSL254_A1062 Salmonella enterica subsp. enterica serovar Newport str. SL254 antitermination protein Q YP_002040226.1 1071995 D 423368 CDS YP_002040227.1 194445621 complement(1074421..1074894) 1 NC_011080.1 hypothetical protein 1074894 423368001238 SNSL254_A1063 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040227.1 1074421 R 423368 CDS YP_002040228.1 194444965 1075377..1075712 1 NC_011080.1 identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family 1075712 423368001239 SNSL254_A1064 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage holin, lambda family YP_002040228.1 1075377 D 423368 CDS YP_002040229.1 194444024 1075699..1076148 1 NC_011080.1 identified by match to protein family HMM PF00959; phage lysozyme 1076148 423368001240 SNSL254_A1065 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage lysozyme YP_002040229.1 1075699 D 423368 CDS YP_002040230.1 194443394 1076166..1076645 1 NC_011080.1 identified by match to protein family HMM PF03245; bacteriophage lysis protein 1076645 423368001241 SNSL254_A1066 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage lysis protein YP_002040230.1 1076166 D 423368 CDS YP_002040231.1 194442947 1076853..1077386 1 NC_011080.1 identified by match to protein family HMM PF07278; gifsy-2 prophage protein 1077386 423368001242 SNSL254_A1067 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-2 prophage protein YP_002040231.1 1076853 D 423368 CDS YP_002040232.1 194443150 1077340..1079481 1 NC_011080.1 identified by match to protein family HMM PF05876; phage terminase large subunit 1079481 423368001243 SNSL254_A1068 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage terminase large subunit YP_002040232.1 1077340 D 423368 CDS YP_002040233.1 194444845 1079478..1079684 1 NC_011080.1 hypothetical protein 1079684 423368001244 SNSL254_A1069 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040233.1 1079478 D 423368 CDS YP_002040234.1 194446809 1079681..1081228 1 NC_011080.1 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; phage portal protein lambda family 1081228 423368001245 SNSL254_A1070 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage portal protein lambda family YP_002040234.1 1079681 D 423368 CDS YP_002040235.1 194443858 1081179..1083233 1 NC_011080.1 identified by match to protein family HMM PF00574; ATP-dependent protease 1083233 423368001246 SNSL254_A1071 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent protease YP_002040235.1 1081179 D 423368 CDS YP_002040236.1 194446586 1083324..1083647 1 NC_011080.1 recombinase A 1083647 423368001247 SNSL254_A1072 Salmonella enterica subsp. enterica serovar Newport str. SL254 recombinase A YP_002040236.1 1083324 D 423368 CDS YP_002040237.1 194442487 1083640..1083939 1 NC_011080.1 hypothetical protein 1083939 423368001248 SNSL254_A1073 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040237.1 1083640 D 423368 CDS YP_002040238.1 194442928 1083920..1084486 1 NC_011080.1 identified by match to protein family HMM PF06763; prophage minor tail protein Z 1084486 423368001249 SNSL254_A1074 Salmonella enterica subsp. enterica serovar Newport str. SL254 prophage minor tail protein Z YP_002040238.1 1083920 D 423368 CDS YP_002040239.1 194443449 1084483..1084884 1 NC_011080.1 identified by match to protein family HMM PF06141; phage minor tail protein U 1084884 423368001250 SNSL254_A1075 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage minor tail protein U YP_002040239.1 1084483 D 423368 CDS YP_002040240.1 194443957 1084896..1085645 1 NC_011080.1 identified by match to protein family HMM PF02368; gifsy-2 prophage VmtV 1085645 423368001251 SNSL254_A1076 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-2 prophage VmtV YP_002040240.1 1084896 D 423368 CDS YP_002040241.1 194446593 1085691..1086089 1 NC_011080.1 identified by match to protein family HMM PF06894; match to protein family HMM TIGR01674; phage minor tail protein G 1086089 423368001252 SNSL254_A1077 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage minor tail protein G YP_002040241.1 1085691 D 423368 CDS YP_002040242.1 194445056 1086152..1086415 1 NC_011080.1 identified by match to protein family HMM PF06223; match to protein family HMM TIGR01715; phage tail assembly protein T 1086415 423368001253 SNSL254_A1078 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail assembly protein T YP_002040242.1 1086152 D 423368 CDS YP_002040243.1 194442929 1086396..1089482 1 NC_011080.1 identified by match to protein family HMM PF06791; match to protein family HMM PF09718; match to protein family HMM TIGR01541; gifsy-1 prophage VmtH 1089482 423368001254 SNSL254_A1079 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-1 prophage VmtH YP_002040243.1 1086396 D 423368 CDS YP_002040244.1 194446036 1089479..1089811 1 NC_011080.1 identified by match to protein family HMM PF05939; phage minor tail protein 1089811 423368001255 SNSL254_A1080 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage minor tail protein YP_002040244.1 1089479 D 423368 CDS YP_002040245.1 194443743 complement(1090524..1091057) 1 NC_011080.1 identified by match to protein family HMM PF00080; copper/zinc superoxide dismutase 1091057 sodC 423368001257 sodC Salmonella enterica subsp. enterica serovar Newport str. SL254 copper/zinc superoxide dismutase YP_002040245.1 1090524 R 423368 CDS YP_002040246.1 194446170 1091147..1091842 1 NC_011080.1 identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600; phage minor tail protein L 1091842 423368001258 SNSL254_A1083 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage minor tail protein L YP_002040246.1 1091147 D 423368 CDS YP_002040247.2 448967512 1091852..1092589 1 NC_011080.1 identified by match to protein family HMM PF00877; tail assembly protein 1092589 423368001259 SNSL254_A1084 Salmonella enterica subsp. enterica serovar Newport str. SL254 tail assembly protein YP_002040247.2 1091852 D 423368 CDS YP_002040248.2 448967513 1092487..1093191 1 NC_011080.1 identified by match to protein family HMM PF06805; bacteriophage lambda tail assembly protein I 1093191 423368001260 SNSL254_A1085 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage lambda tail assembly protein I YP_002040248.2 1092487 D 423368 CDS YP_002040249.1 194446675 1093263..1096613 1 NC_011080.1 identified by match to protein family HMM PF00041; match to protein family HMM PF09327; host specificity protein J 1096613 423368001261 SNSL254_A1086 Salmonella enterica subsp. enterica serovar Newport str. SL254 host specificity protein J YP_002040249.1 1093263 D 423368 CDS YP_002040250.1 194443945 1096652..1096894 1 NC_011080.1 hypothetical protein 1096894 423368001262 SNSL254_A1087 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040250.1 1096652 D 423368 CDS YP_002040253.2 448967514 1096948..1099386 1 NC_011080.1 identified by match to protein family HMM PF03406; match to protein family HMM PF07484; tail fiber protein 1099386 423368001263 SNSL254_A1090 Salmonella enterica subsp. enterica serovar Newport str. SL254 tail fiber protein YP_002040253.2 1096948 D 423368 CDS YP_002040254.1 194446624 1099386..1099967 1 NC_011080.1 identified by match to protein family HMM PF02413; tail fiber assembly like-protein 1099967 423368001264 SNSL254_A1091 Salmonella enterica subsp. enterica serovar Newport str. SL254 tail fiber assembly like-protein YP_002040254.1 1099386 D 423368 CDS YP_002040255.1 194445326 1100443..1101411 1 NC_011080.1 secreted effector protein 1101411 423368001265 SNSL254_A1092 Salmonella enterica subsp. enterica serovar Newport str. SL254 secreted effector protein YP_002040255.1 1100443 D 423368 CDS YP_002040256.1 194445740 complement(1102059..1102685) 1 NC_011080.1 identified by match to protein family HMM PF02586; hypothetical protein 1102685 423368001267 SNSL254_A1095 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040256.1 1102059 R 423368 CDS YP_002040257.1 194445090 1102667..1102816 1 NC_011080.1 hypothetical protein 1102816 423368001268 SNSL254_A1094 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040257.1 1102667 D 423368 CDS YP_002040258.1 194442701 complement(1103038..1103724) 1 NC_011080.1 gifsy-2 prophage protein 1103724 423368001269 SNSL254_A1096 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-2 prophage protein YP_002040258.1 1103038 R 423368 CDS YP_002040259.1 194446722 complement(1103995..1104186) 1 NC_011080.1 Gifsy-2 prophage MsgA 1104186 423368001270 SNSL254_A1097 Salmonella enterica subsp. enterica serovar Newport str. SL254 Gifsy-2 prophage MsgA YP_002040259.1 1103995 R 423368 CDS YP_002040260.1 194442847 1104613..1107225 1 NC_011080.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase 1107225 pepN 423368001271 pepN Salmonella enterica subsp. enterica serovar Newport str. SL254 aminopeptidase YP_002040260.1 1104613 D 423368 CDS YP_002040261.1 194442283 1107433..1108443 1 NC_011080.1 'catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors'; dihydroorotate dehydrogenase 2 1108443 pyrD 423368001272 pyrD Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydroorotate dehydrogenase 2 YP_002040261.1 1107433 D 423368 CDS YP_002040262.1 194443529 1108609..1109151 1 NC_011080.1 identified by match to protein family HMM PF07126; hypothetical protein 1109151 423368001273 SNSL254_A1100 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040262.1 1108609 D 423368 CDS YP_002040263.1 194444212 complement(1109148..1110257) 1 NC_011080.1 identified by match to protein family HMM PF00111; match to protein family HMM PF03473; match to protein family HMM PF03476; MOSC domain-containing protein 1110257 423368001274 SNSL254_A1101 Salmonella enterica subsp. enterica serovar Newport str. SL254 MOSC domain-containing protein YP_002040263.1 1109148 R 423368 CDS YP_002040264.1 194444574 1110356..1112464 1 NC_011080.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1112464 rlmL 423368001275 rlmL Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA m(2)G2445 methyltransferase YP_002040264.1 1110356 D 423368 CDS YP_002040265.1 194445231 1112477..1114384 1 NC_011080.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1114384 423368001276 SNSL254_A1103 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATPase YP_002040265.1 1112477 D 423368 CDS YP_002040266.1 194446385 1114399..1115652 1 NC_011080.1 identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; paraquat-inducible protein A 1115652 423368001277 SNSL254_A1104 Salmonella enterica subsp. enterica serovar Newport str. SL254 paraquat-inducible protein A YP_002040266.1 1114399 D 423368 CDS YP_002040267.1 194442433 1115657..1117297 1 NC_011080.1 identified by match to protein family HMM PF02470; paraquat-inducible protein B 1117297 423368001278 SNSL254_A1105 Salmonella enterica subsp. enterica serovar Newport str. SL254 paraquat-inducible protein B YP_002040267.1 1115657 D 423368 CDS YP_002040268.1 194445877 1117294..1117857 1 NC_011080.1 identified by match to protein family HMM PF03886; lipoprotein 1117857 423368001279 SNSL254_A1106 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002040268.1 1117294 D 423368 CDS YP_002040269.1 194445228 complement(1117812..1117949) 1 NC_011080.1 identified by glimmer; hypothetical protein 1117949 423368001280 SNSL254_A1107 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040269.1 1117812 R 423368 CDS YP_002040270.1 194443688 complement(1118380..1118898) 1 NC_011080.1 'catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP'; 3-hydroxydecanoyl-ACP dehydratase 1118898 fabA 423368001281 fabA Salmonella enterica subsp. enterica serovar Newport str. SL254 3-hydroxydecanoyl-ACP dehydratase YP_002040270.1 1118380 R 423368 CDS YP_002040271.1 194444334 complement(1118967..1120727) 1 NC_011080.1 identified by match to protein family HMM PF05362; protease La 1120727 423368001282 SNSL254_A1109 Salmonella enterica subsp. enterica serovar Newport str. SL254 protease La YP_002040271.1 1118967 R 423368 CDS YP_002040272.1 194442814 1120913..1121365 1 NC_011080.1 identified by match to protein family HMM PF06303; hypothetical protein 1121365 423368001283 SNSL254_A1110 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040272.1 1120913 D 423368 CDS YP_002040273.1 194443312 complement(1121437..1122513) 1 NC_011080.1 'OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d'; outer membrane protein A 1122513 ompA 423368001284 ompA Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein A YP_002040273.1 1121437 R 423368 CDS YP_002040274.1 194445943 complement(1122846..1123355) 1 NC_011080.1 identified by match to protein family HMM PF03846; match to protein family HMM TIGR00623; SOS cell division inhibitor 1123355 423368001285 SNSL254_A1112 Salmonella enterica subsp. enterica serovar Newport str. SL254 SOS cell division inhibitor YP_002040274.1 1122846 R 423368 CDS YP_002040275.1 194442968 1123572..1124177 1 NC_011080.1 identified by match to protein family HMM PF04993; match to protein family HMM PF04994; TfoX family protein 1124177 423368001286 SNSL254_A1113 Salmonella enterica subsp. enterica serovar Newport str. SL254 TfoX family protein YP_002040275.1 1123572 D 423368 CDS YP_002040276.1 194446006 complement(1124164..1126317) 1 NC_011080.1 identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667; hypothetical protein 1126317 yccS 423368001287 yccS Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040276.1 1124164 R 423368 CDS YP_002040277.1 194443066 complement(1126336..1126782) 1 NC_011080.1 identified by match to protein family HMM PF03733; hypothetical protein 1126782 423368001288 SNSL254_A1115 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040277.1 1126336 R 423368 CDS YP_002040278.1 194446484 1126906..1128960 1 NC_011080.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1128960 helD 423368001289 helD Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA helicase IV YP_002040278.1 1126906 D 423368 CDS YP_002040279.1 194442365 complement(1128996..1129454) 1 NC_011080.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1129454 mgsA 423368001290 mgsA Salmonella enterica subsp. enterica serovar Newport str. SL254 methylglyoxal synthase YP_002040279.1 1128996 R 423368 CDS YP_002040280.1 194444628 complement(1129549..1130211) 1 NC_011080.1 hypothetical protein 1130211 423368001291 SNSL254_A1118 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040280.1 1129549 R 423368 CDS YP_002040281.1 194443348 complement(1130843..1131160) 1 NC_011080.1 identified by match to protein family HMM PF08755; match to protein family HMM TIGR02097; heat shock protein HspQ 1131160 423368001293 SNSL254_A1120 Salmonella enterica subsp. enterica serovar Newport str. SL254 heat shock protein HspQ YP_002040281.1 1130843 R 423368 CDS YP_002040282.1 194444397 complement(1131218..1132429) 1 NC_011080.1 SAM-dependent methyltransferase 1132429 423368001294 SNSL254_A1121 Salmonella enterica subsp. enterica serovar Newport str. SL254 SAM-dependent methyltransferase YP_002040282.1 1131218 R 423368 CDS YP_002040283.1 194442354 1132644..1133192 1 NC_011080.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 1133192 423368001295 SNSL254_A1122 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040283.1 1132644 D 423368 CDS YP_002040284.1 194443013 1133209..1133997 1 NC_011080.1 identified by match to protein family HMM PF00165; araC family transcriptional regulator 1133997 423368001296 SNSL254_A1123 Salmonella enterica subsp. enterica serovar Newport str. SL254 araC family transcriptional regulator YP_002040284.1 1133209 D 423368 CDS YP_002040285.1 194446649 1134046..1134327 1 NC_011080.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1134327 423368001297 SNSL254_A1124 Salmonella enterica subsp. enterica serovar Newport str. SL254 acylphosphatase YP_002040285.1 1134046 D 423368 CDS YP_002040286.1 194445878 complement(1134324..1134653) 1 NC_011080.1 transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE 1134653 423368001298 SNSL254_A1125 Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfur transfer protein TusE YP_002040286.1 1134324 R 423368 CDS YP_002040287.1 194444830 complement(1134740..1135399) 1 NC_011080.1 identified by match to protein family HMM PF01027; hypothetical protein 1135399 423368001299 SNSL254_A1126 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040287.1 1134740 R 423368 CDS YP_002040288.1 194445547 1135465..1135614 1 NC_011080.1 identified by glimmer; hypothetical protein 1135614 423368001300 SNSL254_A1127 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040288.1 1135465 D 423368 CDS YP_002040289.1 194444962 complement(1135987..1137006) 1 NC_011080.1 identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family 1137006 423368001302 SNSL254_A1129 Salmonella enterica subsp. enterica serovar Newport str. SL254 site-specific recombinase, phage integrase family YP_002040289.1 1135987 R 423368 CDS YP_002040290.1 194445606 complement(1137007..1137231) 1 NC_011080.1 hypothetical protein 1137231 423368001303 SNSL254_A1130 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040290.1 1137007 R 423368 CDS YP_002040291.1 194442897 complement(1137444..1137626) 1 NC_011080.1 hypothetical protein 1137626 423368001304 SNSL254_A1131 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040291.1 1137444 R 423368 CDS YP_002040292.1 194443423 complement(1137629..1138183) 1 NC_011080.1 hypothetical protein 1138183 423368001305 SNSL254_A1132 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040292.1 1137629 R 423368 CDS YP_002040293.1 194445571 complement(1138180..1140444) 1 NC_011080.1 hypothetical protein 1140444 423368001306 SNSL254_A1133 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040293.1 1138180 R 423368 CDS YP_002040294.1 194445630 complement(1140474..1140719) 1 NC_011080.1 hypothetical protein 1140719 423368001307 SNSL254_A1134 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040294.1 1140474 R 423368 CDS YP_002040295.1 194443364 complement(1140727..1141050) 1 NC_011080.1 identified by glimmer; hypothetical protein 1141050 423368001308 SNSL254_A1135 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040295.1 1140727 R 423368 CDS YP_002040296.1 194444030 complement(1142446..1142661) 1 NC_011080.1 identified by glimmer; hypothetical protein 1142661 423368001309 SNSL254_A1136 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040296.1 1142446 R 423368 CDS YP_002040297.1 194442372 1142695..1143042 1 NC_011080.1 hypothetical protein 1143042 423368001310 SNSL254_A1137 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040297.1 1142695 D 423368 CDS YP_002040298.1 194443008 1143065..1143289 1 NC_011080.1 hypothetical protein 1143289 423368001311 SNSL254_A1138 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040298.1 1143065 D 423368 CDS YP_002040299.1 194444747 1143292..1144272 1 NC_011080.1 replication protein 1144272 423368001312 SNSL254_A1139 Salmonella enterica subsp. enterica serovar Newport str. SL254 replication protein YP_002040299.1 1143292 D 423368 CDS YP_002040300.1 194445290 1144269..1145657 1 NC_011080.1 identified by match to protein family HMM PF03796; replicative DNA helicase 1145657 423368001313 SNSL254_A1140 Salmonella enterica subsp. enterica serovar Newport str. SL254 replicative DNA helicase YP_002040300.1 1144269 D 423368 CDS YP_002040301.1 194445488 1145695..1146375 1 NC_011080.1 hypothetical protein 1146375 423368001314 SNSL254_A1141 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040301.1 1145695 D 423368 CDS YP_002040302.1 194443666 1146379..1146627 1 NC_011080.1 hypothetical protein 1146627 423368001315 SNSL254_A1142 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040302.1 1146379 D 423368 CDS YP_002040303.1 194442685 1146620..1147222 1 NC_011080.1 identified by match to protein family HMM PF05063; adenine methylase 1147222 423368001316 SNSL254_A1143 Salmonella enterica subsp. enterica serovar Newport str. SL254 adenine methylase YP_002040303.1 1146620 D 423368 CDS YP_002040304.1 194444224 1147389..1147727 1 NC_011080.1 hypothetical protein 1147727 423368001317 SNSL254_A1144 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040304.1 1147389 D 423368 CDS YP_002040305.1 194445708 1147911..1148102 1 NC_011080.1 hypothetical protein 1148102 423368001318 SNSL254_A1145 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040305.1 1147911 D 423368 CDS YP_002040306.1 194443276 1148171..1148767 1 NC_011080.1 identified by match to protein family HMM PF07105; gifsy-2 prophage protein 1148767 423368001319 SNSL254_A1146 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-2 prophage protein YP_002040306.1 1148171 D 423368 CDS YP_002040307.1 194446315 1149054..1149632 1 NC_011080.1 identified by match to protein family HMM PF06576; hypothetical protein 1149632 423368001320 SNSL254_A1147 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040307.1 1149054 D 423368 CDS YP_002040308.1 194445668 1150025..1150213 1 NC_011080.1 identified by glimmer; hypothetical protein 1150213 423368001321 SNSL254_A1148 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040308.1 1150025 D 423368 CDS YP_002040309.1 194445299 1150410..1150718 1 NC_011080.1 phage-holin analog protein 1150718 423368001322 SNSL254_A1149 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage-holin analog protein YP_002040309.1 1150410 D 423368 CDS YP_002040310.1 194444753 1150696..1151235 1 NC_011080.1 identified by match to protein family HMM PF00959; lysozyme 1151235 423368001323 SNSL254_A1150 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysozyme YP_002040310.1 1150696 D 423368 CDS YP_002040311.1 194446247 1151405..1151542 1 NC_011080.1 bacteriophage protein 1151542 423368001324 SNSL254_A1151 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040311.1 1151405 D 423368 CDS YP_002040312.1 194445792 1151577..1152008 1 NC_011080.1 identified by match to protein family HMM PF03245; bacteriophage lysis protein 1152008 423368001325 SNSL254_A1152 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage lysis protein YP_002040312.1 1151577 D 423368 CDS YP_002040313.1 194446532 1152509..1153138 1 NC_011080.1 hypothetical protein 1153138 423368001326 SNSL254_A1153 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040313.1 1152509 D 423368 CDS YP_002040314.1 194445851 1153141..1154763 1 NC_011080.1 gp33 TerL 1154763 423368001327 SNSL254_A1154 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp33 TerL YP_002040314.1 1153141 D 423368 CDS YP_002040315.1 194443077 1154796..1156232 1 NC_011080.1 identified by match to protein family HMM PF09714; match to protein family HMM TIGR01555; phage-associated protein family 1156232 423368001328 SNSL254_A1155 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage-associated protein family YP_002040315.1 1154796 D 423368 CDS YP_002040316.1 194442593 1156246..1156863 1 NC_011080.1 identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; phage Mu protein F like protein 1156863 423368001329 SNSL254_A1156 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage Mu protein F like protein YP_002040316.1 1156246 D 423368 CDS YP_002040317.1 194445811 1156867..1158099 1 NC_011080.1 hypothetical protein 1158099 423368001330 SNSL254_A1157 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040317.1 1156867 D 423368 CDS YP_002040318.1 194442833 1158104..1158601 1 NC_011080.1 bacteriophage protein 1158601 423368001331 SNSL254_A1158 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040318.1 1158104 D 423368 CDS YP_002040319.1 194444568 1158613..1159554 1 NC_011080.1 bacteriophage protein 1159554 423368001332 SNSL254_A1159 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040319.1 1158613 D 423368 CDS YP_002040320.1 194446363 1159596..1159985 1 NC_011080.1 bacteriophage protein 1159985 423368001333 SNSL254_A1160 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040320.1 1159596 D 423368 CDS YP_002040321.1 194443723 1159951..1160358 1 NC_011080.1 bacteriophage protein 1160358 423368001334 SNSL254_A1161 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040321.1 1159951 D 423368 CDS YP_002040322.1 194445534 1160355..1160909 1 NC_011080.1 bacteriophage protein 1160909 423368001335 SNSL254_A1162 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040322.1 1160355 D 423368 CDS YP_002040323.1 194445242 1160896..1161285 1 NC_011080.1 bacteriophage protein 1161285 423368001336 SNSL254_A1163 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040323.1 1160896 D 423368 CDS YP_002040324.1 194444770 1161260..1161823 1 NC_011080.1 bacteriophage protein 1161823 423368001337 SNSL254_A1164 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040324.1 1161260 D 423368 CDS YP_002040325.1 194446264 1161827..1162972 1 NC_011080.1 bacteriophage protein 1162972 423368001338 SNSL254_A1165 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040325.1 1161827 D 423368 CDS YP_002040326.1 194445757 1162985..1163428 1 NC_011080.1 bacteriophage protein 1163428 423368001339 SNSL254_A1166 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040326.1 1162985 D 423368 CDS YP_002040327.1 194443813 1163432..1163884 1 NC_011080.1 bacteriophage protein 1163884 423368001340 SNSL254_A1167 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040327.1 1163432 D 423368 CDS YP_002040328.1 194444831 1164062..1166071 1 NC_011080.1 identified by match to protein family HMM PF01464; lytic transglycosylase, catalytic 1166071 423368001341 SNSL254_A1168 Salmonella enterica subsp. enterica serovar Newport str. SL254 lytic transglycosylase, catalytic YP_002040328.1 1164062 D 423368 CDS YP_002040329.1 194446684 1166071..1166646 1 NC_011080.1 bacteriophage protein 1166646 423368001342 SNSL254_A1169 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040329.1 1166071 D 423368 CDS YP_002040330.1 194445143 1166646..1166948 1 NC_011080.1 bacteriophage protein 1166948 423368001343 SNSL254_A1170 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040330.1 1166646 D 423368 CDS YP_002040331.1 194442325 1166951..1168018 1 NC_011080.1 bacteriophage protein 1168018 423368001344 SNSL254_A1171 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040331.1 1166951 D 423368 CDS YP_002040332.1 194446446 1168183..1168347 1 NC_011080.1 hypothetical protein 1168347 423368001345 SNSL254_A1172 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040332.1 1168183 D 423368 CDS YP_002040333.1 194445067 complement(1168431..1168886) 1 NC_011080.1 identified by glimmer; hypothetical protein 1168886 423368001346 SNSL254_A1173 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040333.1 1168431 R 423368 CDS YP_002040334.1 194445523 1169005..1169757 1 NC_011080.1 bacteriophage protein 1169757 423368001347 SNSL254_A1174 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040334.1 1169005 D 423368 CDS YP_002040335.1 194444487 1169757..1170110 1 NC_011080.1 bacteriophage protein 1170110 423368001348 SNSL254_A1175 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040335.1 1169757 D 423368 CDS YP_002040336.1 194443659 1170111..1171310 1 NC_011080.1 bacteriophage protein 1171310 423368001349 SNSL254_A1176 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040336.1 1170111 D 423368 CDS YP_002040337.1 194445112 1171307..1171987 1 NC_011080.1 bacteriophage protein 1171987 423368001350 SNSL254_A1177 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002040337.1 1171307 D 423368 CDS YP_008083620.1 513538097 1171987..1173519 1 NC_011080.1 side tail fiber protein 1173519 423368001351 SNSL254_A1178 Salmonella enterica subsp. enterica serovar Newport str. SL254 side tail fiber protein YP_008083620.1 1171987 D 423368 CDS YP_002040339.1 194444669 1173525..1174052 1 NC_011080.1 identified by match to protein family HMM PF02413; tail fiber assembly protein 1174052 423368001352 SNSL254_A1179 Salmonella enterica subsp. enterica serovar Newport str. SL254 tail fiber assembly protein YP_002040339.1 1173525 D 423368 CDS YP_002040340.1 194446359 complement(1174341..1174466) 1 NC_011080.1 identified by glimmer; hypothetical protein 1174466 423368001353 SNSL254_A1180 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040340.1 1174341 R 423368 CDS YP_002040341.1 194443117 1174519..1175157 1 NC_011080.1 phage tail assembly protein 1175157 423368001354 SNSL254_A1181 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail assembly protein YP_002040341.1 1174519 D 423368 CDS YP_002040342.1 194442506 1175267..1175659 1 NC_011080.1 identified by match to protein family HMM PF07087; hypothetical protein 1175659 423368001355 SNSL254_A1182 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040342.1 1175267 D 423368 CDS YP_002040343.1 194443854 complement(1176525..1176944) 1 NC_011080.1 identified by glimmer; hypothetical protein 1176944 423368001356 SNSL254_A1183 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040343.1 1176525 R 423368 CDS YP_002040344.1 194444342 complement(1177884..1178387) 1 NC_011080.1 pathogenicity island-encoded protein A 1178387 423368001357 SNSL254_A1184 Salmonella enterica subsp. enterica serovar Newport str. SL254 pathogenicity island-encoded protein A YP_002040344.1 1177884 R 423368 CDS YP_002040345.1 194442885 complement(1178786..1179661) 1 NC_011080.1 identified by match to protein family HMM PF00805; secreted effector protein 1179661 423368001358 SNSL254_A1185 Salmonella enterica subsp. enterica serovar Newport str. SL254 secreted effector protein YP_002040345.1 1178786 R 423368 CDS YP_002040346.1 194443320 complement(1180209..1180550) 1 NC_011080.1 identified by match to protein family HMM PF07824; chaperone protein SigE 1180550 423368001359 SNSL254_A1186 Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone protein SigE YP_002040346.1 1180209 R 423368 CDS YP_002040347.1 194446467 complement(1180567..1182252) 1 NC_011080.1 identified by match to protein family HMM PF05925; inositol phosphate phosphatase SopB 1182252 423368001360 SNSL254_A1187 Salmonella enterica subsp. enterica serovar Newport str. SL254 inositol phosphate phosphatase SopB YP_002040347.1 1180567 R 423368 CDS YP_002040348.1 194442239 1182614..1182754 1 NC_011080.1 hypothetical protein 1182754 423368001361 SNSL254_A1188 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040348.1 1182614 D 423368 CDS YP_002040349.1 194445507 complement(1182974..1184536) 1 NC_011080.1 identified by match to protein family HMM PF03577; peptidase family C69 1184536 423368001362 SNSL254_A1189 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidase family C69 YP_002040349.1 1182974 R 423368 CDS YP_002040350.1 194445691 complement(1184616..1185980) 1 NC_011080.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386; heavy metal sensor kinase subfamily 1185980 423368001363 SNSL254_A1190 Salmonella enterica subsp. enterica serovar Newport str. SL254 heavy metal sensor kinase subfamily YP_002040350.1 1184616 R 423368 CDS YP_002040351.1 194444465 complement(1185973..1186653) 1 NC_011080.1 induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW 1186653 423368001364 SNSL254_A1191 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulatory protein YedW YP_002040351.1 1185973 R 423368 CDS YP_002040352.1 194445100 1186789..1187199 1 NC_011080.1 identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; hydroxyisourate hydrolase 1187199 uraH 423368001365 uraH Salmonella enterica subsp. enterica serovar Newport str. SL254 hydroxyisourate hydrolase YP_002040352.1 1186789 D 423368 CDS YP_002040353.1 194444415 complement(1187532..1188044) 1 NC_011080.1 identified by match to protein family HMM PF01613; match to protein family HMM TIGR02296; 4-hydroxyphenylacetate 3-monooxygenase, reductase component 1188044 hpaC 423368001366 hpaC Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxyphenylacetate 3-monooxygenase, reductase component YP_002040353.1 1187532 R 423368 CDS YP_002040354.1 194444049 complement(1188062..1189624) 1 NC_011080.1 identified by match to protein family HMM PF03241; match to protein family HMM TIGR02310; 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 1189624 hpaB 423368001367 hpaB Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component YP_002040354.1 1188062 R 423368 CDS YP_002040355.1 194443965 complement(1189842..1190282) 1 NC_011080.1 identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337; homoprotocatechuate degradation operon regulator HpaR 1190282 hpaR 423368001368 hpaR Salmonella enterica subsp. enterica serovar Newport str. SL254 homoprotocatechuate degradation operon regulator HpaR YP_002040355.1 1189842 R 423368 CDS YP_002040356.1 194443584 1190557..1191846 1 NC_011080.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303; match to protein family HMM TIGR02305; bifunctional 4-hydroxyphenylacetate degradation isomerase/decarboxylase 1191846 423368001369 SNSL254_A1196 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional 4-hydroxyphenylacetate degradation isomerase/decarboxylase YP_002040356.1 1190557 D 423368 CDS YP_002040357.1 194445601 1191843..1193309 1 NC_011080.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 1193309 hpaE 423368001370 hpaE Salmonella enterica subsp. enterica serovar Newport str. SL254 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_002040357.1 1191843 D 423368 CDS YP_002040358.1 194444630 1193311..1194162 1 NC_011080.1 identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1194162 hpaD 423368001371 hpaD Salmonella enterica subsp. enterica serovar Newport str. SL254 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_002040358.1 1193311 D 423368 CDS YP_002040359.1 194446200 1194172..1194552 1 NC_011080.1 identified by match to protein family HMM PF02962; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1194552 hpcD 423368001372 hpcD Salmonella enterica subsp. enterica serovar Newport str. SL254 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_002040359.1 1194172 D 423368 CDS YP_002040360.1 194443099 1194697..1195500 1 NC_011080.1 identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1195500 hpaH 423368001373 hpaH Salmonella enterica subsp. enterica serovar Newport str. SL254 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_002040360.1 1194697 D 423368 CDS YP_002040361.1 194442865 1195511..1196302 1 NC_011080.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1196302 hpaI 423368001374 hpaI Salmonella enterica subsp. enterica serovar Newport str. SL254 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_002040361.1 1195511 D 423368 CDS YP_002040362.1 194444382 1196374..1197750 1 NC_011080.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR02332; 4-hydroxyphenylacetate permease 1197750 hpaX 423368001375 hpaX Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxyphenylacetate permease YP_002040362.1 1196374 D 423368 CDS YP_002040363.1 194445424 1197760..1198656 1 NC_011080.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM TIGR02297; 4-hydroxyphenylacetate catabolism regulatory protein HpaA 1198656 hpaA 423368001376 hpaA Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxyphenylacetate catabolism regulatory protein HpaA YP_002040363.1 1197760 D 423368 CDS YP_002040364.1 194445325 1198670..1199608 1 NC_011080.1 identified by match to protein family HMM PF00753; hypothetical protein 1199608 423368001377 SNSL254_A1204 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040364.1 1198670 D 423368 CDS YP_002040365.1 194445803 1200826..1200981 1 NC_011080.1 hypothetical protein 1200981 423368001378 SNSL254_A1205 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040365.1 1200826 D 423368 CDS YP_002040366.1 194446290 complement(1201032..1201337) 1 NC_011080.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM 1201337 423368001379 SNSL254_A1206 Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone-modulator protein CbpM YP_002040366.1 1201032 R 423368 CDS YP_002040367.1 194442808 complement(1201337..1202257) 1 NC_011080.1 'functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock'; curved DNA-binding protein CbpA 1202257 423368001380 SNSL254_A1207 Salmonella enterica subsp. enterica serovar Newport str. SL254 curved DNA-binding protein CbpA YP_002040367.1 1201337 R 423368 CDS YP_002040368.1 194443908 1202493..1202855 1 NC_011080.1 membrane protein suppressor for copper-sensitivity A 1202855 423368001381 SNSL254_A1208 Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane protein suppressor for copper-sensitivity A YP_002040368.1 1202493 D 423368 CDS YP_002040369.1 194444365 1202904..1204790 1 NC_011080.1 identified by match to protein family HMM PF02683; membrane protein suppressor for copper-sensitivity B 1204790 423368001382 SNSL254_A1209 Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane protein suppressor for copper-sensitivity B YP_002040369.1 1202904 D 423368 CDS YP_002040370.1 194444870 1204787..1205410 1 NC_011080.1 identified by match to protein family HMM PF01323; copper sensitivity supression protein 1205410 423368001383 SNSL254_A1210 Salmonella enterica subsp. enterica serovar Newport str. SL254 copper sensitivity supression protein YP_002040370.1 1204787 D 423368 CDS YP_002040371.1 194444268 1205400..1205906 1 NC_011080.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; suppressor for copper-sensitivity D 1205906 423368001384 SNSL254_A1211 Salmonella enterica subsp. enterica serovar Newport str. SL254 suppressor for copper-sensitivity D YP_002040371.1 1205400 D 423368 CDS YP_002040372.1 194444948 1206039..1207280 1 NC_011080.1 identified by match to protein family HMM PF00328; glucose-1-phosphatase/inositol phosphatase 1207280 423368001385 SNSL254_A1212 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucose-1-phosphatase/inositol phosphatase YP_002040372.1 1206039 D 423368 CDS YP_002040373.1 194444279 complement(1207314..1207541) 1 NC_011080.1 hypothetical protein 1207541 423368001386 SNSL254_A1213 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040373.1 1207314 R 423368 CDS YP_002040374.1 194443770 complement(1207562..1208158) 1 NC_011080.1 stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 1208158 wrbA 423368001387 wrbA Salmonella enterica subsp. enterica serovar Newport str. SL254 TrpR binding protein WrbA YP_002040374.1 1207562 R 423368 CDS YP_002040375.1 194446485 1208556..1208750 1 NC_011080.1 hypothetical protein 1208750 423368001388 SNSL254_A1215 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040375.1 1208556 D 423368 CDS YP_002040376.1 194446026 1208846..1209484 1 NC_011080.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08362; HTH-type transcriptional regulator RutR 1209484 423368001389 SNSL254_A1216 Salmonella enterica subsp. enterica serovar Newport str. SL254 HTH-type transcriptional regulator RutR YP_002040376.1 1208846 D 423368 CDS YP_002040377.1 194445821 complement(1209481..1209876) 1 NC_011080.1 identified by match to protein family HMM PF07007; hypothetical protein 1209876 423368001390 SNSL254_A1217 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040377.1 1209481 R 423368 CDS YP_002040378.1 194443196 complement(1209935..1213897) 1 NC_011080.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; multifunctional functional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1213897 putA 423368001391 putA Salmonella enterica subsp. enterica serovar Newport str. SL254 multifunctional functional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_002040378.1 1209935 R 423368 CDS YP_002040379.1 194443976 1214319..1215827 1 NC_011080.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter 1215827 putP 423368001392 putP Salmonella enterica subsp. enterica serovar Newport str. SL254 sodium/proline symporter YP_002040379.1 1214319 D 423368 CDS YP_008083621.1 513538098 1216720..1217508 1 NC_011080.1 hypothetical protein 1217508 423368001393 SNSL254_A1221 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083621.1 1216720 D 423368 CDS YP_002040380.1 194445265 complement(1217614..1218495) 1 NC_011080.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator 1218495 423368001394 SNSL254_A1222 Salmonella enterica subsp. enterica serovar Newport str. SL254 RpiR family transcriptional regulator YP_002040380.1 1217614 R 423368 CDS YP_002040381.1 194446720 complement(1218781..1220277) 1 NC_011080.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium-glucose/galactose cotransporter 1220277 423368001395 SNSL254_A1223 Salmonella enterica subsp. enterica serovar Newport str. SL254 sodium-glucose/galactose cotransporter YP_002040381.1 1218781 R 423368 CDS YP_002040382.1 194446189 complement(1220614..1221294) 1 NC_011080.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 1221294 423368001396 SNSL254_A1224 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylmannosamine-6-phosphate 2-epimerase YP_002040382.1 1220614 R 423368 CDS YP_002040383.1 194445375 1221800..1222960 1 NC_011080.1 identified by match to protein family HMM PF01344; match to protein family HMM PF07646; match to protein family HMM TIGR03547; N-acetylneuraminic acid mutarotase 1222960 423368001397 SNSL254_A1225 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylneuraminic acid mutarotase YP_002040383.1 1221800 D 423368 CDS YP_002040384.1 194445032 1223006..1223698 1 NC_011080.1 identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 1223698 423368001398 SNSL254_A1226 Salmonella enterica subsp. enterica serovar Newport str. SL254 oligogalacturonate-specific porin YP_002040384.1 1223006 D 423368 CDS YP_002040385.1 194444129 1223981..1225261 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; sialic acid transporter 1225261 423368001399 SNSL254_A1227 Salmonella enterica subsp. enterica serovar Newport str. SL254 sialic acid transporter YP_002040385.1 1223981 D 423368 CDS YP_002040386.1 194443420 1225275..1226378 1 NC_011080.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase YjhC 1226378 423368001400 SNSL254_A1228 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase YjhC YP_002040386.1 1225275 D 423368 CDS YP_002040387.1 194442536 complement(1226689..1226853) 1 NC_011080.1 identified by glimmer; hypothetical protein 1226853 423368001402 SNSL254_A1231 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040387.1 1226689 R 423368 CDS YP_002040388.1 194442483 1226852..1227790 1 NC_011080.1 identified by match to protein family HMM PF02826; 2-hydroxyacid dehydrogenase 1227790 423368001403 SNSL254_A1230 Salmonella enterica subsp. enterica serovar Newport str. SL254 2-hydroxyacid dehydrogenase YP_002040388.1 1226852 D 423368 CDS YP_002040389.1 194444451 1227875..1228612 1 NC_011080.1 identified by match to protein family HMM PF02811; hydrolase 1228612 423368001404 SNSL254_A1232 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrolase YP_002040389.1 1227875 D 423368 CDS YP_002040390.1 194442781 1228636..1229190 1 NC_011080.1 identified by match to protein family HMM PF06192; TorD family chaperone 1229190 423368001405 SNSL254_A1233 Salmonella enterica subsp. enterica serovar Newport str. SL254 TorD family chaperone YP_002040390.1 1228636 D 423368 CDS YP_002040391.1 194445094 1229279..1229773 1 NC_011080.1 identified by match to protein family HMM PF06496; hypothetical protein 1229773 423368001406 SNSL254_A1234 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040391.1 1229279 D 423368 CDS YP_002040392.1 194443410 complement(1229812..1230645) 1 NC_011080.1 identified by match to protein family HMM PF03783; curli production assembly/transport component CsgG 1230645 423368001407 SNSL254_A1235 Salmonella enterica subsp. enterica serovar Newport str. SL254 curli production assembly/transport component CsgG YP_002040392.1 1229812 R 423368 CDS YP_002040393.1 194445950 complement(1230672..1231088) 1 NC_011080.1 nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF 1231088 423368001408 SNSL254_A1236 Salmonella enterica subsp. enterica serovar Newport str. SL254 curli assembly protein CsgF YP_002040393.1 1230672 R 423368 CDS YP_002040394.1 194445965 complement(1231115..1231510) 1 NC_011080.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 1231510 423368001409 SNSL254_A1237 Salmonella enterica subsp. enterica serovar Newport str. SL254 curli assembly protein CsgE YP_002040394.1 1231115 R 423368 CDS YP_002040395.1 194444624 complement(1231515..1232165) 1 NC_011080.1 activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD 1232165 csgD 423368001410 csgD Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator CsgD YP_002040395.1 1231515 R 423368 CDS YP_002040396.1 194445298 1232920..1233375 1 NC_011080.1 CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1233375 csgB 423368001411 csgB Salmonella enterica subsp. enterica serovar Newport str. SL254 curlin minor subunit YP_002040396.1 1232920 D 423368 CDS YP_002040397.1 194443782 1233417..1233872 1 NC_011080.1 identified by match to protein family HMM PF07012; cryptic curlin major subunit 1233872 423368001412 SNSL254_A1240 Salmonella enterica subsp. enterica serovar Newport str. SL254 cryptic curlin major subunit YP_002040397.1 1233417 D 423368 CDS YP_002040398.1 194444445 1233934..1234260 1 NC_011080.1 involved in autoagglutination of curliated cells; not involved in production of curli fibers; autoagglutination protein 1234260 csgC 423368001413 csgC Salmonella enterica subsp. enterica serovar Newport str. SL254 autoagglutination protein YP_002040398.1 1233934 D 423368 CDS YP_002040399.1 194442570 1234391..1234711 1 NC_011080.1 hypothetical protein 1234711 423368001414 SNSL254_A1242 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040399.1 1234391 D 423368 CDS YP_002040400.1 194443183 1234799..1235338 1 NC_011080.1 identified by match to protein family HMM PF01661; hypothetical protein 1235338 423368001415 SNSL254_A1243 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040400.1 1234799 D 423368 CDS YP_002040401.2 448967515 1235274..1236761 1 NC_011080.1 identified by match to protein family HMM PF00614; phopholipase D 1236761 423368001416 SNSL254_A1244 Salmonella enterica subsp. enterica serovar Newport str. SL254 phopholipase D YP_002040401.2 1235274 D 423368 CDS YP_002040402.1 194442322 complement(1236778..1237932) 1 NC_011080.1 required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein 1237932 mdoC 423368001417 mdoC Salmonella enterica subsp. enterica serovar Newport str. SL254 glucans biosynthesis protein YP_002040402.1 1236778 R 423368 CDS YP_002040403.1 194443960 1238186..1239739 1 NC_011080.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1239739 mdoG 423368001418 mdoG Salmonella enterica subsp. enterica serovar Newport str. SL254 glucan biosynthesis protein G YP_002040403.1 1238186 D 423368 CDS YP_002040404.1 194445922 1239732..1242275 1 NC_011080.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1242275 423368001419 SNSL254_A1247 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucosyltransferase MdoH YP_002040404.1 1239732 D 423368 CDS YP_002040405.1 194443179 1242373..1242576 1 NC_011080.1 identified by match to protein family HMM PF07119; hypothetical protein 1242576 423368001420 SNSL254_A1248 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040405.1 1242373 D 423368 CDS YP_002040406.1 194446667 complement(1242577..1242951) 1 NC_011080.1 hypothetical protein 1242951 423368001421 SNSL254_A1249 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040406.1 1242577 R 423368 CDS YP_002040407.1 194446171 complement(1243033..1244247) 1 NC_011080.1 Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG 1244247 423368001422 SNSL254_A1250 Salmonella enterica subsp. enterica serovar Newport str. SL254 drug efflux system protein MdtG YP_002040407.1 1243033 R 423368 CDS YP_002040408.1 194445518 complement(1244402..1245322) 1 NC_011080.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1245322 423368001423 SNSL254_A1251 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipid A biosynthesis lauroyl acyltransferase YP_002040408.1 1244402 R 423368 CDS YP_002040409.1 194445151 1245542..1246594 1 NC_011080.1 identified by match to protein family HMM PF00581; hypothetical protein 1246594 423368001424 SNSL254_A1252 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040409.1 1245542 D 423368 CDS YP_002040410.1 194442911 complement(1246646..1247221) 1 NC_011080.1 identified by match to protein family HMM PF04264; hypothetical protein 1247221 423368001425 SNSL254_A1253 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040410.1 1246646 R 423368 CDS YP_002040411.1 194442397 complement(1247218..1247796) 1 NC_011080.1 identified by match to protein family HMM PF01292; hypothetical protein 1247796 423368001426 SNSL254_A1254 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040411.1 1247218 R 423368 CDS YP_002040412.1 194442655 1247801..1248004 1 NC_011080.1 hypothetical protein 1248004 423368001427 SNSL254_A1255 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040412.1 1247801 D 423368 CDS YP_002040413.1 194443264 complement(1248053..1248166) 1 NC_011080.1 hypothetical protein 1248166 423368001428 SNSL254_A1256 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040413.1 1248053 R 423368 CDS YP_002040414.1 194443753 complement(1248207..1249325) 1 NC_011080.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 1249325 solA 423368001429 solA Salmonella enterica subsp. enterica serovar Newport str. SL254 N-methyltryptophan oxidase YP_002040414.1 1248207 R 423368 CDS YP_002040415.1 194444413 complement(1249438..1249692) 1 NC_011080.1 'BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing'; biofilm formation regulatory protein BssS 1249692 bssS 423368001430 bssS Salmonella enterica subsp. enterica serovar Newport str. SL254 biofilm formation regulatory protein BssS YP_002040415.1 1249438 R 423368 CDS YP_002040416.1 194444656 complement(1249982..1250227) 1 NC_011080.1 identified by match to protein family HMM PF06183; DNA damage-inducible protein I 1250227 dinI 423368001431 dinI Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA damage-inducible protein I YP_002040416.1 1249982 R 423368 CDS YP_002040417.1 194445421 complement(1250301..1251347) 1 NC_011080.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1251347 pyrC 423368001432 pyrC Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydroorotase YP_002040417.1 1250301 R 423368 CDS YP_002040418.1 194443270 complement(1251451..1252011) 1 NC_011080.1 identified by match to protein family HMM PF07273; hypothetical protein 1252011 423368001433 SNSL254_A1261 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040418.1 1251451 R 423368 CDS YP_002040419.1 194442648 complement(1252136..1252783) 1 NC_011080.1 cofactor involved in the reduction of disulfides; glutaredoxin 1252783 grxB 423368001434 grxB Salmonella enterica subsp. enterica serovar Newport str. SL254 glutaredoxin YP_002040419.1 1252136 R 423368 CDS YP_002040420.1 194442315 complement(1252847..1254055) 1 NC_011080.1 Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 1254055 423368001435 SNSL254_A1263 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug resistance protein MdtH YP_002040420.1 1252847 R 423368 CDS YP_002040421.1 194446790 1254292..1254876 1 NC_011080.1 identified by match to protein family HMM PF00583; ribosomal-protein-S5-alanine N-acetyltransferase 1254876 423368001436 SNSL254_A1264 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosomal-protein-S5-alanine N-acetyltransferase YP_002040421.1 1254292 D 423368 CDS YP_002040422.1 194442700 1254912..1255559 1 NC_011080.1 identified by match to protein family HMM PF04337; hypothetical protein 1255559 423368001437 SNSL254_A1265 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040422.1 1254912 D 423368 CDS YP_002040423.1 194443241 1255561..1256484 1 NC_011080.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; hypothetical protein 1256484 423368001438 SNSL254_A1266 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040423.1 1255561 D 423368 CDS YP_002040424.1 194443717 1256749..1258323 1 NC_011080.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 1258323 mviN 423368001439 mviN Salmonella enterica subsp. enterica serovar Newport str. SL254 integral membrane protein MviN YP_002040424.1 1256749 D 423368 CDS YP_002040425.1 194444271 complement(1258405..1258797) 1 NC_011080.1 identified by match to protein family HMM PF05130; flagella synthesis protein FlgN 1258797 423368001440 SNSL254_A1268 Salmonella enterica subsp. enterica serovar Newport str. SL254 flagella synthesis protein FlgN YP_002040425.1 1258405 R 423368 CDS YP_002040426.1 194444668 complement(1258832..1259125) 1 NC_011080.1 regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM 1259125 423368001441 SNSL254_A1269 Salmonella enterica subsp. enterica serovar Newport str. SL254 anti-sigma-28 factor FlgM YP_002040426.1 1258832 R 423368 CDS YP_002040427.1 194445224 complement(1259217..1259876) 1 NC_011080.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1259876 flgA 423368001442 flgA Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar basal body P-ring biosynthesis protein FlgA YP_002040427.1 1259217 R 423368 CDS YP_002040428.1 194445886 1260033..1260449 1 NC_011080.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 1260449 flgB 423368001443 flgB Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar basal-body rod protein FlgB YP_002040428.1 1260033 D 423368 CDS YP_002040429.1 194446237 1260453..1260857 1 NC_011080.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1260857 flgC 423368001444 flgC Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar basal body rod protein FlgC YP_002040429.1 1260453 D 423368 CDS YP_002040430.1 194446242 1260869..1261567 1 NC_011080.1 'acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production'; flagellar basal body rod modification protein 1261567 flgD 423368001445 flgD Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar basal body rod modification protein YP_002040430.1 1260869 D 423368 CDS YP_002040431.1 194442954 1261594..1262805 1 NC_011080.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1262805 flgE 423368001446 flgE Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar hook protein FlgE YP_002040431.1 1261594 D 423368 CDS YP_002040432.1 194446055 1262826..1263581 1 NC_011080.1 'FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod'; flagellar basal body rod protein FlgF 1263581 flgF 423368001447 flgF Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar basal body rod protein FlgF YP_002040432.1 1262826 D 423368 CDS YP_002040433.1 194446556 1263595..1264377 1 NC_011080.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1264377 flgG 423368001448 flgG Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar basal body rod protein FlgG YP_002040433.1 1263595 D 423368 CDS YP_002040434.1 194444848 1264464..1265129 1 NC_011080.1 'part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod'; flagellar basal body L-ring protein 1265129 flgH 423368001449 flgH Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar basal body L-ring protein YP_002040434.1 1264464 D 423368 CDS YP_002040435.1 194444645 1265141..1266238 1 NC_011080.1 'part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum'; flagellar basal body P-ring protein 1266238 flgI 423368001450 flgI Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar basal body P-ring protein YP_002040435.1 1265141 D 423368 CDS YP_002040436.1 194446573 1266238..1267188 1 NC_011080.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1267188 flgJ 423368001451 flgJ Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar rod assembly protein/muramidase FlgJ YP_002040436.1 1266238 D 423368 CDS YP_002040437.1 194442729 1267253..1268914 1 NC_011080.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1268914 flgK 423368001452 flgK Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar hook-associated protein FlgK YP_002040437.1 1267253 D 423368 CDS YP_002040438.1 194445556 1268929..1269882 1 NC_011080.1 'with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes'; flagellar hook-associated protein FlgL 1269882 flgL 423368001453 flgL Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar hook-associated protein FlgL YP_002040438.1 1268929 D 423368 CDS YP_002040439.1 194445751 complement(1270138..1273344) 1 NC_011080.1 'bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase'; ribonuclease E 1273344 rne 423368001454 rne Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease E YP_002040439.1 1270138 R 423368 CDS YP_002040440.1 194444187 1273918..1274877 1 NC_011080.1 'catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA'; 23S rRNA pseudouridylate synthase C 1274877 423368001455 SNSL254_A1284 Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA pseudouridylate synthase C YP_002040440.1 1273918 D 423368 CDS YP_002040441.1 194445364 1275015..1275776 1 NC_011080.1 hypothetical protein 1275776 423368001456 SNSL254_A1285 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040441.1 1275015 D 423368 CDS YP_002040442.1 194444012 1275980..1276204 1 NC_011080.1 hypothetical protein 1276204 423368001457 SNSL254_A1286 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040442.1 1275980 D 423368 CDS YP_002040443.1 194443343 complement(1276275..1276859) 1 NC_011080.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1276859 maf 423368001458 maf Salmonella enterica subsp. enterica serovar Newport str. SL254 Maf-like protein YP_002040443.1 1276275 R 423368 CDS YP_002040444.1 194442413 1277057..1277578 1 NC_011080.1 identified by match to protein family HMM PF02620; hypothetical protein 1277578 423368001460 SNSL254_A1289 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040444.1 1277057 D 423368 CDS YP_002040445.1 194442994 complement(1277564..1277968) 1 NC_011080.1 identified by glimmer; hypothetical protein 1277968 423368001461 SNSL254_A1291 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040445.1 1277564 R 423368 CDS YP_002040446.1 194442616 1277937..1279016 1 NC_011080.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1279016 plsX 423368001462 plsX Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol-3-phosphate acyltransferase PlsX YP_002040446.1 1277937 D 423368 CDS YP_002040447.1 194446771 1279096..1280049 1 NC_011080.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1280049 fabH 423368001463 fabH Salmonella enterica subsp. enterica serovar Newport str. SL254 3-oxoacyl-ACP synthase YP_002040447.1 1279096 D 423368 CDS YP_002040448.1 194446118 1280065..1280994 1 NC_011080.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1280994 fabD 423368001464 fabD Salmonella enterica subsp. enterica serovar Newport str. SL254 malonyl CoA-acyl carrier protein transacylase YP_002040448.1 1280065 D 423368 CDS YP_002040449.1 194445550 1281007..1281741 1 NC_011080.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1281741 fabG 423368001465 fabG Salmonella enterica subsp. enterica serovar Newport str. SL254 3-ketoacyl-ACP reductase YP_002040449.1 1281007 D 423368 CDS YP_002040450.1 194444769 1281897..1282133 1 NC_011080.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1282133 acpP 423368001466 acpP Salmonella enterica subsp. enterica serovar Newport str. SL254 acyl carrier protein YP_002040450.1 1281897 D 423368 CDS YP_002040451.1 194446349 1282219..1283460 1 NC_011080.1 'FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP'; 3-oxoacyl-ACP synthase 1283460 fabF 423368001467 fabF Salmonella enterica subsp. enterica serovar Newport str. SL254 3-oxoacyl-ACP synthase YP_002040451.1 1282219 D 423368 CDS YP_002040452.1 194445380 1283584..1284393 1 NC_011080.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1284393 pabC 423368001468 pabC Salmonella enterica subsp. enterica serovar Newport str. SL254 4-amino-4-deoxychorismate lyase YP_002040452.1 1283584 D 423368 CDS YP_002040453.1 194445329 1284396..1285418 1 NC_011080.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 1285418 423368001469 SNSL254_A1298 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040453.1 1284396 D 423368 CDS YP_002040454.1 194443726 1285408..1286049 1 NC_011080.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1286049 tmk 423368001470 tmk Salmonella enterica subsp. enterica serovar Newport str. SL254 thymidylate kinase YP_002040454.1 1285408 D 423368 CDS YP_002040455.1 194444229 1286046..1287050 1 NC_011080.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1287050 423368001471 SNSL254_A1300 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase III subunit delta' YP_002040455.1 1286046 D 423368 CDS YP_002040456.1 194442254 1287061..1287858 1 NC_011080.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; metallodependent hydrolase 1287858 423368001472 SNSL254_A1301 Salmonella enterica subsp. enterica serovar Newport str. SL254 metallodependent hydrolase YP_002040456.1 1287061 D 423368 CDS YP_002040457.1 194443206 1288153..1289586 1 NC_011080.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 1289586 ptsG 423368001473 ptsG Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system glucose-specific transporter subunit IIBC YP_002040457.1 1288153 D 423368 CDS YP_002040458.1 194444804 complement(1289671..1291845) 1 NC_011080.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferric-rhodotorulic acid outer membrane transporter 1291845 423368001474 SNSL254_A1303 Salmonella enterica subsp. enterica serovar Newport str. SL254 ferric-rhodotorulic acid outer membrane transporter YP_002040458.1 1289671 R 423368 CDS YP_002040459.1 194445470 1292169..1292546 1 NC_011080.1 identified by match to protein family HMM PF01230; purine nucleoside phosphoramidase 1292546 423368001475 SNSL254_A1304 Salmonella enterica subsp. enterica serovar Newport str. SL254 purine nucleoside phosphoramidase YP_002040459.1 1292169 D 423368 CDS YP_002040460.1 194445172 1292549..1292923 1 NC_011080.1 identified by match to protein family HMM PF07233; outer membrane lipoprotein 1292923 423368001476 SNSL254_A1305 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein YP_002040460.1 1292549 D 423368 CDS YP_002040461.1 194446688 1292937..1293575 1 NC_011080.1 identified by match to protein family HMM TIGR02722; hypothetical protein 1293575 423368001477 SNSL254_A1306 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040461.1 1292937 D 423368 CDS YP_002040462.1 194443912 1293556..1294380 1 NC_011080.1 catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1294380 thiK 423368001478 thiK Salmonella enterica subsp. enterica serovar Newport str. SL254 thiamine kinase YP_002040462.1 1293556 D 423368 CDS YP_002040463.1 194444486 1294391..1295416 1 NC_011080.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1295416 nagZ 423368001479 nagZ Salmonella enterica subsp. enterica serovar Newport str. SL254 beta-hexosaminidase YP_002040463.1 1294391 D 423368 CDS YP_002040464.1 194442598 1295441..1295983 1 NC_011080.1 identified by match to protein family HMM PF05728; hypothetical protein 1295983 423368001480 SNSL254_A1309 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040464.1 1295441 D 423368 CDS YP_002040465.1 194442936 1296236..1297540 1 NC_011080.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992; NADH dehydrogenase 1297540 ndh 423368001481 ndh Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase YP_002040465.1 1296236 D 423368 CDS YP_002040466.1 194445937 1297719..1298258 1 NC_011080.1 identified by match to protein family HMM PF05433; hypothetical protein 1298258 423368001482 SNSL254_A1311 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040466.1 1297719 D 423368 CDS YP_002040467.1 194446289 complement(1298332..1298967) 1 NC_011080.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1298967 423368001483 SNSL254_A1312 Salmonella enterica subsp. enterica serovar Newport str. SL254 TetR family transcriptional regulator YP_002040467.1 1298332 R 423368 CDS YP_002040468.1 194444614 1299209..1299466 1 NC_011080.1 identified by match to protein family HMM PF07338; hypothetical protein 1299466 423368001484 SNSL254_A1313 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040468.1 1299209 D 423368 CDS YP_002040469.1 194444973 complement(1299563..1300528) 1 NC_011080.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734; LysM/ErfK/YbiS/YcfS/YnhG family protein 1300528 423368001485 SNSL254_A1314 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysM/ErfK/YbiS/YcfS/YnhG family protein YP_002040469.1 1299563 R 423368 CDS YP_002040470.1 194446626 complement(1300676..1304122) 1 NC_011080.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 1304122 mfd 423368001486 mfd Salmonella enterica subsp. enterica serovar Newport str. SL254 transcription-repair coupling factor YP_002040470.1 1300676 R 423368 CDS YP_002040471.1 194443101 1304128..1304286 1 NC_011080.1 identified by glimmer; hypothetical protein 1304286 423368001487 SNSL254_A1316 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040471.1 1304128 D 423368 CDS YP_002040472.1 194445682 1304460..1305659 1 NC_011080.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1305659 lolC 423368001488 lolC Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane-specific lipoprotein transporter subunit LolC YP_002040472.1 1304460 D 423368 CDS YP_002040473.1 194446361 1305652..1306353 1 NC_011080.1 'outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone'; lipoprotein transporter ATP-binding subunit 1306353 lolD 423368001489 lolD Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein transporter ATP-binding subunit YP_002040473.1 1305652 D 423368 CDS YP_002040474.1 194445190 1306353..1307597 1 NC_011080.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1307597 lolE 423368001490 lolE Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane-specific lipoprotein transporter subunit LolE YP_002040474.1 1306353 D 423368 CDS YP_002040475.1 194443499 1307626..1308537 1 NC_011080.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1308537 nagK 423368001491 nagK Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetyl-D-glucosamine kinase YP_002040475.1 1307626 D 423368 CDS YP_002040476.1 194444178 1308556..1309377 1 NC_011080.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1309377 423368001492 SNSL254_A1321 Salmonella enterica subsp. enterica serovar Newport str. SL254 NAD-dependent deacetylase YP_002040476.1 1308556 D 423368 CDS YP_002040477.1 194444275 complement(1309459..1310505) 1 NC_011080.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein 1310505 potD 423368001493 potD Salmonella enterica subsp. enterica serovar Newport str. SL254 spermidine/putrescine ABC transporter substrate-binding protein YP_002040477.1 1309459 R 423368 CDS YP_002040478.1 194445367 complement(1310530..1311309) 1 NC_011080.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter permease 1311309 potC 423368001494 potC Salmonella enterica subsp. enterica serovar Newport str. SL254 spermidine/putrescine ABC transporter permease YP_002040478.1 1310530 R 423368 CDS YP_002040479.1 194444676 complement(1311412..1311534) 1 NC_011080.1 identified by glimmer; hypothetical protein 1311534 423368001495 SNSL254_A1324 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040479.1 1311412 R 423368 CDS YP_002040480.1 194443686 complement(1311625..1312635) 1 NC_011080.1 translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein 1312635 sifA 423368001496 sifA Salmonella enterica subsp. enterica serovar Newport str. SL254 secreted effector protein YP_002040480.1 1311625 R 423368 CDS YP_002040481.1 194443909 complement(1312964..1313827) 1 NC_011080.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter permease 1313827 potB 423368001497 potB Salmonella enterica subsp. enterica serovar Newport str. SL254 spermidine/putrescine ABC transporter permease YP_002040481.1 1312964 R 423368 CDS YP_002040482.1 194446343 complement(1313811..1314947) 1 NC_011080.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 1314947 potA 423368001498 potA Salmonella enterica subsp. enterica serovar Newport str. SL254 putrescine/spermidine ABC transporter ATPase YP_002040482.1 1313811 R 423368 CDS YP_002040483.1 194445705 1315198..1316427 1 NC_011080.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1316427 pepT 423368001499 pepT Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidase T YP_002040483.1 1315198 D 423368 CDS YP_002040484.1 194445359 1316431..1317765 1 NC_011080.1 identified by match to protein family HMM PF07719; hypothetical protein 1317765 423368001500 SNSL254_A1329 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040484.1 1316431 D 423368 CDS YP_002040485.1 194444751 complement(1317805..1318926) 1 NC_011080.1 identified by match to protein family HMM PF08007; cupin family protein 1318926 423368001501 SNSL254_A1330 Salmonella enterica subsp. enterica serovar Newport str. SL254 cupin family protein YP_002040485.1 1317805 R 423368 CDS YP_002040486.1 194444857 complement(1319007..1320470) 1 NC_011080.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08918; sensor protein PhoQ 1320470 423368001502 SNSL254_A1331 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor protein PhoQ YP_002040486.1 1319007 R 423368 CDS YP_002040487.1 194444063 complement(1320470..1321144) 1 NC_011080.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP 1321144 423368001503 SNSL254_A1332 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator PhoP YP_002040487.1 1320470 R 423368 CDS YP_002040488.1 194443864 complement(1321268..1322638) 1 NC_011080.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1322638 purB 423368001504 purB Salmonella enterica subsp. enterica serovar Newport str. SL254 adenylosuccinate lyase YP_002040488.1 1321268 R 423368 CDS YP_002040489.1 194443110 complement(1322642..1323283) 1 NC_011080.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1323283 423368001505 SNSL254_A1334 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040489.1 1322642 R 423368 CDS YP_002040490.1 194444280 complement(1323370..1324476) 1 NC_011080.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1324476 mnmA 423368001506 mnmA Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA-specific 2-thiouridylase MnmA YP_002040490.1 1323370 R 423368 CDS YP_002040491.1 194443790 complement(1324530..1324991) 1 NC_011080.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 1324991 423368001507 SNSL254_A1336 Salmonella enterica subsp. enterica serovar Newport str. SL254 NUDIX family hydrolase YP_002040491.1 1324530 R 423368 CDS YP_002040492.1 194443121 complement(1325003..1325332) 1 NC_011080.1 hypothetical protein 1325332 423368001508 SNSL254_A1337 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040492.1 1325003 R 423368 CDS YP_002040493.2 448967516 complement(1325329..1325994) 1 NC_011080.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase E 1325994 423368001509 SNSL254_A1338 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosomal large subunit pseudouridine synthase E YP_002040493.2 1325329 R 423368 CDS YP_002040494.1 194446384 1326166..1327416 1 NC_011080.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1327416 icd 423368001510 icd Salmonella enterica subsp. enterica serovar Newport str. SL254 isocitrate dehydrogenase YP_002040494.1 1326166 D 423368 CDS YP_002040495.1 194446714 1327864..1328988 1 NC_011080.1 hypothetical protein 1328988 423368001511 SNSL254_A1340 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040495.1 1327864 D 423368 CDS YP_002040496.1 194445227 complement(1329020..1329178) 1 NC_011080.1 identified by glimmer; hypothetical protein 1329178 423368001512 SNSL254_A1341 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040496.1 1329020 R 423368 CDS YP_002040497.1 194444402 complement(1329979..1330767) 1 NC_011080.1 envelope protein EnvF 1330767 423368001513 SNSL254_A1343 Salmonella enterica subsp. enterica serovar Newport str. SL254 envelope protein EnvF YP_002040497.1 1329979 R 423368 CDS YP_002040498.1 194445381 complement(1331686..1332207) 1 NC_011080.1 identified by match to protein family HMM PF00652; envelope protein EnvE 1332207 423368001515 SNSL254_A1346 Salmonella enterica subsp. enterica serovar Newport str. SL254 envelope protein EnvE YP_002040498.1 1331686 R 423368 CDS YP_002040499.1 194445693 complement(1332876..1333004) 1 NC_011080.1 identified by glimmer; hypothetical protein 1333004 423368001516 SNSL254_A1347 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040499.1 1332876 R 423368 CDS YP_002040500.1 194446801 1333534..1333662 1 NC_011080.1 hypothetical protein 1333662 423368001517 SNSL254_A1348 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040500.1 1333534 D 423368 CDS YP_002040501.1 194444089 1334042..1334599 1 NC_011080.1 identified by match to protein family HMM PF06316; virulence membrane protein PagC 1334599 423368001518 SNSL254_A1349 Salmonella enterica subsp. enterica serovar Newport str. SL254 virulence membrane protein PagC YP_002040501.1 1334042 D 423368 CDS YP_002040502.1 194442393 complement(1335821..1336165) 1 NC_011080.1 PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1336165 423368001521 SNSL254_A1352 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysozyme inhibitor YP_002040502.1 1335821 R 423368 CDS YP_002040503.1 194444839 1336543..1336668 1 NC_011080.1 hypothetical protein 1336668 423368001522 SNSL254_A1353 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040503.1 1336543 D 423368 CDS YP_002040504.1 194445499 complement(1336800..1336973) 1 NC_011080.1 hypothetical protein 1336973 423368001523 SNSL254_A1354 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040504.1 1336800 R 423368 CDS YP_002040505.1 194446806 1337290..1337760 1 NC_011080.1 identified by match to protein family HMM PF00011; heat shock protein 1337760 423368001524 SNSL254_A1355 Salmonella enterica subsp. enterica serovar Newport str. SL254 heat shock protein YP_002040505.1 1337290 D 423368 CDS YP_002040506.1 194444968 1338099..1339142 1 NC_011080.1 hypothetical protein 1339142 423368001525 SNSL254_A1356 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040506.1 1338099 D 423368 CDS YP_002040507.1 194443303 complement(1339225..1339755) 1 NC_011080.1 identified by match to protein family HMM PF01292; nickel-dependent hydrogenase, B-type cytochrome subunit 1339755 423368001526 SNSL254_A1357 Salmonella enterica subsp. enterica serovar Newport str. SL254 nickel-dependent hydrogenase, B-type cytochrome subunit YP_002040507.1 1339225 R 423368 CDS YP_002040508.1 194445932 complement(1339904..1340218) 1 NC_011080.1 hypothetical protein 1340218 423368001527 SNSL254_A1358 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040508.1 1339904 R 423368 CDS YP_002040509.1 194446302 complement(1340309..1340467) 1 NC_011080.1 identified by glimmer; hypothetical protein 1340467 423368001528 SNSL254_A1359 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040509.1 1340309 R 423368 CDS YP_002040510.1 194442225 complement(1340613..1340756) 1 NC_011080.1 identified by glimmer; hypothetical protein 1340756 423368001529 SNSL254_A1360 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040510.1 1340613 R 423368 CDS YP_002040511.1 194443376 1340899..1342533 1 NC_011080.1 identified by match to protein family HMM PF00496; nickel ABC transporter substrate-binding protein 1342533 423368001530 SNSL254_A1361 Salmonella enterica subsp. enterica serovar Newport str. SL254 nickel ABC transporter substrate-binding protein YP_002040511.1 1340899 D 423368 CDS YP_002040512.1 194443870 1342533..1343507 1 NC_011080.1 identified by match to protein family HMM PF00528; dipeptide/oligopeptide/nickel ABC transporter permease 1343507 423368001531 SNSL254_A1362 Salmonella enterica subsp. enterica serovar Newport str. SL254 dipeptide/oligopeptide/nickel ABC transporter permease YP_002040512.1 1342533 D 423368 CDS YP_002040513.1 194444818 1343497..1344309 1 NC_011080.1 identified by match to protein family HMM PF00528; nickel/di-oligopepetide ABC transporter permease 1344309 423368001532 SNSL254_A1363 Salmonella enterica subsp. enterica serovar Newport str. SL254 nickel/di-oligopepetide ABC transporter permease YP_002040513.1 1343497 D 423368 CDS YP_002040514.1 194445514 1344303..1345100 1 NC_011080.1 identified by match to protein family HMM PF00005; nickel/di-oligopepetide ABC transporter ATP-binding protein 1345100 423368001533 SNSL254_A1364 Salmonella enterica subsp. enterica serovar Newport str. SL254 nickel/di-oligopepetide ABC transporter ATP-binding protein YP_002040514.1 1344303 D 423368 CDS YP_002040515.1 194445540 1345094..1345684 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1345684 423368001534 SNSL254_A1365 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002040515.1 1345094 D 423368 CDS YP_002040516.1 194446184 complement(1345766..1346899) 1 NC_011080.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel protein MscS 1346899 423368001535 SNSL254_A1366 Salmonella enterica subsp. enterica serovar Newport str. SL254 mechanosensitive ion channel protein MscS YP_002040516.1 1345766 R 423368 CDS YP_002040517.1 194445464 1347613..1348263 1 NC_011080.1 identified by match to protein family HMM PF09223; hypothetical protein 1348263 423368001537 SNSL254_A1369 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040517.1 1347613 D 423368 CDS YP_002040518.2 448967517 1348372..1349160 1 NC_011080.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1349160 423368001538 SNSL254_A1370 Salmonella enterica subsp. enterica serovar Newport str. SL254 aminoglycoside resistance protein YP_002040518.2 1348372 D 423368 CDS YP_002040519.1 194444182 1349251..1349898 1 NC_011080.1 identified by match to protein family HMM PF00196; regulatory protein 1349898 423368001539 SNSL254_A1371 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein YP_002040519.1 1349251 D 423368 CDS YP_002040520.1 194442918 1349967..1350815 1 NC_011080.1 identified by match to protein family HMM PF00376; transcriptional regulator 1350815 423368001540 SNSL254_A1372 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002040520.1 1349967 D 423368 CDS YP_002040521.2 448967518 complement(1351070..1351318) 1 NC_011080.1 hypothetical protein 1351318 423368001541 SNSL254_A1373 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040521.2 1351070 R 423368 CDS YP_002040522.1 194445040 1351646..1352191 1 NC_011080.1 catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1352191 423368001542 SNSL254_A1374 Salmonella enterica subsp. enterica serovar Newport str. SL254 chorismate mutase YP_002040522.1 1351646 D 423368 CDS YP_002040523.1 194445439 1352388..1353026 1 NC_011080.1 identified by match to protein family HMM PF01810; leucine export protein LeuE 1353026 423368001543 SNSL254_A1375 Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine export protein LeuE YP_002040523.1 1352388 D 423368 CDS YP_002040524.1 194445256 1353199..1353561 1 NC_011080.1 identified by match to protein family HMM PF09313; hypothetical protein 1353561 423368001544 SNSL254_A1376 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040524.1 1353199 D 423368 CDS YP_002040525.1 194443520 1353564..1353746 1 NC_011080.1 identified by match to protein family HMM PF08956; hypothetical protein 1353746 423368001545 SNSL254_A1377 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040525.1 1353564 D 423368 CDS YP_002040526.1 194444048 1353976..1354617 1 NC_011080.1 hypothetical protein 1354617 423368001546 SNSL254_A1378 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040526.1 1353976 D 423368 CDS YP_002040527.1 194442255 1354738..1354923 1 NC_011080.1 hypothetical protein 1354923 423368001548 SNSL254_A1379 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040527.1 1354738 D 423368 CDS YP_002040528.1 194444134 1354931..1355179 1 NC_011080.1 identified by match to protein family HMM PF04226; hypothetical protein 1355179 423368001549 SNSL254_A1381 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040528.1 1354931 D 423368 CDS YP_002040529.1 194443525 complement(1355241..1355357) 1 NC_011080.1 hypothetical protein 1355357 423368001550 SNSL254_A1382 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040529.1 1355241 R 423368 CDS YP_002040530.1 194446266 1355612..1355863 1 NC_011080.1 identified by match to protein family HMM PF03891; hemolysin 1355863 423368001551 SNSL254_A1383 Salmonella enterica subsp. enterica serovar Newport str. SL254 hemolysin YP_002040530.1 1355612 D 423368 CDS YP_002040531.1 194446142 1355932..1356243 1 NC_011080.1 hypothetical protein 1356243 423368001552 SNSL254_A1384 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040531.1 1355932 D 423368 CDS YP_002040532.1 194445774 complement(1356229..1356576) 1 NC_011080.1 identified by match to protein family HMM PF04343; hypothetical protein 1356576 423368001553 SNSL254_A1385 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040532.1 1356229 R 423368 CDS YP_002040533.1 194442475 1356591..1356728 1 NC_011080.1 identified by glimmer; hypothetical protein 1356728 423368001554 SNSL254_A1386 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040533.1 1356591 D 423368 CDS YP_002040534.1 194443300 complement(1356695..1357879) 1 NC_011080.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00896; inner membrane transport protein YeaN 1357879 423368001555 SNSL254_A1387 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport protein YeaN YP_002040534.1 1356695 R 423368 CDS YP_008083622.1 513538099 1357980..1358774 1 NC_011080.1 AraC family transcriptional regulator 1358774 423368001556 SNSL254_A1388 Salmonella enterica subsp. enterica serovar Newport str. SL254 AraC family transcriptional regulator YP_008083622.1 1357980 D 423368 CDS YP_002040535.1 194444265 complement(1358754..1359200) 1 NC_011080.1 identified by match to protein family HMM PF04284; hypothetical protein 1359200 423368001557 SNSL254_A1390 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040535.1 1358754 R 423368 CDS YP_002040536.1 194445046 1359187..1359339 1 NC_011080.1 hypothetical protein 1359339 423368001558 SNSL254_A1389 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040536.1 1359187 D 423368 CDS YP_002040537.1 194443401 complement(1359658..1360185) 1 NC_011080.1 identified by match to protein family HMM PF04073; prolyl-tRNA synthetase 1360185 423368001559 SNSL254_A1391 Salmonella enterica subsp. enterica serovar Newport str. SL254 prolyl-tRNA synthetase YP_002040537.1 1359658 R 423368 CDS YP_002040538.1 194444042 complement(1360226..1361719) 1 NC_011080.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain-containing protein 1361719 423368001560 SNSL254_A1392 Salmonella enterica subsp. enterica serovar Newport str. SL254 ggdef domain-containing protein YP_002040538.1 1360226 R 423368 CDS YP_002040539.1 194445926 1362019..1362237 1 NC_011080.1 identified by glimmer; hypothetical protein 1362237 423368001561 SNSL254_A1393 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040539.1 1362019 D 423368 CDS YP_002040540.1 194446284 complement(1362390..1363676) 1 NC_011080.1 identified by match to protein family HMM PF04285; hypothetical protein 1363676 423368001562 SNSL254_A1394 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040540.1 1362390 R 423368 CDS YP_002040541.1 194444772 1363677..1363796 1 NC_011080.1 identified by glimmer; hypothetical protein 1363796 423368001563 SNSL254_A1395 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040541.1 1363677 D 423368 CDS YP_002040542.1 194445300 complement(1363799..1365733) 1 NC_011080.1 identified by match to protein family HMM PF06798; match to protein family HMM PF08298; serine protein kinase PrkA 1365733 423368001564 SNSL254_A1396 Salmonella enterica subsp. enterica serovar Newport str. SL254 serine protein kinase PrkA YP_002040542.1 1363799 R 423368 CDS YP_002040543.2 448967519 1366159..1366905 1 NC_011080.1 identified by match to protein family HMM PF06629; MltA-interacting protein 1366905 423368001565 SNSL254_A1397 Salmonella enterica subsp. enterica serovar Newport str. SL254 MltA-interacting protein YP_002040543.2 1366159 D 423368 CDS YP_002040544.1 194444460 1367195..1368391 1 NC_011080.1 chondroitin sulfate/heparin utilization regulation protein 1368391 423368001566 SNSL254_A1398 Salmonella enterica subsp. enterica serovar Newport str. SL254 chondroitin sulfate/heparin utilization regulation protein YP_002040544.1 1367195 D 423368 CDS YP_002040545.1 194442651 1368497..1369345 1 NC_011080.1 identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 1369345 423368001567 SNSL254_A1399 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase, aldo/keto reductase family YP_002040545.1 1368497 D 423368 CDS YP_002040546.1 194443978 complement(1369444..1370328) 1 NC_011080.1 identified by match to protein family HMM PF01263; aldose 1-epimerase 1370328 423368001568 SNSL254_A1400 Salmonella enterica subsp. enterica serovar Newport str. SL254 aldose 1-epimerase YP_002040546.1 1369444 R 423368 CDS YP_002040547.1 194446706 complement(1370663..1371658) 1 NC_011080.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase 1371658 gapA 423368001569 gapA Salmonella enterica subsp. enterica serovar Newport str. SL254 glyceraldehyde-3-phosphate dehydrogenase YP_002040547.1 1370663 R 423368 CDS YP_002040548.1 194445969 1372000..1372413 1 NC_011080.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1372413 msrB 423368001570 msrB Salmonella enterica subsp. enterica serovar Newport str. SL254 methionine sulfoxide reductase B YP_002040548.1 1372000 D 423368 CDS YP_002040549.1 194445331 1372455..1372733 1 NC_011080.1 identified by match to protein family HMM PF07023; general negative regulator of transcription subunit 1 1372733 423368001571 SNSL254_A1403 Salmonella enterica subsp. enterica serovar Newport str. SL254 general negative regulator of transcription subunit 1 YP_002040549.1 1372455 D 423368 CDS YP_002040550.1 194444663 complement(1373085..1373741) 1 NC_011080.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase 1373741 423368001572 SNSL254_A1404 Salmonella enterica subsp. enterica serovar Newport str. SL254 nicotinamidase/pyrazinamidase YP_002040550.1 1373085 R 423368 CDS YP_002040551.2 448967520 complement(1373768..1374784) 1 NC_011080.1 converts asparagine to aspartate and ammonia; asparaginase 1374784 ansA 423368001573 ansA Salmonella enterica subsp. enterica serovar Newport str. SL254 asparaginase YP_002040551.2 1373768 R 423368 CDS YP_002040552.1 194443380 complement(1374880..1376736) 1 NC_011080.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 1376736 sppA 423368001574 sppA Salmonella enterica subsp. enterica serovar Newport str. SL254 protease 4 YP_002040552.1 1374880 R 423368 CDS YP_002040553.1 194443807 1376910..1377461 1 NC_011080.1 identified by match to protein family HMM PF00881; hypothetical protein 1377461 423368001575 SNSL254_A1407 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040553.1 1376910 D 423368 CDS YP_002040554.1 194443152 1377579..1378622 1 NC_011080.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1378622 selD 423368001576 selD Salmonella enterica subsp. enterica serovar Newport str. SL254 selenophosphate synthetase YP_002040554.1 1377579 D 423368 CDS YP_002040555.1 194442516 1378627..1380576 1 NC_011080.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1380576 topB 423368001577 topB Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA topoisomerase III YP_002040555.1 1378627 D 423368 CDS YP_002040556.1 194443980 complement(1380606..1381949) 1 NC_011080.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1381949 gdhA 423368001578 gdhA Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate dehydrogenase YP_002040556.1 1380606 R 423368 CDS YP_002040557.1 194443135 1382188..1382463 1 NC_011080.1 identified by match to protein family HMM PF07383; hypothetical protein 1382463 423368001579 SNSL254_A1411 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040557.1 1382188 D 423368 CDS YP_002040558.1 194442750 complement(1382423..1382839) 1 NC_011080.1 identified by match to protein family HMM PF00293; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1382839 423368001580 SNSL254_A1412 Salmonella enterica subsp. enterica serovar Newport str. SL254 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_002040558.1 1382423 R 423368 CDS YP_002040559.1 194446222 complement(1382912..1383718) 1 NC_011080.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1383718 xth 423368001581 xth Salmonella enterica subsp. enterica serovar Newport str. SL254 exonuclease III YP_002040559.1 1382912 R 423368 CDS YP_002040560.1 194445833 1383853..1384032 1 NC_011080.1 hypothetical protein 1384032 423368001582 SNSL254_A1414 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040560.1 1383853 D 423368 CDS YP_002040561.1 194444888 1384164..1385390 1 NC_011080.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1385390 423368001583 SNSL254_A1415 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional succinylornithine transaminase/acetylornithine transaminase YP_002040561.1 1384164 D 423368 CDS YP_002040562.1 194444625 1385381..1386415 1 NC_011080.1 identified by match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244; arginine succinyltransferase 1386415 astA 423368001584 astA Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine succinyltransferase YP_002040562.1 1385381 D 423368 CDS YP_002040563.1 194445282 1386412..1387890 1 NC_011080.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1387890 astD 423368001585 astD Salmonella enterica subsp. enterica serovar Newport str. SL254 succinylglutamic semialdehyde dehydrogenase YP_002040563.1 1386412 D 423368 CDS YP_002040564.1 194443810 1387887..1389230 1 NC_011080.1 'catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation'; succinylarginine dihydrolase 1389230 astB 423368001586 astB Salmonella enterica subsp. enterica serovar Newport str. SL254 succinylarginine dihydrolase YP_002040564.1 1387887 D 423368 CDS YP_002040565.1 194444440 1389223..1390191 1 NC_011080.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1390191 astE 423368001587 astE Salmonella enterica subsp. enterica serovar Newport str. SL254 succinylglutamate desuccinylase YP_002040565.1 1389223 D 423368 CDS YP_002040566.1 194445452 1390330..1390443 1 NC_011080.1 identified by glimmer; hypothetical protein 1390443 423368001588 SNSL254_A1420 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040566.1 1390330 D 423368 CDS YP_002040567.1 194443644 1390527..1391012 1 NC_011080.1 periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1391012 spy 423368001589 spy Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040567.1 1390527 D 423368 CDS YP_002040568.1 194443792 complement(1391087..1391968) 1 NC_011080.1 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease 1391968 423368001590 SNSL254_A1422 Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleotide excision repair endonuclease YP_002040568.1 1391087 R 423368 CDS YP_002040569.1 194444327 complement(1392089..1392916) 1 NC_011080.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1392916 nadE 423368001591 nadE Salmonella enterica subsp. enterica serovar Newport str. SL254 NAD synthetase YP_002040569.1 1392089 R 423368 CDS YP_002040570.1 194442799 1392869..1393003 1 NC_011080.1 identified by glimmer; hypothetical protein 1393003 423368001592 SNSL254_A1423 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040570.1 1392869 D 423368 CDS YP_002040571.1 194443302 1393135..1393476 1 NC_011080.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1393476 osmE 423368001593 osmE Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator OsmE YP_002040571.1 1393135 D 423368 CDS YP_002040572.1 194445760 1393777..1394097 1 NC_011080.1 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1394097 chbB 423368001594 chbB Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB YP_002040572.1 1393777 D 423368 CDS YP_002040573.1 194446245 1394180..1395538 1 NC_011080.1 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1395538 chbC 423368001595 chbC Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC YP_002040573.1 1394180 D 423368 CDS YP_002040574.1 194444735 1395589..1395936 1 NC_011080.1 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1395936 423368001596 SNSL254_A1428 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA YP_002040574.1 1395589 D 423368 CDS YP_002040575.1 194445223 1395947..1396789 1 NC_011080.1 represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1396789 423368001597 SNSL254_A1429 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator ChbR YP_002040575.1 1395947 D 423368 CDS YP_002040576.1 194445776 1396914..1398269 1 NC_011080.1 identified by match to protein family HMM PF02056; 6-phospho-beta-glucosidase 1398269 423368001598 SNSL254_A1430 Salmonella enterica subsp. enterica serovar Newport str. SL254 6-phospho-beta-glucosidase YP_002040576.1 1396914 D 423368 CDS YP_002040577.1 194445124 1398282..1399040 1 NC_011080.1 identified by match to protein family HMM PF04794; hypothetical protein 1399040 423368001599 SNSL254_A1431 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040577.1 1398282 D 423368 CDS YP_002040578.1 194444803 complement(1399084..1401336) 1 NC_011080.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 1401336 katE 423368001600 katE Salmonella enterica subsp. enterica serovar Newport str. SL254 hydroperoxidase II YP_002040578.1 1399084 R 423368 CDS YP_002040579.1 194444436 1401701..1401943 1 NC_011080.1 cell division modulator 1401943 423368001601 SNSL254_A1433 Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division modulator YP_002040579.1 1401701 D 423368 CDS YP_002040580.1 194444105 complement(1402045..1403436) 1 NC_011080.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family 1403436 423368001602 SNSL254_A1434 Salmonella enterica subsp. enterica serovar Newport str. SL254 sodium:dicarboxylate symporter family YP_002040580.1 1402045 R 423368 CDS YP_002040581.1 194443166 complement(1403573..1404172) 1 NC_011080.1 identified by match to protein family HMM PF04307; hypothetical protein 1404172 423368001603 SNSL254_A1435 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040581.1 1403573 R 423368 CDS YP_002040582.1 194442872 complement(1404310..1404978) 1 NC_011080.1 'YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate'; 2-deoxyglucose-6-phosphatase 1404978 423368001604 SNSL254_A1436 Salmonella enterica subsp. enterica serovar Newport str. SL254 2-deoxyglucose-6-phosphatase YP_002040582.1 1404310 R 423368 CDS YP_002040583.1 194442480 1405127..1405663 1 NC_011080.1 hypothetical protein 1405663 423368001605 SNSL254_A1437 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040583.1 1405127 D 423368 CDS YP_002040584.1 194446770 complement(1405706..1406566) 1 NC_011080.1 identified by match to protein family HMM PF01636; match to protein family HMM PF03881; fructosamine kinase 1406566 423368001606 SNSL254_A1438 Salmonella enterica subsp. enterica serovar Newport str. SL254 fructosamine kinase YP_002040584.1 1405706 R 423368 CDS YP_002040585.1 194446104 complement(1406673..1406963) 1 NC_011080.1 hypothetical protein 1406963 423368001607 SNSL254_A1439 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040585.1 1406673 R 423368 CDS YP_002040586.1 194443434 complement(1407060..1407992) 1 NC_011080.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 6-phosphofructokinase 1407992 pfkB 423368001608 pfkB Salmonella enterica subsp. enterica serovar Newport str. SL254 6-phosphofructokinase YP_002040586.1 1407060 R 423368 CDS YP_002040587.1 194445041 1408314..1409039 1 NC_011080.1 identified by match to protein family HMM PF04338; hypothetical protein 1409039 423368001609 SNSL254_A1441 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040587.1 1408314 D 423368 CDS YP_002040588.1 194445563 complement(1409088..1410047) 1 NC_011080.1 hypothetical protein 1410047 423368001610 SNSL254_A1442 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040588.1 1409088 R 423368 CDS YP_002040589.1 194443189 1410190..1411356 1 NC_011080.1 identified by match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 1411356 423368001611 SNSL254_A1443 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA/RNA non-specific endonuclease YP_002040589.1 1410190 D 423368 CDS YP_002040590.1 194446059 1411616..1413544 1 NC_011080.1 'catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; threonyl-tRNA synthetase 1413544 thrS 423368001612 thrS Salmonella enterica subsp. enterica serovar Newport str. SL254 threonyl-tRNA synthetase YP_002040590.1 1411616 D 423368 CDS YP_002040591.1 194444222 1413656..1414090 1 NC_011080.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1414090 infC 423368001613 infC Salmonella enterica subsp. enterica serovar Newport str. SL254 translation initiation factor IF-3 YP_002040591.1 1413656 D 423368 CDS YP_002040592.1 194442458 1414186..1414383 1 NC_011080.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1414383 rpmI 423368001614 rpmI Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L35 YP_002040592.1 1414186 D 423368 CDS YP_002040593.1 194444710 1414434..1414790 1 NC_011080.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1414790 rplT 423368001615 rplT Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L20 YP_002040593.1 1414434 D 423368 CDS YP_002040594.1 194445218 1415092..1416075 1 NC_011080.1 'catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily'; phenylalanyl-tRNA synthetase subunit alpha 1416075 pheS 423368001616 pheS Salmonella enterica subsp. enterica serovar Newport str. SL254 phenylalanyl-tRNA synthetase subunit alpha YP_002040594.1 1415092 D 423368 CDS YP_002040595.1 194445753 1416091..1418478 1 NC_011080.1 'catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily'; phenylalanyl-tRNA synthetase subunit beta 1418478 pheT 423368001617 pheT Salmonella enterica subsp. enterica serovar Newport str. SL254 phenylalanyl-tRNA synthetase subunit beta YP_002040595.1 1416091 D 423368 CDS YP_002040596.1 194443596 1418483..1418782 1 NC_011080.1 'This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control'; integration host factor subunit alpha 1418782 ihfA 423368001618 ihfA Salmonella enterica subsp. enterica serovar Newport str. SL254 integration host factor subunit alpha YP_002040596.1 1418483 D 423368 CDS YP_002040597.1 194444270 1418985..1419965 1 NC_011080.1 with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1419965 423368001619 SNSL254_A1451 Salmonella enterica subsp. enterica serovar Newport str. SL254 vtamin B12-transporter permease YP_002040597.1 1418985 D 423368 CDS YP_002040598.1 194442588 1420057..1420608 1 NC_011080.1 similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; glutathione peroxidase 1420608 btuE 423368001620 btuE Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione peroxidase YP_002040598.1 1420057 D 423368 CDS YP_002040599.1 194446043 1420620..1421357 1 NC_011080.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1421357 423368001621 SNSL254_A1453 Salmonella enterica subsp. enterica serovar Newport str. SL254 vitamin B12-transporter ATPase YP_002040599.1 1420620 D 423368 CDS YP_002040600.1 194446694 1421434..1421898 1 NC_011080.1 identified by match to protein family HMM PF00877; lipoprotein nlpC 1421898 423368001622 SNSL254_A1454 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein nlpC YP_002040600.1 1421434 D 423368 CDS YP_002040601.1 194445043 1422212..1422925 1 NC_011080.1 hypothetical protein 1422925 423368001623 SNSL254_A1455 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040601.1 1422212 D 423368 CDS YP_002040602.1 194444535 1422987..1424429 1 NC_011080.1 identified by match to protein family HMM PF02696; hypothetical protein 1424429 423368001624 SNSL254_A1456 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040602.1 1422987 D 423368 CDS YP_002040603.1 194443404 complement(1424465..1424647) 1 NC_011080.1 hypothetical protein 1424647 423368001625 SNSL254_A1457 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040603.1 1424465 R 423368 CDS YP_002040604.1 194444464 complement(1424813..1425859) 1 NC_011080.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1425859 aroH 423368001626 aroH Salmonella enterica subsp. enterica serovar Newport str. SL254 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002040604.1 1424813 R 423368 CDS YP_002040605.1 194442649 complement(1426015..1426848) 1 NC_011080.1 identified by match to protein family HMM PF03618; hypothetical protein 1426848 423368001627 SNSL254_A1459 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040605.1 1426015 R 423368 CDS YP_002040606.1 194446608 1427185..1429563 1 NC_011080.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1429563 ppsA 423368001628 ppsA Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoenolpyruvate synthase YP_002040606.1 1427185 D 423368 CDS YP_002040607.1 194445806 complement(1429605..1431245) 1 NC_011080.1 acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase 1431245 423368001629 SNSL254_A1462 Salmonella enterica subsp. enterica serovar Newport str. SL254 short chain acyl-CoA synthetase YP_002040607.1 1429605 R 423368 CDS YP_002040608.1 194443266 complement(1431335..1431628) 1 NC_011080.1 ferredoxin-like protein 1431628 423368001630 SNSL254_A1463 Salmonella enterica subsp. enterica serovar Newport str. SL254 ferredoxin-like protein YP_002040608.1 1431335 R 423368 CDS YP_002040609.1 194442631 complement(1431625..1432911) 1 NC_011080.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; hypothetical protein 1432911 423368001631 SNSL254_A1464 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040609.1 1431625 R 423368 CDS YP_002040610.1 194445198 complement(1432968..1433903) 1 NC_011080.1 May play a role in a redox process; electron transfer flavoprotein subunit YdiR 1433903 423368001632 SNSL254_A1465 Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transfer flavoprotein subunit YdiR YP_002040610.1 1432968 R 423368 CDS YP_002040611.1 194444566 complement(1433925..1434689) 1 NC_011080.1 'YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain'; electron transfer flavoprotein YdiQ 1434689 ydiQ 423368001633 ydiQ Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transfer flavoprotein YdiQ YP_002040611.1 1433925 R 423368 CDS YP_002040612.1 194446454 1435152..1436042 1 NC_011080.1 identified by match to protein family HMM PF00165; match to protein family HMM PF07883; araC family transcriptional regulator 1436042 423368001634 SNSL254_A1467 Salmonella enterica subsp. enterica serovar Newport str. SL254 araC family transcriptional regulator YP_002040612.1 1435152 D 423368 CDS YP_002040613.1 194445957 complement(1436118..1437269) 1 NC_011080.1 may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase 1437269 423368001635 SNSL254_A1468 Salmonella enterica subsp. enterica serovar Newport str. SL254 acyl-CoA dehydrogenase YP_002040613.1 1436118 R 423368 CDS YP_002040614.1 194442461 complement(1437283..1438878) 1 NC_011080.1 identified by match to protein family HMM PF01144; propionate CoA-transferase 1438878 423368001636 SNSL254_A1469 Salmonella enterica subsp. enterica serovar Newport str. SL254 propionate CoA-transferase YP_002040614.1 1437283 R 423368 CDS YP_002040615.1 194442400 complement(1439032..1439763) 1 NC_011080.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 1439763 aroD 423368001637 aroD Salmonella enterica subsp. enterica serovar Newport str. SL254 3-dehydroquinate dehydratase YP_002040615.1 1439032 R 423368 CDS YP_002040616.1 194445061 complement(1439835..1440701) 1 NC_011080.1 YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase 1440701 423368001638 SNSL254_A1471 Salmonella enterica subsp. enterica serovar Newport str. SL254 quinate/shikimate dehydrogenase YP_002040616.1 1439835 R 423368 CDS YP_002040617.1 194445599 complement(1440768..1442003) 1 NC_011080.1 identified by match to protein family HMM PF07690; major facilitator family protein 1442003 423368001639 SNSL254_A1472 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator family protein YP_002040617.1 1440768 R 423368 CDS YP_002040618.1 194444927 complement(1442370..1443578) 1 NC_011080.1 identified by match to protein family HMM PF07690; inner membrane transport protein YdiM 1443578 423368001640 SNSL254_A1473 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport protein YdiM YP_002040618.1 1442370 R 423368 CDS YP_002040619.1 194445638 complement(1443719..1444078) 1 NC_011080.1 identified by match to protein family HMM PF08965; hypothetical protein 1444078 423368001641 SNSL254_A1474 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040619.1 1443719 R 423368 CDS YP_002040620.1 194443331 complement(1444536..1445654) 1 NC_011080.1 'YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function'; inner membrane protein 1445654 423368001643 SNSL254_A1476 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane protein YP_002040620.1 1444536 R 423368 CDS YP_002040621.1 194444383 1445919..1448975 1 NC_011080.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; FAD linked oxidase domain-containing protein 1448975 423368001644 SNSL254_A1477 Salmonella enterica subsp. enterica serovar Newport str. SL254 FAD linked oxidase domain-containing protein YP_002040621.1 1445919 D 423368 CDS YP_002040622.1 194446601 1448972..1449382 1 NC_011080.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 1449382 423368001645 SNSL254_A1478 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040622.1 1448972 D 423368 CDS YP_002040623.1 194445853 complement(1449957..1451303) 1 NC_011080.1 identified by match to protein family HMM PF00375; dicarboxylate/amino acid:cation (Na+ or H+) symporter family transporter 1451303 423368001647 SNSL254_A1481 Salmonella enterica subsp. enterica serovar Newport str. SL254 dicarboxylate/amino acid:cation (Na+ or H+) symporter family transporter YP_002040623.1 1449957 R 423368 CDS YP_002040624.1 194444355 1451730..1452098 1 NC_011080.1 functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1452098 sufA 423368001648 sufA Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-sulfur cluster assembly scaffold protein YP_002040624.1 1451730 D 423368 CDS YP_002040625.1 194446209 1452107..1453594 1 NC_011080.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1453594 sufB 423368001649 sufB Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine desulfurase activator complex subunit SufB YP_002040625.1 1452107 D 423368 CDS YP_002040626.1 194445473 1453611..1454357 1 NC_011080.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1454357 sufC 423368001650 sufC Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine desulfurase YP_002040626.1 1453611 D 423368 CDS YP_002040627.1 194442942 1454332..1455603 1 NC_011080.1 with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1455603 sufD 423368001651 sufD Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine desulfurase activator complex subunit SufD YP_002040627.1 1454332 D 423368 CDS YP_002040628.1 194442460 1455600..1456820 1 NC_011080.1 catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1456820 423368001652 SNSL254_A1486 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional cysteine desulfurase/selenocysteine lyase YP_002040628.1 1455600 D 423368 CDS YP_002040629.1 194443011 1456833..1457249 1 NC_011080.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1457249 423368001653 SNSL254_A1487 Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine desufuration protein SufE YP_002040629.1 1456833 D 423368 CDS YP_002040630.1 194442385 1457404..1458405 1 NC_011080.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1458405 423368001654 SNSL254_A1488 Salmonella enterica subsp. enterica serovar Newport str. SL254 ErfK/YbiS/YcfS/YnhG family protein YP_002040630.1 1457404 D 423368 CDS YP_002040631.1 194444003 complement(1458472..1458711) 1 NC_011080.1 identified by match to protein family HMM PF04728; hypothetical protein 1458711 423368001655 SNSL254_A1489 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040631.1 1458472 R 423368 CDS YP_002040632.1 194443354 complement(1458794..1459030) 1 NC_011080.1 identified by match to protein family HMM PF04728; major outer membrane lipoprotein 1459030 lpp 423368001656 lpp Salmonella enterica subsp. enterica serovar Newport str. SL254 major outer membrane lipoprotein YP_002040632.1 1458794 R 423368 CDS YP_002040633.1 194445372 complement(1459341..1460753) 1 NC_011080.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1460753 pykF 423368001657 pykF Salmonella enterica subsp. enterica serovar Newport str. SL254 pyruvate kinase YP_002040633.1 1459341 R 423368 CDS YP_002040634.1 194446814 complement(1461155..1462498) 1 NC_011080.1 identified by match to protein family HMM PF00324; amino acid transporter 1462498 423368001658 SNSL254_A1492 Salmonella enterica subsp. enterica serovar Newport str. SL254 amino acid transporter YP_002040634.1 1461155 R 423368 CDS YP_008083623.1 513538100 complement(1462520..1463413) 1 NC_011080.1 hydrolase 1463413 423368001659 SNSL254_A1493 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrolase YP_008083623.1 1462520 R 423368 CDS YP_002040635.1 194442290 complement(1463472..1464209) 1 NC_011080.1 identified by match to protein family HMM PF07090; hypothetical protein 1464209 423368001660 SNSL254_A1494 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040635.1 1463472 R 423368 CDS YP_002040636.1 194445121 complement(1464221..1465447) 1 NC_011080.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; regulatory protein 1465447 423368001661 SNSL254_A1495 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein YP_002040636.1 1464221 R 423368 CDS YP_002040637.1 194443327 complement(1465770..1468832) 1 NC_011080.1 identified by match to protein family HMM PF01568; match to protein family HMM PF04879; tetrathionate reductase complex subunit A 1468832 423368001662 SNSL254_A1496 Salmonella enterica subsp. enterica serovar Newport str. SL254 tetrathionate reductase complex subunit A YP_002040637.1 1465770 R 423368 CDS YP_002040638.1 194446158 complement(1468825..1469847) 1 NC_011080.1 identified by match to protein family HMM PF03916; tetrathionate reductase complex subunit C 1469847 423368001663 SNSL254_A1497 Salmonella enterica subsp. enterica serovar Newport str. SL254 tetrathionate reductase complex subunit C YP_002040638.1 1468825 R 423368 CDS YP_002040639.1 194445522 complement(1469848..1470582) 1 NC_011080.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; tetrathionate reductase subunit B 1470582 423368001664 SNSL254_A1498 Salmonella enterica subsp. enterica serovar Newport str. SL254 tetrathionate reductase subunit B YP_002040639.1 1469848 R 423368 CDS YP_002040640.1 194442537 1470794..1472542 1 NC_011080.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor-kinase 1472542 423368001665 SNSL254_A1499 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor-kinase YP_002040640.1 1470794 D 423368 CDS YP_002040641.1 194446476 1472499..1473137 1 NC_011080.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; response regulator 1473137 423368001666 SNSL254_A1500 Salmonella enterica subsp. enterica serovar Newport str. SL254 response regulator YP_002040641.1 1472499 D 423368 CDS YP_002040642.1 194443485 1473235..1473447 1 NC_011080.1 hypothetical protein 1473447 423368001667 SNSL254_A1501 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040642.1 1473235 D 423368 CDS YP_002040643.1 194446666 complement(1473569..1474528) 1 NC_011080.1 identified by match to protein family HMM PF04463; match to protein family HMM PF08349; hypothetical protein 1474528 423368001668 SNSL254_A1502 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040643.1 1473569 R 423368 CDS YP_002040644.1 194445173 complement(1474701..1475429) 1 NC_011080.1 identified by match to protein family HMM PF00376; merR family transcriptional regulator 1475429 423368001669 SNSL254_A1503 Salmonella enterica subsp. enterica serovar Newport str. SL254 merR family transcriptional regulator YP_002040644.1 1474701 R 423368 CDS YP_002040645.1 194445553 complement(1475608..1476246) 1 NC_011080.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; hypothetical protein 1476246 423368001670 SNSL254_A1504 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040645.1 1475608 R 423368 CDS YP_002040646.1 194443927 complement(1476277..1479039) 1 NC_011080.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; secretion system regulator:Sensor component 1479039 423368001671 SNSL254_A1505 Salmonella enterica subsp. enterica serovar Newport str. SL254 secretion system regulator:Sensor component YP_002040646.1 1476277 R 423368 CDS YP_002040647.1 194442462 1479843..1481336 1 NC_011080.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; type III secretion outer membrane pore, YscC/HrcC family 1481336 423368001672 SNSL254_A1506 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion outer membrane pore, YscC/HrcC family YP_002040647.1 1479843 D 423368 CDS YP_002040648.1 194443037 1481329..1482528 1 NC_011080.1 identified by match to protein family HMM TIGR02500; type III secretion apparatus protein YscD/HrpQ family 1482528 423368001673 SNSL254_A1507 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion apparatus protein YscD/HrpQ family YP_002040648.1 1481329 D 423368 CDS YP_002040649.1 194445963 1482545..1482778 1 NC_011080.1 identified by match to protein family HMM TIGR02501; YseE family type III secretion system protein 1482778 423368001674 SNSL254_A1508 Salmonella enterica subsp. enterica serovar Newport str. SL254 YseE family type III secretion system protein YP_002040649.1 1482545 D 423368 CDS YP_002040650.1 194446641 1483374..1483964 1 NC_011080.1 identified by match to protein family HMM PF03433; secretion system effector protein SseB 1483964 423368001675 SNSL254_A1509 Salmonella enterica subsp. enterica serovar Newport str. SL254 secretion system effector protein SseB YP_002040650.1 1483374 D 423368 CDS YP_002040651.1 194444946 1483919..1484434 1 NC_011080.1 identified by match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1484434 423368001676 SNSL254_A1510 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion low calcium response chaperone LcrH/SycD YP_002040651.1 1483919 D 423368 CDS YP_002040652.1 194445614 1484437..1485891 1 NC_011080.1 identified by match to protein family HMM PF04888; translocation machinery component 1485891 423368001677 SNSL254_A1511 Salmonella enterica subsp. enterica serovar Newport str. SL254 translocation machinery component YP_002040652.1 1484437 D 423368 CDS YP_002040653.2 448967521 1485907..1486494 1 NC_011080.1 translocation machinery protein 1486494 423368001678 SNSL254_A1512 Salmonella enterica subsp. enterica serovar Newport str. SL254 translocation machinery protein YP_002040653.2 1485907 D 423368 CDS YP_002040654.1 194443258 1486497..1486913 1 NC_011080.1 secreted effector protein 1486913 423368001679 SNSL254_A1513 Salmonella enterica subsp. enterica serovar Newport str. SL254 secreted effector protein YP_002040654.1 1486497 D 423368 CDS YP_002040655.1 194446046 1486965..1487399 1 NC_011080.1 identified by match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1487399 423368001680 SNSL254_A1514 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion low calcium response chaperone LcrH/SycD YP_002040655.1 1486965 D 423368 CDS YP_002040656.1 194444162 1487415..1488197 1 NC_011080.1 secreted effector protein 1488197 423368001681 SNSL254_A1515 Salmonella enterica subsp. enterica serovar Newport str. SL254 secreted effector protein YP_002040656.1 1487415 D 423368 CDS YP_002040657.1 194442261 1488194..1488883 1 NC_011080.1 secreted effector protein 1488883 423368001682 SNSL254_A1516 Salmonella enterica subsp. enterica serovar Newport str. SL254 secreted effector protein YP_002040657.1 1488194 D 423368 CDS YP_002040658.1 194444859 1488977..1489192 1 NC_011080.1 identified by match to protein family HMM PF09392; match to protein family HMM TIGR02105; type III secretion apparatus needle protein 1489192 eprI 423368001683 eprI Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion apparatus needle protein YP_002040658.1 1488977 D 423368 CDS YP_002040659.1 194443522 1489170..1489460 1 NC_011080.1 identified by match to protein family HMM TIGR02498; SsaH family type III secretion system protein 1489460 423368001684 SNSL254_A1518 Salmonella enterica subsp. enterica serovar Newport str. SL254 SsaH family type III secretion system protein YP_002040659.1 1489170 D 423368 CDS YP_002040660.1 194446004 1489457..1489720 1 NC_011080.1 identified by match to protein family HMM PF09525; match to protein family HMM TIGR02497; type III secretion system apparatus protein 1489720 423368001685 SNSL254_A1519 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion system apparatus protein YP_002040660.1 1489457 D 423368 CDS YP_002040661.1 194446558 1489717..1490466 1 NC_011080.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein YscJ/HrcJ family 1490466 423368001686 SNSL254_A1520 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion apparatus lipoprotein YscJ/HrcJ family YP_002040661.1 1489717 D 423368 CDS YP_002040662.1 194442443 1490484..1491032 1 NC_011080.1 hypothetical protein 1491032 423368001687 SNSL254_A1521 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040662.1 1490484 D 423368 CDS YP_002040663.1 194444655 1491029..1491703 1 NC_011080.1 identified by match to protein family HMM TIGR02499; type III secretion apparatus protein HrpE/YscL family 1491703 423368001688 SNSL254_A1522 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion apparatus protein HrpE/YscL family YP_002040663.1 1491029 D 423368 CDS YP_002040664.1 194442336 1491693..1492685 1 NC_011080.1 identified by match to protein family HMM PF07018; match to protein family HMM TIGR02511; secretion system apparatus protein SsaL 1492685 423368001689 SNSL254_A1523 Salmonella enterica subsp. enterica serovar Newport str. SL254 secretion system apparatus protein SsaL YP_002040664.1 1491693 D 423368 CDS YP_002040665.1 194446457 1492743..1493111 1 NC_011080.1 secretion system apparatus protein SsaM 1493111 423368001690 SNSL254_A1524 Salmonella enterica subsp. enterica serovar Newport str. SL254 secretion system apparatus protein SsaM YP_002040665.1 1492743 D 423368 CDS YP_002040666.1 194443800 1493096..1495141 1 NC_011080.1 with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1495141 423368001691 SNSL254_A1525 Salmonella enterica subsp. enterica serovar Newport str. SL254 secretion system apparatus protein SsaV YP_002040666.1 1493096 D 423368 CDS YP_002040667.1 194442812 1495131..1496432 1 NC_011080.1 identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546; type III secretion system ATPase 1496432 423368001692 SNSL254_A1526 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion system ATPase YP_002040667.1 1495131 D 423368 CDS YP_002040668.1 194445454 1496435..1496812 1 NC_011080.1 secretion system apparatus protein SsaO 1496812 423368001693 SNSL254_A1527 Salmonella enterica subsp. enterica serovar Newport str. SL254 secretion system apparatus protein SsaO YP_002040668.1 1496435 D 423368 CDS YP_002040669.1 194444984 1496826..1497167 1 NC_011080.1 secretion system apparatus protein SsaP 1497167 423368001694 SNSL254_A1528 Salmonella enterica subsp. enterica serovar Newport str. SL254 secretion system apparatus protein SsaP YP_002040669.1 1496826 D 423368 CDS YP_002040670.1 194445909 1497148..1498116 1 NC_011080.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551; type III secretion system protein 1498116 epaO 423368001695 epaO Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion system protein YP_002040670.1 1497148 D 423368 CDS YP_002040671.1 194445968 1498184..1498831 1 NC_011080.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1498831 epaP 423368001696 epaP Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion system protein YP_002040671.1 1498184 D 423368 CDS YP_002040672.1 194442971 1499095..1499874 1 NC_011080.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT 1499874 epaR 423368001697 epaR Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion apparatus protein SpaR/YscT/HrcT YP_002040672.1 1499095 D 423368 CDS YP_002040673.1 194445677 1499871..1500929 1 NC_011080.1 'member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli'; secretion system apparatus protein SsaU 1500929 423368001698 SNSL254_A1532 Salmonella enterica subsp. enterica serovar Newport str. SL254 secretion system apparatus protein SsaU YP_002040673.1 1499871 D 423368 CDS YP_002040674.1 194446502 complement(1501402..1502775) 1 NC_011080.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1502775 423368001701 SNSL254_A1535 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug efflux protein YP_002040674.1 1501402 R 423368 CDS YP_002040675.1 194446365 1502992..1503633 1 NC_011080.1 'catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine'; riboflavin synthase subunit alpha 1503633 ribE 423368001702 ribE Salmonella enterica subsp. enterica serovar Newport str. SL254 riboflavin synthase subunit alpha YP_002040675.1 1502992 D 423368 CDS YP_002040676.1 194442318 complement(1503675..1504823) 1 NC_011080.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 1504823 cfa 423368001703 cfa Salmonella enterica subsp. enterica serovar Newport str. SL254 cyclopropane-fatty-acyl-phospholipid synthase YP_002040676.1 1503675 R 423368 CDS YP_002040677.1 194443109 complement(1505113..1506318) 1 NC_011080.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 1506318 423368001704 SNSL254_A1538 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport protein YdhC YP_002040677.1 1505113 R 423368 CDS YP_002040678.1 194443764 1506431..1507363 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 1507363 423368001705 SNSL254_A1539 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator YP_002040678.1 1506431 D 423368 CDS YP_002040679.1 194443895 complement(1507360..1508385) 1 NC_011080.1 'binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers'; DNA-binding transcriptional repressor PurR 1508385 purR 423368001706 purR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional repressor PurR YP_002040679.1 1507360 R 423368 CDS YP_002040680.1 194444247 complement(1508853..1509434) 1 NC_011080.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase 1509434 423368001707 SNSL254_A1541 Salmonella enterica subsp. enterica serovar Newport str. SL254 superoxide dismutase YP_002040680.1 1508853 R 423368 CDS YP_002040681.1 194445119 complement(1509561..1510382) 1 NC_011080.1 identified by match to protein family HMM PF00877; NlpC/P60 family protein 1510382 423368001708 SNSL254_A1542 Salmonella enterica subsp. enterica serovar Newport str. SL254 NlpC/P60 family protein YP_002040681.1 1509561 R 423368 CDS YP_002040682.1 194445820 1510717..1511064 1 NC_011080.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; hypothetical protein 1511064 423368001709 SNSL254_A1543 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040682.1 1510717 D 423368 CDS YP_002040683.1 194445493 complement(1511142..1511789) 1 NC_011080.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1511789 rnt 423368001710 rnt Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease T YP_002040683.1 1511142 R 423368 CDS YP_002040684.1 194446138 complement(1511890..1512297) 1 NC_011080.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I 1512297 gloA 423368001711 gloA Salmonella enterica subsp. enterica serovar Newport str. SL254 glyoxalase I YP_002040684.1 1511890 R 423368 CDS YP_002040685.1 194444937 complement(1512366..1513463) 1 NC_011080.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 1513463 423368001712 SNSL254_A1546 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-ethylmaleimide reductase YP_002040685.1 1512366 R 423368 CDS YP_002040686.1 194445590 complement(1513522..1514121) 1 NC_011080.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1514121 423368001713 SNSL254_A1547 Salmonella enterica subsp. enterica serovar Newport str. SL254 TetR family transcriptional regulator YP_002040686.1 1513522 R 423368 CDS YP_002040687.1 194443392 1514311..1514463 1 NC_011080.1 hypothetical protein 1514463 423368001714 SNSL254_A1548 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040687.1 1514311 D 423368 CDS YP_002040688.1 194444046 1514514..1515410 1 NC_011080.1 identified by match to protein family HMM PF00248; oxidoreductase YdhF 1515410 423368001715 SNSL254_A1549 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase YdhF YP_002040688.1 1514514 D 423368 CDS YP_002040689.1 194446594 1515490..1516011 1 NC_011080.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1516011 sodC 423368001716 sodC Salmonella enterica subsp. enterica serovar Newport str. SL254 superoxide dismutase YP_002040689.1 1515490 D 423368 CDS YP_002040690.1 194446531 complement(1515987..1518026) 1 NC_011080.1 identified by match to protein family HMM PF04632; fusaric acid resistance domain-containing protein 1518026 423368001717 SNSL254_A1551 Salmonella enterica subsp. enterica serovar Newport str. SL254 fusaric acid resistance domain-containing protein YP_002040690.1 1515987 R 423368 CDS YP_002040691.1 194445002 complement(1518026..1518886) 1 NC_011080.1 identified by match to protein family HMM PF00529; auxiliary transport protein membrane fusion protein (MFP) family 1518886 423368001718 SNSL254_A1552 Salmonella enterica subsp. enterica serovar Newport str. SL254 auxiliary transport protein membrane fusion protein (MFP) family YP_002040691.1 1518026 R 423368 CDS YP_002040692.1 194445626 complement(1518889..1519080) 1 NC_011080.1 identified by match to protein family HMM PF07869; hypothetical protein 1519080 423368001719 SNSL254_A1553 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040692.1 1518889 R 423368 CDS YP_002040693.1 194445848 1519320..1519760 1 NC_011080.1 Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1519760 423368001720 SNSL254_A1554 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator SlyA YP_002040693.1 1519320 D 423368 CDS YP_002040694.1 194446523 complement(1519808..1520275) 1 NC_011080.1 identified by match to protein family HMM PF05433; outer membrane lipoprotein pcp 1520275 423368001721 SNSL254_A1555 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein pcp YP_002040694.1 1519808 R 423368 CDS YP_002040695.1 194445855 1520547..1521668 1 NC_011080.1 'catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling'; anhydro-N-acetylmuramic acid kinase 1521668 anmK 423368001722 anmK Salmonella enterica subsp. enterica serovar Newport str. SL254 anhydro-N-acetylmuramic acid kinase YP_002040695.1 1520547 D 423368 CDS YP_002040696.1 194446515 1521756..1522085 1 NC_011080.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1522085 423368001723 SNSL254_A1557 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysozyme inhibitor YP_002040696.1 1521756 D 423368 CDS YP_002040697.1 194443113 1522144..1522800 1 NC_011080.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1522800 pdxH 423368001724 pdxH Salmonella enterica subsp. enterica serovar Newport str. SL254 pyridoxamine 5'-phosphate oxidase YP_002040697.1 1522144 D 423368 CDS YP_002040698.1 194443795 1522927..1524201 1 NC_011080.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1524201 tyrS 423368001725 tyrS Salmonella enterica subsp. enterica serovar Newport str. SL254 tyrosyl-tRNA synthetase YP_002040698.1 1522927 D 423368 CDS YP_002040699.1 194443934 1524261..1525121 1 NC_011080.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1525121 423368001726 SNSL254_A1560 Salmonella enterica subsp. enterica serovar Newport str. SL254 pyridoxamine kinase YP_002040699.1 1524261 D 423368 CDS YP_002040700.1 194444982 complement(1525180..1525785) 1 NC_011080.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathionine S-transferase 1525785 gst 423368001727 gst Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathionine S-transferase YP_002040700.1 1525180 R 423368 CDS YP_002040701.1 194445255 complement(1525890..1527395) 1 NC_011080.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; tripeptide transporter permease 1527395 tppB 423368001728 tppB Salmonella enterica subsp. enterica serovar Newport str. SL254 tripeptide transporter permease YP_002040701.1 1525890 R 423368 CDS YP_002040702.1 194445755 complement(1527997..1528632) 1 NC_011080.1 'DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines'; endonuclease III 1528632 nth 423368001729 nth Salmonella enterica subsp. enterica serovar Newport str. SL254 endonuclease III YP_002040702.1 1527997 R 423368 CDS YP_002040703.1 194445440 complement(1528632..1529324) 1 NC_011080.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1529324 423368001730 SNSL254_A1564 Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transport complex protein RsxE YP_002040703.1 1528632 R 423368 CDS YP_002040704.1 194444890 complement(1529327..1529947) 1 NC_011080.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 1529947 423368001731 SNSL254_A1565 Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transport complex protein RnfG YP_002040704.1 1529327 R 423368 CDS YP_002040705.1 194444083 complement(1529951..1531009) 1 NC_011080.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 1531009 rnfD 423368001732 rnfD Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transport complex protein RnfD YP_002040705.1 1529951 R 423368 CDS YP_002040706.1 194443713 complement(1531010..1533217) 1 NC_011080.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 1533217 423368001733 SNSL254_A1567 Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transport complex protein RnfC YP_002040706.1 1531010 R 423368 CDS YP_002040707.1 194442230 complement(1533210..1533788) 1 NC_011080.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1533788 rnfB 423368001734 rnfB Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transport complex protein RnfB YP_002040707.1 1533210 R 423368 CDS YP_002040708.1 194442728 complement(1533788..1534369) 1 NC_011080.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943; Na(+)-translocating NADH-quinone reductase subunit E 1534369 rnfA 423368001735 rnfA Salmonella enterica subsp. enterica serovar Newport str. SL254 Na(+)-translocating NADH-quinone reductase subunit E YP_002040708.1 1533788 R 423368 CDS YP_002040709.1 194445863 complement(1534446..1534919) 1 NC_011080.1 hypothetical protein 1534919 423368001736 SNSL254_A1570 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040709.1 1534446 R 423368 CDS YP_002040710.1 194445185 complement(1534975..1535190) 1 NC_011080.1 'YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes'; oriC-binding nucleoid-associated protein 1535190 423368001737 SNSL254_A1571 Salmonella enterica subsp. enterica serovar Newport str. SL254 oriC-binding nucleoid-associated protein YP_002040710.1 1534975 R 423368 CDS YP_002040711.1 194445690 1535821..1536861 1 NC_011080.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase 1536861 423368001738 SNSL254_A1572 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase YP_002040711.1 1535821 D 423368 CDS YP_002040712.1 194442951 complement(1536936..1537937) 1 NC_011080.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1537937 add 423368001739 add Salmonella enterica subsp. enterica serovar Newport str. SL254 adenosine deaminase YP_002040712.1 1536936 R 423368 CDS YP_002040713.1 194446208 complement(1538643..1540151) 1 NC_011080.1 identified by match to protein family HMM PF06097; hypothetical protein 1540151 423368001740 SNSL254_A1575 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040713.1 1538643 R 423368 CDS YP_002040714.1 194444393 complement(1540254..1541429) 1 NC_011080.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 1541429 manA 423368001741 manA Salmonella enterica subsp. enterica serovar Newport str. SL254 mannose-6-phosphate isomerase YP_002040714.1 1540254 R 423368 CDS YP_002040715.1 194443891 1541629..1543275 1 NC_011080.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic 1543275 423368001742 SNSL254_A1577 Salmonella enterica subsp. enterica serovar Newport str. SL254 fumarate hydratase class I, anaerobic YP_002040715.1 1541629 D 423368 CDS YP_002040716.1 194443053 1543443..1544846 1 NC_011080.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1544846 fumC 423368001743 fumC Salmonella enterica subsp. enterica serovar Newport str. SL254 fumarate hydratase YP_002040716.1 1543443 D 423368 CDS YP_002040717.1 194443108 complement(1544843..1545772) 1 NC_011080.1 binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 1545772 tus 423368001744 tus Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA replication terminus site-binding protein YP_002040717.1 1544843 R 423368 CDS YP_002040718.1 194442422 complement(1545848..1547149) 1 NC_011080.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein RstB 1547149 423368001745 SNSL254_A1580 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor protein RstB YP_002040718.1 1545848 R 423368 CDS YP_002040719.1 194446376 complement(1547260..1548960) 1 NC_011080.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family 1548960 423368001746 SNSL254_A1581 Salmonella enterica subsp. enterica serovar Newport str. SL254 amidohydrolase family YP_002040719.1 1547260 R 423368 CDS YP_002040720.1 194445676 complement(1549119..1550270) 1 NC_011080.1 identified by match to protein family HMM PF00267; outer membrane protein N 1550270 423368001747 SNSL254_A1582 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein N YP_002040720.1 1549119 R 423368 CDS YP_002040721.1 194445612 complement(1550535..1550663) 1 NC_011080.1 hypothetical protein 1550663 423368001748 SNSL254_A1583 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040721.1 1550535 R 423368 CDS YP_002040722.1 194442705 complement(1550750..1551481) 1 NC_011080.1 response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA 1551481 423368001749 SNSL254_A1584 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator RstA YP_002040722.1 1550750 R 423368 CDS YP_002040723.1 194446597 1551608..1551943 1 NC_011080.1 identified by match to protein family HMM PF06942; GlpM family protein 1551943 423368001750 SNSL254_A1585 Salmonella enterica subsp. enterica serovar Newport str. SL254 GlpM family protein YP_002040723.1 1551608 D 423368 CDS YP_002040724.1 194446394 complement(1552005..1553387) 1 NC_011080.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/ornithine antiporter 1553387 423368001751 SNSL254_A1586 Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine/ornithine antiporter YP_002040724.1 1552005 R 423368 CDS YP_002040725.1 194445904 complement(1553686..1554630) 1 NC_011080.1 identified by match to protein family HMM PF07338; hypothetical protein 1554630 423368001752 SNSL254_A1587 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040725.1 1553686 R 423368 CDS YP_002040726.1 194444539 1555157..1556686 1 NC_011080.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1556686 pntA 423368001753 pntA Salmonella enterica subsp. enterica serovar Newport str. SL254 NAD(P) transhydrogenase subunit alpha YP_002040726.1 1555157 D 423368 CDS YP_002040727.1 194444194 1556697..1558085 1 NC_011080.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1558085 pntB 423368001754 pntB Salmonella enterica subsp. enterica serovar Newport str. SL254 pyridine nucleotide transhydrogenase YP_002040727.1 1556697 D 423368 CDS YP_002040728.1 194443521 complement(1558260..1559294) 1 NC_011080.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; transporter 1559294 tqsA 423368001755 tqsA Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_002040728.1 1558260 R 423368 CDS YP_002040729.1 194443153 1559463..1559600 1 NC_011080.1 hypothetical protein 1559600 423368001756 SNSL254_A1591 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040729.1 1559463 D 423368 CDS YP_002040730.1 194445916 1559712..1560074 1 NC_011080.1 'with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS'; multidrug efflux system protein MdtJ 1560074 423368001757 SNSL254_A1592 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug efflux system protein MdtJ YP_002040730.1 1559712 D 423368 CDS YP_002040731.1 194445474 1560061..1560390 1 NC_011080.1 'with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS'; multidrug efflux system protein MdtI 1560390 423368001758 SNSL254_A1593 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug efflux system protein MdtI YP_002040731.1 1560061 D 423368 CDS YP_002040732.1 194444783 complement(1560430..1561251) 1 NC_011080.1 identified by match to protein family HMM PF00089; peptidase S1 and S6 chymotrypsin/Hap 1561251 423368001759 SNSL254_A1594 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidase S1 and S6 chymotrypsin/Hap YP_002040732.1 1560430 R 423368 CDS YP_002040733.1 194444434 complement(1561351..1561470) 1 NC_011080.1 identified by glimmer; hypothetical protein 1561470 423368001760 SNSL254_A1595 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040733.1 1561351 R 423368 CDS YP_002040734.1 194444062 complement(1561520..1561768) 1 NC_011080.1 required for growth and survival under moderately acid conditions; acid shock protein 1561768 423368001761 SNSL254_A1596 Salmonella enterica subsp. enterica serovar Newport str. SL254 acid shock protein YP_002040734.1 1561520 R 423368 CDS YP_002040735.1 194443859 complement(1562163..1563416) 1 NC_011080.1 identified by match to protein family HMM PF07690; inner membrane transport protein YnfM 1563416 423368001762 SNSL254_A1597 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport protein YnfM YP_002040735.1 1562163 R 423368 CDS YP_002040736.1 194443029 1563536..1564435 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1564435 423368001763 SNSL254_A1598 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR substrate binding domain-containing protein YP_002040736.1 1563536 D 423368 CDS YP_002040737.1 194442407 1564563..1565783 1 NC_011080.1 identified by match to protein family HMM PF00480; transcriptional regulator Mic 1565783 mic 423368001764 mic Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator Mic YP_002040737.1 1564563 D 423368 CDS YP_002040738.1 194445356 1565909..1566604 1 NC_011080.1 'DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium'; dithiobiotin synthetase 1566604 bioD2 423368001765 bioD2 Salmonella enterica subsp. enterica serovar Newport str. SL254 dithiobiotin synthetase YP_002040738.1 1565909 D 423368 CDS YP_002040739.1 194446589 complement(1566560..1567849) 1 NC_011080.1 identified by match to protein family HMM PF00654; voltage-gated ClC-type chloride channel ClcB 1567849 423368001766 SNSL254_A1601 Salmonella enterica subsp. enterica serovar Newport str. SL254 voltage-gated ClC-type chloride channel ClcB YP_002040739.1 1566560 R 423368 CDS YP_002040740.1 194445541 complement(1567985..1569133) 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; choline transport ATP-binding protein opuBA 1569133 423368001767 SNSL254_A1602 Salmonella enterica subsp. enterica serovar Newport str. SL254 choline transport ATP-binding protein opuBA YP_002040740.1 1567985 R 423368 CDS YP_002040741.1 194444895 complement(1569133..1569780) 1 NC_011080.1 identified by match to protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein 1569780 423368001768 SNSL254_A1603 Salmonella enterica subsp. enterica serovar Newport str. SL254 binding-protein-dependent transport system inner membrane protein YP_002040741.1 1569133 R 423368 CDS YP_002040742.1 194446205 complement(1569790..1570692) 1 NC_011080.1 identified by match to protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein 1570692 423368001769 SNSL254_A1604 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycine betaine ABC transporter substrate-binding protein YP_002040742.1 1569790 R 423368 CDS YP_002040743.1 194445475 complement(1570721..1571431) 1 NC_011080.1 identified by match to protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein 1571431 423368001770 SNSL254_A1605 Salmonella enterica subsp. enterica serovar Newport str. SL254 binding-protein-dependent transport system inner membrane protein YP_002040743.1 1570721 R 423368 CDS YP_002040744.1 194442324 complement(1571736..1572350) 1 NC_011080.1 'binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane'; twin-argninine leader-binding protein DmsD 1572350 423368001771 SNSL254_A1606 Salmonella enterica subsp. enterica serovar Newport str. SL254 twin-argninine leader-binding protein DmsD YP_002040744.1 1571736 R 423368 CDS YP_002040745.1 194446718 complement(1572393..1573250) 1 NC_011080.1 identified by match to protein family HMM PF04976; dmso reductase anchor subunit 1573250 dmsC 423368001772 dmsC Salmonella enterica subsp. enterica serovar Newport str. SL254 dmso reductase anchor subunit YP_002040745.1 1572393 R 423368 CDS YP_002040746.1 194442787 complement(1573252..1573869) 1 NC_011080.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B 1573869 dmsB_2 423368001773 dmsB_2 Salmonella enterica subsp. enterica serovar Newport str. SL254 dimethylsulfoxide reductase subunit B YP_002040746.1 1573252 R 423368 CDS YP_002040747.1 194442298 complement(1573880..1576315) 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 1576315 423368001774 SNSL254_A1609 Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic dimethyl sulfoxide reductase subunit A YP_002040747.1 1573880 R 423368 CDS YP_002040748.1 194444065 complement(1576414..1578852) 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 1578852 423368001775 SNSL254_A1610 Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic dimethyl sulfoxide reductase subunit A YP_002040748.1 1576414 R 423368 CDS YP_002040749.1 194443492 complement(1579009..1579314) 1 NC_011080.1 identified by match to protein family HMM PF06649; hypothetical protein 1579314 423368001776 SNSL254_A1611 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040749.1 1579009 R 423368 CDS YP_002040750.1 194444682 1579421..1580131 1 NC_011080.1 identified by match to protein family HMM PF06788; hypothetical protein 1580131 423368001777 SNSL254_A1612 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040750.1 1579421 D 423368 CDS YP_002040751.1 194445332 complement(1580172..1580732) 1 NC_011080.1 identified by match to protein family HMM PF00583; diamine N-acetyltransferase 1580732 speG 423368001778 speG Salmonella enterica subsp. enterica serovar Newport str. SL254 diamine N-acetyltransferase YP_002040751.1 1580172 R 423368 CDS YP_002040752.1 194442713 complement(1580768..1581109) 1 NC_011080.1 identified by match to protein family HMM PF06932; hypothetical protein 1581109 423368001779 SNSL254_A1614 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040752.1 1580768 R 423368 CDS YP_002040753.1 194442224 1581261..1581587 1 NC_011080.1 identified by match to protein family HMM PF02694; hypothetical protein 1581587 423368001780 SNSL254_A1615 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040753.1 1581261 D 423368 CDS YP_002040754.1 194446054 1581709..1582923 1 NC_011080.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; starvation sensing protein RspA 1582923 423368001781 SNSL254_A1616 Salmonella enterica subsp. enterica serovar Newport str. SL254 starvation sensing protein RspA YP_002040754.1 1581709 D 423368 CDS YP_002040755.1 194443210 1582934..1583953 1 NC_011080.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; dehydrogenase 1583953 423368001782 SNSL254_A1617 Salmonella enterica subsp. enterica serovar Newport str. SL254 dehydrogenase YP_002040755.1 1582934 D 423368 CDS YP_002040756.1 194444651 1584046..1585386 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; inner membrane metabolite transport protein YdfJ 1585386 423368001783 SNSL254_A1618 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane metabolite transport protein YdfJ YP_002040756.1 1584046 D 423368 CDS YP_002040758.1 194443342 1585530..1586996 1 NC_011080.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 1586996 423368001784 SNSL254_A1619 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-mannonate oxidoreductase YP_002040758.1 1585530 D 423368 CDS YP_002040759.1 194445153 complement(1587063..1587266) 1 NC_011080.1 identified by match to protein family HMM TIGR03318; selenium-binding protein YdfZ 1587266 423368001785 SNSL254_A1621 Salmonella enterica subsp. enterica serovar Newport str. SL254 selenium-binding protein YdfZ YP_002040759.1 1587063 R 423368 CDS YP_002040760.1 194444466 complement(1587447..1588133) 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 1588133 423368001786 SNSL254_A1622 Salmonella enterica subsp. enterica serovar Newport str. SL254 GntR family transcriptional regulator YP_002040760.1 1587447 R 423368 CDS YP_002040761.1 194443948 complement(1588263..1589009) 1 NC_011080.1 'NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine'; 3-hydroxy acid dehydrogenase 1589009 423368001787 SNSL254_A1623 Salmonella enterica subsp. enterica serovar Newport str. SL254 3-hydroxy acid dehydrogenase YP_002040761.1 1588263 R 423368 CDS YP_002040762.1 194444337 1589148..1591190 1 NC_011080.1 identified by match to protein family HMM PF01432; dipeptidyl carboxypeptidase II 1591190 423368001788 SNSL254_A1624 Salmonella enterica subsp. enterica serovar Newport str. SL254 dipeptidyl carboxypeptidase II YP_002040762.1 1589148 D 423368 CDS YP_002040763.1 194442953 1591535..1591717 1 NC_011080.1 hypothetical protein 1591717 423368001789 SNSL254_A1625 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040763.1 1591535 D 423368 CDS YP_002040764.1 194443349 complement(1591837..1592364) 1 NC_011080.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A 1592364 423368001790 SNSL254_A1626 Salmonella enterica subsp. enterica serovar Newport str. SL254 competence damage-inducible protein A YP_002040764.1 1591837 R 423368 CDS YP_002040765.1 194444002 1592791..1593183 1 NC_011080.1 identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein 1593183 423368001791 SNSL254_A1627 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040765.1 1592791 D 423368 CDS YP_002040766.1 194444931 complement(1593530..1593652) 1 NC_011080.1 hypothetical protein 1593652 423368001792 SNSL254_A1628 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040766.1 1593530 R 423368 CDS YP_002040767.1 194445537 complement(1593873..1595060) 1 NC_011080.1 YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; MFS-type transporter YdeE 1595060 423368001793 SNSL254_A1629 Salmonella enterica subsp. enterica serovar Newport str. SL254 MFS-type transporter YdeE YP_002040767.1 1593873 R 423368 CDS YP_002040768.1 194446188 1595291..1596190 1 NC_011080.1 identified by match to protein family HMM PF00892; O-acetylserine/cysteine export protein 1596190 423368001794 SNSL254_A1630 Salmonella enterica subsp. enterica serovar Newport str. SL254 O-acetylserine/cysteine export protein YP_002040768.1 1595291 D 423368 CDS YP_002040769.1 194446638 complement(1596309..1596524) 1 NC_011080.1 hypothetical protein 1596524 423368001795 SNSL254_A1631 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040769.1 1596309 R 423368 CDS YP_002040770.1 194442390 complement(1596553..1596936) 1 NC_011080.1 'transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF'; DNA-binding transcriptional activator MarA 1596936 423368001796 SNSL254_A1632 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator MarA YP_002040770.1 1596553 R 423368 CDS YP_002040771.1 194443038 complement(1596956..1597390) 1 NC_011080.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR 1597390 marR 423368001797 marR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional repressor MarR YP_002040771.1 1596956 R 423368 CDS YP_002040772.1 194444524 1597649..1598314 1 NC_011080.1 'protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function'; multiple drug resistance protein MarC 1598314 423368001798 SNSL254_A1634 Salmonella enterica subsp. enterica serovar Newport str. SL254 multiple drug resistance protein MarC YP_002040772.1 1597649 D 423368 CDS YP_002040773.1 194444455 complement(1598361..1599551) 1 NC_011080.1 identified by match to protein family HMM PF07690; sugar efflux transporter 1599551 423368001799 SNSL254_A1635 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar efflux transporter YP_002040773.1 1598361 R 423368 CDS YP_002040774.1 194446108 complement(1599667..1600539) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain 1600539 423368001800 SNSL254_A1636 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR substrate binding domain YP_002040774.1 1599667 R 423368 CDS YP_002040775.1 194445423 1600642..1602030 1 NC_011080.1 in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 1602030 423368001801 SNSL254_A1637 Salmonella enterica subsp. enterica serovar Newport str. SL254 succinate semialdehyde dehydrogenase YP_002040775.1 1600642 D 423368 CDS YP_002040776.1 194443021 1602103..1603029 1 NC_011080.1 catalyzes the formation of glutamate from glutamine; glutaminase 1603029 423368001802 SNSL254_A1638 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutaminase YP_002040776.1 1602103 D 423368 CDS YP_002040777.1 194442411 1603029..1603388 1 NC_011080.1 hypothetical protein 1603388 423368001803 SNSL254_A1639 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040777.1 1603029 D 423368 CDS YP_008083624.1 513538101 1603611..1604558 1 NC_011080.1 hypothetical protein 1604558 423368001804 SNSL254_A1640 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083624.1 1603611 D 423368 CDS YP_002040778.1 194443429 complement(1604614..1605141) 1 NC_011080.1 hypothetical protein 1605141 423368001805 SNSL254_A1641 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040778.1 1604614 R 423368 CDS YP_002040779.1 194445106 1605873..1606991 1 NC_011080.1 identified by match to protein family HMM PF00267; outer membrane protein N 1606991 423368001806 SNSL254_A1642 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein N YP_002040779.1 1605873 D 423368 CDS YP_002040780.1 194444987 complement(1607121..1607462) 1 NC_011080.1 identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA 1607462 hypA 423368001807 hypA Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase nickel incorporation protein HypA YP_002040780.1 1607121 R 423368 CDS YP_002040781.1 194445920 complement(1607475..1608362) 1 NC_011080.1 dehydrogenase protein 1608362 423368001808 SNSL254_A1644 Salmonella enterica subsp. enterica serovar Newport str. SL254 dehydrogenase protein YP_002040781.1 1607475 R 423368 CDS YP_002040782.1 194445271 complement(1608350..1609411) 1 NC_011080.1 identified by match to protein family HMM PF00301; match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF2 1609411 423368001809 SNSL254_A1645 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase-1 operon protein HyaF2 YP_002040782.1 1608350 R 423368 CDS YP_002040783.1 194442348 complement(1609429..1609839) 1 NC_011080.1 identified by match to protein family HMM PF07449; hydrogenase-1 operon protein HyaE2 1609839 423368001810 SNSL254_A1646 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase-1 operon protein HyaE2 YP_002040783.1 1609429 R 423368 CDS YP_002040784.1 194446514 complement(1609836..1610135) 1 NC_011080.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 1610135 hypC 423368001811 hypC Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase assembly chaperone HypC/HupF YP_002040784.1 1609836 R 423368 CDS YP_002040785.1 194443233 complement(1610135..1610743) 1 NC_011080.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; hydrogenase expression/formation protein 1610743 hybD 423368001812 hybD Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase expression/formation protein YP_002040785.1 1610135 R 423368 CDS YP_002040786.1 194442913 complement(1610749..1611492) 1 NC_011080.1 identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; Ni/Fe-hydrogenase, B-type cytochrome subunit 1611492 cybH 423368001813 cybH Salmonella enterica subsp. enterica serovar Newport str. SL254 Ni/Fe-hydrogenase, B-type cytochrome subunit YP_002040786.1 1610749 R 423368 CDS YP_002040787.1 194444301 complement(1611443..1613245) 1 NC_011080.1 identified by match to protein family HMM PF00374; [Ni/Fe] hydrogenase large subunit 1613245 423368001814 SNSL254_A1650 Salmonella enterica subsp. enterica serovar Newport str. SL254 [Ni/Fe] hydrogenase large subunit YP_002040787.1 1611443 R 423368 CDS YP_002040788.1 194443653 complement(1613248..1614351) 1 NC_011080.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; uptake hydrogenase small subunit 1614351 423368001815 SNSL254_A1651 Salmonella enterica subsp. enterica serovar Newport str. SL254 uptake hydrogenase small subunit YP_002040788.1 1613248 R 423368 CDS YP_002040789.1 194443124 1614779..1615870 1 NC_011080.1 identified by match to protein family HMM PF02275; choloylglycine hydrolase 1615870 423368001816 SNSL254_A1652 Salmonella enterica subsp. enterica serovar Newport str. SL254 choloylglycine hydrolase YP_002040789.1 1614779 D 423368 CDS YP_002040790.1 194442574 1615916..1616707 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; regulatory protein 1616707 423368001817 SNSL254_A1653 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein YP_002040790.1 1615916 D 423368 CDS YP_002040791.1 194443528 complement(1616766..1617791) 1 NC_011080.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-type alcohol dehydrogenase 1617791 423368001818 SNSL254_A1654 Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc-type alcohol dehydrogenase YP_002040791.1 1616766 R 423368 CDS YP_002040792.1 194443655 complement(1617766..1619052) 1 NC_011080.1 identified by match to protein family HMM PF07690; membrane transport protein 1619052 423368001819 SNSL254_A1655 Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane transport protein YP_002040792.1 1617766 R 423368 CDS YP_002040793.2 448967522 complement(1619229..1620785) 1 NC_011080.1 PhoPQ-regulated protein PqaA 1620785 pqaA 423368001820 pqaA Salmonella enterica subsp. enterica serovar Newport str. SL254 PhoPQ-regulated protein PqaA YP_002040793.2 1619229 R 423368 CDS YP_002040794.1 194444944 complement(1620855..1622096) 1 NC_011080.1 identified by match to protein family HMM PF07690; major facilitator superfamily protein 1622096 423368001821 SNSL254_A1657 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator superfamily protein YP_002040794.1 1620855 R 423368 CDS YP_002040795.1 194446646 complement(1622086..1623594) 1 NC_011080.1 identified by match to protein family HMM PF01494; hypothetical protein 1623594 423368001822 SNSL254_A1658 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040795.1 1622086 R 423368 CDS YP_002040796.1 194445689 1623639..1624127 1 NC_011080.1 identified by match to protein family HMM PF01047; marR family transcriptional regulator 1624127 423368001823 SNSL254_A1659 Salmonella enterica subsp. enterica serovar Newport str. SL254 marR family transcriptional regulator YP_002040796.1 1623639 D 423368 CDS YP_002040797.1 194442935 1624320..1625399 1 NC_011080.1 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 1625399 423368001824 SNSL254_A1660 Salmonella enterica subsp. enterica serovar Newport str. SL254 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_002040797.1 1624320 D 423368 CDS YP_002040798.1 194442691 complement(1625451..1625567) 1 NC_011080.1 endoribonuclease L-PSP 1625567 423368001825 SNSL254_A1661 Salmonella enterica subsp. enterica serovar Newport str. SL254 endoribonuclease L-PSP YP_002040798.1 1625451 R 423368 CDS YP_002040799.1 194446787 1626280..1626792 1 NC_011080.1 identified by match to protein family HMM PF07377; hypothetical protein 1626792 423368001826 SNSL254_A1663 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040799.1 1626280 D 423368 CDS YP_002040800.1 194445206 complement(1626888..1627076) 1 NC_011080.1 hypothetical protein 1627076 423368001827 SNSL254_A1664 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040800.1 1626888 R 423368 CDS YP_002040801.1 194446024 complement(1627118..1627234) 1 NC_011080.1 identified by glimmer; hypothetical protein 1627234 423368001828 SNSL254_A1665 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040801.1 1627118 R 423368 CDS YP_002040802.1 194445939 1627375..1627497 1 NC_011080.1 LysR family transcriptional regulator 1627497 423368001829 SNSL254_A1666 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002040802.1 1627375 D 423368 CDS YP_002040803.1 194442719 1628465..1629472 1 NC_011080.1 identified by match to protein family HMM PF00532; HTH-type transcriptional regulator GalR 1629472 423368001831 SNSL254_A1669 Salmonella enterica subsp. enterica serovar Newport str. SL254 HTH-type transcriptional regulator GalR YP_002040803.1 1628465 D 423368 CDS YP_002040804.1 194442795 1629616..1631067 1 NC_011080.1 identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC 1631067 nhaC 423368001832 nhaC Salmonella enterica subsp. enterica serovar Newport str. SL254 Na+/H+ antiporter NhaC YP_002040804.1 1629616 D 423368 CDS YP_002040805.1 194444348 1631080..1632282 1 NC_011080.1 identified by match to protein family HMM PF00155; class I and II aminotransferase 1632282 423368001833 SNSL254_A1671 Salmonella enterica subsp. enterica serovar Newport str. SL254 class I and II aminotransferase YP_002040805.1 1631080 D 423368 CDS YP_002040806.1 194444960 complement(1632395..1634470) 1 NC_011080.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; glycogen debranching protein GlgX 1634470 glgX 423368001834 glgX Salmonella enterica subsp. enterica serovar Newport str. SL254 glycogen debranching protein GlgX YP_002040806.1 1632395 R 423368 CDS YP_002040807.1 194444717 complement(1634527..1637055) 1 NC_011080.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401; malto-oligosyltrehalose synthase 1637055 treY 423368001835 treY Salmonella enterica subsp. enterica serovar Newport str. SL254 malto-oligosyltrehalose synthase YP_002040807.1 1634527 R 423368 CDS YP_002040808.1 194446265 complement(1637052..1638836) 1 NC_011080.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402; malto-oligosyltrehalose trehalohydrolase 1638836 treZ 423368001836 treZ Salmonella enterica subsp. enterica serovar Newport str. SL254 malto-oligosyltrehalose trehalohydrolase YP_002040808.1 1637052 R 423368 CDS YP_002040809.1 194446283 complement(1638965..1639750) 1 NC_011080.1 identified by match to protein family HMM PF06884; hypothetical protein 1639750 423368001837 SNSL254_A1675 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040809.1 1638965 R 423368 CDS YP_002040810.1 194444627 complement(1639893..1640222) 1 NC_011080.1 acid-resistance protein 1640222 hdeB 423368001838 hdeB Salmonella enterica subsp. enterica serovar Newport str. SL254 acid-resistance protein YP_002040810.1 1639893 R 423368 CDS YP_002040811.1 194444951 complement(1640572..1641003) 1 NC_011080.1 identified by match to protein family HMM PF02566; match to protein family HMM TIGR03562; peroxiredoxin OsmC 1641003 423368001839 SNSL254_A1677 Salmonella enterica subsp. enterica serovar Newport str. SL254 peroxiredoxin OsmC YP_002040811.1 1640572 R 423368 CDS YP_002040812.1 194445476 1641515..1641730 1 NC_011080.1 biofilm-dependent modulation protein 1641730 423368001840 SNSL254_A1678 Salmonella enterica subsp. enterica serovar Newport str. SL254 biofilm-dependent modulation protein YP_002040812.1 1641515 D 423368 CDS YP_002040813.1 194444283 complement(1641866..1642000) 1 NC_011080.1 identified by glimmer; hypothetical protein 1642000 423368001841 SNSL254_A1679 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040813.1 1641866 R 423368 CDS YP_002040814.1 194442492 1642145..1643842 1 NC_011080.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1643842 423368001842 SNSL254_A1680 Salmonella enterica subsp. enterica serovar Newport str. SL254 malate dehydrogenase YP_002040814.1 1642145 D 423368 CDS YP_002040815.1 194442930 1644128..1645138 1 NC_011080.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1645138 423368001843 SNSL254_A1681 Salmonella enterica subsp. enterica serovar Newport str. SL254 alcohol dehydrogenase YP_002040815.1 1644128 D 423368 CDS YP_002040816.1 194445734 complement(1645229..1645885) 1 NC_011080.1 'nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase'; formate dehydrogenase-N subunit gamma 1645885 423368001844 SNSL254_A1682 Salmonella enterica subsp. enterica serovar Newport str. SL254 formate dehydrogenase-N subunit gamma YP_002040816.1 1645229 R 423368 CDS YP_002040817.1 194443437 complement(1645878..1646756) 1 NC_011080.1 identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase, nitrate-inducible, iron-sulfur subunit 1646756 fdnH 423368001845 fdnH Salmonella enterica subsp. enterica serovar Newport str. SL254 formate dehydrogenase, nitrate-inducible, iron-sulfur subunit YP_002040817.1 1645878 R 423368 CDS YP_002040818.1 194445843 1650101..1650982 1 NC_011080.1 identified by match to protein family HMM PF00892; hypothetical protein 1650982 423368001847 SNSL254_A1686 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040818.1 1650101 D 423368 CDS YP_002040819.1 194443977 1651507..1652595 1 NC_011080.1 identified by match to protein family HMM PF00267; outer membrane porin protein LC 1652595 423368001848 SNSL254_A1687 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane porin protein LC YP_002040819.1 1651507 D 423368 CDS YP_002040820.1 194444485 1652679..1653119 1 NC_011080.1 identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating protein 1653119 423368001849 SNSL254_A1688 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione-dependent formaldehyde-activating protein YP_002040820.1 1652679 D 423368 CDS YP_002040821.1 194443839 complement(1653144..1654631) 1 NC_011080.1 identified by match to protein family HMM PF07690; methyl viologen resistance protein SmvA 1654631 423368001850 SNSL254_A1689 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyl viologen resistance protein SmvA YP_002040821.1 1653144 R 423368 CDS YP_002040822.1 194445462 1654749..1655327 1 NC_011080.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1655327 423368001851 SNSL254_A1690 Salmonella enterica subsp. enterica serovar Newport str. SL254 TetR family transcriptional regulator YP_002040822.1 1654749 D 423368 CDS YP_002040823.1 194444834 1655541..1656929 1 NC_011080.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 2 1656929 423368001852 SNSL254_A1691 Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrite extrusion protein 2 YP_002040823.1 1655541 D 423368 CDS YP_002040824.1 194446518 1657021..1660761 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase subunit alpha 1660761 423368001853 SNSL254_A1692 Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrate reductase subunit alpha YP_002040824.1 1657021 D 423368 CDS YP_002040825.1 194445816 1660758..1662302 1 NC_011080.1 identified by match to protein family HMM TIGR01660; nitrate reductase 2 subunit beta 1662302 narY 423368001854 narY Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrate reductase 2 subunit beta YP_002040825.1 1660758 D 423368 CDS YP_002040826.1 194443547 1662302..1662997 1 NC_011080.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 2 1662997 narW 423368001855 narW Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrate reductase molybdenum cofactor assembly chaperone 2 YP_002040826.1 1662302 D 423368 CDS YP_002040827.1 194443632 1662994..1663674 1 NC_011080.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase 2 subunit gamma 1663674 narV 423368001856 narV Salmonella enterica subsp. enterica serovar Newport str. SL254 respiratory nitrate reductase 2 subunit gamma YP_002040827.1 1662994 D 423368 CDS YP_002040828.1 194444446 1663779..1664672 1 NC_011080.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; hypothetical protein 1664672 423368001857 SNSL254_A1696 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040828.1 1663779 D 423368 CDS YP_002040829.1 194442383 complement(1664708..1665553) 1 NC_011080.1 identified by match to protein family HMM PF00797; N-acetyltransferase superfamily protein 1665553 423368001858 SNSL254_A1697 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetyltransferase superfamily protein YP_002040829.1 1664708 R 423368 CDS YP_002040830.1 194443129 complement(1665837..1666469) 1 NC_011080.1 hypothetical protein 1666469 423368001859 SNSL254_A1698 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040830.1 1665837 R 423368 CDS YP_002040831.1 194445930 1666982..1668475 1 NC_011080.1 identified by match to protein family HMM PF00324; L-asparagine permease 1668475 423368001860 SNSL254_A1699 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-asparagine permease YP_002040831.1 1666982 D 423368 CDS YP_002040832.1 194446483 complement(1668552..1668740) 1 NC_011080.1 identified by match to protein family HMM PF06004; hypothetical protein 1668740 423368001861 SNSL254_A1700 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040832.1 1668552 R 423368 CDS YP_002040833.1 194445562 complement(1668918..1669979) 1 NC_011080.1 hypothetical protein 1669979 423368001862 SNSL254_A1701 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040833.1 1668918 R 423368 CDS YP_002040834.1 194445165 1670243..1672363 1 NC_011080.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor yncD 1672363 423368001863 SNSL254_A1702 Salmonella enterica subsp. enterica serovar Newport str. SL254 TonB-dependent receptor yncD YP_002040834.1 1670243 D 423368 CDS YP_002040835.1 194444170 complement(1672430..1673095) 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; DNA-binding transcriptional regulator 1673095 423368001864 SNSL254_A1703 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator YP_002040835.1 1672430 R 423368 CDS YP_002040836.1 194446145 complement(1673429..1674466) 1 NC_011080.1 identified by match to protein family HMM PF00107; NADP-dependent oxidoreductase yncb 1674466 423368001865 SNSL254_A1704 Salmonella enterica subsp. enterica serovar Newport str. SL254 NADP-dependent oxidoreductase yncb YP_002040836.1 1673429 R 423368 CDS YP_002040837.1 194444449 1674691..1675206 1 NC_011080.1 identified by match to protein family HMM PF00583; phosphinothricin acetyltransferase 1675206 yncA 423368001866 yncA Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphinothricin acetyltransferase YP_002040837.1 1674691 D 423368 CDS YP_002040838.1 194445063 1675206..1675655 1 NC_011080.1 identified by match to protein family HMM PF04657; hypothetical protein 1675655 423368001867 SNSL254_A1706 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040838.1 1675206 D 423368 CDS YP_002040839.1 194443526 complement(1675660..1675893) 1 NC_011080.1 hypothetical protein 1675893 423368001868 SNSL254_A1707 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040839.1 1675660 R 423368 CDS YP_002040840.1 194443745 1676117..1677442 1 NC_011080.1 ssrAB activated gene 1677442 423368001869 SNSL254_A1708 Salmonella enterica subsp. enterica serovar Newport str. SL254 ssrAB activated gene YP_002040840.1 1676117 D 423368 CDS YP_002040841.1 194442244 1677447..1680428 1 NC_011080.1 identified by match to protein family HMM PF07520; virulence protein SrfB 1680428 423368001870 SNSL254_A1709 Salmonella enterica subsp. enterica serovar Newport str. SL254 virulence protein SrfB YP_002040841.1 1677447 D 423368 CDS YP_002040842.1 194443048 1680425..1682569 1 NC_011080.1 virulence effector protein 1682569 423368001871 SNSL254_A1710 Salmonella enterica subsp. enterica serovar Newport str. SL254 virulence effector protein YP_002040842.1 1680425 D 423368 CDS YP_002040843.1 194446098 complement(1682614..1682796) 1 NC_011080.1 hypothetical protein 1682796 423368001872 SNSL254_A1711 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040843.1 1682614 R 423368 CDS YP_002040844.1 194446303 complement(1683186..1684631) 1 NC_011080.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1684631 ydcW 423368001873 ydcW Salmonella enterica subsp. enterica serovar Newport str. SL254 gamma-aminobutyraldehyde dehydrogenase YP_002040844.1 1683186 R 423368 CDS YP_002040845.1 194444891 complement(1684746..1686170) 1 NC_011080.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; classes I and II superfamily aminotransferase 1686170 423368001874 SNSL254_A1713 Salmonella enterica subsp. enterica serovar Newport str. SL254 classes I and II superfamily aminotransferase YP_002040845.1 1684746 R 423368 CDS YP_002040846.1 194442647 complement(1686306..1687076) 1 NC_011080.1 identified by match to protein family HMM PF01427; hypothetical protein 1687076 423368001875 SNSL254_A1714 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040846.1 1686306 R 423368 CDS YP_002040847.1 194445113 complement(1687598..1687996) 1 NC_011080.1 hypothetical protein 1687996 423368001876 SNSL254_A1715 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040847.1 1687598 R 423368 CDS YP_002040848.1 194444447 1688533..1689483 1 NC_011080.1 translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1689483 sifB 423368001877 sifB Salmonella enterica subsp. enterica serovar Newport str. SL254 secreted effector protein YP_002040848.1 1688533 D 423368 CDS YP_002040849.1 194446445 1689757..1689987 1 NC_011080.1 hypothetical protein 1689987 423368001878 SNSL254_A1717 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040849.1 1689757 D 423368 CDS YP_002040850.1 194444629 complement(1689988..1691952) 1 NC_011080.1 identified by match to protein family HMM PF01136; peptidase, U32 family 1691952 423368001879 SNSL254_A1718 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidase, U32 family YP_002040850.1 1689988 R 423368 CDS YP_002040851.1 194445981 complement(1692031..1692567) 1 NC_011080.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; XRE family transcriptional regulator 1692567 423368001880 SNSL254_A1719 Salmonella enterica subsp. enterica serovar Newport str. SL254 XRE family transcriptional regulator YP_002040851.1 1692031 R 423368 CDS YP_002040852.1 194446451 1692659..1693837 1 NC_011080.1 identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843; benzoate transporter 1693837 423368001881 SNSL254_A1720 Salmonella enterica subsp. enterica serovar Newport str. SL254 benzoate transporter YP_002040852.1 1692659 D 423368 CDS YP_002040853.1 194442644 complement(1693891..1694559) 1 NC_011080.1 lipoprotein 1694559 423368001882 SNSL254_A1721 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002040853.1 1693891 R 423368 CDS YP_002040854.1 194443061 complement(1694715..1695311) 1 NC_011080.1 with TehA confers resistance to tellurite; tellurite resistance protein TehB 1695311 tehB 423368001883 tehB Salmonella enterica subsp. enterica serovar Newport str. SL254 tellurite resistance protein TehB YP_002040854.1 1694715 R 423368 CDS YP_002040855.1 194446014 complement(1695298..1696311) 1 NC_011080.1 identified by match to protein family HMM PF03595; match to protein family HMM TIGR00816; potassium-tellurite ethidium and proflavin transporter 1696311 423368001884 SNSL254_A1723 Salmonella enterica subsp. enterica serovar Newport str. SL254 potassium-tellurite ethidium and proflavin transporter YP_002040855.1 1695298 R 423368 CDS YP_002040856.1 194443370 1696418..1697398 1 NC_011080.1 hypothetical protein 1697398 423368001885 SNSL254_A1724 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040856.1 1696418 D 423368 CDS YP_002040857.1 194446346 complement(1697395..1697934) 1 NC_011080.1 identified by match to protein family HMM PF00583; ribosomal-protein-L7/L12-serine acetyltransferase 1697934 423368001886 SNSL254_A1725 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosomal-protein-L7/L12-serine acetyltransferase YP_002040857.1 1697395 R 423368 CDS YP_002040858.1 194443032 1698151..1699269 1 NC_011080.1 identified by match to protein family HMM PF01546; match to protein family HMM PF05343; sgc region protein SgcX 1699269 423368001887 SNSL254_A1726 Salmonella enterica subsp. enterica serovar Newport str. SL254 sgc region protein SgcX YP_002040858.1 1698151 D 423368 CDS YP_002040859.1 194445471 1699266..1699547 1 NC_011080.1 identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB 1699547 423368001888 SNSL254_A1727 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system lactose/cellobiose-specific transporter subunit IIB YP_002040859.1 1699266 D 423368 CDS YP_002040860.1 194444879 1699558..1700871 1 NC_011080.1 identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system transporter subunit IIC 1700871 423368001889 SNSL254_A1728 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system transporter subunit IIC YP_002040860.1 1699558 D 423368 CDS YP_002040861.1 194446580 1700885..1701691 1 NC_011080.1 identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259; hypothetical protein 1701691 423368001890 SNSL254_A1729 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040861.1 1700885 D 423368 CDS YP_002040862.1 194446117 1701823..1702260 1 NC_011080.1 identified by match to protein family HMM PF00359; PTS system sugar-specific transporter subunit EIIA 2 1702260 423368001891 SNSL254_A1730 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system sugar-specific transporter subunit EIIA 2 YP_002040862.1 1701823 D 423368 CDS YP_002040863.1 194442867 1702272..1702904 1 NC_011080.1 identified by match to protein family HMM PF00834; epimerase 1702904 423368001892 SNSL254_A1731 Salmonella enterica subsp. enterica serovar Newport str. SL254 epimerase YP_002040863.1 1702272 D 423368 CDS YP_002040864.1 194442323 1702914..1703711 1 NC_011080.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; regulatory protein 1703711 423368001893 SNSL254_A1732 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein YP_002040864.1 1702914 D 423368 CDS YP_002040865.1 194444163 1703711..1704148 1 NC_011080.1 identified by match to protein family HMM PF00583; aminoglycoside 6'-N-acetyltransferase Iz 1704148 423368001894 SNSL254_A1733 Salmonella enterica subsp. enterica serovar Newport str. SL254 aminoglycoside 6'-N-acetyltransferase Iz YP_002040865.1 1703711 D 423368 CDS YP_002040866.1 194444997 complement(1704195..1705397) 1 NC_011080.1 identified by match to protein family HMM PF01070; match to protein family HMM PF01180; L-lactate oxidase 1705397 423368001895 SNSL254_A1734 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-lactate oxidase YP_002040866.1 1704195 R 423368 CDS YP_002040867.1 194443294 complement(1705409..1705975) 1 NC_011080.1 identified by match to protein family HMM PF04264; hypothetical protein 1705975 423368001896 SNSL254_A1735 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040867.1 1705409 R 423368 CDS YP_002040868.1 194445996 complement(1706180..1707799) 1 NC_011080.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1707799 mdoD 423368001897 mdoD Salmonella enterica subsp. enterica serovar Newport str. SL254 glucan biosynthesis protein D YP_002040868.1 1706180 R 423368 CDS YP_002040869.1 194444347 complement(1708055..1709563) 1 NC_011080.1 identified by match to protein family HMM PF00135; carboxylesterase 1709563 423368001898 SNSL254_A1737 Salmonella enterica subsp. enterica serovar Newport str. SL254 carboxylesterase YP_002040869.1 1708055 R 423368 CDS YP_002040870.1 194442361 complement(1709612..1710955) 1 NC_011080.1 identified by match to protein family HMM PF07063; hypothetical protein 1710955 423368001899 SNSL254_A1738 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040870.1 1709612 R 423368 CDS YP_002040871.1 194445095 1711248..1712171 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1712171 423368001900 SNSL254_A1739 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR substrate binding domain-containing protein YP_002040871.1 1711248 D 423368 CDS YP_002040872.1 194443481 complement(1712232..1713857) 1 NC_011080.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein III 1713857 423368001901 SNSL254_A1740 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyl-accepting chemotaxis protein III YP_002040872.1 1712232 R 423368 CDS YP_002040873.1 194444996 complement(1714026..1715144) 1 NC_011080.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 1715144 423368001902 SNSL254_A1741 Salmonella enterica subsp. enterica serovar Newport str. SL254 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_002040873.1 1714026 R 423368 CDS YP_002040874.1 194445623 complement(1715176..1715451) 1 NC_011080.1 identified by match to protein family HMM PF02583; hypothetical protein 1715451 423368001903 SNSL254_A1742 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040874.1 1715176 R 423368 CDS YP_002040875.1 194443385 complement(1716214..1716339) 1 NC_011080.1 identified by glimmer; hypothetical protein 1716339 423368001904 SNSL254_A1743 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040875.1 1716214 R 423368 CDS YP_002040876.1 194443578 1716359..1716514 1 NC_011080.1 identified by glimmer; hypothetical protein 1716514 423368001905 SNSL254_A1744 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040876.1 1716359 D 423368 CDS YP_002040877.1 194446154 complement(1716504..1717220) 1 NC_011080.1 hypothetical protein 1717220 423368001906 SNSL254_A1745 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040877.1 1716504 R 423368 CDS YP_002040878.1 194444802 complement(1717404..1717517) 1 NC_011080.1 identified by glimmer; hypothetical protein 1717517 423368001907 SNSL254_A1746 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040878.1 1717404 R 423368 CDS YP_002040879.1 194442907 1717646..1718872 1 NC_011080.1 secreted effector protein 1718872 423368001908 SNSL254_A1747 Salmonella enterica subsp. enterica serovar Newport str. SL254 secreted effector protein YP_002040879.1 1717646 D 423368 CDS YP_002040880.1 194443571 complement(1718993..1719337) 1 NC_011080.1 identified by match to protein family HMM PF06961; cyanate transport 1719337 423368001909 SNSL254_A1748 Salmonella enterica subsp. enterica serovar Newport str. SL254 cyanate transport YP_002040880.1 1718993 R 423368 CDS YP_002040881.1 194446811 1720244..1721005 1 NC_011080.1 identified by match to protein family HMM PF00497; periplasmic binding protein 1721005 423368001910 SNSL254_A1749 Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic binding protein YP_002040881.1 1720244 D 423368 CDS YP_002040882.1 194442222 1721012..1721659 1 NC_011080.1 ABC transporter permease 1721659 423368001911 SNSL254_A1750 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002040882.1 1721012 D 423368 CDS YP_002040883.1 194446106 1721684..1722415 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1722415 423368001912 SNSL254_A1751 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002040883.1 1721684 D 423368 CDS YP_002040884.1 194446763 1722412..1723092 1 NC_011080.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; ABC transporter membrane protein 1723092 423368001913 SNSL254_A1752 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter membrane protein YP_002040884.1 1722412 D 423368 CDS YP_002040885.1 194444806 1723229..1724779 1 NC_011080.1 hypothetical protein 1724779 423368001914 SNSL254_A1753 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040885.1 1723229 D 423368 CDS YP_002040886.1 194442524 1725195..1725905 1 NC_011080.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; type 12 methyltransferase 1725905 423368001915 SNSL254_A1754 Salmonella enterica subsp. enterica serovar Newport str. SL254 type 12 methyltransferase YP_002040886.1 1725195 D 423368 CDS YP_002040887.1 194445184 complement(1726176..1726706) 1 NC_011080.1 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 1726706 423368001917 SNSL254_A1756 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome b561 YP_002040887.1 1726176 R 423368 CDS YP_002040888.1 194443814 complement(1726823..1727623) 1 NC_011080.1 identified by match to protein family HMM PF02698; hypothetical protein 1727623 423368001918 SNSL254_A1757 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040888.1 1726823 R 423368 CDS YP_002040889.1 194446497 complement(1727687..1731589) 1 NC_011080.1 'involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain'; ATP-dependent RNA helicase HrpA 1731589 hrpA 423368001919 hrpA Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent RNA helicase HrpA YP_002040889.1 1727687 R 423368 CDS YP_002040890.1 194446534 1731790..1732395 1 NC_011080.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1732395 423368001920 SNSL254_A1759 Salmonella enterica subsp. enterica serovar Newport str. SL254 azoreductase YP_002040890.1 1731790 D 423368 CDS YP_002040891.1 194444551 complement(1732392..1732841) 1 NC_011080.1 identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating protein 1732841 423368001921 SNSL254_A1760 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione-dependent formaldehyde-activating protein YP_002040891.1 1732392 R 423368 CDS YP_002040892.1 194444536 complement(1732984..1733307) 1 NC_011080.1 identified by match to protein family HMM PF07027; hypothetical protein 1733307 423368001922 SNSL254_A1761 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040892.1 1732984 R 423368 CDS YP_002040893.1 194442978 complement(1733315..1733506) 1 NC_011080.1 hypothetical protein 1733506 423368001923 SNSL254_A1762 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040893.1 1733315 R 423368 CDS YP_002040894.1 194443167 complement(1733506..1736142) 1 NC_011080.1 hypothetical protein 1736142 423368001924 SNSL254_A1763 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040894.1 1733506 R 423368 CDS YP_002040895.1 194443681 1736382..1737371 1 NC_011080.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 1737371 423368001925 SNSL254_A1764 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-lactate dehydrogenase YP_002040895.1 1736382 D 423368 CDS YP_002040896.1 194444147 1737482..1737892 1 NC_011080.1 identified by match to protein family HMM PF03724; heat-inducible protein 1737892 423368001926 SNSL254_A1765 Salmonella enterica subsp. enterica serovar Newport str. SL254 heat-inducible protein YP_002040896.1 1737482 D 423368 CDS YP_002040897.1 194444456 complement(1737936..1738202) 1 NC_011080.1 hypothetical protein 1738202 423368001927 SNSL254_A1766 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040897.1 1737936 R 423368 CDS YP_002040898.1 194444530 complement(1738241..1738372) 1 NC_011080.1 hypothetical protein 1738372 423368001928 SNSL254_A1767 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040898.1 1738241 R 423368 CDS YP_002040899.1 194445273 1738478..1742002 1 NC_011080.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 1742002 nifJ 423368001929 nifJ Salmonella enterica subsp. enterica serovar Newport str. SL254 pyruvate:ferredoxin (flavodoxin) oxidoreductase YP_002040899.1 1738478 D 423368 CDS YP_002040900.1 194442535 1742484..1742918 1 NC_011080.1 identified by match to protein family HMM PF00582; universal stress protein F 1742918 423368001931 SNSL254_A1771 Salmonella enterica subsp. enterica serovar Newport str. SL254 universal stress protein F YP_002040900.1 1742484 D 423368 CDS YP_002040901.1 194446240 complement(1742971..1743309) 1 NC_011080.1 identified by match to protein family HMM PF00893; multidrug transporter EmrE 1743309 423368001932 SNSL254_A1772 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug transporter EmrE YP_002040901.1 1742971 R 423368 CDS YP_002040902.1 194442747 complement(1743302..1743496) 1 NC_011080.1 identified by glimmer; hypothetical protein 1743496 423368001933 SNSL254_A1773 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040902.1 1743302 R 423368 CDS YP_002040903.1 194443213 1743664..1744599 1 NC_011080.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1744599 423368001934 SNSL254_A1774 Salmonella enterica subsp. enterica serovar Newport str. SL254 C32 tRNA thiolase YP_002040903.1 1743664 D 423368 CDS YP_002040904.1 194445037 complement(1744643..1746016) 1 NC_011080.1 'exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA'; ATP-dependent RNA helicase DbpA 1746016 423368001935 SNSL254_A1775 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent RNA helicase DbpA YP_002040904.1 1744643 R 423368 CDS YP_002040905.1 194446644 complement(1746503..1747486) 1 NC_011080.1 identified by match to protein family HMM PF01544; zinc transporter 1747486 zntB 423368001937 zntB Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc transporter YP_002040905.1 1746503 R 423368 CDS YP_002040906.1 194444579 complement(1747632..1748744) 1 NC_011080.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 1748744 423368001938 SNSL254_A1778 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyl-accepting chemotaxis sensory transducer YP_002040906.1 1747632 R 423368 CDS YP_002040907.1 194444993 complement(1748797..1748958) 1 NC_011080.1 hypothetical protein 1748958 423368001939 SNSL254_A1779 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040907.1 1748797 R 423368 CDS YP_002040908.1 194446800 complement(1749037..1749216) 1 NC_011080.1 identified by glimmer; hypothetical protein 1749216 423368001940 SNSL254_A1780 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040908.1 1749037 R 423368 CDS YP_002040909.1 194445994 complement(1749197..1749760) 1 NC_011080.1 identified by match to protein family HMM PF01713; Smr protein/MutS2 1749760 423368001941 SNSL254_A1781 Salmonella enterica subsp. enterica serovar Newport str. SL254 Smr protein/MutS2 YP_002040909.1 1749197 R 423368 CDS YP_002040910.1 194443017 1750018..1750533 1 NC_011080.1 identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1750533 423368001942 SNSL254_A1782 Salmonella enterica subsp. enterica serovar Newport str. SL254 O-6-alkylguanine-DNA:cysteine-protein methyltransferase YP_002040910.1 1750018 D 423368 CDS YP_002040911.1 194442382 1750729..1751481 1 NC_011080.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1751481 fnr 423368001943 fnr Salmonella enterica subsp. enterica serovar Newport str. SL254 fumarate/nitrate reduction transcriptional regulator YP_002040911.1 1750729 D 423368 CDS YP_002040912.1 194444013 1751632..1752579 1 NC_011080.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1752579 uspE 423368001944 uspE Salmonella enterica subsp. enterica serovar Newport str. SL254 universal stress protein UspE YP_002040912.1 1751632 D 423368 CDS YP_002040913.1 194443360 complement(1752634..1752888) 1 NC_011080.1 hypothetical protein 1752888 423368001945 SNSL254_A1785 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040913.1 1752634 R 423368 CDS YP_002040914.1 194444932 1753127..1754158 1 NC_011080.1 identified by match to protein family HMM PF00924; MscS family inner membrane protein YnaI 1754158 423368001946 SNSL254_A1786 Salmonella enterica subsp. enterica serovar Newport str. SL254 MscS family inner membrane protein YnaI YP_002040914.1 1753127 D 423368 CDS YP_002040915.1 194442417 complement(1754244..1754846) 1 NC_011080.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; Cro/CI family transcriptional regulator 1754846 423368001947 SNSL254_A1787 Salmonella enterica subsp. enterica serovar Newport str. SL254 Cro/CI family transcriptional regulator YP_002040915.1 1754244 R 423368 CDS YP_002040916.1 194446781 1754890..1755576 1 NC_011080.1 identified by match to protein family HMM PF03483; B3/4 domain-containing protein 1755576 423368001948 SNSL254_A1788 Salmonella enterica subsp. enterica serovar Newport str. SL254 B3/4 domain-containing protein YP_002040916.1 1754890 D 423368 CDS YP_002040917.1 194446234 1755604..1755942 1 NC_011080.1 hypothetical protein 1755942 423368001949 SNSL254_A1789 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040917.1 1755604 D 423368 CDS YP_002040918.1 194445495 complement(1756048..1756566) 1 NC_011080.1 thiol peroxidase 1756566 423368001950 SNSL254_A1790 Salmonella enterica subsp. enterica serovar Newport str. SL254 thiol peroxidase YP_002040918.1 1756048 R 423368 CDS YP_002040919.1 194444874 complement(1756701..1757525) 1 NC_011080.1 hypothetical protein 1757525 423368001951 SNSL254_A1791 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040919.1 1756701 R 423368 CDS YP_002040920.1 194446011 complement(1757552..1759534) 1 NC_011080.1 hypothetical protein 1759534 423368001952 SNSL254_A1792 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040920.1 1757552 R 423368 CDS YP_002040921.2 448967523 complement(1759609..1760454) 1 NC_011080.1 hypothetical protein 1760454 423368001953 SNSL254_A1793 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040921.2 1759609 R 423368 CDS YP_002040922.1 194444690 1760754..1761605 1 NC_011080.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; regulatory protein 1761605 423368001954 SNSL254_A1794 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein YP_002040922.1 1760754 D 423368 CDS YP_002040923.1 194444290 1761997..1763106 1 NC_011080.1 hypothetical protein 1763106 423368001955 SNSL254_A1795 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040923.1 1761997 D 423368 CDS YP_002040924.2 448967524 complement(1763320..1763556) 1 NC_011080.1 identified by match to protein family HMM PF06004; outer membrane lipoprotein 1763556 423368001956 SNSL254_A1796 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein YP_002040924.2 1763320 R 423368 CDS YP_002040925.1 194442661 complement(1763685..1764275) 1 NC_011080.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1764275 423368001957 SNSL254_A1797 Salmonella enterica subsp. enterica serovar Newport str. SL254 TetR family transcriptional regulator YP_002040925.1 1763685 R 423368 CDS YP_002040926.1 194443014 1764353..1765066 1 NC_011080.1 identified by match to protein family HMM PF00106; oxidoreductase 1765066 423368001958 SNSL254_A1798 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase YP_002040926.1 1764353 D 423368 CDS YP_002040927.1 194443741 complement(1765157..1766026) 1 NC_011080.1 identified by match to protein family HMM PF00248; 2,5-diketo-D-gluconate reductase A 1766026 423368001959 SNSL254_A1799 Salmonella enterica subsp. enterica serovar Newport str. SL254 2,5-diketo-D-gluconate reductase A YP_002040927.1 1765157 R 423368 CDS YP_002040928.1 194443986 complement(1766217..1766342) 1 NC_011080.1 identified by glimmer; hypothetical protein 1766342 423368001960 SNSL254_A1800 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040928.1 1766217 R 423368 CDS YP_002040929.1 194444641 complement(1766303..1767208) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; regulatory protein LysR 1767208 423368001961 SNSL254_A1801 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein LysR YP_002040929.1 1766303 R 423368 CDS YP_002040930.1 194444284 1767327..1768256 1 NC_011080.1 identified by match to protein family HMM PF05368; isoflavone reductase 1768256 423368001962 SNSL254_A1802 Salmonella enterica subsp. enterica serovar Newport str. SL254 isoflavone reductase YP_002040930.1 1767327 D 423368 CDS YP_002040931.1 194445072 complement(1768353..1769966) 1 NC_011080.1 identified by match to protein family HMM PF00496; periplasmic murein peptide-binding protein 1769966 423368001963 SNSL254_A1803 Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic murein peptide-binding protein YP_002040931.1 1768353 R 423368 CDS YP_002040932.1 194446019 1770156..1770884 1 NC_011080.1 identified by match to protein family HMM PF00246; murein peptide amidase A 1770884 423368001964 SNSL254_A1804 Salmonella enterica subsp. enterica serovar Newport str. SL254 murein peptide amidase A YP_002040932.1 1770156 D 423368 CDS YP_002040933.1 194445219 complement(1770859..1771824) 1 NC_011080.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing domain-containing protein 1771824 423368001965 SNSL254_A1805 Salmonella enterica subsp. enterica serovar Newport str. SL254 mandelate racemase/muconate lactonizing domain-containing protein YP_002040933.1 1770859 R 423368 CDS YP_002040934.1 194446255 1771940..1772446 1 NC_011080.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1772446 tpx 423368001966 tpx Salmonella enterica subsp. enterica serovar Newport str. SL254 thiol peroxidase YP_002040934.1 1771940 D 423368 CDS YP_002040935.1 194443344 complement(1772536..1774077) 1 NC_011080.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 1774077 423368001967 SNSL254_A1807 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator TyrR YP_002040935.1 1772536 R 423368 CDS YP_002040936.1 194445309 complement(1774225..1775286) 1 NC_011080.1 identified by match to protein family HMM PF05128; match to protein family HMM TIGR01620; hypothetical protein 1775286 423368001968 SNSL254_A1808 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040936.1 1774225 R 423368 CDS YP_002040937.1 194444750 complement(1775283..1776680) 1 NC_011080.1 identified by match to protein family HMM PF04317; hypothetical protein 1776680 423368001969 SNSL254_A1809 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040937.1 1775283 R 423368 CDS YP_002040938.1 194446440 complement(1776829..1777143) 1 NC_011080.1 rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase 1777143 423368001970 SNSL254_A1810 Salmonella enterica subsp. enterica serovar Newport str. SL254 thiosulfate:cyanide sulfurtransferase YP_002040938.1 1776829 R 423368 CDS YP_002040939.1 194445768 complement(1777219..1777437) 1 NC_011080.1 identified by match to protein family HMM PF09584; match to protein family HMM TIGR02979; peripheral inner membrane phage-shock protein 1777437 pspD 423368001971 pspD Salmonella enterica subsp. enterica serovar Newport str. SL254 peripheral inner membrane phage-shock protein YP_002040939.1 1777219 R 423368 CDS YP_002040940.1 194445683 complement(1777460..1777819) 1 NC_011080.1 'with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock'; DNA-binding transcriptional activator PspC 1777819 pspC 423368001972 pspC Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator PspC YP_002040940.1 1777460 R 423368 CDS YP_002040941.1 194442706 complement(1777819..1778043) 1 NC_011080.1 'acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding'; phage shock protein B 1778043 pspB 423368001973 pspB Salmonella enterica subsp. enterica serovar Newport str. SL254 phage shock protein B YP_002040941.1 1777819 R 423368 CDS YP_002040942.1 194444367 complement(1778103..1778771) 1 NC_011080.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 1778771 pspA 423368001974 pspA Salmonella enterica subsp. enterica serovar Newport str. SL254 phage shock protein PspA YP_002040942.1 1778103 R 423368 CDS YP_002040943.1 194443707 1778942..1779922 1 NC_011080.1 'transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor'; phage shock protein operon transcriptional activator 1779922 pspF 423368001975 pspF Salmonella enterica subsp. enterica serovar Newport str. SL254 phage shock protein operon transcriptional activator YP_002040943.1 1778942 D 423368 CDS YP_002040944.1 194443730 1780034..1781683 1 NC_011080.1 identified by match to protein family HMM PF00496; peptide transport periplasmic protein SapA 1781683 423368001976 SNSL254_A1816 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptide transport periplasmic protein SapA YP_002040944.1 1780034 D 423368 CDS YP_002040945.1 194443603 1781680..1782645 1 NC_011080.1 identified by match to protein family HMM PF00528; peptide ABC transporter permease protein SapB 1782645 sapB 423368001977 sapB Salmonella enterica subsp. enterica serovar Newport str. SL254 peptide ABC transporter permease protein SapB YP_002040945.1 1781680 D 423368 CDS YP_002040946.1 194446524 1782632..1783522 1 NC_011080.1 identified by match to protein family HMM PF00528; peptide ABC transporter permease protein SapC 1783522 sapC 423368001978 sapC Salmonella enterica subsp. enterica serovar Newport str. SL254 peptide ABC transporter permease protein SapC YP_002040946.1 1782632 D 423368 CDS YP_002040947.1 194446543 1783522..1784514 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein SapD 1784514 sapD 423368001979 sapD Salmonella enterica subsp. enterica serovar Newport str. SL254 peptide ABC transporter ATP-binding protein SapD YP_002040947.1 1783522 D 423368 CDS YP_002040948.1 194446053 1784516..1785322 1 NC_011080.1 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein SapF 1785322 sapF 423368001980 sapF Salmonella enterica subsp. enterica serovar Newport str. SL254 peptide ABC transporter ATP-binding protein SapF YP_002040948.1 1784516 D 423368 CDS YP_002040949.1 194443226 complement(1785338..1786045) 1 NC_011080.1 hypothetical protein 1786045 423368001981 SNSL254_A1821 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040949.1 1785338 R 423368 CDS YP_002040950.2 448967525 complement(1786512..1787885) 1 NC_011080.1 hypothetical protein 1787885 423368001982 SNSL254_A1822 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040950.2 1786512 R 423368 CDS YP_002040951.1 194443888 1788491..1789279 1 NC_011080.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1789279 fabI 423368001983 fabI Salmonella enterica subsp. enterica serovar Newport str. SL254 enoyl-ACP reductase YP_002040951.1 1788491 D 423368 CDS YP_008083625.1 513538102 1789479..1790612 1 NC_011080.1 hypothetical protein 1790612 423368001984 SNSL254_A1824 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083625.1 1789479 D 423368 CDS YP_002040952.1 194444672 1790701..1792635 1 NC_011080.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1792635 rnb 423368001985 rnb Salmonella enterica subsp. enterica serovar Newport str. SL254 exoribonuclease II YP_002040952.1 1790701 D 423368 CDS YP_002040953.1 194444703 1792888..1794879 1 NC_011080.1 c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1794879 423368001986 SNSL254_A1826 Salmonella enterica subsp. enterica serovar Newport str. SL254 RNase II stability modulator YP_002040953.1 1792888 D 423368 CDS YP_002040954.1 194442568 1795001..1795180 1 NC_011080.1 hypothetical protein 1795180 423368001987 SNSL254_A1827 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040954.1 1795001 D 423368 CDS YP_002040955.1 194446259 1795267..1796019 1 NC_011080.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 1796019 423368001988 SNSL254_A1828 Salmonella enterica subsp. enterica serovar Newport str. SL254 DeoR family transcriptional regulator YP_002040955.1 1795267 D 423368 CDS YP_002040956.1 194446130 1796278..1796496 1 NC_011080.1 lipoprotein 1796496 423368001989 SNSL254_A1829 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002040956.1 1796278 D 423368 CDS YP_002040957.1 194445234 complement(1796616..1796942) 1 NC_011080.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1796942 423368001990 SNSL254_A1830 Salmonella enterica subsp. enterica serovar Newport str. SL254 translation initiation factor Sui1 YP_002040957.1 1796616 R 423368 CDS YP_002040958.1 194444544 complement(1796942..1797679) 1 NC_011080.1 identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 1797679 pyrF 423368001991 pyrF Salmonella enterica subsp. enterica serovar Newport str. SL254 orotidine 5'-phosphate decarboxylase YP_002040958.1 1796942 R 423368 CDS YP_002040959.1 194446469 complement(1797870..1799039) 1 NC_011080.1 identified by match to protein family HMM PF07719; hypothetical protein 1799039 423368001992 SNSL254_A1832 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040959.1 1797870 R 423368 CDS YP_002040960.1 194445830 complement(1799046..1799354) 1 NC_011080.1 identified by match to protein family HMM PF06305; hypothetical protein 1799354 423368001993 SNSL254_A1833 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040960.1 1799046 R 423368 CDS YP_002040961.1 194445211 complement(1799504..1800268) 1 NC_011080.1 identified by match to protein family HMM PF01569; phosphatidylglycerophosphatase B 1800268 423368001994 SNSL254_A1834 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphatidylglycerophosphatase B YP_002040961.1 1799504 R 423368 CDS YP_002040962.2 448967526 1800464..1801054 1 NC_011080.1 'catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate'; GTP cyclohydrolase II 1801054 ribA 423368001995 ribA Salmonella enterica subsp. enterica serovar Newport str. SL254 GTP cyclohydrolase II YP_002040962.2 1800464 D 423368 CDS YP_002040963.1 194444825 complement(1801110..1803785) 1 NC_011080.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1803785 acnA 423368001996 acnA Salmonella enterica subsp. enterica serovar Newport str. SL254 aconitate hydratase YP_002040963.1 1801110 R 423368 CDS YP_002040964.1 194444505 complement(1804170..1804340) 1 NC_011080.1 hypothetical protein 1804340 423368001997 SNSL254_A1837 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040964.1 1804170 R 423368 CDS YP_002040965.1 194444652 complement(1804341..1804469) 1 NC_011080.1 hypothetical protein 1804469 423368001998 SNSL254_A1838 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040965.1 1804341 R 423368 CDS YP_002040966.1 194445304 complement(1804762..1805736) 1 NC_011080.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1805736 cysB 423368001999 cysB Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator CysB YP_002040966.1 1804762 R 423368 CDS YP_002040967.1 194444499 1805692..1805856 1 NC_011080.1 identified by glimmer; hypothetical protein 1805856 423368002000 SNSL254_A1839 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040967.1 1805692 D 423368 CDS YP_002040968.1 194442541 complement(1806141..1808738) 1 NC_011080.1 'catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity'; DNA topoisomerase I 1808738 topA 423368002001 topA Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA topoisomerase I YP_002040968.1 1806141 R 423368 CDS YP_002040969.1 194446404 1809141..1809392 1 NC_011080.1 hypothetical protein 1809392 423368002002 SNSL254_A1842 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040969.1 1809141 D 423368 CDS YP_002040970.1 194444766 complement(1809434..1810480) 1 NC_011080.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 1810480 423368002003 SNSL254_A1843 Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic protease YP_002040970.1 1809434 R 423368 CDS YP_002040971.1 194443675 1810718..1811479 1 NC_011080.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 1811479 423368002004 SNSL254_A1844 Salmonella enterica subsp. enterica serovar Newport str. SL254 short chain dehydrogenase YP_002040971.1 1810718 D 423368 CDS YP_002040972.1 194443507 1811476..1812066 1 NC_011080.1 'catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide'; cob(I)yrinic acid a,c-diamide adenosyltransferase 1812066 cobO 423368002005 cobO Salmonella enterica subsp. enterica serovar Newport str. SL254 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_002040972.1 1811476 D 423368 CDS YP_002040973.1 194444498 complement(1812153..1813028) 1 NC_011080.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B 1813028 rluB 423368002006 rluB Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA pseudouridylate synthase B YP_002040973.1 1812153 R 423368 CDS YP_002040974.1 194443555 complement(1813129..1813749) 1 NC_011080.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; hypothetical protein 1813749 423368002007 SNSL254_A1847 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040974.1 1813129 R 423368 CDS YP_002040975.1 194443247 complement(1813757..1814605) 1 NC_011080.1 identified by match to protein family HMM PF02811; phosphoesterase 1814605 423368002008 SNSL254_A1848 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoesterase YP_002040975.1 1813757 R 423368 CDS YP_002040976.1 194442664 1814899..1816461 1 NC_011080.1 'with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine'; anthranilate synthase component I 1816461 trpE 423368002009 trpE Salmonella enterica subsp. enterica serovar Newport str. SL254 anthranilate synthase component I YP_002040976.1 1814899 D 423368 CDS YP_002040977.1 194444295 1816461..1818056 1 NC_011080.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1818056 trpD 423368002010 trpD Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase YP_002040977.1 1816461 D 423368 CDS YP_002040978.1 194444204 1818060..1819418 1 NC_011080.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1819418 423368002011 SNSL254_A1852 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_002040978.1 1818060 D 423368 CDS YP_002040979.1 194446052 1819428..1820621 1 NC_011080.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1820621 trpB 423368002012 trpB Salmonella enterica subsp. enterica serovar Newport str. SL254 tryptophan synthase subunit beta YP_002040979.1 1819428 D 423368 CDS YP_002040980.1 194445504 1820621..1821427 1 NC_011080.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1821427 trpA 423368002013 trpA Salmonella enterica subsp. enterica serovar Newport str. SL254 tryptophan synthase subunit alpha YP_002040980.1 1820621 D 423368 CDS YP_002040981.1 194442723 1821907..1822089 1 NC_011080.1 hypothetical protein 1822089 423368002014 SNSL254_A1855 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040981.1 1821907 D 423368 CDS YP_002040982.1 194446253 1822179..1822682 1 NC_011080.1 identified by match to protein family HMM PF05974; hypothetical protein 1822682 423368002015 SNSL254_A1856 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040982.1 1822179 D 423368 CDS YP_002040983.1 194443430 1822756..1823262 1 NC_011080.1 identified by match to protein family HMM PF05974; hypothetical protein 1823262 423368002016 SNSL254_A1857 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040983.1 1822756 D 423368 CDS YP_002040984.1 194443442 1823282..1824160 1 NC_011080.1 identified by match to protein family HMM PF05067; catalase 1824160 423368002017 SNSL254_A1858 Salmonella enterica subsp. enterica serovar Newport str. SL254 catalase YP_002040984.1 1823282 D 423368 CDS YP_002040985.1 194445417 complement(1824242..1824880) 1 NC_011080.1 receptor for colicin S4; outer membrane protein W 1824880 423368002018 SNSL254_A1859 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein W YP_002040985.1 1824242 R 423368 CDS YP_002040986.1 194445057 1825218..1825622 1 NC_011080.1 identified by match to protein family HMM PF03692; ferredoxin 1825622 423368002019 SNSL254_A1860 Salmonella enterica subsp. enterica serovar Newport str. SL254 ferredoxin YP_002040986.1 1825218 D 423368 CDS YP_002040987.1 194446743 1825648..1826391 1 NC_011080.1 identified by match to protein family HMM PF06790; hypothetical protein 1826391 423368002020 SNSL254_A1861 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040987.1 1825648 D 423368 CDS YP_002040988.1 194442846 1826448..1826987 1 NC_011080.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1826987 ispZ 423368002021 ispZ Salmonella enterica subsp. enterica serovar Newport str. SL254 intracellular septation protein A YP_002040988.1 1826448 D 423368 CDS YP_002040989.1 194442286 1827157..1827549 1 NC_011080.1 YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1827549 423368002022 SNSL254_A1863 Salmonella enterica subsp. enterica serovar Newport str. SL254 acyl-CoA thioester hydrolase YP_002040989.1 1827157 D 423368 CDS YP_002040990.1 194444149 complement(1827609..1828331) 1 NC_011080.1 'membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins'; transporter 1828331 423368002023 SNSL254_A1864 Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_002040990.1 1827609 R 423368 CDS YP_002040991.1 194443487 1828555..1828851 1 NC_011080.1 'unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity'; hypothetical protein 1828851 423368002024 SNSL254_A1865 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040991.1 1828555 D 423368 CDS YP_002040992.1 194445457 complement(1828895..1829032) 1 NC_011080.1 hypothetical protein 1829032 423368002025 SNSL254_A1866 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002040992.1 1828895 R 423368 CDS YP_002040993.1 194444794 1829211..1830671 1 NC_011080.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1830671 cls 423368002026 cls Salmonella enterica subsp. enterica serovar Newport str. SL254 cardiolipin synthetase YP_002040993.1 1829211 D 423368 CDS YP_008083626.1 513538103 1830705..1831034 1 NC_011080.1 dsDNA-mimic protein 1831034 423368002027 SNSL254_A1868 Salmonella enterica subsp. enterica serovar Newport str. SL254 dsDNA-mimic protein YP_008083626.1 1830705 D 423368 CDS YP_002040994.1 194444441 complement(1831082..1831918) 1 NC_011080.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885; Ion transport protein 1831918 423368002028 SNSL254_A1869 Salmonella enterica subsp. enterica serovar Newport str. SL254 Ion transport protein YP_002040994.1 1831082 R 423368 CDS YP_002040995.1 194443685 complement(1831966..1832970) 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein OppF 1832970 oppF 423368002029 oppF Salmonella enterica subsp. enterica serovar Newport str. SL254 oligopeptide ABC transporter ATP-binding protein OppF YP_002040995.1 1831966 R 423368 CDS YP_002040996.1 194443191 complement(1832967..1833974) 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 1833974 oppD 423368002030 oppD Salmonella enterica subsp. enterica serovar Newport str. SL254 oligopeptide ABC transporter ATP-binding protein YP_002040996.1 1832967 R 423368 CDS YP_002040997.1 194442887 complement(1833986..1834894) 1 NC_011080.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease OppC 1834894 oppC 423368002031 oppC Salmonella enterica subsp. enterica serovar Newport str. SL254 oligopeptide ABC transporter permease OppC YP_002040997.1 1833986 R 423368 CDS YP_002040998.1 194442264 complement(1834909..1835829) 1 NC_011080.1 identified by match to protein family HMM PF00528; oligopeptide transporter permease 1835829 oppB 423368002032 oppB Salmonella enterica subsp. enterica serovar Newport str. SL254 oligopeptide transporter permease YP_002040998.1 1834909 R 423368 CDS YP_002040999.1 194446472 complement(1835951..1837582) 1 NC_011080.1 identified by match to protein family HMM PF00496; periplasmic oligopeptide-binding protein 1837582 423368002033 SNSL254_A1874 Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic oligopeptide-binding protein YP_002040999.1 1835951 R 423368 CDS YP_002041000.1 194445834 complement(1838346..1838993) 1 NC_011080.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; hypothetical protein 1838993 423368002034 SNSL254_A1875 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041000.1 1838346 R 423368 CDS YP_002041001.1 194445482 1839470..1842148 1 NC_011080.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1842148 adhE 423368002035 adhE Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_002041001.1 1839470 D 423368 CDS YP_002041002.1 194444867 complement(1842344..1842961) 1 NC_011080.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1842961 tdk 423368002036 tdk Salmonella enterica subsp. enterica serovar Newport str. SL254 thymidine kinase YP_002041002.1 1842344 R 423368 CDS YP_002041003.1 194446267 1843624..1844037 1 NC_011080.1 identified by match to protein family HMM PF00816; global DNA-binding transcriptional dual regulator H-NS 1844037 423368002037 SNSL254_A1878 Salmonella enterica subsp. enterica serovar Newport str. SL254 global DNA-binding transcriptional dual regulator H-NS YP_002041003.1 1843624 D 423368 CDS YP_002041004.1 194442545 complement(1844169..1845077) 1 NC_011080.1 'together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose'; UTP-glucose-1-phosphate uridylyltransferase 1845077 galU 423368002038 galU Salmonella enterica subsp. enterica serovar Newport str. SL254 UTP-glucose-1-phosphate uridylyltransferase YP_002041004.1 1844169 R 423368 CDS YP_002041005.1 194443163 complement(1845280..1846293) 1 NC_011080.1 identified by match to protein family HMM PF00072; response regulator of RpoS 1846293 423368002039 SNSL254_A1880 Salmonella enterica subsp. enterica serovar Newport str. SL254 response regulator of RpoS YP_002041005.1 1845280 R 423368 CDS YP_002041006.1 194443454 complement(1846384..1847289) 1 NC_011080.1 identified by match to protein family HMM PF01734; hypothetical protein 1847289 423368002040 SNSL254_A1881 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041006.1 1846384 R 423368 CDS YP_002041007.1 194443968 1847352..1847858 1 NC_011080.1 identified by match to protein family HMM PF02810; hypothetical protein 1847858 423368002041 SNSL254_A1882 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041007.1 1847352 D 423368 CDS YP_002041008.1 194444216 1847909..1848751 1 NC_011080.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1848751 purU 423368002042 purU Salmonella enterica subsp. enterica serovar Newport str. SL254 formyltetrahydrofolate deformylase YP_002041008.1 1847909 D 423368 CDS YP_002041009.1 194445007 complement(1849905..1851434) 1 NC_011080.1 identified by match to protein family HMM PF08238; hypothetical protein 1851434 423368002049 SNSL254_A1890 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041009.1 1849905 R 423368 CDS YP_002041010.1 194445253 1851470..1851634 1 NC_011080.1 hypothetical protein 1851634 423368002050 SNSL254_A1891 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041010.1 1851470 D 423368 CDS YP_002041011.1 194446028 complement(1851676..1852353) 1 NC_011080.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase subunit gamma 1852353 narI 423368002051 narI Salmonella enterica subsp. enterica serovar Newport str. SL254 respiratory nitrate reductase subunit gamma YP_002041011.1 1851676 R 423368 CDS YP_002041012.1 194446276 complement(1852353..1853063) 1 NC_011080.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 1 1853063 narJ 423368002052 narJ Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrate reductase molybdenum cofactor assembly chaperone 1 YP_002041012.1 1852353 R 423368 CDS YP_002041013.1 194444066 complement(1853060..1854595) 1 NC_011080.1 identified by match to protein family HMM TIGR01660; nitrate reductase 1 subunit beta 1854595 narH 423368002053 narH Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrate reductase 1 subunit beta YP_002041013.1 1853060 R 423368 CDS YP_002041014.1 194445229 complement(1854592..1858335) 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase 1 subunit alpha 1858335 narG 423368002054 narG Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrate reductase 1 subunit alpha YP_002041014.1 1854592 R 423368 CDS YP_002041015.1 194446044 complement(1858723..1860120) 1 NC_011080.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 1 1860120 423368002055 SNSL254_A1896 Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrite extrusion protein 1 YP_002041015.1 1858723 R 423368 CDS YP_002041016.1 194446585 1860461..1862257 1 NC_011080.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarX 1862257 423368002056 SNSL254_A1897 Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrate/nitrite sensor protein NarX YP_002041016.1 1860461 D 423368 CDS YP_002041017.1 194442715 1862250..1862900 1 NC_011080.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1862900 423368002057 SNSL254_A1898 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator NarL YP_002041017.1 1862250 D 423368 CDS YP_002041018.1 194442889 complement(1862901..1864430) 1 NC_011080.1 hypothetical protein 1864430 423368002058 SNSL254_A1899 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041018.1 1862901 R 423368 CDS YP_002041019.1 194444372 1864502..1864855 1 NC_011080.1 identified by match to protein family HMM PF02635; hypothetical protein 1864855 423368002059 SNSL254_A1900 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041019.1 1864502 D 423368 CDS YP_002041020.1 194444165 complement(1864935..1865165) 1 NC_011080.1 in Escherichia coli this protein ly regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator 1865165 chaB 423368002060 chaB Salmonella enterica subsp. enterica serovar Newport str. SL254 cation transport regulator YP_002041020.1 1864935 R 423368 CDS YP_002041021.1 194444556 1865432..1866532 1 NC_011080.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00846; calcium/sodium:proton antiporter 1866532 423368002061 SNSL254_A1902 Salmonella enterica subsp. enterica serovar Newport str. SL254 calcium/sodium:proton antiporter YP_002041021.1 1865432 D 423368 CDS YP_002041022.1 194446013 complement(1866586..1867440) 1 NC_011080.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1867440 kdsA 423368002062 kdsA Salmonella enterica subsp. enterica serovar Newport str. SL254 2-dehydro-3-deoxyphosphooctonate aldolase YP_002041022.1 1866586 R 423368 CDS YP_002041023.1 194444430 complement(1867478..1868287) 1 NC_011080.1 transcriptional regulator 1868287 sirB1 423368002063 sirB1 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002041023.1 1867478 R 423368 CDS YP_002041024.1 194443817 complement(1868291..1868668) 1 NC_011080.1 identified by match to protein family HMM PF04247; transcriptional regulator 1868668 423368002064 SNSL254_A1905 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002041024.1 1868291 R 423368 CDS YP_002041025.1 194443667 complement(1868677..1869510) 1 NC_011080.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1869510 hemK 423368002065 hemK Salmonella enterica subsp. enterica serovar Newport str. SL254 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_002041025.1 1868677 R 423368 CDS YP_002041026.1 194443280 complement(1869510..1870592) 1 NC_011080.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1870592 prfA 423368002066 prfA Salmonella enterica subsp. enterica serovar Newport str. SL254 peptide chain release factor 1 YP_002041026.1 1869510 R 423368 CDS YP_002041027.1 194442436 complement(1870633..1871889) 1 NC_011080.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1871889 hemA 423368002067 hemA Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamyl-tRNA reductase YP_002041027.1 1870633 R 423368 CDS YP_002041028.1 194446663 complement(1872057..1872185) 1 NC_011080.1 identified by glimmer; hypothetical protein 1872185 423368002068 SNSL254_A1909 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041028.1 1872057 R 423368 CDS YP_002041029.1 194445027 1872203..1872826 1 NC_011080.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1872826 lolB 423368002069 lolB Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein LolB YP_002041029.1 1872203 D 423368 CDS YP_002041030.1 194443768 1872826..1873674 1 NC_011080.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1873674 ipk 423368002070 ipk Salmonella enterica subsp. enterica serovar Newport str. SL254 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_002041030.1 1872826 D 423368 CDS YP_002041031.1 194444521 complement(1873671..1873841) 1 NC_011080.1 identified by glimmer; hypothetical protein 1873841 423368002071 SNSL254_A1912 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041031.1 1873671 R 423368 CDS YP_002041032.1 194443225 1873940..1874887 1 NC_011080.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1874887 prs 423368002072 prs Salmonella enterica subsp. enterica serovar Newport str. SL254 ribose-phosphate pyrophosphokinase YP_002041032.1 1873940 D 423368 CDS YP_002041033.1 194442347 1875012..1876697 1 NC_011080.1 role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 1876697 ychM 423368002073 ychM Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfate transporter YchM YP_002041033.1 1875012 D 423368 CDS YP_002041034.1 194444097 complement(1876742..1877020) 1 NC_011080.1 'YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function'; hypothetical protein 1877020 423368002074 SNSL254_A1915 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041034.1 1876742 R 423368 CDS YP_002041035.1 194444828 1877296..1877880 1 NC_011080.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1877880 pth 423368002075 pth Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidyl-tRNA hydrolase YP_002041035.1 1877296 D 423368 CDS YP_002041036.1 194446679 1877997..1879088 1 NC_011080.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1879088 engD 423368002076 engD Salmonella enterica subsp. enterica serovar Newport str. SL254 GTP-dependent nucleic acid-binding protein EngD YP_002041036.1 1877997 D 423368 CDS YP_002041037.1 194446181 complement(1879104..1879229) 1 NC_011080.1 identified by glimmer; hypothetical protein 1879229 423368002077 SNSL254_A1918 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041037.1 1879104 R 423368 CDS YP_002041038.1 194442842 complement(1879879..1880004) 1 NC_011080.1 identified by glimmer; hypothetical protein 1880004 423368002078 SNSL254_A1919 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041038.1 1879879 R 423368 CDS YP_002041039.1 194442839 1880185..1880466 1 NC_011080.1 identified by glimmer; hypothetical protein 1880466 423368002079 SNSL254_A1920 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041039.1 1880185 D 423368 CDS YP_002041040.1 194442368 1880724..1880960 1 NC_011080.1 hypothetical protein 1880960 423368002080 SNSL254_A1921 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041040.1 1880724 D 423368 CDS YP_002041041.1 194444132 complement(1881433..1882698) 1 NC_011080.1 hypothetical protein 1882698 423368002081 SNSL254_A1922 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041041.1 1881433 R 423368 CDS YP_002041042.1 194445395 complement(1882969..1883097) 1 NC_011080.1 identified by glimmer; hypothetical protein 1883097 423368002082 SNSL254_A1923 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041042.1 1882969 R 423368 CDS YP_002041043.1 194444862 1883166..1884311 1 NC_011080.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; hydrogenase-1 small chain 1884311 423368002083 SNSL254_A1924 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase-1 small chain YP_002041043.1 1883166 D 423368 CDS YP_002041044.1 194445398 1884308..1886101 1 NC_011080.1 involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1886101 423368002084 SNSL254_A1925 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 1 large subunit YP_002041044.1 1884308 D 423368 CDS YP_002041045.1 194446611 1886120..1886851 1 NC_011080.1 identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; hydrogenase 1 b-type cytochrome subunit 1886851 cybH 423368002085 cybH Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 1 b-type cytochrome subunit YP_002041045.1 1886120 D 423368 CDS YP_002041046.1 194442757 1886848..1887444 1 NC_011080.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1887444 hybD 423368002086 hybD Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 1 maturation protease YP_002041046.1 1886848 D 423368 CDS YP_002041047.1 194442274 1887434..1887838 1 NC_011080.1 involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1887838 423368002087 SNSL254_A1928 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase-1 operon protein HyaE YP_002041047.1 1887434 D 423368 CDS YP_002041048.1 194442919 1887835..1888683 1 NC_011080.1 identified by match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF 1888683 423368002088 SNSL254_A1929 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase-1 operon protein HyaF YP_002041048.1 1887835 D 423368 CDS YP_002041049.1 194443930 1888758..1890302 1 NC_011080.1 identified by match to protein family HMM PF01654; cytochrome D ubiquinol oxidase subunit 1 1890302 423368002089 SNSL254_A1930 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome D ubiquinol oxidase subunit 1 YP_002041049.1 1888758 D 423368 CDS YP_002041050.1 194444685 1890314..1891450 1 NC_011080.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 1891450 cydB 423368002090 cydB Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome D ubiquinol oxidase subunit II YP_002041050.1 1890314 D 423368 CDS YP_002041051.1 194445348 1891947..1893221 1 NC_011080.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase 1893221 423368002091 SNSL254_A1932 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate dehydrogenase YP_002041051.1 1891947 D 423368 CDS YP_002041052.1 194445992 complement(1893239..1893355) 1 NC_011080.1 identified by glimmer; hypothetical protein 1893355 423368002092 SNSL254_A1933 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041052.1 1893239 R 423368 CDS YP_002041053.1 194444918 1893435..1895147 1 NC_011080.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1895147 treA 423368002093 treA Salmonella enterica subsp. enterica serovar Newport str. SL254 trehalase YP_002041053.1 1893435 D 423368 CDS YP_002041054.1 194445413 complement(1895210..1895470) 1 NC_011080.1 identified by match to protein family HMM PF04226; transglycosylase associated protein 1895470 423368002094 SNSL254_A1935 Salmonella enterica subsp. enterica serovar Newport str. SL254 transglycosylase associated protein YP_002041054.1 1895210 R 423368 CDS YP_002041055.1 194443537 1895633..1896367 1 NC_011080.1 identified by match to protein family HMM PF07238; match to protein family HMM PF07317; hypothetical protein 1896367 423368002095 SNSL254_A1936 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041055.1 1895633 D 423368 CDS YP_008083627.1 513538104 complement(1896381..1896992) 1 NC_011080.1 membrane-bound lytic murein transglycosylase E 1896992 423368002096 SNSL254_A1937 Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane-bound lytic murein transglycosylase E YP_008083627.1 1896381 R 423368 CDS YP_002041056.1 194442275 1897163..1898077 1 NC_011080.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1898077 ldcA 423368002097 ldcA Salmonella enterica subsp. enterica serovar Newport str. SL254 L,D-carboxypeptidase A YP_002041056.1 1897163 D 423368 CDS YP_002041057.1 194443047 1898174..1899907 1 NC_011080.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1899907 423368002098 SNSL254_A1939 Salmonella enterica subsp. enterica serovar Newport str. SL254 potassium/proton antiporter YP_002041057.1 1898174 D 423368 CDS YP_002041058.1 194442850 complement(1899969..1901039) 1 NC_011080.1 'catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA'; alanine racemase 1901039 dadX 423368002099 dadX Salmonella enterica subsp. enterica serovar Newport str. SL254 alanine racemase YP_002041058.1 1899969 R 423368 CDS YP_002041059.1 194445671 complement(1901053..1902351) 1 NC_011080.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 1902351 423368002100 SNSL254_A1941 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-amino acid dehydrogenase small subunit YP_002041059.1 1901053 R 423368 CDS YP_002041060.1 194446750 1902674..1904206 1 NC_011080.1 identified by match to protein family HMM PF04293; SpoVR family protein 1904206 423368002101 SNSL254_A1942 Salmonella enterica subsp. enterica serovar Newport str. SL254 SpoVR family protein YP_002041060.1 1902674 D 423368 CDS YP_002041061.1 194444942 complement(1904253..1904972) 1 NC_011080.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1904972 fadR 423368002102 fadR Salmonella enterica subsp. enterica serovar Newport str. SL254 fatty acid metabolism regulator YP_002041061.1 1904253 R 423368 CDS YP_002041062.1 194444345 1905192..1906736 1 NC_011080.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1906736 nhaB 423368002103 nhaB Salmonella enterica subsp. enterica serovar Newport str. SL254 sodium/proton antiporter YP_002041062.1 1905192 D 423368 CDS YP_002041063.1 194442410 1906878..1907408 1 NC_011080.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1907408 423368002104 SNSL254_A1945 Salmonella enterica subsp. enterica serovar Newport str. SL254 disulfide bond formation protein B YP_002041063.1 1906878 D 423368 CDS YP_002041064.1 194443269 1907518..1907859 1 NC_011080.1 identified by match to protein family HMM PF09313; tellurite resistance protein TehB 1907859 423368002105 SNSL254_A1946 Salmonella enterica subsp. enterica serovar Newport str. SL254 tellurite resistance protein TehB YP_002041064.1 1907518 D 423368 CDS YP_002041065.1 194445962 complement(1907931..1908104) 1 NC_011080.1 identified by match to protein family HMM PF08178; hypothetical protein 1908104 423368002106 SNSL254_A1947 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041065.1 1907931 R 423368 CDS YP_002041066.1 194445721 1908117..1908233 1 NC_011080.1 identified by glimmer; hypothetical protein 1908233 423368002107 SNSL254_A1948 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041066.1 1908117 D 423368 CDS YP_002041067.1 194446379 complement(1908296..1908433) 1 NC_011080.1 hypothetical protein 1908433 423368002108 SNSL254_A1949 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041067.1 1908296 R 423368 CDS YP_002041068.1 194444573 complement(1908785..1909246) 1 NC_011080.1 identified by match to protein family HMM PF03692; hypothetical protein 1909246 423368002109 SNSL254_A1950 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041068.1 1908785 R 423368 CDS YP_002041069.1 194445087 complement(1909324..1909983) 1 NC_011080.1 identified by match to protein family HMM PF01557; hypothetical protein 1909983 423368002110 SNSL254_A1951 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041069.1 1909324 R 423368 CDS YP_002041070.2 448967527 complement(1910033..1910365) 1 NC_011080.1 hypothetical protein 1910365 423368002111 SNSL254_A1953 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041070.2 1910033 R 423368 CDS YP_002041071.1 194444388 1910452..1911159 1 NC_011080.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1911159 minC 423368002112 minC Salmonella enterica subsp. enterica serovar Newport str. SL254 septum formation inhibitor YP_002041071.1 1910452 D 423368 CDS YP_002041072.1 194444091 1911183..1911995 1 NC_011080.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1911995 minD 423368002113 minD Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division inhibitor MinD YP_002041072.1 1911183 D 423368 CDS YP_002041073.1 194443372 1911999..1912265 1 NC_011080.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1912265 minE 423368002114 minE Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division topological specificity factor MinE YP_002041073.1 1911999 D 423368 CDS YP_002041074.1 194445618 complement(1912387..1913514) 1 NC_011080.1 identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D 1913514 rnd 423368002115 rnd Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease D YP_002041074.1 1912387 R 423368 CDS YP_002041075.1 194444947 complement(1913587..1915272) 1 NC_011080.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1915272 423368002117 SNSL254_A1958 Salmonella enterica subsp. enterica serovar Newport str. SL254 long-chain-fatty-acid--CoA ligase YP_002041075.1 1913587 R 423368 CDS YP_002041076.1 194446640 complement(1915477..1916058) 1 NC_011080.1 identified by match to protein family HMM PF03843; match to protein family HMM TIGR00752; outer membrane protein Slp 1916058 slp 423368002118 slp Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein Slp YP_002041076.1 1915477 R 423368 CDS YP_002041077.1 194446003 complement(1916130..1916825) 1 NC_011080.1 identified by match to protein family HMM PF00814; M22 peptidase-like protein YeaZ 1916825 423368002119 SNSL254_A1960 Salmonella enterica subsp. enterica serovar Newport str. SL254 M22 peptidase-like protein YeaZ YP_002041077.1 1916130 R 423368 CDS YP_002041078.1 194445825 complement(1916883..1918793) 1 NC_011080.1 hypothetical protein 1918793 423368002120 SNSL254_A1961 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041078.1 1916883 R 423368 CDS YP_002041079.1 194442849 1918925..1919269 1 NC_011080.1 identified by match to protein family HMM PF01042; endoribonuclease L-PSP family protein 1919269 423368002121 SNSL254_A1962 Salmonella enterica subsp. enterica serovar Newport str. SL254 endoribonuclease L-PSP family protein YP_002041079.1 1918925 D 423368 CDS YP_002041080.1 194442221 complement(1919275..1919454) 1 NC_011080.1 identified by match to protein family HMM PF03701; hypothetical protein 1919454 423368002122 SNSL254_A1963 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041080.1 1919275 R 423368 CDS YP_002041081.1 194444492 1919535..1920899 1 NC_011080.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; aminodeoxychorismate synthase, component I 1920899 pabB 423368002123 pabB Salmonella enterica subsp. enterica serovar Newport str. SL254 aminodeoxychorismate synthase, component I YP_002041081.1 1919535 D 423368 CDS YP_002041082.1 194443608 1920903..1921481 1 NC_011080.1 identified by match to protein family HMM PF00293; hypothetical protein 1921481 423368002124 SNSL254_A1965 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041082.1 1920903 D 423368 CDS YP_002041083.1 194442772 1921745..1923109 1 NC_011080.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 1923109 423368002125 SNSL254_A1966 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-serine ammonia-lyase YP_002041083.1 1921745 D 423368 CDS YP_002041084.1 194442294 1923247..1924848 1 NC_011080.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 1924848 423368002126 SNSL254_A1967 Salmonella enterica subsp. enterica serovar Newport str. SL254 cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002041084.1 1923247 D 423368 CDS YP_002041085.1 194446444 complement(1924870..1926429) 1 NC_011080.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741; TerC family/CBS/transporter associated membrane protein 1926429 423368002127 SNSL254_A1968 Salmonella enterica subsp. enterica serovar Newport str. SL254 TerC family/CBS/transporter associated membrane protein YP_002041085.1 1924870 R 423368 CDS YP_002041086.1 194446658 1926902..1927870 1 NC_011080.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; match to protein family HMM TIGR00854; PTS system mannose-specific transporter subunit IIAB 1927870 manX 423368002128 manX Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system mannose-specific transporter subunit IIAB YP_002041086.1 1926902 D 423368 CDS YP_002041087.1 194445120 1927923..1928723 1 NC_011080.1 identified by match to protein family HMM PF03609; match to protein family HMM TIGR00822; PTS system mannose-specific transporter subunit IIC 1928723 manY 423368002129 manY Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system mannose-specific transporter subunit IIC YP_002041087.1 1927923 D 423368 CDS YP_002041088.1 194444720 1928736..1929587 1 NC_011080.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1929587 manZ 423368002130 manZ Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system mannose-specific transporter subunit IID YP_002041088.1 1928736 D 423368 CDS YP_002041089.1 194445030 1929645..1930103 1 NC_011080.1 identified by match to protein family HMM PF06173; hypothetical protein 1930103 423368002131 SNSL254_A1972 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041089.1 1929645 D 423368 CDS YP_002041090.1 194443708 1930513..1931079 1 NC_011080.1 identified by match to protein family HMM PF02659; membrane protein YebN 1931079 423368002132 SNSL254_A1974 Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane protein YebN YP_002041090.1 1930513 D 423368 CDS YP_002041091.1 194444040 complement(1931076..1931885) 1 NC_011080.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase 1931885 rrmA 423368002133 rrmA Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA methyltransferase YP_002041091.1 1931076 R 423368 CDS YP_002041092.1 194442429 complement(1931951..1933696) 1 NC_011080.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI 1933696 423368002134 SNSL254_A1976 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidoglycan synthetase FtsI YP_002041092.1 1931951 R 423368 CDS YP_002041093.1 194446619 complement(1933916..1934125) 1 NC_011080.1 identified by match to protein family HMM PF00313; cold shock-like protein CspC 1934125 cspC 423368002135 cspC Salmonella enterica subsp. enterica serovar Newport str. SL254 cold shock-like protein CspC YP_002041093.1 1933916 R 423368 CDS YP_002041094.1 194445977 complement(1934930..1935163) 1 NC_011080.1 hypothetical protein 1935163 423368002136 SNSL254_A1978 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041094.1 1934930 R 423368 CDS YP_002041095.1 194445552 complement(1935288..1935431) 1 NC_011080.1 hypothetical protein 1935431 423368002137 SNSL254_A1979 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041095.1 1935288 R 423368 CDS YP_002041096.1 194445034 1935589..1935828 1 NC_011080.1 hypothetical protein 1935828 423368002138 SNSL254_A1980 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041096.1 1935589 D 423368 CDS YP_002041097.1 194444760 complement(1936040..1936831) 1 NC_011080.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator KdgR 1936831 423368002139 SNSL254_A1981 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator KdgR YP_002041097.1 1936040 R 423368 CDS YP_008083628.1 513538105 1937007..1938380 1 NC_011080.1 transporter 1938380 423368002140 SNSL254_A1982 Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_008083628.1 1937007 D 423368 CDS YP_002041098.1 194443696 complement(1938428..1939309) 1 NC_011080.1 metalloprotease; heat shock protein HtpX 1939309 423368002141 SNSL254_A1983 Salmonella enterica subsp. enterica serovar Newport str. SL254 heat shock protein HtpX YP_002041098.1 1938428 R 423368 CDS YP_002041099.1 194442997 complement(1939502..1941550) 1 NC_011080.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1941550 prc 423368002142 prc Salmonella enterica subsp. enterica serovar Newport str. SL254 carboxy-terminal protease YP_002041099.1 1939502 R 423368 CDS YP_002041100.1 194442744 complement(1941570..1942256) 1 NC_011080.1 affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 1942256 proQ 423368002143 proQ Salmonella enterica subsp. enterica serovar Newport str. SL254 solute/DNA competence effector YP_002041100.1 1941570 R 423368 CDS YP_002041101.2 448967528 complement(1942354..1942938) 1 NC_011080.1 identified by match to protein family HMM PF01590; nucleotide-binding protein 1942938 423368002144 SNSL254_A1986 Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleotide-binding protein YP_002041101.2 1942354 R 423368 CDS YP_002041102.1 194444095 1942980..1944263 1 NC_011080.1 identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; integral membrane protein PqiA family 1944263 423368002145 SNSL254_A1987 Salmonella enterica subsp. enterica serovar Newport str. SL254 integral membrane protein PqiA family YP_002041102.1 1942980 D 423368 CDS YP_002041103.1 194445397 1944226..1946865 1 NC_011080.1 identified by match to protein family HMM PF02470; mce-like protein 1946865 423368002146 SNSL254_A1988 Salmonella enterica subsp. enterica serovar Newport str. SL254 mce-like protein YP_002041103.1 1944226 D 423368 CDS YP_002041104.1 194444109 1946841..1948382 1 NC_011080.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1948382 yebU 423368002147 yebU Salmonella enterica subsp. enterica serovar Newport str. SL254 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_002041104.1 1946841 D 423368 CDS YP_002041105.1 194443607 1948497..1948736 1 NC_011080.1 identified by match to protein family HMM PF07351; hypothetical protein 1948736 423368002148 SNSL254_A1990 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041105.1 1948497 D 423368 CDS YP_002041106.1 194445414 1948904..1949038 1 NC_011080.1 identified by match to protein family HMM PF07358; hypothetical protein 1949038 423368002149 SNSL254_A1991 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041106.1 1948904 D 423368 CDS YP_002041107.1 194444920 complement(1949057..1949707) 1 NC_011080.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 1949707 pphA 423368002150 pphA Salmonella enterica subsp. enterica serovar Newport str. SL254 serine/threonine protein phosphatase 1 YP_002041107.1 1949057 R 423368 CDS YP_002041108.1 194446746 complement(1949725..1949898) 1 NC_011080.1 identified by glimmer; hypothetical protein 1949898 423368002151 SNSL254_A1993 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041108.1 1949725 R 423368 CDS YP_002041109.1 194446243 complement(1949931..1950095) 1 NC_011080.1 hypothetical protein 1950095 423368002152 SNSL254_A1994 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041109.1 1949931 R 423368 CDS YP_002041110.1 194443382 complement(1950157..1950306) 1 NC_011080.1 hypothetical protein 1950306 423368002153 SNSL254_A1995 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041110.1 1950157 R 423368 CDS YP_002041111.1 194443212 complement(1950380..1951102) 1 NC_011080.1 identified by match to protein family HMM PF05364; match to protein family HMM PF07487; guanine nucleotide exchange factor SopE 1951102 423368002154 SNSL254_A1996 Salmonella enterica subsp. enterica serovar Newport str. SL254 guanine nucleotide exchange factor SopE YP_002041111.1 1950380 R 423368 CDS YP_002041112.1 194443857 1951368..1951514 1 NC_011080.1 identified by glimmer; hypothetical protein 1951514 423368002155 SNSL254_A1997 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041112.1 1951368 D 423368 CDS YP_002041113.1 194444331 1951801..1952181 1 NC_011080.1 identified by match to protein family HMM PF07166; hypothetical protein 1952181 423368002156 SNSL254_A1998 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041113.1 1951801 D 423368 CDS YP_002041114.1 194446001 1952497..1952973 1 NC_011080.1 hypothetical protein 1952973 423368002157 SNSL254_A1999 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041114.1 1952497 D 423368 CDS YP_002041115.1 194446651 complement(1953453..1953584) 1 NC_011080.1 identified by glimmer; hypothetical protein 1953584 423368002158 SNSL254_A2000 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041115.1 1953453 R 423368 CDS YP_002041116.1 194442927 1953695..1953811 1 NC_011080.1 identified by glimmer; hypothetical protein 1953811 423368002159 SNSL254_A2001 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041116.1 1953695 D 423368 CDS YP_002041117.1 194445709 complement(1953847..1953975) 1 NC_011080.1 identified by glimmer; hypothetical protein 1953975 423368002160 SNSL254_A2002 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041117.1 1953847 R 423368 CDS YP_002041118.1 194444056 1954271..1954444 1 NC_011080.1 identified by glimmer; hypothetical protein 1954444 423368002161 SNSL254_A2003 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041118.1 1954271 D 423368 CDS YP_002041119.1 194445650 1955463..1955612 1 NC_011080.1 identified by glimmer; hypothetical protein 1955612 423368002162 SNSL254_A2005 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041119.1 1955463 D 423368 CDS YP_002041120.1 194446368 1955941..1956951 1 NC_011080.1 identified by match to protein family HMM PF01757; O-actetyl transferase related protein 1956951 423368002163 SNSL254_A2006 Salmonella enterica subsp. enterica serovar Newport str. SL254 O-actetyl transferase related protein YP_002041120.1 1955941 D 423368 CDS YP_002041121.1 194445343 complement(1958473..1958589) 1 NC_011080.1 identified by glimmer; hypothetical protein 1958589 423368002165 SNSL254_A2008 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041121.1 1958473 R 423368 CDS YP_002041122.1 194446329 complement(1958951..1959085) 1 NC_011080.1 identified by glimmer; hypothetical protein 1959085 423368002166 SNSL254_A2010 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041122.1 1958951 R 423368 CDS YP_002041123.1 194443346 complement(1960572..1960766) 1 NC_011080.1 hypothetical protein 1960766 423368002168 SNSL254_A2012 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041123.1 1960572 R 423368 CDS YP_002041124.1 194443786 1960989..1961135 1 NC_011080.1 hypothetical protein 1961135 423368002169 SNSL254_A2013 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041124.1 1960989 D 423368 CDS YP_002041125.1 194446100 1962851..1963219 1 NC_011080.1 hypothetical protein 1963219 423368002171 SNSL254_A2016 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041125.1 1962851 D 423368 CDS YP_002041126.1 194442453 complement(1963696..1963896) 1 NC_011080.1 identified by glimmer; hypothetical protein 1963896 423368002172 SNSL254_A2017 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041126.1 1963696 R 423368 CDS YP_002041127.1 194442542 1964514..1965428 1 NC_011080.1 identified by match to protein family HMM PF00892; hypothetical protein 1965428 423368002173 SNSL254_A2018 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041127.1 1964514 D 423368 CDS YP_002041128.1 194446077 1965561..1965719 1 NC_011080.1 hypothetical protein 1965719 423368002174 SNSL254_A2019 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041128.1 1965561 D 423368 CDS YP_002041129.1 194442392 1965723..1966343 1 NC_011080.1 hypothetical protein 1966343 423368002175 SNSL254_A2020 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041129.1 1965723 D 423368 CDS YP_002041130.1 194443023 1966831..1966977 1 NC_011080.1 hypothetical protein 1966977 423368002176 SNSL254_A2021 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041130.1 1966831 D 423368 CDS YP_002041131.1 194443388 complement(1967491..1967616) 1 NC_011080.1 arsenical pump membrane protein 1967616 423368002177 SNSL254_A2022 Salmonella enterica subsp. enterica serovar Newport str. SL254 arsenical pump membrane protein YP_002041131.1 1967491 R 423368 CDS YP_002041132.1 194443424 complement(1968482..1969363) 1 NC_011080.1 identified by match to protein family HMM PF01661; match to protein family HMM PF02413; tail fiber assembly protein 1969363 423368002178 SNSL254_A2023 Salmonella enterica subsp. enterica serovar Newport str. SL254 tail fiber assembly protein YP_002041132.1 1968482 R 423368 CDS YP_002041133.1 194444055 complement(1969518..1969781) 1 NC_011080.1 identified by match to protein family HMM PF07278; gifsy-2 prophage protein 1969781 423368002179 SNSL254_A2024 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-2 prophage protein YP_002041133.1 1969518 R 423368 CDS YP_002041134.1 194444976 1969836..1970024 1 NC_011080.1 identified by glimmer; hypothetical protein 1970024 423368002180 SNSL254_A2025 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041134.1 1969836 D 423368 CDS YP_002041135.1 194445525 1970089..1970256 1 NC_011080.1 hypothetical protein 1970256 423368002181 SNSL254_A2026 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041135.1 1970089 D 423368 CDS YP_002041136.1 194444310 1971521..1972468 1 NC_011080.1 exodeoxyribonuclease 8 1972468 423368002183 SNSL254_A2028 Salmonella enterica subsp. enterica serovar Newport str. SL254 exodeoxyribonuclease 8 YP_002041136.1 1971521 D 423368 CDS YP_002041137.1 194446257 1972465..1973544 1 NC_011080.1 identified by match to protein family HMM PF00589; match to protein family HMM PF09003; phage integrase 1973544 423368002184 SNSL254_A2029 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage integrase YP_002041137.1 1972465 D 423368 CDS YP_002041138.1 194446169 complement(1973917..1974270) 1 NC_011080.1 hypothetical protein 1974270 423368002187 SNSL254_A2032 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041138.1 1973917 R 423368 CDS YP_002041139.1 194445516 complement(1974287..1975162) 1 NC_011080.1 identified by match to protein family HMM PF05425; copper resistance protein D 1975162 423368002188 SNSL254_A2033 Salmonella enterica subsp. enterica serovar Newport str. SL254 copper resistance protein D YP_002041139.1 1974287 R 423368 CDS YP_002041140.1 194444849 complement(1975163..1975537) 1 NC_011080.1 identified by match to protein family HMM PF04234; hypothetical protein 1975537 423368002189 SNSL254_A2034 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041140.1 1975163 R 423368 CDS YP_002041141.1 194443687 1975675..1975905 1 NC_011080.1 identified by match to protein family HMM PF06440; DNA polymerase III subunit theta 1975905 423368002190 SNSL254_A2035 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase III subunit theta YP_002041141.1 1975675 D 423368 CDS YP_002041142.1 194443553 1976013..1976669 1 NC_011080.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1976669 423368002191 SNSL254_A2036 Salmonella enterica subsp. enterica serovar Newport str. SL254 carbon-nitrogen family hydrolase YP_002041142.1 1976013 D 423368 CDS YP_002041143.1 194442926 1976693..1977391 1 NC_011080.1 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1977391 423368002192 SNSL254_A2037 Salmonella enterica subsp. enterica serovar Newport str. SL254 exodeoxyribonuclease X YP_002041143.1 1976693 D 423368 CDS YP_002041144.1 194446810 complement(1977428..1979479) 1 NC_011080.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 1979479 423368002193 SNSL254_A2038 Salmonella enterica subsp. enterica serovar Newport str. SL254 protease 2 YP_002041144.1 1977428 R 423368 CDS YP_002041145.1 194444964 complement(1979693..1980352) 1 NC_011080.1 identified by match to protein family HMM PF04391; hypothetical protein 1980352 423368002194 SNSL254_A2039 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041145.1 1979693 R 423368 CDS YP_002041146.1 194445643 complement(1980446..1980799) 1 NC_011080.1 secreted protein; unknown function; hypothetical protein 1980799 423368002195 SNSL254_A2040 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041146.1 1980446 R 423368 CDS YP_002041147.1 194444152 complement(1980867..1981157) 1 NC_011080.1 identified by match to protein family HMM PF07130; DNA damage-inducible protein YebG 1981157 423368002196 SNSL254_A2041 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA damage-inducible protein YebG YP_002041147.1 1980867 R 423368 CDS YP_002041148.1 194444508 1981288..1982466 1 NC_011080.1 'non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis'; phosphoribosylglycinamide formyltransferase 2 1982466 purT 423368002197 purT Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoribosylglycinamide formyltransferase 2 YP_002041148.1 1981288 D 423368 CDS YP_002041149.1 194443661 complement(1982566..1983207) 1 NC_011080.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1983207 eda 423368002198 eda Salmonella enterica subsp. enterica serovar Newport str. SL254 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_002041149.1 1982566 R 423368 CDS YP_002041150.1 194444328 complement(1983245..1985056) 1 NC_011080.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1985056 edd 423368002199 edd Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphogluconate dehydratase YP_002041150.1 1983245 R 423368 CDS YP_002041151.1 194446757 complement(1985291..1986766) 1 NC_011080.1 'catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate'; glucose-6-phosphate 1-dehydrogenase 1986766 zwf 423368002200 zwf Salmonella enterica subsp. enterica serovar Newport str. SL254 glucose-6-phosphate 1-dehydrogenase YP_002041151.1 1985291 R 423368 CDS YP_002041152.1 194442494 1987108..1987977 1 NC_011080.1 'Represses the expression of the zwf, eda, glp and gap'; DNA-binding transcriptional regulator HexR 1987977 423368002201 SNSL254_A2046 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator HexR YP_002041152.1 1987108 D 423368 CDS YP_002041153.1 194445191 1988101..1989543 1 NC_011080.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1989543 pykA 423368002202 pykA Salmonella enterica subsp. enterica serovar Newport str. SL254 pyruvate kinase YP_002041153.1 1988101 D 423368 CDS YP_002041154.1 194443809 complement(1989616..1990587) 1 NC_011080.1 'Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA'; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1990587 msbB 423368002203 msbB Salmonella enterica subsp. enterica serovar Newport str. SL254 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_002041154.1 1989616 R 423368 CDS YP_002041155.1 194446438 complement(1990704..1992023) 1 NC_011080.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; match to protein family HMM PF04225; match to protein family HMM PF08525; hypothetical protein 1992023 423368002204 SNSL254_A2049 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041155.1 1990704 R 423368 CDS YP_002041156.1 194444799 complement(1992039..1992983) 1 NC_011080.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein 1992983 znuA 423368002205 znuA Salmonella enterica subsp. enterica serovar Newport str. SL254 high-affinity zinc transporter periplasmic protein YP_002041156.1 1992039 R 423368 CDS YP_002041157.1 194446764 1993062..1993817 1 NC_011080.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 1993817 znuC 423368002206 znuC Salmonella enterica subsp. enterica serovar Newport str. SL254 high-affinity zinc transporter ATPase YP_002041157.1 1993062 D 423368 CDS YP_002041158.1 194446294 1993814..1994599 1 NC_011080.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 1994599 znuB 423368002207 znuB Salmonella enterica subsp. enterica serovar Newport str. SL254 high-affinity zinc transporter membrane protein YP_002041158.1 1993814 D 423368 CDS YP_002041159.1 194443149 complement(1994678..1995688) 1 NC_011080.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1995688 ruvB 423368002208 ruvB Salmonella enterica subsp. enterica serovar Newport str. SL254 Holliday junction DNA helicase RuvB YP_002041159.1 1994678 R 423368 CDS YP_002041160.1 194446097 complement(1995697..1996308) 1 NC_011080.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; holliday junction DNA helicase RuvA 1996308 ruvA 423368002209 ruvA Salmonella enterica subsp. enterica serovar Newport str. SL254 holliday junction DNA helicase RuvA YP_002041160.1 1995697 R 423368 CDS YP_002041161.1 194443556 complement(1996668..1997360) 1 NC_011080.1 hypothetical protein 1997360 423368002210 SNSL254_A2055 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041161.1 1996668 R 423368 CDS YP_002041162.1 194444127 1997569..1998168 1 NC_011080.1 identified by match to protein family HMM PF06520; hypothetical protein 1998168 423368002211 SNSL254_A2056 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041162.1 1997569 D 423368 CDS YP_002041163.1 194444872 complement(1998170..1998691) 1 NC_011080.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; holliday junction resolvase 1998691 ruvC 423368002212 ruvC Salmonella enterica subsp. enterica serovar Newport str. SL254 holliday junction resolvase YP_002041163.1 1998170 R 423368 CDS YP_002041164.1 194444208 complement(1998728..1999468) 1 NC_011080.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1999468 423368002213 SNSL254_A2058 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041164.1 1998728 R 423368 CDS YP_002041165.1 194446183 complement(1999498..1999938) 1 NC_011080.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 1999938 ntpA 423368002214 ntpA Salmonella enterica subsp. enterica serovar Newport str. SL254 dATP pyrophosphohydrolase YP_002041165.1 1999498 R 423368 CDS YP_002041166.1 194442789 complement(2000053..2001825) 1 NC_011080.1 'catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes'; aspartyl-tRNA synthetase 2001825 aspS 423368002215 aspS Salmonella enterica subsp. enterica serovar Newport str. SL254 aspartyl-tRNA synthetase YP_002041166.1 2000053 R 423368 CDS YP_002041167.1 194446128 2002150..2002716 1 NC_011080.1 identified by match to protein family HMM PF00857; hypothetical protein 2002716 423368002216 SNSL254_A2061 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041167.1 2002150 D 423368 CDS YP_002041168.1 194442859 2002713..2003531 1 NC_011080.1 identified by match to protein family HMM PF01904; hypothetical protein 2003531 423368002217 SNSL254_A2062 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041168.1 2002713 D 423368 CDS YP_002041169.1 194444814 2003584..2003979 1 NC_011080.1 hypothetical protein 2003979 423368002218 SNSL254_A2063 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041169.1 2003584 D 423368 CDS YP_002041170.1 194446780 2004020..2004763 1 NC_011080.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740; methyltransferase 2004763 423368002219 SNSL254_A2064 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyltransferase YP_002041170.1 2004020 D 423368 CDS YP_002041171.1 194444094 2004760..2005731 1 NC_011080.1 identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM TIGR00452; methyltransferase 2005731 423368002220 SNSL254_A2065 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyltransferase YP_002041171.1 2004760 D 423368 CDS YP_002041172.1 194443585 complement(2005967..2006713) 1 NC_011080.1 identified by match to protein family HMM PF03932; copper homeostasis protein CutC 2006713 423368002221 SNSL254_A2066 Salmonella enterica subsp. enterica serovar Newport str. SL254 copper homeostasis protein CutC YP_002041172.1 2005967 R 423368 CDS YP_002041173.1 194442806 complement(2006733..2007302) 1 NC_011080.1 identified by match to protein family HMM PF06185; hypothetical protein 2007302 423368002222 SNSL254_A2067 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041173.1 2006733 R 423368 CDS YP_002041174.1 194444592 2007407..2007523 1 NC_011080.1 identified by glimmer; hypothetical protein 2007523 423368002223 SNSL254_A2068 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041174.1 2007407 D 423368 CDS YP_002041175.1 194443417 2007539..2009272 1 NC_011080.1 'catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase'; arginyl-tRNA synthetase 2009272 argS 423368002224 argS Salmonella enterica subsp. enterica serovar Newport str. SL254 arginyl-tRNA synthetase YP_002041175.1 2007539 D 423368 CDS YP_002041176.1 194443921 2009461..2011332 1 NC_011080.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 2011332 mrdA 423368002225 mrdA Salmonella enterica subsp. enterica serovar Newport str. SL254 penicillin-binding protein 2 YP_002041176.1 2009461 D 423368 CDS YP_002041177.1 194442446 complement(2011386..2012525) 1 NC_011080.1 identified by match to protein family HMM PF07470; glycosyl hydrolase family protein 2012525 423368002226 SNSL254_A2071 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl hydrolase family protein YP_002041177.1 2011386 R 423368 CDS YP_002041178.1 194442967 complement(2012762..2013154) 1 NC_011080.1 identified by match to protein family HMM PF06366; flagellar protein FlhE 2013154 423368002227 SNSL254_A2072 Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar protein FlhE YP_002041178.1 2012762 R 423368 CDS YP_002041179.1 194445020 complement(2013154..2015232) 1 NC_011080.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2015232 flhA 423368002228 flhA Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar biosynthesis protein FlhA YP_002041179.1 2013154 R 423368 CDS YP_002041180.1 194445536 complement(2015225..2016376) 1 NC_011080.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2016376 flhB 423368002229 flhB Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar biosynthesis protein FlhB YP_002041180.1 2015225 R 423368 CDS YP_002041181.1 194443458 complement(2016570..2017214) 1 NC_011080.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 2017214 423368002230 SNSL254_A2075 Salmonella enterica subsp. enterica serovar Newport str. SL254 chemotaxis regulator CheZ YP_002041181.1 2016570 R 423368 CDS YP_002041182.1 194443971 complement(2017225..2017614) 1 NC_011080.1 'chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble'; chemotaxis regulatory protein CheY 2017614 cheY 423368002231 cheY Salmonella enterica subsp. enterica serovar Newport str. SL254 chemotaxis regulatory protein CheY YP_002041182.1 2017225 R 423368 CDS YP_002041183.1 194442838 complement(2017632..2018681) 1 NC_011080.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 2018681 cheB 423368002232 cheB Salmonella enterica subsp. enterica serovar Newport str. SL254 chemotaxis-specific methylesterase YP_002041183.1 2017632 R 423368 CDS YP_002041184.1 194446749 complement(2018678..2019544) 1 NC_011080.1 methylates the MCP; chemotaxis methyltransferase CheR 2019544 cheR 423368002233 cheR Salmonella enterica subsp. enterica serovar Newport str. SL254 chemotaxis methyltransferase CheR YP_002041184.1 2018678 R 423368 CDS YP_002041185.1 194444788 complement(2019705..2021366) 1 NC_011080.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein II 2021366 423368002234 SNSL254_A2079 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyl-accepting chemotaxis protein II YP_002041185.1 2019705 R 423368 CDS YP_002041187.1 194445162 complement(2021603..2022106) 1 NC_011080.1 identified by match to protein family HMM PF01584; purine-binding chemotaxis protein 2022106 423368002235 SNSL254_A2081 Salmonella enterica subsp. enterica serovar Newport str. SL254 purine-binding chemotaxis protein YP_002041187.1 2021603 R 423368 CDS YP_002041188.1 194445685 complement(2022127..2024136) 1 NC_011080.1 chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 2024136 423368002236 SNSL254_A2082 Salmonella enterica subsp. enterica serovar Newport str. SL254 chemotaxis protein CheA YP_002041188.1 2022127 R 423368 CDS YP_002041189.1 194444100 complement(2024147..2025076) 1 NC_011080.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 2025076 motB 423368002237 motB Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar motor protein MotB YP_002041189.1 2024147 R 423368 CDS YP_002041190.1 194444912 complement(2025073..2025960) 1 NC_011080.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 2025960 motA 423368002238 motA Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar motor protein MotA YP_002041190.1 2025073 R 423368 CDS YP_002041191.1 194443758 complement(2026085..2026669) 1 NC_011080.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 2026669 flhC 423368002239 flhC Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional activator FlhC YP_002041191.1 2026085 R 423368 CDS YP_002041192.1 194444259 complement(2026666..2027007) 1 NC_011080.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 2027007 flhD 423368002240 flhD Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional activator FlhD YP_002041192.1 2026666 R 423368 CDS YP_002041193.1 194442765 complement(2027229..2027372) 1 NC_011080.1 identified by glimmer; hypothetical protein 2027372 423368002241 SNSL254_A2087 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041193.1 2027229 R 423368 CDS YP_002041194.1 194442668 2027803..2028231 1 NC_011080.1 'ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress'; universal stress protein UspC 2028231 423368002242 SNSL254_A2088 Salmonella enterica subsp. enterica serovar Newport str. SL254 universal stress protein UspC YP_002041194.1 2027803 D 423368 CDS YP_002041195.1 194446277 complement(2028249..2029670) 1 NC_011080.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400; trehalose-6-phosphate synthase 2029670 otsA 423368002243 otsA Salmonella enterica subsp. enterica serovar Newport str. SL254 trehalose-6-phosphate synthase YP_002041195.1 2028249 R 423368 CDS YP_002041196.1 194445765 complement(2029645..2030448) 1 NC_011080.1 biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase 2030448 otsB 423368002244 otsB Salmonella enterica subsp. enterica serovar Newport str. SL254 trehalose-6-phosphate phosphatase YP_002041196.1 2029645 R 423368 CDS YP_002041197.1 194445362 complement(2031081..2031623) 1 NC_011080.1 identified by match to protein family HMM PF01965; ThiJ/PfpI domain-containing protein 2031623 423368002245 SNSL254_A2091 Salmonella enterica subsp. enterica serovar Newport str. SL254 ThiJ/PfpI domain-containing protein YP_002041197.1 2031081 R 423368 CDS YP_002041198.1 194444861 2031699..2031848 1 NC_011080.1 identified by glimmer; hypothetical protein 2031848 423368002246 SNSL254_A2092 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041198.1 2031699 D 423368 CDS YP_002041199.1 194443830 2032186..2032689 1 NC_011080.1 identified by match to protein family HMM PF00210; ferritin 2032689 423368002247 SNSL254_A2093 Salmonella enterica subsp. enterica serovar Newport str. SL254 ferritin YP_002041199.1 2032186 D 423368 CDS YP_002041200.1 194443292 complement(2032868..2033506) 1 NC_011080.1 identified by match to protein family HMM PF02502; hypothetical protein 2033506 423368002248 SNSL254_A2094 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041200.1 2032868 R 423368 CDS YP_002041201.1 194446248 2033762..2034097 1 NC_011080.1 outer membrane lipoprotein 2034097 423368002249 SNSL254_A2095 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein YP_002041201.1 2033762 D 423368 CDS YP_002041203.1 194445876 2034337..2034834 1 NC_011080.1 cytoplasmic iron storage protein; ferritin 2034834 ftnA 423368002250 ftnA Salmonella enterica subsp. enterica serovar Newport str. SL254 ferritin YP_002041203.1 2034337 D 423368 CDS YP_002041204.1 194444850 complement(2034880..2035119) 1 NC_011080.1 hypothetical protein 2035119 423368002251 SNSL254_A2098 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041204.1 2034880 R 423368 CDS YP_002041205.1 194444729 2035289..2036557 1 NC_011080.1 identified by match to protein family HMM PF01490; match to protein family HMM PF03222; match to protein family HMM TIGR00837; tyrosine-specific transport protein 2036557 423368002252 SNSL254_A2099 Salmonella enterica subsp. enterica serovar Newport str. SL254 tyrosine-specific transport protein YP_002041205.1 2035289 D 423368 CDS YP_002041206.1 194446082 complement(2036632..2037297) 1 NC_011080.1 identified by match to protein family HMM PF02810; match to protein family HMM TIGR02292; hypothetical protein 2037297 423368002253 SNSL254_A2100 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041206.1 2036632 R 423368 CDS YP_002041207.1 194442332 complement(2037536..2037862) 1 NC_011080.1 glucose-6-phosphate dehydrogenase 2037862 423368002254 SNSL254_A2101 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucose-6-phosphate dehydrogenase YP_002041207.1 2037536 R 423368 CDS YP_002041208.1 194442817 complement(2038075..2039508) 1 NC_011080.1 identified by match to protein family HMM PF00877; cell wall-associated hydrolase 2039508 423368002255 SNSL254_A2102 Salmonella enterica subsp. enterica serovar Newport str. SL254 cell wall-associated hydrolase YP_002041208.1 2038075 R 423368 CDS YP_002041209.1 194443567 complement(2039729..2040013) 1 NC_011080.1 hypothetical protein 2040013 423368002256 SNSL254_A2103 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041209.1 2039729 R 423368 CDS YP_002041210.1 194444193 complement(2040107..2040235) 1 NC_011080.1 identified by glimmer; hypothetical protein 2040235 423368002257 SNSL254_A2104 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041210.1 2040107 R 423368 CDS YP_002041211.1 194444902 complement(2040763..2041311) 1 NC_011080.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; phosphatidylglycerophosphate synthetase 2041311 pgsA 423368002261 pgsA Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphatidylglycerophosphate synthetase YP_002041211.1 2040763 R 423368 CDS YP_002041212.1 194445436 complement(2041368..2043200) 1 NC_011080.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2043200 uvrC 423368002262 uvrC Salmonella enterica subsp. enterica serovar Newport str. SL254 excinuclease ABC subunit C YP_002041212.1 2041368 R 423368 CDS YP_002041213.1 194446212 complement(2043197..2043853) 1 NC_011080.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2043853 uvrY 423368002263 uvrY Salmonella enterica subsp. enterica serovar Newport str. SL254 response regulator YP_002041213.1 2043197 R 423368 CDS YP_002041214.1 194445648 2044317..2044541 1 NC_011080.1 hypothetical protein 2044541 423368002264 SNSL254_A2111 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041214.1 2044317 D 423368 CDS YP_002041215.1 194445102 complement(2044608..2045330) 1 NC_011080.1 regulates genes involved in cell division; DNA-binding transcriptional activator SdiA 2045330 423368002265 SNSL254_A2112 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator SdiA YP_002041215.1 2044608 R 423368 CDS YP_002041216.1 194446737 complement(2045562..2046314) 1 NC_011080.1 identified by match to protein family HMM PF00005; amino-acid ABC transporter ATP-binding protein YecC 2046314 423368002266 SNSL254_A2113 Salmonella enterica subsp. enterica serovar Newport str. SL254 amino-acid ABC transporter ATP-binding protein YecC YP_002041216.1 2045562 R 423368 CDS YP_002041217.1 194446396 complement(2046311..2046979) 1 NC_011080.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine-binding periplasmic protein/glutamine transport system permease protein 2046979 423368002267 SNSL254_A2114 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamine-binding periplasmic protein/glutamine transport system permease protein YP_002041217.1 2046311 R 423368 CDS YP_002041218.1 194445885 complement(2047000..2047986) 1 NC_011080.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2047986 423368002268 SNSL254_A2115 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-cysteine desulfhydrase YP_002041218.1 2047000 R 423368 CDS YP_002041219.1 194444067 complement(2048140..2048940) 1 NC_011080.1 identified by match to protein family HMM PF00497; cystine transporter subunit 2048940 fliY 423368002269 fliY Salmonella enterica subsp. enterica serovar Newport str. SL254 cystine transporter subunit YP_002041219.1 2048140 R 423368 CDS YP_002041220.1 194445382 complement(2049697..2050386) 1 NC_011080.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 2050386 fliA 423368002271 fliA Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar biosynthesis sigma factor YP_002041220.1 2049697 R 423368 CDS YP_002041221.1 194444875 complement(2050613..2051818) 1 NC_011080.1 lysine-N-methylase 2051818 423368002272 SNSL254_A2119 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysine-N-methylase YP_002041221.1 2050613 R 423368 CDS YP_002041222.1 194444631 complement(2051897..2053405) 1 NC_011080.1 'structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes'; flagellin 2053405 423368002273 SNSL254_A2120 Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellin YP_002041222.1 2051897 R 423368 CDS YP_002041223.1 194444409 2053555..2053683 1 NC_011080.1 identified by glimmer; hypothetical protein 2053683 423368002274 SNSL254_A2121 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041223.1 2053555 D 423368 CDS YP_002041224.1 194442510 2053662..2055065 1 NC_011080.1 involved in flagellin assembly; flagellar capping protein 2055065 fliD 423368002275 fliD Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar capping protein YP_002041224.1 2053662 D 423368 CDS YP_002041225.1 194443107 2055080..2055487 1 NC_011080.1 flagellin specific chaperone; flagellar protein FliS 2055487 fliS 423368002276 fliS Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar protein FliS YP_002041225.1 2055080 D 423368 CDS YP_002041226.1 194444051 2055487..2055855 1 NC_011080.1 binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2055855 423368002277 SNSL254_A2124 Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar biosynthesis protein FliT YP_002041226.1 2055487 D 423368 CDS YP_002041227.1 194444955 2055927..2057411 1 NC_011080.1 'converts 1,4-alpha-D-glucans to maltodextrin'; alpha-amylase 2057411 423368002278 SNSL254_A2125 Salmonella enterica subsp. enterica serovar Newport str. SL254 alpha-amylase YP_002041227.1 2055927 D 423368 CDS YP_002041228.1 194443239 complement(2057451..2057864) 1 NC_011080.1 hypothetical protein 2057864 423368002279 SNSL254_A2126 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041228.1 2057451 R 423368 CDS YP_002041229.2 448967529 2057990..2059255 1 NC_011080.1 identified by match to protein family HMM PF04143; inner membrane protein 2059255 423368002280 SNSL254_A2127 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane protein YP_002041229.2 2057990 D 423368 CDS YP_002041230.1 194446618 2059252..2059485 1 NC_011080.1 identified by match to protein family HMM PF01206; hypothetical protein 2059485 423368002281 SNSL254_A2128 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041230.1 2059252 D 423368 CDS YP_002041231.1 194443201 2059783..2060136 1 NC_011080.1 50S ribosomal protein 2060136 423368002282 SNSL254_A2129 Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein YP_002041231.1 2059783 D 423368 CDS YP_002041232.1 194445746 complement(2060256..2060570) 1 NC_011080.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 2060570 fliE 423368002283 fliE Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar hook-basal body protein FliE YP_002041232.1 2060256 R 423368 CDS YP_002041233.1 194443731 complement(2060617..2060745) 1 NC_011080.1 hypothetical protein 2060745 423368002284 SNSL254_A2132 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041233.1 2060617 R 423368 CDS YP_002041234.1 194445262 2060730..2062469 1 NC_011080.1 'the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod'; flagellar MS-ring protein 2062469 fliF 423368002285 fliF Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar MS-ring protein YP_002041234.1 2060730 D 423368 CDS YP_002041235.1 194444771 2062462..2063457 1 NC_011080.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2063457 fliG 423368002286 fliG Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar motor switch protein G YP_002041235.1 2062462 D 423368 CDS YP_002041236.1 194445015 2063450..2064157 1 NC_011080.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2064157 fliH 423368002287 fliH Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar assembly protein H YP_002041236.1 2063450 D 423368 CDS YP_002041237.1 194445652 2064157..2065527 1 NC_011080.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2065527 fliI 423368002288 fliI Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellum-specific ATP synthase YP_002041237.1 2064157 D 423368 CDS YP_002041238.1 194445973 2065549..2065992 1 NC_011080.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 2065992 fliJ 423368002289 fliJ Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar biosynthesis chaperone YP_002041238.1 2065549 D 423368 CDS YP_002041239.1 194443282 2065989..2067212 1 NC_011080.1 identified by match to protein family HMM PF02120; flagellar hook-length control protein 2067212 423368002290 SNSL254_A2137 Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar hook-length control protein YP_002041239.1 2065989 D 423368 CDS YP_002041240.1 194442590 2067317..2067784 1 NC_011080.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2067784 fliL 423368002291 fliL Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar basal body-associated protein FliL YP_002041240.1 2067317 D 423368 CDS YP_002041241.1 194444199 2067789..2068793 1 NC_011080.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2068793 fliM 423368002292 fliM Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar motor switch protein FliM YP_002041241.1 2067789 D 423368 CDS YP_002041242.1 194443428 2068790..2069203 1 NC_011080.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2069203 fliN 423368002293 fliN Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar motor switch protein FliN YP_002041242.1 2068790 D 423368 CDS YP_002041243.1 194445467 2069203..2069580 1 NC_011080.1 'with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus'; flagellar biosynthesis protein FliO 2069580 423368002294 SNSL254_A2141 Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar biosynthesis protein FliO YP_002041243.1 2069203 D 423368 CDS YP_002041244.1 194444637 2069580..2070317 1 NC_011080.1 'FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus'; flagellar biosynthesis protein FliP 2070317 fliP 423368002295 fliP Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar biosynthesis protein FliP YP_002041244.1 2069580 D 423368 CDS YP_002041245.1 194443974 2070327..2070596 1 NC_011080.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2070596 fliQ 423368002296 fliQ Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar biosynthesis protein FliQ YP_002041245.1 2070327 D 423368 CDS YP_002041246.1 194444159 2070605..2071399 1 NC_011080.1 'FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus'; flagellar biosynthesis protein FliR 2071399 fliR 423368002297 fliR Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellar biosynthesis protein FliR YP_002041246.1 2070605 D 423368 CDS YP_002041247.1 194443326 2071681..2072304 1 NC_011080.1 identified by match to protein family HMM PF00196; colanic acid capsular biosynthesis activation protein A 2072304 rcsA 423368002298 rcsA Salmonella enterica subsp. enterica serovar Newport str. SL254 colanic acid capsular biosynthesis activation protein A YP_002041247.1 2071681 D 423368 CDS YP_002041248.1 194442607 complement(2072343..2072537) 1 NC_011080.1 hypothetical protein 2072537 423368002299 SNSL254_A2146 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041248.1 2072343 R 423368 CDS YP_002041249.1 194442439 2072666..2072893 1 NC_011080.1 hypothetical protein 2072893 423368002300 SNSL254_A2147 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041249.1 2072666 D 423368 CDS YP_002041250.1 194446141 2073203..2074018 1 NC_011080.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2074018 423368002302 SNSL254_A2149 Salmonella enterica subsp. enterica serovar Newport str. SL254 mannosyl-3-phosphoglycerate phosphatase YP_002041250.1 2073203 D 423368 CDS YP_002041251.1 194446695 complement(2073997..2075709) 1 NC_011080.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; cellulose synthesis regulatory protein 2075709 423368002303 SNSL254_A2150 Salmonella enterica subsp. enterica serovar Newport str. SL254 cellulose synthesis regulatory protein YP_002041251.1 2073997 R 423368 CDS YP_002041252.1 194445463 complement(2075874..2076059) 1 NC_011080.1 hypothetical protein 2076059 423368002304 SNSL254_A2151 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041252.1 2075874 R 423368 CDS YP_002041253.1 194445011 complement(2076136..2077047) 1 NC_011080.1 identified by match to protein family HMM PF05661; hypothetical protein 2077047 423368002305 SNSL254_A2152 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041253.1 2076136 R 423368 CDS YP_002041254.1 194443963 2077223..2078143 1 NC_011080.1 identified by match to protein family HMM PF00892; hypothetical protein 2078143 423368002306 SNSL254_A2153 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041254.1 2077223 D 423368 CDS YP_002041255.1 194445053 complement(2078132..2078602) 1 NC_011080.1 identified by match to protein family HMM PF03852; match to protein family HMM TIGR00632; very short patch repair protein 2078602 423368002307 SNSL254_A2154 Salmonella enterica subsp. enterica serovar Newport str. SL254 very short patch repair protein YP_002041255.1 2078132 R 423368 CDS YP_002041256.1 194443436 complement(2078583..2080013) 1 NC_011080.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA cytosine methylase 2080013 423368002308 SNSL254_A2155 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA cytosine methylase YP_002041256.1 2078583 R 423368 CDS YP_002041257.1 194442952 complement(2080087..2080782) 1 NC_011080.1 identified by match to protein family HMM PF01966; hypothetical protein 2080782 423368002309 SNSL254_A2156 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041257.1 2080087 R 423368 CDS YP_002041258.1 194442553 complement(2080862..2081140) 1 NC_011080.1 outer membrane protein N 2081140 423368002310 SNSL254_A2157 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein N YP_002041258.1 2080862 R 423368 CDS YP_002041259.1 194442356 complement(2081280..2081411) 1 NC_011080.1 identified by glimmer; hypothetical protein 2081411 423368002311 SNSL254_A2158 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041259.1 2081280 R 423368 CDS YP_002041260.1 194446148 2081823..2083019 1 NC_011080.1 identified by match to protein family HMM PF00267; outer membrane protein N 2083019 423368002312 SNSL254_A2159 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein N YP_002041260.1 2081823 D 423368 CDS YP_002041262.1 194444086 complement(2084143..2085411) 1 NC_011080.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 2085411 umuC 423368002313 umuC Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase V subunit UmuC YP_002041262.1 2084143 R 423368 CDS YP_002041263.1 194443595 complement(2085414..2085833) 1 NC_011080.1 binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD 2085833 423368002314 SNSL254_A2163 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase V subunit UmuD YP_002041263.1 2085414 R 423368 CDS YP_002041264.1 194445496 complement(2085960..2086121) 1 NC_011080.1 hypothetical protein 2086121 423368002315 SNSL254_A2164 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041264.1 2085960 R 423368 CDS YP_002041265.1 194444915 2086602..2087399 1 NC_011080.1 identified by match to protein family HMM PF06167; hypothetical protein 2087399 423368002317 SNSL254_A2166 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041265.1 2086602 D 423368 CDS YP_002041266.1 194442813 2088708..2089232 1 NC_011080.1 endoprotease 2089232 423368002321 SNSL254_A2171 Salmonella enterica subsp. enterica serovar Newport str. SL254 endoprotease YP_002041266.1 2088708 D 423368 CDS YP_002041267.1 194443207 complement(2089281..2089406) 1 NC_011080.1 hypothetical protein 2089406 423368002322 SNSL254_A2172 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041267.1 2089281 R 423368 CDS YP_002041269.1 194442982 2090748..2092916 1 NC_011080.1 identified by match to protein family HMM PF07661; match to protein family HMM PF08238; hypothetical protein 2092916 423368002324 SNSL254_A2175 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041269.1 2090748 D 423368 CDS YP_002041270.1 194446033 2092973..2094703 1 NC_011080.1 hypothetical protein 2094703 423368002325 SNSL254_A2176 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041270.1 2092973 D 423368 CDS YP_002041271.1 194445379 2094734..2094868 1 NC_011080.1 hypothetical protein 2094868 423368002326 SNSL254_A2177 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041271.1 2094734 D 423368 CDS YP_002041272.1 194444974 2094913..2095083 1 NC_011080.1 hypothetical protein 2095083 423368002327 SNSL254_A2178 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041272.1 2094913 D 423368 CDS YP_002041273.1 194444036 complement(2095605..2097059) 1 NC_011080.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 2097059 amn 423368002328 amn Salmonella enterica subsp. enterica serovar Newport str. SL254 AMP nucleosidase YP_002041273.1 2095605 R 423368 CDS YP_002041274.1 194443992 complement(2097077..2097265) 1 NC_011080.1 identified by glimmer; hypothetical protein 2097265 423368002329 SNSL254_A2180 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041274.1 2097077 R 423368 CDS YP_008083629.1 513538107 complement(2097930..2099456) 1 NC_011080.1 MATE family multidrug exporte 2099456 423368002331 SNSL254_A2183 Salmonella enterica subsp. enterica serovar Newport str. SL254 MATE family multidrug exporte YP_008083629.1 2097930 R 423368 CDS YP_002041276.1 194446668 2099787..2100089 1 NC_011080.1 integrase 2100089 423368002333 SNSL254_A2185 Salmonella enterica subsp. enterica serovar Newport str. SL254 integrase YP_002041276.1 2099787 D 423368 CDS YP_002041277.1 194445401 complement(2100108..2101157) 1 NC_011080.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832; arsenical-resistance protein 2101157 arsB 423368002334 arsB Salmonella enterica subsp. enterica serovar Newport str. SL254 arsenical-resistance protein YP_002041277.1 2100108 R 423368 CDS YP_002041278.1 194443345 complement(2101175..2102935) 1 NC_011080.1 identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenical pump-driving ATPase 2102935 423368002335 SNSL254_A2187 Salmonella enterica subsp. enterica serovar Newport str. SL254 arsenical pump-driving ATPase YP_002041278.1 2101175 R 423368 CDS YP_002041279.1 194442250 complement(2102979..2103341) 1 NC_011080.1 identified by match to protein family HMM PF06953; arsenical resistance operon trans-acting repressor ArsD 2103341 423368002336 SNSL254_A2188 Salmonella enterica subsp. enterica serovar Newport str. SL254 arsenical resistance operon trans-acting repressor ArsD YP_002041279.1 2102979 R 423368 CDS YP_002041280.1 194446342 complement(2103375..2103851) 1 NC_011080.1 identified by match to protein family HMM PF01451; arsenate reductase 2103851 423368002337 SNSL254_A2189 Salmonella enterica subsp. enterica serovar Newport str. SL254 arsenate reductase YP_002041280.1 2103375 R 423368 CDS YP_002041281.1 194446702 complement(2103848..2104261) 1 NC_011080.1 arsenic resistance transcriptional regulator 2104261 423368002338 SNSL254_A2190 Salmonella enterica subsp. enterica serovar Newport str. SL254 arsenic resistance transcriptional regulator YP_002041281.1 2103848 R 423368 CDS YP_002041282.1 194446202 complement(2104971..2105900) 1 NC_011080.1 identified by match to protein family HMM PF03734; hypothetical protein 2105900 423368002339 SNSL254_A2191 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041282.1 2104971 R 423368 CDS YP_002041283.1 194445069 complement(2105978..2107048) 1 NC_011080.1 'catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole'; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2107048 cobT 423368002340 cobT Salmonella enterica subsp. enterica serovar Newport str. SL254 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_002041283.1 2105978 R 423368 CDS YP_002041284.1 194444255 complement(2107075..2107818) 1 NC_011080.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 2107818 cobS 423368002341 cobS Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalamin synthase YP_002041284.1 2107075 R 423368 CDS YP_002041285.1 194443742 complement(2107815..2108360) 1 NC_011080.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase 2108360 cobU 423368002342 cobU Salmonella enterica subsp. enterica serovar Newport str. SL254 adenosylcobinamide kinase YP_002041285.1 2107815 R 423368 CDS YP_002041286.1 194442959 complement(2108357..2109898) 1 NC_011080.1 'catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation'; cobyric acid synthase 2109898 cobQ 423368002343 cobQ Salmonella enterica subsp. enterica serovar Newport str. SL254 cobyric acid synthase YP_002041286.1 2108357 R 423368 CDS YP_002041287.1 194446307 complement(2109874..2110689) 1 NC_011080.1 with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit 2110689 cbiO 423368002344 cbiO Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt transporter ATP-binding subunit YP_002041287.1 2109874 R 423368 CDS YP_002041288.1 194444617 complement(2110698..2111375) 1 NC_011080.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ 2111375 cbiQ 423368002345 cbiQ Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt ABC transporter permease CbiQ YP_002041288.1 2110698 R 423368 CDS YP_002041289.1 194445918 complement(2111362..2111643) 1 NC_011080.1 periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 2111643 423368002346 SNSL254_A2198 Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt transport protein CbiN YP_002041289.1 2111362 R 423368 CDS YP_002041290.1 194444800 complement(2111645..2112382) 1 NC_011080.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 2112382 cbiM 423368002347 cbiM Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt transport protein CbiM YP_002041290.1 2111645 R 423368 CDS YP_002041291.1 194445422 complement(2112379..2113092) 1 NC_011080.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 2113092 cobI 423368002348 cobI Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt-precorrin-2 C(20)-methyltransferase YP_002041291.1 2112379 R 423368 CDS YP_002041292.1 194445225 complement(2113089..2113883) 1 NC_011080.1 identified by match to protein family HMM PF06180; sirohydrochlorin cobaltochelatase 2113883 423368002349 SNSL254_A2201 Salmonella enterica subsp. enterica serovar Newport str. SL254 sirohydrochlorin cobaltochelatase YP_002041292.1 2113089 R 423368 CDS YP_002041293.1 194443674 complement(2113886..2114677) 1 NC_011080.1 'CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6'; cobalt-precorrin-6x reductase 2114677 cobK 423368002350 cobK Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt-precorrin-6x reductase YP_002041293.1 2113886 R 423368 CDS YP_002041294.1 194444314 complement(2114674..2115399) 1 NC_011080.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase 2115399 cobJ 423368002351 cobJ Salmonella enterica subsp. enterica serovar Newport str. SL254 precorrin-3B C(17)-methyltransferase YP_002041294.1 2114674 R 423368 CDS YP_002041295.1 194442678 complement(2115399..2116454) 1 NC_011080.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 2116454 423368002352 SNSL254_A2204 Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalamin biosynthesis protein CbiG YP_002041295.1 2115399 R 423368 CDS YP_002041296.1 194443288 complement(2116435..2117208) 1 NC_011080.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase 2117208 cobM 423368002353 cobM Salmonella enterica subsp. enterica serovar Newport str. SL254 precorrin-4 C(11)-methyltransferase YP_002041296.1 2116435 R 423368 CDS YP_002041297.1 194446414 complement(2117192..2117770) 1 NC_011080.1 catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase 2117770 423368002354 SNSL254_A2206 Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt-precorrin-6Y C(15)-methyltransferase YP_002041297.1 2117192 R 423368 CDS YP_002041298.1 194443515 complement(2117760..2118365) 1 NC_011080.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase 2118365 cbiE 423368002355 cbiE Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt-precorrin-6Y C(5)-methyltransferase YP_002041298.1 2117760 R 423368 CDS YP_002041299.1 194445924 complement(2118359..2119498) 1 NC_011080.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2119498 cbiD 423368002356 cbiD Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt-precorrin-6A synthase YP_002041299.1 2118359 R 423368 CDS YP_002041300.1 194443093 complement(2119498..2120130) 1 NC_011080.1 catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase 2120130 cbiC 423368002357 cbiC Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt-precorrin-8X methylmutase YP_002041300.1 2119498 R 423368 CDS YP_002041301.1 194442297 complement(2120141..2121100) 1 NC_011080.1 CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 2121100 cbiB 423368002358 cbiB Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalamin biosynthesis protein YP_002041301.1 2120141 R 423368 CDS YP_002041302.1 194444033 complement(2121097..2122476) 1 NC_011080.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2122476 cobB 423368002359 cobB Salmonella enterica subsp. enterica serovar Newport str. SL254 cobyrinic acid a,c-diamide synthase YP_002041302.1 2121097 R 423368 CDS YP_002041303.1 194444037 complement(2123074..2123985) 1 NC_011080.1 identified by match to protein family HMM PF00165; regulatory protein PocR 2123985 423368002360 SNSL254_A2213 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein PocR YP_002041303.1 2123074 R 423368 CDS YP_002041304.1 194443352 complement(2124202..2124996) 1 NC_011080.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; propanediol diffusion facilitator 2124996 423368002361 SNSL254_A2214 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol diffusion facilitator YP_002041304.1 2124202 R 423368 CDS YP_002041305.1 194446281 2125521..2125805 1 NC_011080.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduA 2125805 pduA 423368002362 pduA Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization protein PduA YP_002041305.1 2125521 D 423368 CDS YP_002041306.1 194444605 2125802..2126614 1 NC_011080.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduB 2126614 423368002363 SNSL254_A2216 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization protein PduB YP_002041306.1 2125802 D 423368 CDS YP_002041307.1 194443056 2126633..2128297 1 NC_011080.1 identified by match to protein family HMM PF02286; propanediol utilization dehydratase large subunit 2128297 pduC 423368002364 pduC Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization dehydratase large subunit YP_002041307.1 2126633 D 423368 CDS YP_002041308.1 194444956 2128308..2128982 1 NC_011080.1 identified by match to protein family HMM PF02288; propanediol utilization: dehydratase, medium subunit 2128982 423368002365 SNSL254_A2218 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization: dehydratase, medium subunit YP_002041308.1 2128308 D 423368 CDS YP_002041309.1 194446555 2128997..2129518 1 NC_011080.1 identified by match to protein family HMM PF02287; propanediol dehydratase small subunit 2129518 423368002366 SNSL254_A2219 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol dehydratase small subunit YP_002041309.1 2128997 D 423368 CDS YP_002041310.1 194444734 2129534..2131366 1 NC_011080.1 identified by match to protein family HMM PF08841; glycerol dehydratase reactivation factor large subunit 2131366 423368002367 SNSL254_A2220 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol dehydratase reactivation factor large subunit YP_002041310.1 2129534 D 423368 CDS YP_002041311.1 194442961 2131356..2131706 1 NC_011080.1 propanediol dehydratase reactivation protein 2131706 423368002368 SNSL254_A2221 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol dehydratase reactivation protein YP_002041311.1 2131356 D 423368 CDS YP_002041312.1 194445681 2131725..2132000 1 NC_011080.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduJ 2132000 423368002369 SNSL254_A2222 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization protein PduJ YP_002041312.1 2131725 D 423368 CDS YP_002041313.1 194442709 2132025..2132486 1 NC_011080.1 identified by match to protein family HMM PF00936; propanediol utilization protein (pduK) 2132486 423368002370 SNSL254_A2223 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization protein (pduK) YP_002041313.1 2132025 D 423368 CDS YP_002041314.1 194443235 2132486..2133118 1 NC_011080.1 identified by match to protein family HMM PF06130; propanediol utilization 2133118 423368002371 SNSL254_A2224 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization YP_002041314.1 2132486 D 423368 CDS YP_002041315.1 194443757 2133115..2133606 1 NC_011080.1 propanediol utilization 2133606 423368002372 SNSL254_A2225 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization YP_002041315.1 2133115 D 423368 CDS YP_002041316.1 194444254 2133610..2133885 1 NC_011080.1 identified by match to protein family HMM PF03319; propanediol utilization protein (pduK) 2133885 423368002373 SNSL254_A2226 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization protein (pduK) YP_002041316.1 2133610 D 423368 CDS YP_002041317.1 194446088 2133895..2134905 1 NC_011080.1 identified by match to protein family HMM PF01923; match to protein family HMM PF03928; match to protein family HMM TIGR00636; hypothetical protein 2134905 423368002374 SNSL254_A2227 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041317.1 2133895 D 423368 CDS YP_002041318.1 194446326 2134902..2136296 1 NC_011080.1 identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE 2136296 423368002375 SNSL254_A2228 Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutE YP_002041318.1 2134902 D 423368 CDS YP_002041319.1 194446766 2136308..2137420 1 NC_011080.1 identified by match to protein family HMM PF00465; propanediol utilization propanol dehydrogenase 2137420 423368002376 SNSL254_A2229 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization propanol dehydrogenase YP_002041319.1 2136308 D 423368 CDS YP_002041320.1 194442756 2137417..2138772 1 NC_011080.1 identified by match to protein family HMM PF01512; polyhedral body protein 2138772 423368002377 SNSL254_A2230 Salmonella enterica subsp. enterica serovar Newport str. SL254 polyhedral body protein YP_002041320.1 2137417 D 423368 CDS YP_002041321.1 194442449 2138775..2139329 1 NC_011080.1 identified by match to protein family HMM PF00936; polyhedral body protein 2139329 423368002378 SNSL254_A2231 Salmonella enterica subsp. enterica serovar Newport str. SL254 polyhedral body protein YP_002041321.1 2138775 D 423368 CDS YP_002041322.1 194443737 2139329..2139679 1 NC_011080.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduU 2139679 423368002379 SNSL254_A2232 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization protein PduU YP_002041322.1 2139329 D 423368 CDS YP_002041323.1 194443411 2139684..2140136 1 NC_011080.1 identified by match to protein family HMM TIGR02528; ethanolamine utilization protein EutP 2140136 eutP 423368002380 eutP Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutP YP_002041323.1 2139684 D 423368 CDS YP_002041324.1 194443928 2140121..2141335 1 NC_011080.1 'involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol'; propionate kinase 2141335 ackA 423368002381 ackA Salmonella enterica subsp. enterica serovar Newport str. SL254 propionate kinase YP_002041324.1 2140121 D 423368 CDS YP_002041325.1 194445064 2141429..2142295 1 NC_011080.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; propanediol utilization 2142295 423368002382 SNSL254_A2235 Salmonella enterica subsp. enterica serovar Newport str. SL254 propanediol utilization YP_002041325.1 2141429 D 423368 CDS YP_002041326.1 194445566 complement(2142329..2142664) 1 NC_011080.1 identified by match to protein family HMM PF04363; hypothetical protein 2142664 423368002383 SNSL254_A2236 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041326.1 2142329 R 423368 CDS YP_002041327.1 194442544 complement(2142909..2143967) 1 NC_011080.1 hypothetical protein 2143967 423368002384 SNSL254_A2237 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041327.1 2142909 R 423368 CDS YP_002041328.1 194445501 complement(2144086..2144553) 1 NC_011080.1 identified by match to protein family HMM PF06445; DNA gyrase inhibitor 2144553 423368002385 SNSL254_A2238 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA gyrase inhibitor YP_002041328.1 2144086 R 423368 CDS YP_002041329.1 194445713 complement(2144704..2145876) 1 NC_011080.1 'removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 2145876 dacD 423368002386 dacD Salmonella enterica subsp. enterica serovar Newport str. SL254 D-alanyl-D-alanine carboxypeptidase YP_002041329.1 2144704 R 423368 CDS YP_002041330.1 194445192 complement(2146000..2146764) 1 NC_011080.1 identified by match to protein family HMM PF01292; thiosulfate reductase cytochrome B subunit 2146764 423368002387 SNSL254_A2240 Salmonella enterica subsp. enterica serovar Newport str. SL254 thiosulfate reductase cytochrome B subunit YP_002041330.1 2146000 R 423368 CDS YP_002041331.1 194442552 complement(2146761..2147339) 1 NC_011080.1 identified by match to protein family HMM PF00037; (4Fe-4S)-binding protein 2147339 423368002388 SNSL254_A2241 Salmonella enterica subsp. enterica serovar Newport str. SL254 (4Fe-4S)-binding protein YP_002041331.1 2146761 R 423368 CDS YP_002041332.1 194446676 complement(2147354..2149630) 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; thiosulfate reductase 2149630 423368002389 SNSL254_A2242 Salmonella enterica subsp. enterica serovar Newport str. SL254 thiosulfate reductase YP_002041332.1 2147354 R 423368 CDS YP_002041333.1 194444317 2150249..2152597 1 NC_011080.1 secreted effector protein 2152597 423368002390 SNSL254_A2243 Salmonella enterica subsp. enterica serovar Newport str. SL254 secreted effector protein YP_002041333.1 2150249 D 423368 CDS YP_002041334.1 194443671 2152964..2154394 1 NC_011080.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2154394 sbcB 423368002391 sbcB Salmonella enterica subsp. enterica serovar Newport str. SL254 exonuclease I YP_002041334.1 2152964 D 423368 CDS YP_002041335.1 194445403 complement(2154530..2155888) 1 NC_011080.1 identified by match to protein family HMM PF00324; amino acid permease 2155888 yeeF 423368002392 yeeF Salmonella enterica subsp. enterica serovar Newport str. SL254 amino acid permease YP_002041335.1 2154530 R 423368 CDS YP_002041337.1 194445500 complement(2156174..2157088) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 2157088 423368002393 SNSL254_A2247 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR substrate binding domain-containing protein YP_002041337.1 2156174 R 423368 CDS YP_002041338.1 194446133 complement(2157134..2157958) 1 NC_011080.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; hypothetical protein 2157958 423368002394 SNSL254_A2248 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041338.1 2157134 R 423368 CDS YP_002041339.1 194446157 2158317..2159216 1 NC_011080.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2159216 hisG 423368002395 hisG Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP phosphoribosyltransferase YP_002041339.1 2158317 D 423368 CDS YP_002041340.1 194442217 2159319..2160623 1 NC_011080.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2160623 hisD 423368002396 hisD Salmonella enterica subsp. enterica serovar Newport str. SL254 histidinol dehydrogenase YP_002041340.1 2159319 D 423368 CDS YP_002041341.1 194444826 2160620..2161699 1 NC_011080.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2161699 hisC 423368002397 hisC Salmonella enterica subsp. enterica serovar Newport str. SL254 histidinol-phosphate aminotransferase YP_002041341.1 2160620 D 423368 CDS YP_002041342.1 194445508 2161696..2162763 1 NC_011080.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2162763 hisB 423368002398 hisB Salmonella enterica subsp. enterica serovar Newport str. SL254 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_002041342.1 2161696 D 423368 CDS YP_002041343.1 194443517 2162763..2163353 1 NC_011080.1 'with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide'; imidazole glycerol phosphate synthase subunit HisH 2163353 hisH 423368002399 hisH Salmonella enterica subsp. enterica serovar Newport str. SL254 imidazole glycerol phosphate synthase subunit HisH YP_002041343.1 2162763 D 423368 CDS YP_002041344.1 194444200 2163353..2164090 1 NC_011080.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2164090 hisA 423368002400 hisA Salmonella enterica subsp. enterica serovar Newport str. SL254 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_002041344.1 2163353 D 423368 CDS YP_002041345.1 194446795 2164072..2164848 1 NC_011080.1 'catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase'; imidazole glycerol phosphate synthase subunit HisF 2164848 hisF 423368002401 hisF Salmonella enterica subsp. enterica serovar Newport str. SL254 imidazole glycerol phosphate synthase subunit HisF YP_002041345.1 2164072 D 423368 CDS YP_002041346.1 194446190 2164842..2165453 1 NC_011080.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2165453 423368002402 SNSL254_A2257 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_002041346.1 2164842 D 423368 CDS YP_002041347.1 194442287 complement(2165534..2166517) 1 NC_011080.1 identified by match to protein family HMM PF02706; chain length determinant protein 2166517 423368002403 SNSL254_A2258 Salmonella enterica subsp. enterica serovar Newport str. SL254 chain length determinant protein YP_002041347.1 2165534 R 423368 CDS YP_002041348.1 194444106 complement(2166660..2167826) 1 NC_011080.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; udp-glucose 6-dehydrogenase 2167826 423368002404 SNSL254_A2259 Salmonella enterica subsp. enterica serovar Newport str. SL254 udp-glucose 6-dehydrogenase YP_002041348.1 2166660 R 423368 CDS YP_002041349.1 194446452 complement(2168063..2169469) 1 NC_011080.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2169469 gnd 423368002405 gnd Salmonella enterica subsp. enterica serovar Newport str. SL254 6-phosphogluconate dehydrogenase YP_002041349.1 2168063 R 423368 CDS YP_002041350.1 194445954 complement(2169633..2171063) 1 NC_011080.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025; undecaprenyl-phosphate galactose phosphotransferase 2171063 423368002406 SNSL254_A2261 Salmonella enterica subsp. enterica serovar Newport str. SL254 undecaprenyl-phosphate galactose phosphotransferase YP_002041350.1 2169633 R 423368 CDS YP_002041351.1 194443057 complement(2171142..2172578) 1 NC_011080.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 2172578 423368002407 SNSL254_A2262 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphomannomutase YP_002041351.1 2171142 R 423368 CDS YP_002041352.1 194442640 complement(2172586..2174007) 1 NC_011080.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase 2174007 423368002408 SNSL254_A2263 Salmonella enterica subsp. enterica serovar Newport str. SL254 mannose-1-phosphate guanylyltransferase YP_002041352.1 2172586 R 423368 CDS YP_002041353.1 194444353 complement(2174022..2175179) 1 NC_011080.1 identified by match to protein family HMM PF00534; group 1 glycosyl transferase 2175179 423368002409 SNSL254_A2264 Salmonella enterica subsp. enterica serovar Newport str. SL254 group 1 glycosyl transferase YP_002041353.1 2174022 R 423368 CDS YP_002041354.1 194443692 complement(2175166..2176176) 1 NC_011080.1 identified by match to protein family HMM PF00534; second mannosyl transferase 2176176 423368002410 SNSL254_A2265 Salmonella enterica subsp. enterica serovar Newport str. SL254 second mannosyl transferase YP_002041354.1 2175166 R 423368 CDS YP_002041355.1 194445247 complement(2176176..2177375) 1 NC_011080.1 identified by match to protein family HMM PF04932; O-antigen polymerase 2177375 423368002411 SNSL254_A2266 Salmonella enterica subsp. enterica serovar Newport str. SL254 O-antigen polymerase YP_002041355.1 2176176 R 423368 CDS YP_002041356.1 194444599 complement(2177469..2178512) 1 NC_011080.1 identified by match to protein family HMM PF00535; rhamnosyl transferase 2178512 423368002412 SNSL254_A2267 Salmonella enterica subsp. enterica serovar Newport str. SL254 rhamnosyl transferase YP_002041356.1 2177469 R 423368 CDS YP_002041357.1 194443301 complement(2178514..2179128) 1 NC_011080.1 hypothetical protein 2179128 423368002413 SNSL254_A2268 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041357.1 2178514 R 423368 CDS YP_002041358.1 194442617 complement(2179175..2180137) 1 NC_011080.1 identified by match to protein family HMM PF00535; glycosyl transferase 2180137 423368002414 SNSL254_A2269 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl transferase YP_002041358.1 2179175 R 423368 CDS YP_002041359.1 194446623 complement(2180130..2181470) 1 NC_011080.1 hypothetical protein 2181470 423368002415 SNSL254_A2270 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041359.1 2180130 R 423368 CDS YP_002041360.1 194442501 complement(2181470..2182351) 1 NC_011080.1 identified by match to protein family HMM PF01370; CDP-abequose synthase 2182351 423368002416 SNSL254_A2271 Salmonella enterica subsp. enterica serovar Newport str. SL254 CDP-abequose synthase YP_002041360.1 2181470 R 423368 CDS YP_002041361.1 194445574 complement(2182365..2183678) 1 NC_011080.1 identified by match to protein family HMM PF01041; lipopolysaccharide biosynthesis protein RfbH 2183678 423368002417 SNSL254_A2272 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide biosynthesis protein RfbH YP_002041361.1 2182365 R 423368 CDS YP_002041362.1 194445789 complement(2183705..2184784) 1 NC_011080.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622; CDP-glucose 4,6-dehydratase 2184784 rfbG 423368002418 rfbG Salmonella enterica subsp. enterica serovar Newport str. SL254 CDP-glucose 4,6-dehydratase YP_002041362.1 2183705 R 423368 CDS YP_002041363.1 194443459 complement(2184789..2185562) 1 NC_011080.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623; glucose-1-phosphate cytidylyltransferase 2185562 rfbF 423368002419 rfbF Salmonella enterica subsp. enterica serovar Newport str. SL254 glucose-1-phosphate cytidylyltransferase YP_002041363.1 2184789 R 423368 CDS YP_002041364.1 194442370 complement(2186558..2187106) 1 NC_011080.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 2187106 rfbC 423368002421 rfbC Salmonella enterica subsp. enterica serovar Newport str. SL254 dTDP-4-dehydrorhamnose 3,5-epimerase YP_002041364.1 2186558 R 423368 CDS YP_002041365.1 194442965 complement(2187110..2187994) 1 NC_011080.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 2187994 rfbA 423368002422 rfbA Salmonella enterica subsp. enterica serovar Newport str. SL254 glucose-1-phosphate thymidylyltransferase YP_002041365.1 2187110 R 423368 CDS YP_002041366.1 194442608 complement(2188036..2188935) 1 NC_011080.1 'with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose'; dTDP-4-dehydrorhamnose reductase 2188935 rfbD 423368002423 rfbD Salmonella enterica subsp. enterica serovar Newport str. SL254 dTDP-4-dehydrorhamnose reductase YP_002041366.1 2188036 R 423368 CDS YP_002041367.1 194443120 complement(2188935..2190020) 1 NC_011080.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 2190020 rfbB 423368002424 rfbB Salmonella enterica subsp. enterica serovar Newport str. SL254 dTDP-glucose-4,6-dehydratase YP_002041367.1 2188935 R 423368 CDS YP_002041368.1 194443041 complement(2190397..2191290) 1 NC_011080.1 'together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose'; UTP-glucose-1-phosphate uridylyltransferase 2191290 galF 423368002425 galF Salmonella enterica subsp. enterica serovar Newport str. SL254 UTP-glucose-1-phosphate uridylyltransferase YP_002041368.1 2190397 R 423368 CDS YP_002041369.1 194446744 complement(2191468..2192871) 1 NC_011080.1 WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein 2192871 wcaM 423368002426 wcaM Salmonella enterica subsp. enterica serovar Newport str. SL254 colanic acid biosynthesis protein YP_002041369.1 2191468 R 423368 CDS YP_002041370.1 194442639 complement(2192882..2194102) 1 NC_011080.1 identified by match to protein family HMM PF00534; colanic acid biosynthesis glycosyltransferase WcaL 2194102 423368002427 SNSL254_A2282 Salmonella enterica subsp. enterica serovar Newport str. SL254 colanic acid biosynthesis glycosyltransferase WcaL YP_002041370.1 2192882 R 423368 CDS YP_002041371.1 194446395 complement(2194099..2195379) 1 NC_011080.1 identified by match to protein family HMM PF04230; pyruvyl transferase 2195379 423368002428 SNSL254_A2283 Salmonella enterica subsp. enterica serovar Newport str. SL254 pyruvyl transferase YP_002041371.1 2194099 R 423368 CDS YP_002041372.1 194443185 complement(2195401..2196933) 1 NC_011080.1 identified by match to protein family HMM PF01943; colanic acid exporter 2196933 423368002429 SNSL254_A2284 Salmonella enterica subsp. enterica serovar Newport str. SL254 colanic acid exporter YP_002041372.1 2195401 R 423368 CDS YP_002041373.1 194445104 complement(2196981..2198375) 1 NC_011080.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase 2198375 423368002430 SNSL254_A2285 Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-glucose lipid carrier transferase YP_002041373.1 2196981 R 423368 CDS YP_002041374.1 194445911 complement(2198429..2199799) 1 NC_011080.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 2199799 cpsG 423368002431 cpsG Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphomannomutase YP_002041374.1 2198429 R 423368 CDS YP_002041375.1 194444598 complement(2199910..2201346) 1 NC_011080.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase 2201346 cpsB 423368002432 cpsB Salmonella enterica subsp. enterica serovar Newport str. SL254 mannose-1-phosphate guanylyltransferase YP_002041375.1 2199910 R 423368 CDS YP_002041376.1 194445091 complement(2201349..2202572) 1 NC_011080.1 identified by match to protein family HMM PF00534; glycosyl transferase 2202572 wcaI 423368002433 wcaI Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl transferase YP_002041376.1 2201349 R 423368 CDS YP_002041377.1 194445901 complement(2202569..2203042) 1 NC_011080.1 identified by match to protein family HMM PF00293; GDP-mannose mannosyl hydrolase 2203042 nudD 423368002434 nudD Salmonella enterica subsp. enterica serovar Newport str. SL254 GDP-mannose mannosyl hydrolase YP_002041377.1 2202569 R 423368 CDS YP_002041378.1 194446235 complement(2203045..2204010) 1 NC_011080.1 identified by match to protein family HMM PF01370; GDP-L-fucose synthetase 2204010 fcl 423368002435 fcl Salmonella enterica subsp. enterica serovar Newport str. SL254 GDP-L-fucose synthetase YP_002041378.1 2203045 R 423368 CDS YP_002041379.1 194444571 complement(2204013..2205134) 1 NC_011080.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 2205134 gmd 423368002436 gmd Salmonella enterica subsp. enterica serovar Newport str. SL254 GDP-mannose 4,6-dehydratase YP_002041379.1 2204013 R 423368 CDS YP_002041380.1 194444949 complement(2205158..2205712) 1 NC_011080.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF 2205712 423368002437 SNSL254_A2292 Salmonella enterica subsp. enterica serovar Newport str. SL254 colanic acid biosynthesis acetyltransferase WcaF YP_002041380.1 2205158 R 423368 CDS YP_002041381.1 194443890 complement(2205728..2206474) 1 NC_011080.1 identified by match to protein family HMM PF00535; glycosyl transferase 2206474 423368002438 SNSL254_A2293 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl transferase YP_002041381.1 2205728 R 423368 CDS YP_002041382.1 194444453 complement(2206487..2207701) 1 NC_011080.1 essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid biosynthesis protein 2207701 wcaD 423368002439 wcaD Salmonella enterica subsp. enterica serovar Newport str. SL254 colanic acid biosynthesis protein YP_002041382.1 2206487 R 423368 CDS YP_002041383.1 194442511 complement(2207676..2208893) 1 NC_011080.1 glycosyl transferase 2208893 423368002440 SNSL254_A2295 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl transferase YP_002041383.1 2207676 R 423368 CDS YP_002041384.1 194442980 complement(2208890..2209378) 1 NC_011080.1 'acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium'; colanic acid biosynthesis acetyltransferase WcaB 2209378 423368002441 SNSL254_A2296 Salmonella enterica subsp. enterica serovar Newport str. SL254 colanic acid biosynthesis acetyltransferase WcaB YP_002041384.1 2208890 R 423368 CDS YP_002041385.2 448967530 complement(2209381..2210223) 1 NC_011080.1 identified by match to protein family HMM PF00535; glycosyl transferase 2210223 423368002442 SNSL254_A2297 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl transferase YP_002041385.2 2209381 R 423368 CDS YP_002041386.1 194445793 complement(2210310..2212469) 1 NC_011080.1 Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase 2212469 423368002443 SNSL254_A2298 Salmonella enterica subsp. enterica serovar Newport str. SL254 tyrosine kinase YP_002041386.1 2210310 R 423368 CDS YP_002041387.1 194445510 complement(2212466..2212915) 1 NC_011080.1 'Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis'; tyrosine phosphatase 2212915 423368002444 SNSL254_A2299 Salmonella enterica subsp. enterica serovar Newport str. SL254 tyrosine phosphatase YP_002041387.1 2212466 R 423368 CDS YP_002041388.2 448967531 complement(2212921..2214060) 1 NC_011080.1 identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export protein 2214060 423368002445 SNSL254_A2300 Salmonella enterica subsp. enterica serovar Newport str. SL254 polysaccharide biosynthesis/export protein YP_002041388.2 2212921 R 423368 CDS YP_008083630.1 513538108 2214735..2216315 1 NC_011080.1 membrane protein 2216315 423368002446 SNSL254_A2302 Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane protein YP_008083630.1 2214735 D 423368 CDS YP_002041390.1 194442823 complement(2216401..2218257) 1 NC_011080.1 'YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs'; assembly protein 2218257 423368002447 SNSL254_A2303 Salmonella enterica subsp. enterica serovar Newport str. SL254 assembly protein YP_002041390.1 2216401 R 423368 CDS YP_002041391.1 194443601 complement(2218296..2218877) 1 NC_011080.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2218877 dcd 423368002448 dcd Salmonella enterica subsp. enterica serovar Newport str. SL254 deoxycytidine triphosphate deaminase YP_002041391.1 2218296 R 423368 CDS YP_002041392.1 194446039 complement(2218968..2219609) 1 NC_011080.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2219609 udk 423368002449 udk Salmonella enterica subsp. enterica serovar Newport str. SL254 uridine kinase YP_002041392.1 2218968 R 423368 CDS YP_002041393.1 194446551 complement(2219685..2219855) 1 NC_011080.1 hypothetical protein 2219855 423368002450 SNSL254_A2306 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041393.1 2219685 R 423368 CDS YP_002041394.1 194446115 2219934..2222930 1 NC_011080.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF05231; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; mase1 domain family 2222930 423368002451 SNSL254_A2307 Salmonella enterica subsp. enterica serovar Newport str. SL254 mase1 domain family YP_002041394.1 2219934 D 423368 CDS YP_002041395.1 194445484 complement(2222898..2223767) 1 NC_011080.1 'inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine'; 3-methyladenine DNA glycosylase 2223767 423368002452 SNSL254_A2308 Salmonella enterica subsp. enterica serovar Newport str. SL254 3-methyladenine DNA glycosylase YP_002041395.1 2222898 R 423368 CDS YP_002041396.1 194444945 2223901..2225253 1 NC_011080.1 chaperone 2225253 423368002453 SNSL254_A2309 Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone YP_002041396.1 2223901 D 423368 CDS YP_002041397.1 194444580 complement(2225490..2225606) 1 NC_011080.1 identified by glimmer; hypothetical protein 2225606 423368002455 SNSL254_A2311 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041397.1 2225490 R 423368 CDS YP_002041398.1 194442776 2225694..2226935 1 NC_011080.1 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtA 2226935 423368002456 SNSL254_A2312 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug efflux system subunit MdtA YP_002041398.1 2225694 D 423368 CDS YP_002041399.1 194443591 2226935..2230057 1 NC_011080.1 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtB 2230057 mdtB 423368002457 mdtB Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug efflux system subunit MdtB YP_002041399.1 2226935 D 423368 CDS YP_002041400.1 194442489 2230058..2233138 1 NC_011080.1 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtC 2233138 mdtC 423368002458 mdtC Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug efflux system subunit MdtC YP_002041400.1 2230058 D 423368 CDS YP_002041401.1 194443126 2233135..2234547 1 NC_011080.1 identified by match to protein family HMM PF07690; multidrug efflux system protein MdtE 2234547 423368002459 SNSL254_A2315 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug efflux system protein MdtE YP_002041401.1 2233135 D 423368 CDS YP_002041402.1 194445990 2234547..2235950 1 NC_011080.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; signal transduction histidine-protein kinase BaeS 2235950 423368002460 SNSL254_A2316 Salmonella enterica subsp. enterica serovar Newport str. SL254 signal transduction histidine-protein kinase BaeS YP_002041402.1 2234547 D 423368 CDS YP_002041403.1 194446630 2235947..2236669 1 NC_011080.1 'response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport'; DNA-binding transcriptional regulator BaeR 2236669 423368002461 SNSL254_A2317 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator BaeR YP_002041403.1 2235947 D 423368 CDS YP_002041404.1 194443460 2236938..2238140 1 NC_011080.1 hypothetical protein 2238140 423368002462 SNSL254_A2318 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041404.1 2236938 D 423368 CDS YP_008083631.1 513538109 2238140..2238856 1 NC_011080.1 inner membrane protein 2238856 423368002463 SNSL254_A2319 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane protein YP_008083631.1 2238140 D 423368 CDS YP_002041405.1 194443374 2238867..2240978 1 NC_011080.1 hypothetical protein 2240978 423368002464 SNSL254_A2320 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041405.1 2238867 D 423368 CDS YP_002041406.1 194445636 2241094..2242455 1 NC_011080.1 identified by match to protein family HMM PF01136; peptidase, U32 family 2242455 423368002465 SNSL254_A2321 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidase, U32 family YP_002041406.1 2241094 D 423368 CDS YP_002041407.1 194442450 2242945..2243952 1 NC_011080.1 hypothetical protein 2243952 423368002467 SNSL254_A2323 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041407.1 2242945 D 423368 CDS YP_002041408.1 194444028 complement(2243988..2244257) 1 NC_011080.1 Tir chaperone 2244257 423368002468 SNSL254_A2324 Salmonella enterica subsp. enterica serovar Newport str. SL254 Tir chaperone YP_002041408.1 2243988 R 423368 CDS YP_002041409.1 194445065 2244608..2244760 1 NC_011080.1 identified by glimmer; hypothetical protein 2244760 423368002469 SNSL254_A2325 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041409.1 2244608 D 423368 CDS YP_002041410.1 194446539 complement(2245223..2245339) 1 NC_011080.1 hypothetical protein 2245339 423368002470 SNSL254_A2326 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041410.1 2245223 R 423368 CDS YP_002041411.1 194443447 2245423..2246322 1 NC_011080.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2246322 423368002471 SNSL254_A2327 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipid kinase YP_002041411.1 2245423 D 423368 CDS YP_008083632.1 513538110 complement(2246375..2247427) 1 NC_011080.1 fructose-bisphosphate aldolase 2247427 423368002472 SNSL254_A2328 Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose-bisphosphate aldolase YP_008083632.1 2246375 R 423368 CDS YP_002041412.1 194444166 2247681..2248952 1 NC_011080.1 identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside transporter 2248952 yegT 423368002473 yegT Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoside transporter YP_002041412.1 2247681 D 423368 CDS YP_002041413.1 194443502 2248949..2249953 1 NC_011080.1 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase family protein 2249953 423368002474 SNSL254_A2330 Salmonella enterica subsp. enterica serovar Newport str. SL254 ADP-ribosylglycohydrolase family protein YP_002041413.1 2248949 D 423368 CDS YP_002041414.1 194443295 2249950..2250915 1 NC_011080.1 identified by match to protein family HMM PF00294; kinase PfkB family 2250915 423368002475 SNSL254_A2331 Salmonella enterica subsp. enterica serovar Newport str. SL254 kinase PfkB family YP_002041414.1 2249950 D 423368 CDS YP_002041415.1 194445966 complement(2250889..2251635) 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 2251635 423368002476 SNSL254_A2332 Salmonella enterica subsp. enterica serovar Newport str. SL254 GntR family transcriptional regulator YP_002041415.1 2250889 R 423368 CDS YP_002041416.1 194444648 complement(2251671..2252471) 1 NC_011080.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 2252471 thiD 423368002477 thiD Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphomethylpyrimidine kinase YP_002041416.1 2251671 R 423368 CDS YP_002041417.1 194446654 complement(2252458..2253255) 1 NC_011080.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2253255 thiM 423368002478 thiM Salmonella enterica subsp. enterica serovar Newport str. SL254 hydroxyethylthiazole kinase YP_002041417.1 2252458 R 423368 CDS YP_002041418.1 194443325 complement(2253354..2253539) 1 NC_011080.1 identified by glimmer; hypothetical protein 2253539 423368002479 SNSL254_A2336 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041418.1 2253354 R 423368 CDS YP_002041419.1 194445174 2253665..2253979 1 NC_011080.1 hypothetical protein 2253979 423368002480 SNSL254_A2337 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041419.1 2253665 D 423368 CDS YP_002041420.1 194444380 complement(2254023..2255045) 1 NC_011080.1 hypothetical protein 2255045 423368002481 SNSL254_A2338 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041420.1 2254023 R 423368 CDS YP_002041421.1 194443875 complement(2255061..2257547) 1 NC_011080.1 identified by match to protein family HMM PF00577; fimbrial usher protein 2257547 423368002482 SNSL254_A2339 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial usher protein YP_002041421.1 2255061 R 423368 CDS YP_002041422.1 194446677 complement(2257576..2258256) 1 NC_011080.1 identified by match to protein family HMM PF00345; pilus assembly chaperone 2258256 423368002483 SNSL254_A2340 Salmonella enterica subsp. enterica serovar Newport str. SL254 pilus assembly chaperone YP_002041422.1 2257576 R 423368 CDS YP_002041423.1 194446173 complement(2258318..2258851) 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit protein 2258851 423368002484 SNSL254_A2341 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit protein YP_002041423.1 2258318 R 423368 CDS YP_002041424.1 194444470 complement(2259130..2259411) 1 NC_011080.1 hypothetical protein 2259411 423368002485 SNSL254_A2342 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041424.1 2259130 R 423368 CDS YP_002041425.1 194442302 complement(2259689..2260798) 1 NC_011080.1 ATPase 2260798 423368002486 SNSL254_A2343 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATPase YP_002041425.1 2259689 R 423368 CDS YP_002041426.1 194442893 2260963..2262996 1 NC_011080.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2262996 metG 423368002487 metG Salmonella enterica subsp. enterica serovar Newport str. SL254 methionyl-tRNA synthetase YP_002041426.1 2260963 D 423368 CDS YP_002041427.1 194445902 2263237..2263695 1 NC_011080.1 identified by match to protein family HMM PF06998; hypothetical protein 2263695 423368002488 SNSL254_A2345 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041427.1 2263237 D 423368 CDS YP_002041428.2 448967532 2263867..2264397 1 NC_011080.1 identified by match to protein family HMM PF06998; hypothetical protein 2264397 423368002489 SNSL254_A2346 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041428.2 2263867 D 423368 CDS YP_002041429.1 194446628 complement(2264454..2264921) 1 NC_011080.1 identified by match to protein family HMM PF07308; hypothetical protein 2264921 423368002490 SNSL254_A2347 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041429.1 2264454 R 423368 CDS YP_002041430.1 194444448 complement(2264968..2265687) 1 NC_011080.1 unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT 2265687 423368002491 SNSL254_A2348 Salmonella enterica subsp. enterica serovar Newport str. SL254 two-component response-regulatory protein YehT YP_002041430.1 2264968 R 423368 CDS YP_002041431.1 194442528 complement(2265684..2267369) 1 NC_011080.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase 2267369 423368002492 SNSL254_A2349 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor histidine kinase YP_002041431.1 2265684 R 423368 CDS YP_002041432.1 194443142 2267592..2268323 1 NC_011080.1 identified by match to protein family HMM PF00376; merR family transcriptional regulator 2268323 423368002493 SNSL254_A2350 Salmonella enterica subsp. enterica serovar Newport str. SL254 merR family transcriptional regulator YP_002041432.1 2267592 D 423368 CDS YP_002041433.1 194446529 complement(2268471..2269202) 1 NC_011080.1 identified by match to protein family HMM PF00528; ABC transporter permease 2269202 423368002494 SNSL254_A2351 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002041433.1 2268471 R 423368 CDS YP_002041434.1 194443209 complement(2269186..2270133) 1 NC_011080.1 identified by match to protein family HMM PF00005; glycine betaine/carnitine/choline transport ATP-binding protein opuCA 2270133 423368002495 SNSL254_A2352 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycine betaine/carnitine/choline transport ATP-binding protein opuCA YP_002041434.1 2269186 R 423368 CDS YP_002041435.1 194442707 complement(2270126..2271259) 1 NC_011080.1 identified by match to protein family HMM PF00528; ABC transporter permease 2271259 423368002496 SNSL254_A2353 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002041435.1 2270126 R 423368 CDS YP_002041436.1 194442351 complement(2271299..2272216) 1 NC_011080.1 identified by match to protein family HMM PF04069; amine ABC transporter substrate-binding protein 2272216 423368002497 SNSL254_A2354 Salmonella enterica subsp. enterica serovar Newport str. SL254 amine ABC transporter substrate-binding protein YP_002041436.1 2271299 R 423368 CDS YP_002041437.1 194446334 complement(2272397..2274664) 1 NC_011080.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915; beta-glucosidase 2274664 423368002498 SNSL254_A2355 Salmonella enterica subsp. enterica serovar Newport str. SL254 beta-glucosidase YP_002041437.1 2272397 R 423368 CDS YP_002041438.1 194445813 2274961..2276691 1 NC_011080.1 'component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent'; D-lactate dehydrogenase 2276691 423368002499 SNSL254_A2356 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-lactate dehydrogenase YP_002041438.1 2274961 D 423368 CDS YP_002041439.1 194445434 complement(2276750..2277697) 1 NC_011080.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2277697 pbpG 423368002500 pbpG Salmonella enterica subsp. enterica serovar Newport str. SL254 D-alanyl-D-alanine endopeptidase YP_002041439.1 2276750 R 423368 CDS YP_002041440.1 194444884 complement(2277863..2278450) 1 NC_011080.1 identified by match to protein family HMM PF06930; hypothetical protein 2278450 423368002501 SNSL254_A2358 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041440.1 2277863 R 423368 CDS YP_002041441.1 194444304 2278609..2279178 1 NC_011080.1 identified by match to protein family HMM PF09335; hypothetical protein 2279178 423368002502 SNSL254_A2359 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041441.1 2278609 D 423368 CDS YP_002041442.1 194443879 complement(2279226..2279987) 1 NC_011080.1 identified by match to protein family HMM PF00106; acetoin dehydrogenase 2279987 423368002503 SNSL254_A2360 Salmonella enterica subsp. enterica serovar Newport str. SL254 acetoin dehydrogenase YP_002041442.1 2279226 R 423368 CDS YP_002041443.1 194443407 complement(2280053..2281489) 1 NC_011080.1 'may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride'; multidrug resistance outer membrane protein MdtQ 2281489 423368002504 SNSL254_A2361 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug resistance outer membrane protein MdtQ YP_002041443.1 2280053 R 423368 CDS YP_002041444.1 194443263 complement(2281540..2281698) 1 NC_011080.1 hypothetical protein 2281698 423368002505 SNSL254_A2363 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041444.1 2281540 R 423368 CDS YP_002041445.1 194442503 2281680..2281877 1 NC_011080.1 hypothetical protein 2281877 423368002506 SNSL254_A2362 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041445.1 2281680 D 423368 CDS YP_002041446.1 194444008 complement(2281948..2282943) 1 NC_011080.1 identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase C 2282943 423368002507 SNSL254_A2364 Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA-dihydrouridine synthase C YP_002041446.1 2281948 R 423368 CDS YP_002041447.1 194443784 complement(2282995..2284188) 1 NC_011080.1 catalyzes the formation of catechol from salicylate; salicylate hydroxylase 2284188 423368002508 SNSL254_A2365 Salmonella enterica subsp. enterica serovar Newport str. SL254 salicylate hydroxylase YP_002041447.1 2282995 R 423368 CDS YP_002041448.1 194443255 complement(2284203..2284847) 1 NC_011080.1 identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262; maleylacetoacetate isomerase 2284847 maiA 423368002509 maiA Salmonella enterica subsp. enterica serovar Newport str. SL254 maleylacetoacetate isomerase YP_002041448.1 2284203 R 423368 CDS YP_002041449.1 194444034 complement(2284856..2285557) 1 NC_011080.1 identified by match to protein family HMM PF01557; FAA-hydrolase family protein 2285557 423368002510 SNSL254_A2367 Salmonella enterica subsp. enterica serovar Newport str. SL254 FAA-hydrolase family protein YP_002041449.1 2284856 R 423368 CDS YP_002041450.1 194444288 complement(2285573..2286610) 1 NC_011080.1 identified by match to protein family HMM PF07883; match to protein family HMM TIGR02272; gentisate 1,2-dioxygenase 2286610 gtdA 423368002511 gtdA Salmonella enterica subsp. enterica serovar Newport str. SL254 gentisate 1,2-dioxygenase YP_002041450.1 2285573 R 423368 CDS YP_002041451.1 194443907 complement(2286622..2287980) 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; 4-hydroxybenzoate transporter 2287980 423368002512 SNSL254_A2369 Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxybenzoate transporter YP_002041451.1 2286622 R 423368 CDS YP_008083633.1 513538111 2288106..2289014 1 NC_011080.1 transcriptional regulator 2289014 423368002513 SNSL254_A2370 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_008083633.1 2288106 D 423368 CDS YP_002041452.1 194446715 2289146..2289544 1 NC_011080.1 identified by match to protein family HMM PF03788; hypothetical protein 2289544 423368002514 SNSL254_A2371 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041452.1 2289146 D 423368 CDS YP_002041453.1 194444743 2289541..2290236 1 NC_011080.1 identified by match to protein family HMM PF04172; match to protein family HMM TIGR00659; hypothetical protein 2290236 423368002515 SNSL254_A2372 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041453.1 2289541 D 423368 CDS YP_002041454.1 194445222 2290390..2291274 1 NC_011080.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2291274 cdd 423368002516 cdd Salmonella enterica subsp. enterica serovar Newport str. SL254 cytidine deaminase YP_002041454.1 2290390 D 423368 CDS YP_002041455.1 194444390 2291451..2292170 1 NC_011080.1 identified by match to protein family HMM PF02698; hypothetical protein 2292170 423368002517 SNSL254_A2374 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041455.1 2291451 D 423368 CDS YP_002041456.1 194442634 2292173..2292412 1 NC_011080.1 hypothetical protein 2292412 423368002518 SNSL254_A2375 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041456.1 2292173 D 423368 CDS YP_002041457.1 194442791 2292617..2293858 1 NC_011080.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2293858 423368002519 SNSL254_A2376 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase YP_002041457.1 2292617 D 423368 CDS YP_002041458.1 194446223 2293852..2295087 1 NC_011080.1 'catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines'; dihydropyrimidine dehydrogenase 2295087 423368002520 SNSL254_A2377 Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydropyrimidine dehydrogenase YP_002041458.1 2293852 D 423368 CDS YP_002041459.1 194446429 complement(2295162..2296172) 1 NC_011080.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein 2296172 mglC 423368002521 mglC Salmonella enterica subsp. enterica serovar Newport str. SL254 beta-methylgalactoside transporter inner membrane protein YP_002041459.1 2295162 R 423368 CDS YP_002041460.1 194444529 complement(2296188..2297708) 1 NC_011080.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 2297708 423368002522 SNSL254_A2379 Salmonella enterica subsp. enterica serovar Newport str. SL254 galactose/methyl galaxtoside transporter ATP-binding protein YP_002041460.1 2296188 R 423368 CDS YP_002041462.1 194443772 complement(2297842..2298840) 1 NC_011080.1 identified by match to protein family HMM PF00532; D-galactose-binding periplasmic protein 2298840 423368002523 SNSL254_A2381 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-galactose-binding periplasmic protein YP_002041462.1 2297842 R 423368 CDS YP_002041463.1 194445410 complement(2299339..2300361) 1 NC_011080.1 negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS 2300361 galS 423368002524 galS Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator GalS YP_002041463.1 2299339 R 423368 CDS YP_002041464.1 194445054 complement(2300511..2301653) 1 NC_011080.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235; hypothetical protein 2301653 423368002525 SNSL254_A2383 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041464.1 2300511 R 423368 CDS YP_002041465.1 194445865 complement(2301668..2302336) 1 NC_011080.1 'involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer'; GTP cyclohydrolase I 2302336 folE 423368002526 folE Salmonella enterica subsp. enterica serovar Newport str. SL254 GTP cyclohydrolase I YP_002041465.1 2301668 R 423368 CDS YP_002041466.1 194442948 2302666..2303523 1 NC_011080.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821; S-formylglutathione hydrolase 2303523 fghA 423368002527 fghA Salmonella enterica subsp. enterica serovar Newport str. SL254 S-formylglutathione hydrolase YP_002041466.1 2302666 D 423368 CDS YP_002041467.1 194446065 complement(2303512..2303946) 1 NC_011080.1 identified by match to protein family HMM PF01381; transcriptional regulator 2303946 423368002528 SNSL254_A2386 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002041467.1 2303512 R 423368 CDS YP_002041468.1 194442459 complement(2303906..2305273) 1 NC_011080.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 2305273 423368002529 SNSL254_A2387 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-serine ammonia-lyase YP_002041468.1 2303906 R 423368 CDS YP_002041469.1 194443959 2305490..2306377 1 NC_011080.1 identified by match to protein family HMM PF00702; match to protein family HMM PF06888; match to protein family HMM PF08282; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 2306377 serB 423368002530 serB Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoserine phosphatase SerB YP_002041469.1 2305490 D 423368 CDS YP_002041470.1 194443441 2306410..2307732 1 NC_011080.1 identified by match to protein family HMM PF07690; regulatory protein UhpC 2307732 423368002531 SNSL254_A2389 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein UhpC YP_002041470.1 2306410 D 423368 CDS YP_002041471.1 194446109 complement(2307776..2309728) 1 NC_011080.1 'Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein'; colicin I receptor 2309728 423368002532 SNSL254_A2390 Salmonella enterica subsp. enterica serovar Newport str. SL254 colicin I receptor YP_002041471.1 2307776 R 423368 CDS YP_002041472.1 194445176 complement(2310112..2311581) 1 NC_011080.1 identified by match to protein family HMM PF00324; lysine transporter 2311581 423368002533 SNSL254_A2391 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysine transporter YP_002041472.1 2310112 R 423368 CDS YP_002041473.1 194446228 complement(2311771..2312634) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 2312634 423368002534 SNSL254_A2392 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator YP_002041473.1 2311771 R 423368 CDS YP_002041475.1 194442801 2312755..2313804 1 NC_011080.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698; hypothetical protein 2313804 423368002535 SNSL254_A2393 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041475.1 2312755 D 423368 CDS YP_002041476.1 194442304 2313883..2314740 1 NC_011080.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2314740 423368002536 SNSL254_A2395 Salmonella enterica subsp. enterica serovar Newport str. SL254 endonuclease IV YP_002041476.1 2313883 D 423368 CDS YP_002041477.1 194444019 complement(2314805..2316493) 1 NC_011080.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC 2316493 423368002537 SNSL254_A2396 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system fructose-specific transporter subunit IIBC YP_002041477.1 2314805 R 423368 CDS YP_002041478.1 194443586 complement(2316510..2317448) 1 NC_011080.1 'converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers'; 1-phosphofructokinase 2317448 fruK 423368002538 fruK Salmonella enterica subsp. enterica serovar Newport str. SL254 1-phosphofructokinase YP_002041478.1 2316510 R 423368 CDS YP_002041479.1 194445639 complement(2317448..2318578) 1 NC_011080.1 'phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr'; PTS system fructose-specific transporter subunit IIA/HPr protein 2318578 fruB 423368002539 fruB Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system fructose-specific transporter subunit IIA/HPr protein YP_002041479.1 2317448 R 423368 CDS YP_002041480.1 194444995 2318599..2318730 1 NC_011080.1 identified by glimmer; hypothetical protein 2318730 423368002540 SNSL254_A2399 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041480.1 2318599 D 423368 CDS YP_002041481.1 194442384 2318815..2318937 1 NC_011080.1 identified by glimmer; hypothetical protein 2318937 423368002541 SNSL254_A2400 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041481.1 2318815 D 423368 CDS YP_002041482.1 194446030 2318947..2320128 1 NC_011080.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00899; sugar efflux transporter B 2320128 423368002542 SNSL254_A2401 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar efflux transporter B YP_002041482.1 2318947 D 423368 CDS YP_002041483.1 194443062 complement(2320192..2320857) 1 NC_011080.1 hypothetical protein 2320857 423368002543 SNSL254_A2402 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041483.1 2320192 R 423368 CDS YP_002041484.1 194445295 complement(2320859..2320981) 1 NC_011080.1 hypothetical protein 2320981 423368002544 SNSL254_A2403 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041484.1 2320859 R 423368 CDS YP_002041485.1 194445786 complement(2321369..2321623) 1 NC_011080.1 hypothetical protein 2321623 423368002545 SNSL254_A2404 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041485.1 2321369 R 423368 CDS YP_002041486.1 194443868 2321948..2322520 1 NC_011080.1 'Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein'; elongation factor P 2322520 423368002546 SNSL254_A2405 Salmonella enterica subsp. enterica serovar Newport str. SL254 elongation factor P YP_002041486.1 2321948 D 423368 CDS YP_002041487.1 194444356 2322705..2323718 1 NC_011080.1 identified by match to protein family HMM PF02492; cobalamin synthesis protein P47K 2323718 423368002547 SNSL254_A2406 Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalamin synthesis protein P47K YP_002041487.1 2322705 D 423368 CDS YP_002041488.1 194443186 2323721..2324467 1 NC_011080.1 identified by match to protein family HMM PF01569; hypothetical protein 2324467 423368002548 SNSL254_A2407 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041488.1 2323721 D 423368 CDS YP_002041489.2 448967533 2324881..2325453 1 NC_011080.1 'by similarity, Spr seems to have peptidase activity; involved in thermoresistance'; outer membrane lipoprotein 2325453 spr 423368002549 spr Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein YP_002041489.2 2324881 D 423368 CDS YP_002041490.1 194446560 2325778..2327334 1 NC_011080.1 identified by match to protein family HMM PF00563; hypothetical protein 2327334 423368002550 SNSL254_A2409 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041490.1 2325778 D 423368 CDS YP_002041491.1 194442375 2327441..2329246 1 NC_011080.1 identified by match to protein family HMM PF00496; extracellular solute-binding protein 2329246 423368002551 SNSL254_A2410 Salmonella enterica subsp. enterica serovar Newport str. SL254 extracellular solute-binding protein YP_002041491.1 2327441 D 423368 CDS YP_002041492.1 194444432 2329256..2330350 1 NC_011080.1 identified by match to protein family HMM PF00528; ABC transporter permease 2330350 423368002552 SNSL254_A2411 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002041492.1 2329256 D 423368 CDS YP_002041493.1 194444352 2330350..2331375 1 NC_011080.1 identified by match to protein family HMM PF00528; ABC transporter permease 2331375 423368002553 SNSL254_A2412 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002041493.1 2330350 D 423368 CDS YP_002041494.1 194445402 2331377..2332966 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; glutathione import ATP-binding protein GsiA 2332966 423368002554 SNSL254_A2413 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione import ATP-binding protein GsiA YP_002041494.1 2331377 D 423368 CDS YP_002041495.1 194445023 complement(2332970..2333314) 1 NC_011080.1 hypothetical protein 2333314 423368002555 SNSL254_A2414 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041495.1 2332970 R 423368 CDS YP_002041496.1 194446697 complement(2333705..2334895) 1 NC_011080.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein 2334895 bcr 423368002556 bcr Salmonella enterica subsp. enterica serovar Newport str. SL254 bicyclomycin/multidrug efflux system protein YP_002041496.1 2333705 R 423368 CDS YP_002041497.1 194446350 complement(2334923..2335618) 1 NC_011080.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A 2335618 rsuA 423368002557 rsuA Salmonella enterica subsp. enterica serovar Newport str. SL254 16S rRNA pseudouridylate synthase A YP_002041497.1 2334923 R 423368 CDS YP_002041498.1 194442899 2335770..2337530 1 NC_011080.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase 2337530 423368002558 SNSL254_A2417 Salmonella enterica subsp. enterica serovar Newport str. SL254 helicase YP_002041498.1 2335770 D 423368 CDS YP_002041499.1 194442256 2337655..2337939 1 NC_011080.1 'the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response'; 50S ribosomal protein L25 2337939 rplY 423368002559 rplY Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L25 YP_002041499.1 2337655 D 423368 CDS YP_002041500.1 194444184 complement(2338047..2338667) 1 NC_011080.1 hypothetical protein 2338667 423368002560 SNSL254_A2419 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041500.1 2338047 R 423368 CDS YP_002041501.1 194443560 complement(2338695..2339702) 1 NC_011080.1 identified by match to protein family HMM PF04245; nucleoid-associated protein NdpA 2339702 ndpA 423368002561 ndpA Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoid-associated protein NdpA YP_002041501.1 2338695 R 423368 CDS YP_002041502.1 194444688 2339882..2340109 1 NC_011080.1 identified by match to protein family HMM PF07208; hypothetical protein 2340109 423368002562 SNSL254_A2421 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041502.1 2339882 D 423368 CDS YP_002041503.1 194442624 2340141..2341901 1 NC_011080.1 identified by match to protein family HMM PF00884; hypothetical protein 2341901 423368002563 SNSL254_A2422 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041503.1 2340141 D 423368 CDS YP_002041504.1 194443893 complement(2342672..2345038) 1 NC_011080.1 leucine-rich repeat protein 2345038 423368002565 SNSL254_A2425 Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine-rich repeat protein YP_002041504.1 2342672 R 423368 CDS YP_002041505.1 194444702 complement(2345355..2345474) 1 NC_011080.1 identified by glimmer; hypothetical protein 2345474 423368002566 SNSL254_A2426 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041505.1 2345355 R 423368 CDS YP_002041506.1 194444044 complement(2345706..2346548) 1 NC_011080.1 identified by match to protein family HMM PF03406; side tail fiber protein 2346548 423368002567 SNSL254_A2427 Salmonella enterica subsp. enterica serovar Newport str. SL254 side tail fiber protein YP_002041506.1 2345706 R 423368 CDS YP_002041508.1 194444138 complement(2347181..2347738) 1 NC_011080.1 identified by match to protein family HMM PF09411; hypothetical protein 2347738 423368002569 SNSL254_A2429 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041508.1 2347181 R 423368 CDS YP_002041509.1 194442551 2348474..2349121 1 NC_011080.1 nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2349121 423368002570 SNSL254_A2430 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator NarP YP_002041509.1 2348474 D 423368 CDS YP_002041510.1 194445160 complement(2349165..2350208) 1 NC_011080.1 identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 2350208 423368002571 SNSL254_A2431 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c-type biogenesis protein H2 YP_002041510.1 2349165 R 423368 CDS YP_002041511.1 194445164 complement(2350205..2350762) 1 NC_011080.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interchange protein DsbE 2350762 423368002572 SNSL254_A2432 Salmonella enterica subsp. enterica serovar Newport str. SL254 thiol:disulfide interchange protein DsbE YP_002041511.1 2350205 R 423368 CDS YP_002041512.1 194444497 complement(2350759..2352690) 1 NC_011080.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF 2352690 ccmF 423368002573 ccmF Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c-type biogenesis protein CcmF YP_002041512.1 2350759 R 423368 CDS YP_002041513.1 194444502 complement(2352687..2353166) 1 NC_011080.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 2353166 423368002574 SNSL254_A2434 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c-type biogenesis protein CcmE YP_002041513.1 2352687 R 423368 CDS YP_002041514.1 194443088 complement(2353163..2353375) 1 NC_011080.1 identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; hypothetical protein 2353375 423368002575 SNSL254_A2435 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041514.1 2353163 R 423368 CDS YP_002041515.1 194443829 complement(2353372..2354118) 1 NC_011080.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC superfamily protein 2354118 423368002576 SNSL254_A2436 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC superfamily protein YP_002041515.1 2353372 R 423368 CDS YP_002041516.1 194445603 complement(2354161..2354820) 1 NC_011080.1 identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB 2354820 ccmB 423368002577 ccmB Salmonella enterica subsp. enterica serovar Newport str. SL254 heme exporter protein CcmB YP_002041516.1 2354161 R 423368 CDS YP_002041517.1 194445959 complement(2354817..2355440) 1 NC_011080.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2355440 ccmA 423368002578 ccmA Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c biogenesis protein CcmA YP_002041517.1 2354817 R 423368 CDS YP_002041518.1 194444029 complement(2355455..2356057) 1 NC_011080.1 with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC 2356057 napC 423368002579 napC Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c-type protein NapC YP_002041518.1 2355455 R 423368 CDS YP_002041519.1 194444992 complement(2356067..2356516) 1 NC_011080.1 small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit 2356516 napB 423368002580 napB Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate reductase cytochrome c-type subunit YP_002041519.1 2356067 R 423368 CDS YP_002041520.1 194443563 complement(2356632..2357501) 1 NC_011080.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 2357501 napH 423368002581 napH Salmonella enterica subsp. enterica serovar Newport str. SL254 quinol dehydrogenase membrane component YP_002041520.1 2356632 R 423368 CDS YP_002041521.1 194446796 complement(2357488..2358183) 1 NC_011080.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 2358183 napG 423368002582 napG Salmonella enterica subsp. enterica serovar Newport str. SL254 quinol dehydrogenase periplasmic component YP_002041521.1 2357488 R 423368 CDS YP_002041522.1 194443775 complement(2358190..2360676) 1 NC_011080.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2360676 napA 423368002583 napA Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrate reductase catalytic subunit YP_002041522.1 2358190 R 423368 CDS YP_008083634.1 513538112 complement(2360673..2360936) 1 NC_011080.1 periplasmic nitrate reductase assembly protein 2360936 napD 423368002584 napD Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic nitrate reductase assembly protein YP_008083634.1 2360673 R 423368 CDS YP_002041523.1 194442597 complement(2360926..2361417) 1 NC_011080.1 Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein 2361417 napF 423368002585 napF Salmonella enterica subsp. enterica serovar Newport str. SL254 ferredoxin-type protein YP_002041523.1 2360926 R 423368 CDS YP_002041524.1 194443174 2361819..2362325 1 NC_011080.1 'serine protease inhibitor, inhibits trypsin and other proteases'; ecotin 2362325 423368002586 SNSL254_A2446 Salmonella enterica subsp. enterica serovar Newport str. SL254 ecotin YP_002041524.1 2361819 D 423368 CDS YP_002041525.1 194445903 complement(2362525..2364168) 1 NC_011080.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component 2364168 423368002587 SNSL254_A2447 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug transporter membrane protein/ATP-binding component YP_002041525.1 2362525 R 423368 CDS YP_002041526.1 194446292 complement(2364244..2364894) 1 NC_011080.1 identified by match to protein family HMM PF03171; alpha-ketoglutarate-dependent dioxygenase AlkB 2364894 423368002588 SNSL254_A2448 Salmonella enterica subsp. enterica serovar Newport str. SL254 alpha-ketoglutarate-dependent dioxygenase AlkB YP_002041526.1 2364244 R 423368 CDS YP_002041527.1 194444615 complement(2364897..2365955) 1 NC_011080.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589; regulatory protein ada 2365955 423368002589 SNSL254_A2449 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein ada YP_002041527.1 2364897 R 423368 CDS YP_002041528.1 194446152 complement(2366039..2367091) 1 NC_011080.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE 2367091 423368002590 SNSL254_A2450 Salmonella enterica subsp. enterica serovar Newport str. SL254 thiamine biosynthesis lipoprotein ApbE YP_002041528.1 2366039 R 423368 CDS YP_002041529.1 194445432 complement(2367206..2368342) 1 NC_011080.1 allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C 2368342 423368002591 SNSL254_A2451 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane porin protein C YP_002041529.1 2367206 R 423368 CDS YP_002041530.1 194445759 2369071..2371740 1 NC_011080.1 identified by match to protein family HMM PF01627; match to protein family HMM PF02518; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2371740 423368002593 SNSL254_A2454 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphotransfer intermediate protein in two-component regulatory system with RcsBC YP_002041530.1 2369071 D 423368 CDS YP_002041531.1 194446271 2371757..2372407 1 NC_011080.1 two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2372407 rcsB 423368002594 rcsB Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator RcsB YP_002041531.1 2371757 D 423368 CDS YP_002041532.1 194444742 complement(2372510..2375356) 1 NC_011080.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF09456; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 2375356 423368002595 SNSL254_A2456 Salmonella enterica subsp. enterica serovar Newport str. SL254 hybrid sensory kinase in two-component regulatory system with RcsB and YojN YP_002041532.1 2372510 R 423368 CDS YP_002041533.1 194445296 complement(2375474..2378110) 1 NC_011080.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2378110 gyrA 423368002596 gyrA Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA gyrase subunit A YP_002041533.1 2375474 R 423368 CDS YP_002041534.1 194443751 complement(2378520..2379722) 1 NC_011080.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase 2379722 423368002597 SNSL254_A2458 Salmonella enterica subsp. enterica serovar Newport str. SL254 mandelate racemase YP_002041534.1 2378520 R 423368 CDS YP_002041535.1 194444282 complement(2379737..2381062) 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; permease 2381062 423368002598 SNSL254_A2459 Salmonella enterica subsp. enterica serovar Newport str. SL254 permease YP_002041535.1 2379737 R 423368 CDS YP_002041536.1 194442653 2381112..2381996 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2381996 423368002599 SNSL254_A2460 Salmonella enterica subsp. enterica serovar Newport str. SL254 GntR family transcriptional regulator YP_002041536.1 2381112 D 423368 CDS YP_002041537.1 194443409 2382079..2382807 1 NC_011080.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2382807 ubiG 423368002600 ubiG Salmonella enterica subsp. enterica serovar Newport str. SL254 3-demethylubiquinone-9 3-methyltransferase YP_002041537.1 2382079 D 423368 CDS YP_002041538.1 194444716 2383163..2385448 1 NC_011080.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2385448 nrdA 423368002601 nrdA Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonucleotide-diphosphate reductase subunit alpha YP_002041538.1 2383163 D 423368 CDS YP_002041539.1 194442577 2385561..2386691 1 NC_011080.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2386691 nrdB 423368002602 nrdB Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonucleotide-diphosphate reductase subunit beta YP_002041539.1 2385561 D 423368 CDS YP_002041540.1 194446511 2386691..2386945 1 NC_011080.1 'plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases'; 2Fe-2S ferredoxin 2386945 423368002603 SNSL254_A2464 Salmonella enterica subsp. enterica serovar Newport str. SL254 2Fe-2S ferredoxin YP_002041540.1 2386691 D 423368 CDS YP_002041541.1 194445899 complement(2386947..2388137) 1 NC_011080.1 identified by match to protein family HMM PF07690; quinolone resistence NorA protein 2388137 423368002604 SNSL254_A2465 Salmonella enterica subsp. enterica serovar Newport str. SL254 quinolone resistence NorA protein YP_002041541.1 2386947 R 423368 CDS YP_002041542.1 194445177 2388299..2389177 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2389177 423368002605 SNSL254_A2466 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002041542.1 2388299 D 423368 CDS YP_002041543.1 194446721 complement(2389292..2390362) 1 NC_011080.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 2390362 glpQ 423368002606 glpQ Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerophosphodiester phosphodiesterase YP_002041543.1 2389292 R 423368 CDS YP_002041544.1 194443850 complement(2390367..2391725) 1 NC_011080.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 2391725 glpT 423368002607 glpT Salmonella enterica subsp. enterica serovar Newport str. SL254 sn-glycerol-3-phosphate transporter YP_002041544.1 2390367 R 423368 CDS YP_002041545.1 194443330 2391998..2393626 1 NC_011080.1 'anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor'; sn-glycerol-3-phosphate dehydrogenase subunit A 2393626 glpA 423368002608 glpA Salmonella enterica subsp. enterica serovar Newport str. SL254 sn-glycerol-3-phosphate dehydrogenase subunit A YP_002041545.1 2391998 D 423368 CDS YP_002041546.1 194442864 2393616..2394875 1 NC_011080.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2394875 glpB 423368002609 glpB Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_002041546.1 2393616 D 423368 CDS YP_002041547.1 194444150 2394872..2396062 1 NC_011080.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2396062 glpC 423368002610 glpC Salmonella enterica subsp. enterica serovar Newport str. SL254 sn-glycerol-3-phosphate dehydrogenase subunit C YP_002041547.1 2394872 D 423368 CDS YP_002041548.1 194445831 2396488..2397510 1 NC_011080.1 'similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system'; deubiquitinase 2397510 423368002611 SNSL254_A2472 Salmonella enterica subsp. enterica serovar Newport str. SL254 deubiquitinase YP_002041548.1 2396488 D 423368 CDS YP_002041549.1 194445589 complement(2397620..2397769) 1 NC_011080.1 competence damage-inducible protein A 2397769 423368002612 SNSL254_A2473 Salmonella enterica subsp. enterica serovar Newport str. SL254 competence damage-inducible protein A YP_002041549.1 2397620 R 423368 CDS YP_002041550.1 194443780 complement(2397802..2398605) 1 NC_011080.1 identified by match to protein family HMM PF03328; aldolase 2398605 423368002613 SNSL254_A2474 Salmonella enterica subsp. enterica serovar Newport str. SL254 aldolase YP_002041550.1 2397802 R 423368 CDS YP_002041551.1 194444303 complement(2398631..2399920) 1 NC_011080.1 identified by match to protein family HMM PF07690; major facilitator family protein 2399920 423368002614 SNSL254_A2475 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator family protein YP_002041551.1 2398631 R 423368 CDS YP_002041552.1 194442599 complement(2399976..2401181) 1 NC_011080.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein 2401181 423368002615 SNSL254_A2476 Salmonella enterica subsp. enterica serovar Newport str. SL254 mandelate racemase/muconate lactonizing protein YP_002041552.1 2399976 R 423368 CDS YP_002041553.1 194443488 complement(2401195..2401974) 1 NC_011080.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator 2401974 423368002616 SNSL254_A2477 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002041553.1 2401195 R 423368 CDS YP_002041554.1 194442871 complement(2402227..2403423) 1 NC_011080.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR00200; competence damage-inducible protein A 2403423 423368002617 SNSL254_A2478 Salmonella enterica subsp. enterica serovar Newport str. SL254 competence damage-inducible protein A YP_002041554.1 2402227 R 423368 CDS YP_002041555.1 194443887 complement(2403538..2404212) 1 NC_011080.1 identified by match to protein family HMM PF07437; hypothetical protein 2404212 423368002618 SNSL254_A2479 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041555.1 2403538 R 423368 CDS YP_002041556.1 194446541 2404359..2404784 1 NC_011080.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 2404784 423368002619 SNSL254_A2480 Salmonella enterica subsp. enterica serovar Newport str. SL254 NUDIX family hydrolase YP_002041556.1 2404359 D 423368 CDS YP_002041557.1 194442758 complement(2404829..2405434) 1 NC_011080.1 identified by match to protein family HMM PF00300; Ais protein 2405434 423368002620 SNSL254_A2481 Salmonella enterica subsp. enterica serovar Newport str. SL254 Ais protein YP_002041557.1 2404829 R 423368 CDS YP_002041558.1 194445828 2405714..2406871 1 NC_011080.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2406871 423368002621 SNSL254_A2482 Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YP_002041558.1 2405714 D 423368 CDS YP_002041559.1 194443311 2406874..2407857 1 NC_011080.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2407857 423368002622 SNSL254_A2483 Salmonella enterica subsp. enterica serovar Newport str. SL254 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_002041559.1 2406874 D 423368 CDS YP_002041560.1 194445983 2407854..2409836 1 NC_011080.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2409836 423368002623 SNSL254_A2484 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_002041560.1 2407854 D 423368 CDS YP_002041561.1 194444910 2409833..2410732 1 NC_011080.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 2410732 423368002624 SNSL254_A2485 Salmonella enterica subsp. enterica serovar Newport str. SL254 polysaccharide deacetylase YP_002041561.1 2409833 D 423368 CDS YP_002041562.1 194445284 2410729..2412375 1 NC_011080.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2412375 arnT 423368002625 arnT Salmonella enterica subsp. enterica serovar Newport str. SL254 4-amino-4-deoxy-L-arabinose transferase YP_002041562.1 2410729 D 423368 CDS YP_002041563.1 194443614 2412372..2412707 1 NC_011080.1 identified by match to protein family HMM PF00893; hypothetical protein 2412707 423368002626 SNSL254_A2487 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041563.1 2412372 D 423368 CDS YP_002041564.1 194445451 2412707..2413084 1 NC_011080.1 hypothetical protein 2413084 423368002627 SNSL254_A2488 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041564.1 2412707 D 423368 CDS YP_002041565.1 194444142 complement(2413079..2413336) 1 NC_011080.1 signal transduction protein PmrD 2413336 423368002628 SNSL254_A2489 Salmonella enterica subsp. enterica serovar Newport str. SL254 signal transduction protein PmrD YP_002041565.1 2413079 R 423368 CDS YP_002041566.1 194444926 complement(2413434..2414801) 1 NC_011080.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase 2414801 menE 423368002629 menE Salmonella enterica subsp. enterica serovar Newport str. SL254 O-succinylbenzoic acid--CoA ligase YP_002041566.1 2413434 R 423368 CDS YP_002041567.1 194444463 complement(2414798..2415760) 1 NC_011080.1 'catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate'; O-succinylbenzoate synthase 2415760 menC 423368002630 menC Salmonella enterica subsp. enterica serovar Newport str. SL254 O-succinylbenzoate synthase YP_002041567.1 2414798 R 423368 CDS YP_002041568.1 194443464 complement(2415760..2416617) 1 NC_011080.1 'catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA'; naphthoate synthase 2416617 menB 423368002631 menB Salmonella enterica subsp. enterica serovar Newport str. SL254 naphthoate synthase YP_002041568.1 2415760 R 423368 CDS YP_002041569.1 194445608 complement(2416632..2417390) 1 NC_011080.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase 2417390 423368002632 SNSL254_A2493 Salmonella enterica subsp. enterica serovar Newport str. SL254 acyl-CoA thioester hydrolase YP_002041569.1 2416632 R 423368 CDS YP_002041570.1 194444822 complement(2417387..2419057) 1 NC_011080.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 2419057 menD 423368002633 menD Salmonella enterica subsp. enterica serovar Newport str. SL254 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_002041570.1 2417387 R 423368 CDS YP_002041571.1 194443736 complement(2419143..2420438) 1 NC_011080.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; menaquinone-specific isochorismate synthase 2420438 423368002634 SNSL254_A2495 Salmonella enterica subsp. enterica serovar Newport str. SL254 menaquinone-specific isochorismate synthase YP_002041571.1 2419143 R 423368 CDS YP_002041572.1 194445216 complement(2420539..2420844) 1 NC_011080.1 identified by match to protein family HMM PF05957; hypothetical protein 2420844 423368002635 SNSL254_A2496 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041572.1 2420539 R 423368 CDS YP_002041573.1 194442246 complement(2420899..2421360) 1 NC_011080.1 identified by match to protein family HMM PF00583; hypothetical protein 2421360 423368002636 SNSL254_A2498 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041573.1 2420899 R 423368 CDS YP_002041574.2 448967534 2421421..2422338 1 NC_011080.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2422338 423368002637 SNSL254_A2497 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease Z YP_002041574.2 2421421 D 423368 CDS YP_002041575.1 194443457 2422404..2423408 1 NC_011080.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheW 2423408 423368002638 SNSL254_A2499 Salmonella enterica subsp. enterica serovar Newport str. SL254 chemotaxis protein CheW YP_002041575.1 2422404 D 423368 CDS YP_002041576.1 194442785 complement(2423549..2425006) 1 NC_011080.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 2425006 nuoN 423368002639 nuoN Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit N YP_002041576.1 2423549 R 423368 CDS YP_002041577.1 194443272 complement(2425013..2426542) 1 NC_011080.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2426542 nuoM 423368002640 nuoM Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit M YP_002041577.1 2425013 R 423368 CDS YP_002041578.1 194443572 complement(2426619..2428460) 1 NC_011080.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2428460 nuoL 423368002641 nuoL Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit L YP_002041578.1 2426619 R 423368 CDS YP_002041579.1 194443747 complement(2428457..2428759) 1 NC_011080.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 2428759 nuoK 423368002642 nuoK Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit K YP_002041579.1 2428457 R 423368 CDS YP_002041580.1 194445907 complement(2428756..2429310) 1 NC_011080.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2429310 nuoJ 423368002643 nuoJ Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit J YP_002041580.1 2428756 R 423368 CDS YP_002041581.1 194446441 complement(2429321..2429863) 1 NC_011080.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2429863 nuoI 423368002644 nuoI Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit I YP_002041581.1 2429321 R 423368 CDS YP_002041582.1 194444938 complement(2429878..2430855) 1 NC_011080.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 2430855 nuoH 423368002645 nuoH Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit H YP_002041582.1 2429878 R 423368 CDS YP_002041583.1 194445161 complement(2430852..2433578) 1 NC_011080.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2433578 nuoG 423368002646 nuoG Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit G YP_002041583.1 2430852 R 423368 CDS YP_002041584.1 194443680 complement(2433609..2434946) 1 NC_011080.1 'shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase'; NADH dehydrogenase I subunit F 2434946 nuoF 423368002647 nuoF Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase I subunit F YP_002041584.1 2433609 R 423368 CDS YP_002041585.1 194444429 complement(2434943..2435443) 1 NC_011080.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 2435443 nuoE 423368002648 nuoE Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit E YP_002041585.1 2434943 R 423368 CDS YP_002041586.1 194442956 complement(2435446..2437248) 1 NC_011080.1 'NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms'; NADH:ubiquinone oxidoreductase subunit C/D 2437248 nuoC 423368002649 nuoC Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH:ubiquinone oxidoreductase subunit C/D YP_002041586.1 2435446 R 423368 CDS YP_002041587.1 194443155 complement(2437335..2437997) 1 NC_011080.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2437997 nuoB 423368002650 nuoB Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit B YP_002041587.1 2437335 R 423368 CDS YP_002041588.1 194444990 complement(2438013..2438456) 1 NC_011080.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2438456 nuoA 423368002651 nuoA Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH dehydrogenase subunit A YP_002041588.1 2438013 R 423368 CDS YP_002041589.1 194445209 complement(2438851..2439003) 1 NC_011080.1 hypothetical protein 2439003 423368002652 SNSL254_A2513 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041589.1 2438851 R 423368 CDS YP_002041590.1 194443054 complement(2439083..2440021) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; HTH-type transcriptional regulator PecT 2440021 423368002653 SNSL254_A2514 Salmonella enterica subsp. enterica serovar Newport str. SL254 HTH-type transcriptional regulator PecT YP_002041590.1 2439083 R 423368 CDS YP_002041591.1 194443855 complement(2440686..2440847) 1 NC_011080.1 hypothetical protein 2440847 423368002654 SNSL254_A2515 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041591.1 2440686 R 423368 CDS YP_002041592.1 194445955 2440953..2442167 1 NC_011080.1 'broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor'; aminotransferase 2442167 423368002655 SNSL254_A2516 Salmonella enterica subsp. enterica serovar Newport str. SL254 aminotransferase YP_002041592.1 2440953 D 423368 CDS YP_002041593.1 194442594 2442261..2442860 1 NC_011080.1 identified by match to protein family HMM PF01966; hypothetical protein 2442860 423368002656 SNSL254_A2517 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041593.1 2442261 D 423368 CDS YP_002041594.1 194445111 complement(2442966..2444792) 1 NC_011080.1 identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808; citrate transporter 2444792 423368002657 SNSL254_A2518 Salmonella enterica subsp. enterica serovar Newport str. SL254 citrate transporter YP_002041594.1 2442966 R 423368 CDS YP_002041595.1 194445923 complement(2444869..2445528) 1 NC_011080.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphatase 2445528 423368002658 SNSL254_A2519 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphatase YP_002041595.1 2444869 R 423368 CDS YP_002041596.1 194444362 complement(2445539..2446078) 1 NC_011080.1 identified by match to protein family HMM PF03887; hypothetical protein 2446078 423368002659 SNSL254_A2520 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041596.1 2445539 R 423368 CDS YP_002041597.1 194444591 complement(2446116..2446571) 1 NC_011080.1 identified by match to protein family HMM PF04217; hypothetical protein 2446571 423368002660 SNSL254_A2521 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041597.1 2446116 R 423368 CDS YP_002041598.1 194442505 2446740..2446874 1 NC_011080.1 identified by glimmer; hypothetical protein 2446874 423368002661 SNSL254_A2522 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041598.1 2446740 D 423368 CDS YP_002041599.1 194443104 2446911..2448113 1 NC_011080.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2448113 ackA 423368002662 ackA Salmonella enterica subsp. enterica serovar Newport str. SL254 acetate kinase YP_002041599.1 2446911 D 423368 CDS YP_002041600.1 194443880 2448190..2450334 1 NC_011080.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2450334 pta 423368002663 pta Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphate acetyltransferase YP_002041600.1 2448190 D 423368 CDS YP_002041601.1 194444418 2450552..2452072 1 NC_011080.1 identified by match to protein family HMM PF03606; hypothetical protein 2452072 423368002664 SNSL254_A2525 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041601.1 2450552 D 423368 CDS YP_002041602.1 194445204 complement(2452121..2453074) 1 NC_011080.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase domain-containing protein 2453074 423368002665 SNSL254_A2526 Salmonella enterica subsp. enterica serovar Newport str. SL254 transketolase domain-containing protein YP_002041602.1 2452121 R 423368 CDS YP_002041603.1 194443548 complement(2453067..2453897) 1 NC_011080.1 identified by match to protein family HMM PF00456; transketolase domain-containing protein 2453897 423368002666 SNSL254_A2527 Salmonella enterica subsp. enterica serovar Newport str. SL254 transketolase domain-containing protein YP_002041603.1 2453067 R 423368 CDS YP_002041604.1 194444935 complement(2453894..2455285) 1 NC_011080.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 2455285 ulaA 423368002667 ulaA Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system ascorbate-specific transporter subunit IIC YP_002041604.1 2453894 R 423368 CDS YP_002041605.1 194446664 complement(2455306..2455578) 1 NC_011080.1 identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB 2455578 423368002668 SNSL254_A2529 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system lactose/cellobiose-specific transporter subunit IIB YP_002041605.1 2455306 R 423368 CDS YP_002041606.1 194443648 complement(2455659..2456102) 1 NC_011080.1 identified by match to protein family HMM PF00359; PTS system mannitol-specific transporter subunit IIA cryptic 2456102 423368002669 SNSL254_A2531 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system mannitol-specific transporter subunit IIA cryptic YP_002041606.1 2455659 R 423368 CDS YP_002041607.1 194445258 2456101..2456274 1 NC_011080.1 identified by glimmer; hypothetical protein 2456274 423368002670 SNSL254_A2530 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041607.1 2456101 D 423368 CDS YP_002041608.1 194446298 2456355..2457374 1 NC_011080.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI 2457374 423368002671 SNSL254_A2532 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein LacI YP_002041608.1 2456355 D 423368 CDS YP_002041609.1 194445752 complement(2457380..2457934) 1 NC_011080.1 identified by match to protein family HMM PF00293; nudix hydrolase 3 2457934 423368002672 SNSL254_A2533 Salmonella enterica subsp. enterica serovar Newport str. SL254 nudix hydrolase 3 YP_002041609.1 2457380 R 423368 CDS YP_002041610.1 194445239 complement(2457991..2458542) 1 NC_011080.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 2458542 423368002673 SNSL254_A2534 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphodiesterase YP_002041610.1 2457991 R 423368 CDS YP_002041611.1 194444711 complement(2458598..2459242) 1 NC_011080.1 identified by match to protein family HMM PF02798; glutathione S-transferase domain-containing protein 2459242 423368002674 SNSL254_A2535 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione S-transferase domain-containing protein YP_002041611.1 2458598 R 423368 CDS YP_002041612.1 194443740 2459385..2460032 1 NC_011080.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 2460032 423368002675 SNSL254_A2536 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione S-transferase YP_002041612.1 2459385 D 423368 CDS YP_002041613.1 194445578 2460158..2461051 1 NC_011080.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM PF08338; match to protein family HMM TIGR01777; hypothetical protein 2461051 423368002676 SNSL254_A2537 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041613.1 2460158 D 423368 CDS YP_002041614.1 194442610 complement(2461103..2461876) 1 NC_011080.1 identified by match to protein family HMM PF00005; histidine/lysine/arginine/ornithine transporter subunit 2461876 hisP 423368002677 hisP Salmonella enterica subsp. enterica serovar Newport str. SL254 histidine/lysine/arginine/ornithine transporter subunit YP_002041614.1 2461103 R 423368 CDS YP_002041615.1 194444404 complement(2461890..2462597) 1 NC_011080.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisM 2462597 hisM 423368002678 hisM Salmonella enterica subsp. enterica serovar Newport str. SL254 histidine ABC transporter permease HisM YP_002041615.1 2461890 R 423368 CDS YP_002041616.1 194445801 complement(2462594..2463280) 1 NC_011080.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisQ 2463280 hisQ 423368002679 hisQ Salmonella enterica subsp. enterica serovar Newport str. SL254 histidine ABC transporter permease HisQ YP_002041616.1 2462594 R 423368 CDS YP_002041617.1 194442881 complement(2463461..2464243) 1 NC_011080.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein 2464243 423368002680 SNSL254_A2541 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysine-arginine-ornithine-binding periplasmic protein YP_002041617.1 2463461 R 423368 CDS YP_002041618.1 194446318 complement(2464481..2465263) 1 NC_011080.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein 2465263 423368002681 SNSL254_A2542 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysine-arginine-ornithine-binding periplasmic protein YP_002041618.1 2464481 R 423368 CDS YP_002041619.1 194444757 2465341..2465463 1 NC_011080.1 hypothetical protein 2465463 423368002682 SNSL254_A2543 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041619.1 2465341 D 423368 CDS YP_002041620.1 194445613 complement(2465552..2466121) 1 NC_011080.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2466121 423368002683 SNSL254_A2544 Salmonella enterica subsp. enterica serovar Newport str. SL254 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002041620.1 2465552 R 423368 CDS YP_002041621.1 194443332 complement(2466148..2467554) 1 NC_011080.1 identified by match to protein family HMM PF00324; amino acid transporter 2467554 423368002684 SNSL254_A2545 Salmonella enterica subsp. enterica serovar Newport str. SL254 amino acid transporter YP_002041621.1 2466148 R 423368 CDS YP_002041622.1 194444323 complement(2467618..2468721) 1 NC_011080.1 identified by match to protein family HMM PF01168; amino acid racemase 2468721 423368002685 SNSL254_A2546 Salmonella enterica subsp. enterica serovar Newport str. SL254 amino acid racemase YP_002041622.1 2467618 R 423368 CDS YP_002041623.1 194442695 complement(2468723..2470144) 1 NC_011080.1 identified by match to protein family HMM PF00324; amino acid transporter 2470144 423368002686 SNSL254_A2547 Salmonella enterica subsp. enterica serovar Newport str. SL254 amino acid transporter YP_002041623.1 2468723 R 423368 CDS YP_002041624.1 194445823 complement(2470235..2471632) 1 NC_011080.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase 2471632 423368002687 SNSL254_A2548 Salmonella enterica subsp. enterica serovar Newport str. SL254 diaminopimelate decarboxylase YP_002041624.1 2470235 R 423368 CDS YP_002041625.1 194446403 2471843..2473270 1 NC_011080.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229; regulatory protein 2473270 423368002688 SNSL254_A2549 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein YP_002041625.1 2471843 D 423368 CDS YP_002041626.1 194444570 complement(2473306..2474823) 1 NC_011080.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2474823 purF 423368002689 purF Salmonella enterica subsp. enterica serovar Newport str. SL254 amidophosphoribosyltransferase YP_002041626.1 2473306 R 423368 CDS YP_002041627.1 194445133 complement(2474861..2475349) 1 NC_011080.1 membrane protein required for colicin V production; colicin V production protein 2475349 cvpA 423368002690 cvpA Salmonella enterica subsp. enterica serovar Newport str. SL254 colicin V production protein YP_002041627.1 2474861 R 423368 CDS YP_002041628.1 194446501 complement(2475660..2476334) 1 NC_011080.1 identified by match to protein family HMM PF05036; hypothetical protein 2476334 423368002691 SNSL254_A2552 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041628.1 2475660 R 423368 CDS YP_002041629.1 194445868 complement(2476324..2477592) 1 NC_011080.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 2477592 folC 423368002692 folC Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_002041629.1 2476324 R 423368 CDS YP_002041630.1 194442539 complement(2477660..2478574) 1 NC_011080.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2478574 accD 423368002693 accD Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyl-CoA carboxylase subunit beta YP_002041630.1 2477660 R 423368 CDS YP_002041631.1 194444175 complement(2478724..2479383) 1 NC_011080.1 identified by match to protein family HMM PF09335; hypothetical protein 2479383 423368002694 SNSL254_A2555 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041631.1 2478724 R 423368 CDS YP_002041632.1 194443793 complement(2479432..2480244) 1 NC_011080.1 'mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability'; tRNA pseudouridine synthase A 2480244 truA 423368002695 truA Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA pseudouridine synthase A YP_002041632.1 2479432 R 423368 CDS YP_002041633.1 194445515 complement(2480244..2481257) 1 NC_011080.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; semialdehyde dehydrogenase 2481257 423368002696 SNSL254_A2557 Salmonella enterica subsp. enterica serovar Newport str. SL254 semialdehyde dehydrogenase YP_002041633.1 2480244 R 423368 CDS YP_002041634.1 194444512 complement(2481325..2482461) 1 NC_011080.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; erythronate-4-phosphate dehydrogenase 2482461 pdxB 423368002697 pdxB Salmonella enterica subsp. enterica serovar Newport str. SL254 erythronate-4-phosphate dehydrogenase YP_002041634.1 2481325 R 423368 CDS YP_002041635.1 194443243 2482565..2483566 1 NC_011080.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2483566 flk 423368002698 flk Salmonella enterica subsp. enterica serovar Newport str. SL254 flagella biosynthesis regulator YP_002041635.1 2482565 D 423368 CDS YP_002041636.1 194446330 complement(2483563..2484741) 1 NC_011080.1 identified by match to protein family HMM PF07690; hypothetical protein 2484741 423368002699 SNSL254_A2561 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041636.1 2483563 R 423368 CDS YP_002041637.1 194442763 2484740..2484856 1 NC_011080.1 identified by glimmer; hypothetical protein 2484856 423368002700 SNSL254_A2560 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041637.1 2484740 D 423368 CDS YP_002041638.1 194444350 complement(2484921..2485295) 1 NC_011080.1 hypothetical protein 2485295 423368002701 SNSL254_A2562 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041638.1 2484921 R 423368 CDS YP_002041639.1 194444114 2485468..2485716 1 NC_011080.1 maltose metabolism regulator 2485716 423368002702 SNSL254_A2563 Salmonella enterica subsp. enterica serovar Newport str. SL254 maltose metabolism regulator YP_002041639.1 2485468 D 423368 CDS YP_002041640.1 194445297 2485885..2486253 1 NC_011080.1 hypothetical protein 2486253 423368002703 SNSL254_A2564 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041640.1 2485885 D 423368 CDS YP_002041641.1 194444744 2486253..2486771 1 NC_011080.1 hypothetical protein 2486771 423368002704 SNSL254_A2565 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041641.1 2486253 D 423368 CDS YP_002041642.1 194446272 complement(2486838..2487449) 1 NC_011080.1 identified by match to protein family HMM PF02517; hypothetical protein 2487449 423368002705 SNSL254_A2566 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041642.1 2486838 R 423368 CDS YP_002041643.1 194445726 complement(2487592..2488806) 1 NC_011080.1 'FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP'; 3-oxoacyl-ACP synthase 2488806 423368002706 SNSL254_A2567 Salmonella enterica subsp. enterica serovar Newport str. SL254 3-oxoacyl-ACP synthase YP_002041643.1 2487592 R 423368 CDS YP_002041644.1 194442884 2488966..2490966 1 NC_011080.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2490966 mnmC 423368002707 mnmC Salmonella enterica subsp. enterica serovar Newport str. SL254 5-methylaminomethyl-2-thiouridine methyltransferase YP_002041644.1 2488966 D 423368 CDS YP_002041645.1 194442742 complement(2491018..2491293) 1 NC_011080.1 identified by match to protein family HMM PF08891; hypothetical protein 2491293 423368002708 SNSL254_A2569 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041645.1 2491018 R 423368 CDS YP_002041646.1 194444155 complement(2491326..2491874) 1 NC_011080.1 identified by match to protein family HMM PF04315; hypothetical protein 2491874 423368002709 SNSL254_A2570 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041646.1 2491326 R 423368 CDS YP_002041647.1 194443451 complement(2491874..2492683) 1 NC_011080.1 identified by match to protein family HMM PF01925; hypothetical protein 2492683 423368002710 SNSL254_A2571 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041647.1 2491874 R 423368 CDS YP_002041648.1 194445491 complement(2492683..2493507) 1 NC_011080.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 2493507 mepA 423368002711 mepA Salmonella enterica subsp. enterica serovar Newport str. SL254 penicillin-insensitive murein endopeptidase YP_002041648.1 2492683 R 423368 CDS YP_002041649.1 194444824 complement(2493511..2494596) 1 NC_011080.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2494596 aroC 423368002712 aroC Salmonella enterica subsp. enterica serovar Newport str. SL254 chorismate synthase YP_002041649.1 2493511 R 423368 CDS YP_008083635.1 513538113 complement(2494632..2495564) 1 NC_011080.1 50S subunit L3 protein glutamine methyltransferase 2495564 prmB 423368002713 prmB Salmonella enterica subsp. enterica serovar Newport str. SL254 50S subunit L3 protein glutamine methyltransferase YP_008083635.1 2494632 R 423368 CDS YP_002041650.1 194446767 2495730..2496281 1 NC_011080.1 identified by match to protein family HMM PF01713; hypothetical protein 2496281 423368002714 SNSL254_A2575 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041650.1 2495730 D 423368 CDS YP_002041651.1 194442983 complement(2496381..2496866) 1 NC_011080.1 identified by match to protein family HMM TIGR00249; phosphohistidine phosphatase 2496866 sixA 423368002715 sixA Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphohistidine phosphatase YP_002041651.1 2496381 R 423368 CDS YP_002041652.1 194442472 complement(2497075..2499222) 1 NC_011080.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 2499222 fadJ 423368002716 fadJ Salmonella enterica subsp. enterica serovar Newport str. SL254 multifunctional fatty acid oxidation complex subunit alpha YP_002041652.1 2497075 R 423368 CDS YP_002041653.1 194443514 complement(2499222..2500532) 1 NC_011080.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2500532 fadI 423368002717 fadI Salmonella enterica subsp. enterica serovar Newport str. SL254 3-ketoacyl-CoA thiolase YP_002041653.1 2499222 R 423368 CDS YP_002041654.1 194445188 complement(2500710..2500994) 1 NC_011080.1 identified by match to protein family HMM PF04175; match to protein family HMM TIGR00743; hypothetical protein 2500994 423368002718 SNSL254_A2579 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041654.1 2500710 R 423368 CDS YP_002041655.1 194444549 2501365..2502672 1 NC_011080.1 identified by match to protein family HMM PF03349; long-chain fatty acid outer membrane transporter 2502672 423368002719 SNSL254_A2580 Salmonella enterica subsp. enterica serovar Newport str. SL254 long-chain fatty acid outer membrane transporter YP_002041655.1 2501365 D 423368 CDS YP_002041656.1 194444941 complement(2502733..2503488) 1 NC_011080.1 identified by match to protein family HMM PF04333; lipoprotein VacJ family 2503488 423368002720 SNSL254_A2581 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein VacJ family YP_002041656.1 2502733 R 423368 CDS YP_002041657.1 194442575 2503777..2504718 1 NC_011080.1 hypothetical protein 2504718 423368002721 SNSL254_A2582 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041657.1 2503777 D 423368 CDS YP_002041658.1 194442992 complement(2505025..2505963) 1 NC_011080.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease 2505963 423368002723 SNSL254_A2584 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protease YP_002041658.1 2505025 R 423368 CDS YP_002041659.1 194442346 complement(2506231..2507478) 1 NC_011080.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; phosphoglycerate transport system transcriptional regulator PgtA 2507478 423368002724 SNSL254_A2585 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglycerate transport system transcriptional regulator PgtA YP_002041659.1 2506231 R 423368 CDS YP_002041660.1 194446774 complement(2507468..2509474) 1 NC_011080.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; phosphoglycerate transport system sensor protein PgtB 2509474 423368002725 SNSL254_A2586 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglycerate transport system sensor protein PgtB YP_002041660.1 2507468 R 423368 CDS YP_002041661.1 194446129 complement(2509471..2510781) 1 NC_011080.1 phosphoglycerate transport: protein for signal transmission 2510781 423368002726 SNSL254_A2587 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglycerate transport: protein for signal transmission YP_002041661.1 2509471 R 423368 CDS YP_002041662.1 194444400 2511100..2512491 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00881; phosphoglycerate transport: transporter 2512491 423368002727 SNSL254_A2588 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglycerate transport: transporter YP_002041662.1 2511100 D 423368 CDS YP_002041663.1 194444189 complement(2512730..2512972) 1 NC_011080.1 hypothetical protein 2512972 423368002728 SNSL254_A2589 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041663.1 2512730 R 423368 CDS YP_002041664.1 194443538 complement(2513133..2513246) 1 NC_011080.1 identified by glimmer; hypothetical protein 2513246 423368002729 SNSL254_A2590 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041664.1 2513133 R 423368 CDS YP_008083636.1 513538114 2513494..2514414 1 NC_011080.1 lipid A biosynthesis lauroyl acyltransferase 2514414 423368002730 SNSL254_A2591 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipid A biosynthesis lauroyl acyltransferase YP_008083636.1 2513494 D 423368 CDS YP_002041666.1 194443089 complement(2514938..2516176) 1 NC_011080.1 identified by match to protein family HMM PF00155; aminotransferase 2516176 423368002731 SNSL254_A2593 Salmonella enterica subsp. enterica serovar Newport str. SL254 aminotransferase YP_002041666.1 2514938 R 423368 CDS YP_002041667.1 194443914 complement(2516518..2516664) 1 NC_011080.1 identified by glimmer; hypothetical protein 2516664 423368002732 SNSL254_A2594 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041667.1 2516518 R 423368 CDS YP_002041668.1 194446727 complement(2516897..2517862) 1 NC_011080.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 2517862 glk 423368002733 glk Salmonella enterica subsp. enterica serovar Newport str. SL254 glucokinase YP_002041668.1 2516897 R 423368 CDS YP_002041669.1 194442905 2518066..2519301 1 NC_011080.1 identified by match to protein family HMM PF00654; hypothetical protein 2519301 423368002734 SNSL254_A2596 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041669.1 2518066 D 423368 CDS YP_002041670.1 194445213 complement(2519321..2520973) 1 NC_011080.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase 2520973 423368002735 SNSL254_A2597 Salmonella enterica subsp. enterica serovar Newport str. SL254 indole-3-pyruvate decarboxylase YP_002041670.1 2519321 R 423368 CDS YP_002041671.1 194446125 2521153..2522151 1 NC_011080.1 identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 2522151 423368002736 SNSL254_A2598 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase, aldo/keto reductase family YP_002041671.1 2521153 D 423368 CDS YP_002041672.1 194444481 2522265..2522591 1 NC_011080.1 hypothetical protein 2522591 423368002737 SNSL254_A2599 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041672.1 2522265 D 423368 CDS YP_002041673.2 448967535 complement(2522652..2523893) 1 NC_011080.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH 2523893 423368002738 SNSL254_A2600 Salmonella enterica subsp. enterica serovar Newport str. SL254 manganese transport protein MntH YP_002041673.2 2522652 R 423368 CDS YP_002041674.1 194444379 2524236..2525438 1 NC_011080.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; nucleoside transporter NupC 2525438 nupC 423368002739 nupC Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoside transporter NupC YP_002041674.1 2524236 D 423368 CDS YP_002041675.1 194443679 complement(2525491..2527680) 1 NC_011080.1 identified by match to protein family HMM PF00563; match to protein family HMM PF05231; diguanylate cyclase 2527680 423368002740 SNSL254_A2602 Salmonella enterica subsp. enterica serovar Newport str. SL254 diguanylate cyclase YP_002041675.1 2525491 R 423368 CDS YP_002041676.1 194444311 2528301..2528648 1 NC_011080.1 identified by match to protein family HMM PF07037; hypothetical protein 2528648 423368002743 SNSL254_A2605 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041676.1 2528301 D 423368 CDS YP_002041677.1 194444675 2528650..2529042 1 NC_011080.1 identified by match to protein family HMM PF07037; hypothetical protein 2529042 423368002744 SNSL254_A2606 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041677.1 2528650 D 423368 CDS YP_002041678.1 194445320 complement(2529096..2530511) 1 NC_011080.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2530511 gltX 423368002745 gltX Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamyl-tRNA synthetase YP_002041678.1 2529096 R 423368 CDS YP_002041679.1 194446371 complement(2531431..2532315) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional activator XapR 2532315 423368002750 SNSL254_A2612 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator XapR YP_002041679.1 2531431 R 423368 CDS YP_002041680.1 194442328 complement(2532367..2532525) 1 NC_011080.1 identified by match to protein family HMM TIGR03510; hypothetical protein 2532525 423368002751 SNSL254_A2613 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041680.1 2532367 R 423368 CDS YP_002041681.1 194442824 complement(2532584..2533840) 1 NC_011080.1 identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside permease NupG 2533840 nupG 423368002752 nupG Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoside permease NupG YP_002041681.1 2532584 R 423368 CDS YP_002041682.1 194443199 complement(2533895..2534728) 1 NC_011080.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2534728 xapA 423368002753 xapA Salmonella enterica subsp. enterica serovar Newport str. SL254 purine nucleoside phosphorylase YP_002041682.1 2533895 R 423368 CDS YP_002041683.1 194444364 2534984..2535745 1 NC_011080.1 identified by match to protein family HMM PF07135; hypothetical protein 2535745 423368002754 SNSL254_A2616 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041683.1 2534984 D 423368 CDS YP_002041684.1 194445013 complement(2535807..2536733) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; OsmT protein 2536733 423368002755 SNSL254_A2617 Salmonella enterica subsp. enterica serovar Newport str. SL254 OsmT protein YP_002041684.1 2535807 R 423368 CDS YP_002041685.1 194444133 2536823..2537821 1 NC_011080.1 identified by match to protein family HMM PF01758; bile acid/Na+ symporter family protein 2537821 423368002756 SNSL254_A2618 Salmonella enterica subsp. enterica serovar Newport str. SL254 bile acid/Na+ symporter family protein YP_002041685.1 2536823 D 423368 CDS YP_002041686.1 194443477 complement(2537818..2538036) 1 NC_011080.1 hypothetical protein 2538036 423368002757 SNSL254_A2619 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041686.1 2537818 R 423368 CDS YP_002041687.1 194444893 complement(2538038..2540053) 1 NC_011080.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2540053 ligA 423368002758 ligA Salmonella enterica subsp. enterica serovar Newport str. SL254 NAD-dependent DNA ligase LigA YP_002041687.1 2538038 R 423368 CDS YP_002041688.1 194445411 complement(2540125..2541111) 1 NC_011080.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 2541111 zipA 423368002759 zipA Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein ZipA YP_002041688.1 2540125 R 423368 CDS YP_002041689.2 448967536 2541343..2542104 1 NC_011080.1 role in sulfur assimilation; sulfate transport protein CysZ 2542104 423368002760 SNSL254_A2622 Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfate transport protein CysZ YP_002041689.2 2541343 D 423368 CDS YP_002041690.1 194446700 2542268..2543239 1 NC_011080.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2543239 cysK 423368002761 cysK Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine synthase A YP_002041690.1 2542268 D 423368 CDS YP_002041691.1 194442477 complement(2543358..2543483) 1 NC_011080.1 hypothetical protein 2543483 423368002762 SNSL254_A2624 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041691.1 2543358 R 423368 CDS YP_002041692.1 194443649 2543623..2543880 1 NC_011080.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2543880 ptsH 423368002763 ptsH Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr YP_002041692.1 2543623 D 423368 CDS YP_002041693.1 194443465 2543929..2545656 1 NC_011080.1 'Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system'; phosphoenolpyruvate-protein phosphotransferase 2545656 ptsI 423368002764 ptsI Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoenolpyruvate-protein phosphotransferase YP_002041693.1 2543929 D 423368 CDS YP_002041694.1 194444099 2545697..2546206 1 NC_011080.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2546206 crr 423368002765 crr Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system glucose-specific transporter YP_002041694.1 2545697 D 423368 CDS YP_002041695.1 194444291 complement(2546356..2546595) 1 NC_011080.1 hypothetical protein 2546595 423368002766 SNSL254_A2628 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041695.1 2546356 R 423368 CDS YP_002041696.1 194443635 complement(2546592..2547458) 1 NC_011080.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 2547458 pdxK 423368002767 pdxK Salmonella enterica subsp. enterica serovar Newport str. SL254 pyridoxal kinase YP_002041696.1 2546592 R 423368 CDS YP_002041697.1 194444731 2547541..2548833 1 NC_011080.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2548833 423368002768 SNSL254_A2630 Salmonella enterica subsp. enterica serovar Newport str. SL254 GntR family transcriptional regulator YP_002041697.1 2547541 D 423368 CDS YP_002041698.1 194446432 2548848..2549567 1 NC_011080.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2549567 423368002769 SNSL254_A2631 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamine amidotransferase YP_002041698.1 2548848 D 423368 CDS YP_002041699.1 194445796 2549626..2550006 1 NC_011080.1 hypothetical protein 2550006 423368002770 SNSL254_A2632 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041699.1 2549626 D 423368 CDS YP_002041700.1 194443271 2550019..2550558 1 NC_011080.1 membrane carboxypeptidase 2550558 423368002771 SNSL254_A2633 Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane carboxypeptidase YP_002041700.1 2550019 D 423368 CDS YP_002041701.1 194442646 complement(2550689..2551600) 1 NC_011080.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2551600 cysM 423368002772 cysM Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine synthase B YP_002041701.1 2550689 R 423368 CDS YP_002041702.1 194444361 complement(2551668..2552765) 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968; sulfate/thiosulfate transporter subunit 2552765 cysA 423368002773 cysA Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfate/thiosulfate transporter subunit YP_002041702.1 2551668 R 423368 CDS YP_002041703.1 194445339 complement(2552755..2553630) 1 NC_011080.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit 2553630 cysW 423368002774 cysW Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfate/thiosulfate transporter permease subunit YP_002041703.1 2552755 R 423368 CDS YP_002041704.1 194445447 complement(2553630..2554463) 1 NC_011080.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate/thiosulfate transporter subunit 2554463 cysT 423368002775 cysT Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfate/thiosulfate transporter subunit YP_002041704.1 2553630 R 423368 CDS YP_002041705.1 194444437 complement(2554463..2555479) 1 NC_011080.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; thiosulfate transporter subunit 2555479 cysP 423368002776 cysP Salmonella enterica subsp. enterica serovar Newport str. SL254 thiosulfate transporter subunit YP_002041705.1 2554463 R 423368 CDS YP_002041706.1 194443773 complement(2555637..2556428) 1 NC_011080.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; short chain dehydrogenase 2556428 ucpA 423368002777 ucpA Salmonella enterica subsp. enterica serovar Newport str. SL254 short chain dehydrogenase YP_002041706.1 2555637 R 423368 CDS YP_002041707.1 194445437 complement(2556676..2557575) 1 NC_011080.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413; dyp-type peroxidase family protein 2557575 423368002778 SNSL254_A2640 Salmonella enterica subsp. enterica serovar Newport str. SL254 dyp-type peroxidase family protein YP_002041707.1 2556676 R 423368 CDS YP_002041708.1 194444889 complement(2557670..2558245) 1 NC_011080.1 identified by match to protein family HMM PF06572; hypothetical protein 2558245 423368002779 SNSL254_A2641 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041708.1 2557670 R 423368 CDS YP_002041709.1 194446707 complement(2558307..2558756) 1 NC_011080.1 hypothetical protein 2558756 423368002780 SNSL254_A2642 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041709.1 2558307 R 423368 CDS YP_002041710.1 194446180 complement(2558743..2559168) 1 NC_011080.1 identified by match to protein family HMM PF00583; acetyltransferase 2559168 423368002781 SNSL254_A2643 Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyltransferase YP_002041710.1 2558743 R 423368 CDS YP_002041711.1 194445656 2559381..2560250 1 NC_011080.1 identified by match to protein family HMM PF01520; match to protein family HMM TIGR01409; N-acetylmuramoyl-l-alanine amidase I 2560250 amiA 423368002782 amiA Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylmuramoyl-l-alanine amidase I YP_002041711.1 2559381 D 423368 CDS YP_002041712.1 194442975 2560253..2561152 1 NC_011080.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2561152 hemF 423368002783 hemF Salmonella enterica subsp. enterica serovar Newport str. SL254 coproporphyrinogen III oxidase YP_002041712.1 2560253 D 423368 CDS YP_002041713.1 194443647 2561179..2561850 1 NC_011080.1 identified by glimmer; hypothetical protein 2561850 423368002784 SNSL254_A2646 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041713.1 2561179 D 423368 CDS YP_002041714.1 194445351 complement(2562112..2563164) 1 NC_011080.1 activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR 2563164 423368002785 SNSL254_A2647 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator EutR YP_002041714.1 2562112 R 423368 CDS YP_002041715.1 194445714 complement(2563212..2563706) 1 NC_011080.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutK 2563706 423368002786 SNSL254_A2648 Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutK YP_002041715.1 2563212 R 423368 CDS YP_002041716.1 194445180 complement(2563719..2564378) 1 NC_011080.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutL 2564378 423368002787 SNSL254_A2649 Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutL YP_002041716.1 2563719 R 423368 CDS YP_002041717.1 194446723 complement(2564388..2565284) 1 NC_011080.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 2565284 eutC 423368002788 eutC Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine ammonia-lyase small subunit YP_002041717.1 2564388 R 423368 CDS YP_002041718.1 194443898 complement(2565303..2566664) 1 NC_011080.1 identified by match to protein family HMM PF06751; ethanolamine ammonia-lyase large subunit 2566664 eutB 423368002789 eutB Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine ammonia-lyase large subunit YP_002041718.1 2565303 R 423368 CDS YP_002041719.1 194445425 complement(2566676..2568079) 1 NC_011080.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 2568079 eutA 423368002790 eutA Salmonella enterica subsp. enterica serovar Newport str. SL254 reactivating factor for ethanolamine ammonia lyase YP_002041719.1 2566676 R 423368 CDS YP_002041720.1 194442586 complement(2568076..2569302) 1 NC_011080.1 identified by match to protein family HMM PF04346; ethanolamine utilization protein EutH 2569302 eutH 423368002791 eutH Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutH YP_002041720.1 2568076 R 423368 CDS YP_002041721.1 194444080 complement(2569422..2570609) 1 NC_011080.1 identified by match to protein family HMM PF00465; ethanolamine utilization protein EutG 2570609 423368002792 SNSL254_A2654 Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutG YP_002041721.1 2569422 R 423368 CDS YP_002041722.1 194446203 complement(2570599..2571438) 1 NC_011080.1 identified by match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ 2571438 eutJ 423368002793 eutJ Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutJ YP_002041722.1 2570599 R 423368 CDS YP_002041723.1 194443125 complement(2571449..2572852) 1 NC_011080.1 identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE 2572852 eutE 423368002794 eutE Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutE YP_002041723.1 2571449 R 423368 CDS YP_002041724.1 194446510 complement(2572864..2573151) 1 NC_011080.1 identified by match to protein family HMM PF03319; ethanolamine utilization protein 2573151 eutN 423368002795 eutN Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein YP_002041724.1 2572864 R 423368 CDS YP_008083637.1 513538115 complement(2573264..2573554) 1 NC_011080.1 ethanolamine utilization protein EutM 2573554 423368002796 SNSL254_A2658 Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutM YP_008083637.1 2573264 R 423368 CDS YP_002041725.1 194442862 complement(2573595..2574611) 1 NC_011080.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2574611 eutD 423368002797 eutD Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphotransacetylase YP_002041725.1 2573595 R 423368 CDS YP_002041726.1 194442205 complement(2574608..2575411) 1 NC_011080.1 identified by match to protein family HMM PF01923; ethanolamine utilization cobalamin adenosyltransferase 2575411 eutT 423368002798 eutT Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization cobalamin adenosyltransferase YP_002041726.1 2574608 R 423368 CDS YP_002041727.1 194446185 complement(2575408..2576097) 1 NC_011080.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249; ethanolamine utilization protein EutQ 2576097 423368002799 SNSL254_A2661 Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutQ YP_002041727.1 2575408 R 423368 CDS YP_002041728.1 194443169 complement(2576075..2576554) 1 NC_011080.1 identified by match to protein family HMM TIGR02528; ethanolamine utilization protein EutP 2576554 eutP 423368002800 eutP Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutP YP_002041728.1 2576075 R 423368 CDS YP_002041729.1 194444821 complement(2576567..2576902) 1 NC_011080.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS 2576902 423368002801 SNSL254_A2663 Salmonella enterica subsp. enterica serovar Newport str. SL254 ethanolamine utilization protein EutS YP_002041729.1 2576567 R 423368 CDS YP_002041730.1 194446504 complement(2577320..2579599) 1 NC_011080.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 2579599 423368002802 SNSL254_A2664 Salmonella enterica subsp. enterica serovar Newport str. SL254 malic enzyme YP_002041730.1 2577320 R 423368 CDS YP_002041731.1 194446758 2579604..2579801 1 NC_011080.1 hypothetical protein 2579801 423368002803 SNSL254_A2665 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041731.1 2579604 D 423368 CDS YP_002041732.1 194446241 2579871..2580821 1 NC_011080.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase A 2580821 tal1 423368002804 tal1 Salmonella enterica subsp. enterica serovar Newport str. SL254 transaldolase A YP_002041732.1 2579871 D 423368 CDS YP_002041733.1 194445465 2580841..2582841 1 NC_011080.1 'catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase'; transketolase 2582841 tkt 423368002805 tkt Salmonella enterica subsp. enterica serovar Newport str. SL254 transketolase YP_002041733.1 2580841 D 423368 CDS YP_002041734.1 194442663 complement(2582904..2583134) 1 NC_011080.1 hypothetical protein 2583134 423368002806 SNSL254_A2668 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041734.1 2582904 R 423368 CDS YP_002041735.1 194445154 complement(2583262..2584305) 1 NC_011080.1 identified by match to protein family HMM PF06674; hypothetical protein 2584305 423368002807 SNSL254_A2669 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041735.1 2583262 R 423368 CDS YP_002041736.1 194443450 complement(2584430..2585005) 1 NC_011080.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; hydrolase YffH 2585005 423368002808 SNSL254_A2670 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrolase YffH YP_002041736.1 2584430 R 423368 CDS YP_002041737.1 194445418 2585209..2586507 1 NC_011080.1 identified by match to protein family HMM PF00144; hypothetical protein 2586507 423368002809 SNSL254_A2671 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041737.1 2585209 D 423368 CDS YP_002041738.1 194443862 complement(2586956..2588917) 1 NC_011080.1 'unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic)'; oxidoreductase Fe-S binding subunit 2588917 423368002810 SNSL254_A2672 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase Fe-S binding subunit YP_002041738.1 2586956 R 423368 CDS YP_002041739.1 194446328 2589103..2590803 1 NC_011080.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarQ 2590803 423368002811 SNSL254_A2673 Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrate/nitrite sensor protein NarQ YP_002041739.1 2589103 D 423368 CDS YP_002041740.1 194445019 2590988..2594101 1 NC_011080.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; aminoglycoside/multidrug efflux system 2594101 acrD 423368002812 acrD Salmonella enterica subsp. enterica serovar Newport str. SL254 aminoglycoside/multidrug efflux system YP_002041740.1 2590988 D 423368 CDS YP_002041741.1 194446135 2594675..2595031 1 NC_011080.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 2595031 423368002813 SNSL254_A2675 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041741.1 2594675 D 423368 CDS YP_002041742.1 194446769 2595035..2596162 1 NC_011080.1 'dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.'; succinyl-diaminopimelate desuccinylase 2596162 dapE 423368002814 dapE Salmonella enterica subsp. enterica serovar Newport str. SL254 succinyl-diaminopimelate desuccinylase YP_002041742.1 2595035 D 423368 CDS YP_002041743.1 194443929 2596190..2596390 1 NC_011080.1 hypothetical protein 2596390 423368002815 SNSL254_A2677 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041743.1 2596190 D 423368 CDS YP_002041744.1 194444929 complement(2596417..2598435) 1 NC_011080.1 identified by match to protein family HMM PF00583; match to protein family HMM PF05127; acetyltransferase 2598435 423368002816 SNSL254_A2678 Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyltransferase YP_002041744.1 2596417 R 423368 CDS YP_002041745.1 194446610 complement(2598451..2599314) 1 NC_011080.1 identified by match to protein family HMM PF04228; zinc protease 2599314 423368002817 SNSL254_A2679 Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc protease YP_002041745.1 2598451 R 423368 CDS YP_002041746.1 194446216 complement(2599445..2600158) 1 NC_011080.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 2600158 purC 423368002818 purC Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_002041746.1 2599445 R 423368 CDS YP_002041747.1 194446204 complement(2600333..2601367) 1 NC_011080.1 identified by match to protein family HMM PF06804; lipoprotein 2601367 423368002819 SNSL254_A2681 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002041747.1 2600333 R 423368 CDS YP_002041748.1 194445426 complement(2601384..2602262) 1 NC_011080.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2602262 dapA 423368002820 dapA Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydrodipicolinate synthase YP_002041748.1 2601384 R 423368 CDS YP_002041749.1 194442587 2602408..2602980 1 NC_011080.1 negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2602980 gcvR 423368002821 gcvR Salmonella enterica subsp. enterica serovar Newport str. SL254 glycine cleavage system transcriptional repressor YP_002041749.1 2602408 D 423368 CDS YP_002041750.1 194446411 2602980..2603450 1 NC_011080.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2603450 bcp 423368002822 bcp Salmonella enterica subsp. enterica serovar Newport str. SL254 thioredoxin-dependent thiol peroxidase YP_002041750.1 2602980 D 423368 CDS YP_002041751.1 194442878 complement(2603497..2604636) 1 NC_011080.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 2604636 423368002823 SNSL254_A2685 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerate kinase YP_002041751.1 2603497 R 423368 CDS YP_002041752.1 194442234 complement(2604642..2605910) 1 NC_011080.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; gluconate transporter 2605910 423368002824 SNSL254_A2686 Salmonella enterica subsp. enterica serovar Newport str. SL254 gluconate transporter YP_002041752.1 2604642 R 423368 CDS YP_002041753.1 194444173 complement(2605978..2607141) 1 NC_011080.1 identified by match to protein family HMM PF05651; transcriptional regulator CdaR 2607141 423368002825 SNSL254_A2687 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator CdaR YP_002041753.1 2605978 R 423368 CDS YP_002041754.1 194446794 complement(2607441..2608508) 1 NC_011080.1 identified by match to protein family HMM PF01594; permease PerM 2608508 423368002826 SNSL254_A2688 Salmonella enterica subsp. enterica serovar Newport str. SL254 permease PerM YP_002041754.1 2607441 R 423368 CDS YP_002041755.1 194444843 2608716..2610179 1 NC_011080.1 identified by match to protein family HMM PF01435; TPR repeat-containing protein YfgC 2610179 423368002827 SNSL254_A2689 Salmonella enterica subsp. enterica serovar Newport str. SL254 TPR repeat-containing protein YfgC YP_002041755.1 2608716 D 423368 CDS YP_002041756.1 194442219 2610219..2610578 1 NC_011080.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 2610578 arsC 423368002828 arsC Salmonella enterica subsp. enterica serovar Newport str. SL254 arsenate reductase YP_002041756.1 2610219 D 423368 CDS YP_002041757.1 194446139 complement(2610605..2611330) 1 NC_011080.1 'controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP'; DNA replication initiation factor 2611330 hda 423368002829 hda Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA replication initiation factor YP_002041757.1 2610605 R 423368 CDS YP_002041758.1 194446113 complement(2611401..2612690) 1 NC_011080.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil transporter 2612690 uraA 423368002830 uraA Salmonella enterica subsp. enterica serovar Newport str. SL254 uracil transporter YP_002041758.1 2611401 R 423368 CDS YP_002041759.1 194446784 complement(2612778..2613404) 1 NC_011080.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2613404 upp 423368002831 upp Salmonella enterica subsp. enterica serovar Newport str. SL254 uracil phosphoribosyltransferase YP_002041759.1 2612778 R 423368 CDS YP_002041760.1 194444209 2613639..2613782 1 NC_011080.1 identified by glimmer; hypothetical protein 2613782 423368002832 SNSL254_A2694 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041760.1 2613639 D 423368 CDS YP_002041761.1 194442301 2613803..2614855 1 NC_011080.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2614855 purM 423368002833 purM Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoribosylaminoimidazole synthetase YP_002041761.1 2613803 D 423368 CDS YP_002041762.1 194443500 2614855..2615493 1 NC_011080.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2615493 purN 423368002834 purN Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoribosylglycinamide formyltransferase YP_002041762.1 2614855 D 423368 CDS YP_002041763.1 194444161 2615682..2617748 1 NC_011080.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2617748 ppk 423368002835 ppk Salmonella enterica subsp. enterica serovar Newport str. SL254 polyphosphate kinase YP_002041763.1 2615682 D 423368 CDS YP_002041764.1 194445546 2617714..2619294 1 NC_011080.1 identified by match to protein family HMM PF02541; exopolyphosphatase 2619294 423368002836 SNSL254_A2698 Salmonella enterica subsp. enterica serovar Newport str. SL254 exopolyphosphatase YP_002041764.1 2617714 D 423368 CDS YP_002041765.1 194443866 complement(2619330..2621543) 1 NC_011080.1 identified by match to protein family HMM PF00563; match to protein family HMM PF05231; hypothetical protein 2621543 423368002837 SNSL254_A2699 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041765.1 2619330 R 423368 CDS YP_002041766.1 194446474 2622004..2622147 1 NC_011080.1 hypothetical protein 2622147 423368002838 SNSL254_A2700 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041766.1 2622004 D 423368 CDS YP_002041767.1 194444779 2622512..2622703 1 NC_011080.1 hypothetical protein 2622703 423368002839 SNSL254_A2701 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041767.1 2622512 D 423368 CDS YP_002041768.1 194445122 complement(2623037..2623390) 1 NC_011080.1 transposase B 2623390 423368002840 SNSL254_A2702 Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase B YP_002041768.1 2623037 R 423368 CDS YP_002041769.1 194445647 complement(2623547..2625124) 1 NC_011080.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2625124 guaA 423368002841 guaA Salmonella enterica subsp. enterica serovar Newport str. SL254 GMP synthase YP_002041769.1 2623547 R 423368 CDS YP_002041770.1 194446475 complement(2625194..2626660) 1 NC_011080.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2626660 guaB 423368002842 guaB Salmonella enterica subsp. enterica serovar Newport str. SL254 inosine 5'-monophosphate dehydrogenase YP_002041770.1 2625194 R 423368 CDS YP_002041771.1 194445807 2626821..2628170 1 NC_011080.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2628170 xseA 423368002843 xseA Salmonella enterica subsp. enterica serovar Newport str. SL254 exodeoxyribonuclease VII large subunit YP_002041771.1 2626821 D 423368 CDS YP_008083638.1 513538116 complement(2628332..2633863) 1 NC_011080.1 AIDA autotransporter 2633863 423368002844 SNSL254_A2706 Salmonella enterica subsp. enterica serovar Newport str. SL254 AIDA autotransporter YP_008083638.1 2628332 R 423368 CDS YP_008083639.1 513538117 complement(2634442..2641749) 1 NC_011080.1 membrane protein 2641749 423368002845 SNSL254_A2707 Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane protein YP_008083639.1 2634442 R 423368 CDS YP_002041772.1 194442726 complement(2641915..2647494) 1 NC_011080.1 identified by match to protein family HMM PF05688; match to protein family HMM PF05689; hypothetical protein 2647494 423368002846 SNSL254_A2708 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041772.1 2641915 R 423368 CDS YP_002041773.1 194443229 complement(2647632..2648594) 1 NC_011080.1 hypothetical protein 2648594 423368002847 SNSL254_A2710 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041773.1 2647632 R 423368 CDS YP_002041774.1 194442442 2648549..2648671 1 NC_011080.1 identified by glimmer; hypothetical protein 2648671 423368002848 SNSL254_A2709 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041774.1 2648549 D 423368 CDS YP_002041775.1 194446246 complement(2648652..2650844) 1 NC_011080.1 hypothetical protein 2650844 423368002849 SNSL254_A2711 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041775.1 2648652 R 423368 CDS YP_002041776.1 194445250 complement(2651190..2651411) 1 NC_011080.1 identified by match to protein family HMM PF07191; hypothetical protein 2651411 423368002850 SNSL254_A2712 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041776.1 2651190 R 423368 CDS YP_002041777.1 194446079 complement(2651500..2652972) 1 NC_011080.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2652972 engA 423368002851 engA Salmonella enterica subsp. enterica serovar Newport str. SL254 GTP-binding protein EngA YP_002041777.1 2651500 R 423368 CDS YP_002041778.1 194444253 complement(2653091..2654269) 1 NC_011080.1 'with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis'; outer membrane protein assembly complex subunit YfgL 2654269 423368002852 SNSL254_A2714 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein assembly complex subunit YfgL YP_002041778.1 2653091 R 423368 CDS YP_002041779.1 194445044 complement(2654280..2654900) 1 NC_011080.1 hypothetical protein 2654900 423368002853 SNSL254_A2715 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041779.1 2654280 R 423368 CDS YP_002041780.1 194443808 complement(2654914..2656188) 1 NC_011080.1 'catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG'; histidyl-tRNA synthetase 2656188 hisS 423368002854 hisS Salmonella enterica subsp. enterica serovar Newport str. SL254 histidyl-tRNA synthetase YP_002041780.1 2654914 R 423368 CDS YP_002041781.1 194442309 complement(2656299..2657417) 1 NC_011080.1 'catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis'; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2657417 ispG 423368002856 ispG Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_002041781.1 2656299 R 423368 CDS YP_002041782.1 194445249 complement(2657444..2658454) 1 NC_011080.1 identified by match to protein family HMM PF01381; cytoskeletal protein RodZ 2658454 423368002857 SNSL254_A2719 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytoskeletal protein RodZ YP_002041782.1 2657444 R 423368 CDS YP_002041783.1 194444721 complement(2658746..2659912) 1 NC_011080.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2659912 423368002858 SNSL254_A2720 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosomal RNA large subunit methyltransferase N YP_002041783.1 2658746 R 423368 CDS YP_002041784.1 194443654 complement(2660119..2660550) 1 NC_011080.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2660550 ndk 423368002859 ndk Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoside diphosphate kinase YP_002041784.1 2660119 R 423368 CDS YP_002041785.1 194445567 complement(2660671..2661534) 1 NC_011080.1 identified by match to protein family HMM PF00037; polyferredoxin 2661534 423368002860 SNSL254_A2722 Salmonella enterica subsp. enterica serovar Newport str. SL254 polyferredoxin YP_002041785.1 2660671 R 423368 CDS YP_002041786.1 194442724 complement(2661534..2662343) 1 NC_011080.1 dimethylsulfoxide reductase 2662343 423368002861 SNSL254_A2723 Salmonella enterica subsp. enterica serovar Newport str. SL254 dimethylsulfoxide reductase YP_002041786.1 2661534 R 423368 CDS YP_002041787.1 194443941 complement(2662336..2662965) 1 NC_011080.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B 2662965 dmsB 423368002862 dmsB Salmonella enterica subsp. enterica serovar Newport str. SL254 dimethylsulfoxide reductase subunit B YP_002041787.1 2662336 R 423368 CDS YP_002041788.1 194445738 complement(2662962..2665340) 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 2665340 423368002863 SNSL254_A2725 Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic dimethyl sulfoxide reductase subunit A YP_002041788.1 2662962 R 423368 CDS YP_002041789.1 194442925 complement(2665496..2667811) 1 NC_011080.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 2667811 pbpC 423368002864 pbpC Salmonella enterica subsp. enterica serovar Newport str. SL254 penicillin-binding protein 1C YP_002041789.1 2665496 R 423368 CDS YP_002041790.1 194444792 complement(2667812..2672746) 1 NC_011080.1 identified by match to protein family HMM PF01835; match to protein family HMM PF07703; hypothetical protein 2672746 423368002865 SNSL254_A2727 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041790.1 2667812 R 423368 CDS YP_002041791.1 194445884 2672955..2673797 1 NC_011080.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2673797 sseA 423368002866 sseA Salmonella enterica subsp. enterica serovar Newport str. SL254 3-mercaptopyruvate sulfurtransferase YP_002041791.1 2672955 D 423368 CDS YP_002041793.1 194443403 complement(2673934..2674056) 1 NC_011080.1 identified by glimmer; hypothetical protein 2674056 423368002867 SNSL254_A2731 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041793.1 2673934 R 423368 CDS YP_002041794.1 194445987 2674044..2674712 1 NC_011080.1 hypothetical protein 2674712 423368002868 SNSL254_A2730 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041794.1 2674044 D 423368 CDS YP_002041796.1 194443935 complement(2675281..2676027) 1 NC_011080.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 2676027 sseB 423368002870 sseB Salmonella enterica subsp. enterica serovar Newport str. SL254 enhanced serine sensitivity protein SseB YP_002041796.1 2675281 R 423368 CDS YP_002041797.1 194445024 complement(2676167..2677450) 1 NC_011080.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase 2677450 423368002871 SNSL254_A2735 Salmonella enterica subsp. enterica serovar Newport str. SL254 aminopeptidase YP_002041797.1 2676167 R 423368 CDS YP_002041798.1 194442923 complement(2677697..2677897) 1 NC_011080.1 identified by match to protein family HMM PF04384; match to protein family HMM TIGR03412; hypothetical protein 2677897 iscX 423368002872 iscX Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041798.1 2677697 R 423368 CDS YP_002041799.1 194443534 complement(2677909..2678244) 1 NC_011080.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007; ferredoxin, 2Fe-2S type, ISC system 2678244 fdx 423368002873 fdx Salmonella enterica subsp. enterica serovar Newport str. SL254 ferredoxin, 2Fe-2S type, ISC system YP_002041799.1 2677909 R 423368 CDS YP_002041800.1 194442425 complement(2678246..2680096) 1 NC_011080.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2680096 hscA 423368002874 hscA Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone protein HscA YP_002041800.1 2678246 R 423368 CDS YP_002041801.1 194443026 complement(2680109..2680624) 1 NC_011080.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2680624 hscB 423368002875 hscB Salmonella enterica subsp. enterica serovar Newport str. SL254 co-chaperone HscB YP_002041801.1 2680109 R 423368 CDS YP_002041802.1 194445485 complement(2680820..2681143) 1 NC_011080.1 forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein 2681143 iscA 423368002876 iscA Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-sulfur cluster assembly protein YP_002041802.1 2680820 R 423368 CDS YP_002041803.1 194443641 complement(2681172..2681558) 1 NC_011080.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein 2681558 iscU 423368002877 iscU Salmonella enterica subsp. enterica serovar Newport str. SL254 scaffold protein YP_002041803.1 2681172 R 423368 CDS YP_002041804.1 194446260 complement(2681586..2682800) 1 NC_011080.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2682800 iscS 423368002878 iscS Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine desulfurase YP_002041804.1 2681586 R 423368 CDS YP_002041806.1 194444495 complement(2682981..2683475) 1 NC_011080.1 regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR 2683475 iscR 423368002879 iscR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator IscR YP_002041806.1 2682981 R 423368 CDS YP_002041807.1 194442269 complement(2683635..2684366) 1 NC_011080.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase 2684366 423368002880 SNSL254_A2745 Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA methyltransferase YP_002041807.1 2683635 R 423368 CDS YP_002041808.1 194445103 2684485..2685288 1 NC_011080.1 identified by match to protein family HMM PF00459; inositol monophosphatase 2685288 suhB 423368002881 suhB Salmonella enterica subsp. enterica serovar Newport str. SL254 inositol monophosphatase YP_002041808.1 2684485 D 423368 CDS YP_002041809.1 194443844 2685433..2686311 1 NC_011080.1 hypothetical protein 2686311 423368002882 SNSL254_A2747 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041809.1 2685433 D 423368 CDS YP_002041810.1 194444585 2686493..2687536 1 NC_011080.1 identified by match to protein family HMM TIGR02910; sulfite reductase subunit A 2687536 asrA 423368002883 asrA Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfite reductase subunit A YP_002041810.1 2686493 D 423368 CDS YP_002041811.1 194445110 2687540..2688358 1 NC_011080.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2688358 asrB 423368002884 asrB Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic sulfite reductase subunit B YP_002041811.1 2687540 D 423368 CDS YP_002041812.1 194444809 2688369..2689382 1 NC_011080.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; sulfite reductase subunit C 2689382 asrC 423368002885 asrC Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfite reductase subunit C YP_002041812.1 2688369 D 423368 CDS YP_002041813.1 194444312 complement(2689383..2690369) 1 NC_011080.1 identified by match to protein family HMM PF03824; high-affinity nickel-transporter 2690369 423368002886 SNSL254_A2751 Salmonella enterica subsp. enterica serovar Newport str. SL254 high-affinity nickel-transporter YP_002041813.1 2689383 R 423368 CDS YP_002041814.1 194443804 complement(2690360..2691028) 1 NC_011080.1 identified by match to protein family HMM PF06226; hypothetical protein 2691028 423368002887 SNSL254_A2752 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041814.1 2690360 R 423368 CDS YP_002041815.1 194446269 2691124..2692401 1 NC_011080.1 identified by match to protein family HMM PF00874; stationary phase inducible protein CsiE 2692401 423368002888 SNSL254_A2753 Salmonella enterica subsp. enterica serovar Newport str. SL254 stationary phase inducible protein CsiE YP_002041815.1 2691124 D 423368 CDS YP_002041816.1 194443278 complement(2692396..2693535) 1 NC_011080.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter 2693535 423368002889 SNSL254_A2754 Salmonella enterica subsp. enterica serovar Newport str. SL254 3-phenylpropionic acid transporter YP_002041816.1 2692396 R 423368 CDS YP_002041817.1 194445772 complement(2693731..2694984) 1 NC_011080.1 'catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate'; serine hydroxymethyltransferase 2694984 glyA 423368002890 glyA Salmonella enterica subsp. enterica serovar Newport str. SL254 serine hydroxymethyltransferase YP_002041817.1 2693731 R 423368 CDS YP_002041818.1 194446012 complement(2695122..2695268) 1 NC_011080.1 hypothetical protein 2695268 423368002891 SNSL254_A2756 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041818.1 2695122 R 423368 CDS YP_002041819.1 194444725 2695309..2696499 1 NC_011080.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2696499 hmp 423368002892 hmp Salmonella enterica subsp. enterica serovar Newport str. SL254 nitric oxide dioxygenase YP_002041819.1 2695309 D 423368 CDS YP_002041820.1 194444192 2696681..2698225 1 NC_011080.1 regulates the cadBA operon; DNA-binding transcriptional activator CadC 2698225 423368002893 SNSL254_A2758 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator CadC YP_002041820.1 2696681 D 423368 CDS YP_002041821.1 194443544 2698586..2699917 1 NC_011080.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2699917 cadB 423368002894 cadB Salmonella enterica subsp. enterica serovar Newport str. SL254 lysine/cadaverine antiporter YP_002041821.1 2698586 D 423368 CDS YP_002041822.1 194444933 2700000..2702144 1 NC_011080.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 2702144 423368002895 SNSL254_A2760 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysine decarboxylase, constitutive YP_002041822.1 2700000 D 423368 CDS YP_002041823.1 194446808 2702200..2703660 1 NC_011080.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH 2703660 423368002896 SNSL254_A2761 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transporter YbgH YP_002041823.1 2702200 D 423368 CDS YP_002041824.1 194442820 complement(2703709..2704047) 1 NC_011080.1 'indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA'; nitrogen regulatory protein P-II 1 2704047 423368002897 SNSL254_A2762 Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrogen regulatory protein P-II 1 YP_002041824.1 2703709 R 423368 CDS YP_002041825.1 194442320 complement(2704124..2705461) 1 NC_011080.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728; transcriptional regulator ZraR 2705461 423368002898 SNSL254_A2763 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator ZraR YP_002041825.1 2704124 R 423368 CDS YP_002041826.2 448967537 complement(2705458..2706222) 1 NC_011080.1 hypothetical protein 2706222 423368002899 SNSL254_A2764 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041826.2 2705458 R 423368 CDS YP_008083640.1 513538118 complement(2706224..2707666) 1 NC_011080.1 sensor kinase 2707666 423368002900 SNSL254_A2765 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor kinase YP_008083640.1 2706224 R 423368 CDS YP_002041828.1 194445477 complement(2708304..2712191) 1 NC_011080.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2712191 purL 423368002902 purL Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoribosylformylglycinamidine synthase YP_002041828.1 2708304 R 423368 CDS YP_002041830.1 194446086 2712447..2713991 1 NC_011080.1 'YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function'; transglycosylase 2713991 423368002903 SNSL254_A2770 Salmonella enterica subsp. enterica serovar Newport str. SL254 transglycosylase YP_002041830.1 2712447 D 423368 CDS YP_002041831.1 194445660 complement(2714042..2714560) 1 NC_011080.1 identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase 2714560 423368002904 SNSL254_A2771 Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA-specific adenosine deaminase YP_002041831.1 2714042 R 423368 CDS YP_002041832.1 194446324 complement(2714618..2715253) 1 NC_011080.1 identified by match to protein family HMM TIGR01545; hypothetical protein 2715253 yfhB 423368002905 yfhB Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041832.1 2714618 R 423368 CDS YP_002041833.1 194444653 complement(2715257..2716618) 1 NC_011080.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system transporter subunit IIC 2716618 423368002906 SNSL254_A2773 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system transporter subunit IIC YP_002041833.1 2715257 R 423368 CDS YP_002041834.1 194445313 complement(2716629..2717522) 1 NC_011080.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 2717522 murQ 423368002907 murQ Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylmuramic acid 6-phosphate etherase YP_002041834.1 2716629 R 423368 CDS YP_002041835.1 194444928 2717638..2718486 1 NC_011080.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; DNA-binding transcriptional regulator 2718486 423368002908 SNSL254_A2775 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator YP_002041835.1 2717638 D 423368 CDS YP_002041836.1 194445620 complement(2718525..2719442) 1 NC_011080.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 2719442 panE 423368002909 panE Salmonella enterica subsp. enterica serovar Newport str. SL254 2-dehydropantoate 2-reductase YP_002041836.1 2718525 R 423368 CDS YP_002041837.1 194445997 complement(2719464..2720660) 1 NC_011080.1 identified by match to protein family HMM PF07690; major facilitator family transporter protein 2720660 423368002910 SNSL254_A2777 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator family transporter protein YP_002041837.1 2719464 R 423368 CDS YP_002041838.1 194446647 2720776..2721702 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2721702 423368002911 SNSL254_A2778 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002041838.1 2720776 D 423368 CDS YP_002041839.1 194442421 2721740..2722000 1 NC_011080.1 identified by match to protein family HMM PF00037; ferredoxin 2722000 423368002912 SNSL254_A2779 Salmonella enterica subsp. enterica serovar Newport str. SL254 ferredoxin YP_002041839.1 2721740 D 423368 CDS YP_002041840.1 194442775 complement(2722112..2722492) 1 NC_011080.1 'Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids'; 4'-phosphopantetheinyl transferase 2722492 acpS 423368002913 acpS Salmonella enterica subsp. enterica serovar Newport str. SL254 4'-phosphopantetheinyl transferase YP_002041840.1 2722112 R 423368 CDS YP_002041841.1 194445975 complement(2722492..2723223) 1 NC_011080.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2723223 pdxJ 423368002914 pdxJ Salmonella enterica subsp. enterica serovar Newport str. SL254 pyridoxine 5'-phosphate synthase YP_002041841.1 2722492 R 423368 CDS YP_002041842.1 194446629 complement(2723235..2723963) 1 NC_011080.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2723963 recO 423368002915 recO Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA repair protein RecO YP_002041842.1 2723235 R 423368 CDS YP_002041843.1 194442527 complement(2723975..2724880) 1 NC_011080.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2724880 era 423368002916 era Salmonella enterica subsp. enterica serovar Newport str. SL254 GTP-binding protein Era YP_002041843.1 2723975 R 423368 CDS YP_002041844.1 194443007 complement(2724877..2725614) 1 NC_011080.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2725614 rnc 423368002917 rnc Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease III YP_002041844.1 2724877 R 423368 CDS YP_002041845.1 194443815 complement(2725831..2726805) 1 NC_011080.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 2726805 lepB 423368002918 lepB Salmonella enterica subsp. enterica serovar Newport str. SL254 signal peptidase I YP_002041845.1 2725831 R 423368 CDS YP_002041846.1 194444426 complement(2726822..2728621) 1 NC_011080.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2728621 lepA 423368002919 lepA Salmonella enterica subsp. enterica serovar Newport str. SL254 GTP-binding protein LepA YP_002041846.1 2726822 R 423368 CDS YP_002041847.1 194445136 2729050..2730519 1 NC_011080.1 leucine-rich repeat protein 2730519 423368002920 SNSL254_A2788 Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine-rich repeat protein YP_002041847.1 2729050 D 423368 CDS YP_002041848.1 194445797 complement(2730723..2730854) 1 NC_011080.1 identified by glimmer; hypothetical protein 2730854 423368002921 SNSL254_A2789 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041848.1 2730723 R 423368 CDS YP_002041849.1 194442381 complement(2731854..2731973) 1 NC_011080.1 integrase, catalytic region 2731973 423368002922 SNSL254_A2791 Salmonella enterica subsp. enterica serovar Newport str. SL254 integrase, catalytic region YP_002041849.1 2731854 R 423368 CDS YP_002041850.1 194446685 complement(2733369..2733947) 1 NC_011080.1 identified by match to protein family HMM PF02413; phage tail assembly protein 2733947 423368002923 SNSL254_A2792 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail assembly protein YP_002041850.1 2733369 R 423368 CDS YP_002041851.1 194444116 complement(2733937..2734761) 1 NC_011080.1 identified by match to protein family HMM PF01661; appr-1-p processing enzyme family protein 2734761 423368002924 SNSL254_A2793 Salmonella enterica subsp. enterica serovar Newport str. SL254 appr-1-p processing enzyme family protein YP_002041851.1 2733937 R 423368 CDS YP_002041852.1 194443605 complement(2734758..2737130) 1 NC_011080.1 identified by match to protein family HMM PF03406; match to protein family HMM PF07484; match to protein family HMM PF08400; side tail fiber protein 2737130 423368002925 SNSL254_A2794 Salmonella enterica subsp. enterica serovar Newport str. SL254 side tail fiber protein YP_002041852.1 2734758 R 423368 CDS YP_002041853.1 194443991 complement(2737184..2737426) 1 NC_011080.1 hypothetical protein 2737426 423368002926 SNSL254_A2795 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041853.1 2737184 R 423368 CDS YP_002041854.1 194443329 complement(2737465..2740827) 1 NC_011080.1 identified by match to protein family HMM PF00041; match to protein family HMM PF09327; host specificity protein 2740827 423368002927 SNSL254_A2796 Salmonella enterica subsp. enterica serovar Newport str. SL254 host specificity protein YP_002041854.1 2737465 R 423368 CDS YP_002041855.2 448967538 complement(2740889..2741497) 1 NC_011080.1 identified by match to protein family HMM PF06805; bacteriophage lambda tail assembly protein I 2741497 423368002928 SNSL254_A2797 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage lambda tail assembly protein I YP_002041855.2 2740889 R 423368 CDS YP_002041856.1 194446635 complement(2742178..2742876) 1 NC_011080.1 identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600; phage minor tail protein L 2742876 423368002930 SNSL254_A2799 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage minor tail protein L YP_002041856.1 2742178 R 423368 CDS YP_002041857.1 194446435 complement(2742886..2743215) 1 NC_011080.1 identified by match to protein family HMM PF05939; phage minor tail protein 2743215 423368002931 SNSL254_A2800 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage minor tail protein YP_002041857.1 2742886 R 423368 CDS YP_002041858.1 194443589 complement(2743218..2746313) 1 NC_011080.1 identified by match to protein family HMM PF06791; match to protein family HMM PF09718; match to protein family HMM TIGR01541; gifsy-1 prophage VmtH 2746313 423368002932 SNSL254_A2801 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-1 prophage VmtH YP_002041858.1 2743218 R 423368 CDS YP_002041859.1 194446299 complement(2746285..2746557) 1 NC_011080.1 identified by match to protein family HMM PF06223; match to protein family HMM TIGR01715; phage tail assembly protein T 2746557 423368002933 SNSL254_A2802 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail assembly protein T YP_002041859.1 2746285 R 423368 CDS YP_002041860.1 194442498 complement(2746620..2747015) 1 NC_011080.1 identified by match to protein family HMM PF06894; match to protein family HMM TIGR01674; phage minor tail protein G 2747015 423368002934 SNSL254_A2803 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage minor tail protein G YP_002041860.1 2746620 R 423368 CDS YP_002041861.1 194443259 complement(2747066..2747809) 1 NC_011080.1 identified by match to protein family HMM PF02368; gifsy-1 prophage VmtV 2747809 423368002935 SNSL254_A2804 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-1 prophage VmtV YP_002041861.1 2747066 R 423368 CDS YP_002041862.1 194442268 complement(2747820..2748221) 1 NC_011080.1 identified by match to protein family HMM PF06141; phage minor tail protein U 2748221 423368002936 SNSL254_A2806 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage minor tail protein U YP_002041862.1 2747820 R 423368 CDS YP_002041863.1 194442869 2748210..2749460 1 NC_011080.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; peyer'S patch-specific virulence factor GipA 2749460 423368002937 SNSL254_A2805 Salmonella enterica subsp. enterica serovar Newport str. SL254 peyer'S patch-specific virulence factor GipA YP_002041863.1 2748210 D 423368 CDS YP_002041864.1 194443511 complement(2749509..2750087) 1 NC_011080.1 identified by match to protein family HMM PF06763; prophage minor tail protein Z 2750087 423368002938 SNSL254_A2807 Salmonella enterica subsp. enterica serovar Newport str. SL254 prophage minor tail protein Z YP_002041864.1 2749509 R 423368 CDS YP_002041865.1 194443993 complement(2750115..2750498) 1 NC_011080.1 identified by match to protein family HMM PF05354; phage Head-Tail Attachment 2750498 423368002939 SNSL254_A2808 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage Head-Tail Attachment YP_002041865.1 2750115 R 423368 CDS YP_002041866.1 194446582 complement(2750509..2750868) 1 NC_011080.1 gifsy-1 prophage DNA packaging protein gp9 2750868 423368002940 SNSL254_A2809 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-1 prophage DNA packaging protein gp9 YP_002041866.1 2750509 R 423368 CDS YP_002041867.1 194445026 complement(2750926..2751954) 1 NC_011080.1 identified by match to protein family HMM PF03864; phage major capsid protein E 2751954 423368002941 SNSL254_A2810 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage major capsid protein E YP_002041867.1 2750926 R 423368 CDS YP_002041868.1 194442981 complement(2752009..2752356) 1 NC_011080.1 identified by match to protein family HMM PF02924; bacteriophage lambda head decoration protein D 2752356 423368002942 SNSL254_A2811 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage lambda head decoration protein D YP_002041868.1 2752009 R 423368 CDS YP_002041869.1 194445600 complement(2752369..2753865) 1 NC_011080.1 identified by match to protein family HMM PF01343; gifsy-1 prophage head-tail preconnector gp5 2753865 423368002943 SNSL254_A2812 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-1 prophage head-tail preconnector gp5 YP_002041869.1 2752369 R 423368 CDS YP_002041870.1 194444930 complement(2753855..2755435) 1 NC_011080.1 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; phage portal protein lambda family 2755435 423368002944 SNSL254_A2813 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage portal protein lambda family YP_002041870.1 2753855 R 423368 CDS YP_002041871.1 194444697 complement(2755432..2755635) 1 NC_011080.1 identified by match to protein family HMM PF02831; gpW 2755635 423368002945 SNSL254_A2814 Salmonella enterica subsp. enterica serovar Newport str. SL254 gpW YP_002041871.1 2755432 R 423368 CDS YP_002041872.1 194445357 complement(2755619..2757550) 1 NC_011080.1 identified by match to protein family HMM PF05876; phage terminase large subunit 2757550 423368002946 SNSL254_A2815 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage terminase large subunit YP_002041872.1 2755619 R 423368 CDS YP_002041873.1 194443700 complement(2757522..2758067) 1 NC_011080.1 identified by match to protein family HMM PF07471; Gifsy-1 prophage DNA packaging protein 2758067 423368002947 SNSL254_A2816 Salmonella enterica subsp. enterica serovar Newport str. SL254 Gifsy-1 prophage DNA packaging protein YP_002041873.1 2757522 R 423368 CDS YP_002041874.1 194444378 2758354..2758755 1 NC_011080.1 identified by match to protein family HMM PF04151; pre-peptidase domain-containing protein 2758755 423368002948 SNSL254_A2817 Salmonella enterica subsp. enterica serovar Newport str. SL254 pre-peptidase domain-containing protein YP_002041874.1 2758354 D 423368 CDS YP_002041875.1 194442746 complement(2758991..2759443) 1 NC_011080.1 identified by match to protein family HMM PF03245; bacteriophage lysis protein 2759443 423368002949 SNSL254_A2818 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage lysis protein YP_002041875.1 2758991 R 423368 CDS YP_002041876.1 194443240 complement(2759461..2759910) 1 NC_011080.1 identified by match to protein family HMM PF00959; phage lysozyme 2759910 423368002950 SNSL254_A2819 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage lysozyme YP_002041876.1 2759461 R 423368 CDS YP_002041877.1 194446353 complement(2759897..2760232) 1 NC_011080.1 identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family 2760232 423368002951 SNSL254_A2820 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage holin, lambda family YP_002041877.1 2759897 R 423368 CDS YP_002041878.1 194444553 2760502..2761188 1 NC_011080.1 identified by match to protein family HMM PF07108; hypothetical protein 2761188 423368002952 SNSL254_A2821 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041878.1 2760502 D 423368 CDS YP_002041879.1 194442595 complement(2761403..2761591) 1 NC_011080.1 identified by glimmer; hypothetical protein 2761591 423368002953 SNSL254_A2822 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041879.1 2761403 R 423368 CDS YP_002041880.1 194444386 complement(2762098..2762661) 1 NC_011080.1 hypothetical protein 2762661 423368002955 SNSL254_A2824 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041880.1 2762098 R 423368 CDS YP_002041881.1 194443892 complement(2762658..2762783) 1 NC_011080.1 identified by glimmer; hypothetical protein 2762783 423368002956 SNSL254_A2825 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041881.1 2762658 R 423368 CDS YP_002041882.1 194442989 complement(2762934..2763611) 1 NC_011080.1 identified by match to protein family HMM PF06323; gifsy-1 prophage RegQ 2763611 423368002957 SNSL254_A2826 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-1 prophage RegQ YP_002041882.1 2762934 R 423368 CDS YP_002041883.1 194442342 complement(2763745..2764356) 1 NC_011080.1 identified by match to protein family HMM PF05766; bacteriophage Lambda NinG protein 2764356 423368002958 SNSL254_A2827 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage Lambda NinG protein YP_002041883.1 2763745 R 423368 CDS YP_002041884.1 194443987 complement(2764359..2764565) 1 NC_011080.1 hypothetical protein 2764565 423368002959 SNSL254_A2828 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041884.1 2764359 R 423368 CDS YP_002041885.1 194443886 complement(2764565..2765167) 1 NC_011080.1 identified by match to protein family HMM PF07105; gifsy-2 prophage protein 2765167 423368002960 SNSL254_A2829 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-2 prophage protein YP_002041885.1 2764565 R 423368 CDS YP_002041886.1 194445527 complement(2765202..2765318) 1 NC_011080.1 bacteriophage protein 2765318 423368002961 SNSL254_A2830 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage protein YP_002041886.1 2765202 R 423368 CDS YP_002041887.1 194446434 complement(2765567..2765800) 1 NC_011080.1 identified by match to protein family HMM PF06183; hypothetical protein 2765800 423368002962 SNSL254_A2831 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041887.1 2765567 R 423368 CDS YP_002041888.1 194445933 complement(2766783..2767481) 1 NC_011080.1 identified by match to protein family HMM PF04447; hypothetical protein 2767481 423368002963 SNSL254_A2832 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041888.1 2766783 R 423368 CDS YP_002041889.1 194443463 complement(2767495..2768190) 1 NC_011080.1 identified by match to protein family HMM PF06992; replication P family protein 2768190 423368002964 SNSL254_A2833 Salmonella enterica subsp. enterica serovar Newport str. SL254 replication P family protein YP_002041889.1 2767495 R 423368 CDS YP_002041890.1 194442986 complement(2768187..2769071) 1 NC_011080.1 identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; replication protein O 2769071 423368002965 SNSL254_A2834 Salmonella enterica subsp. enterica serovar Newport str. SL254 replication protein O YP_002041890.1 2768187 R 423368 CDS YP_002041891.2 448967539 complement(2769163..2769483) 1 NC_011080.1 Gifsy-1 prophage cI 2769483 423368002966 SNSL254_A2835 Salmonella enterica subsp. enterica serovar Newport str. SL254 Gifsy-1 prophage cI YP_002041891.2 2769163 R 423368 CDS YP_002041892.1 194446789 2770293..2771132 1 NC_011080.1 identified by match to protein family HMM PF01656; chromosome partitioning ATPase 2771132 423368002967 SNSL254_A2836 Salmonella enterica subsp. enterica serovar Newport str. SL254 chromosome partitioning ATPase YP_002041892.1 2770293 D 423368 CDS YP_002041893.2 448967540 2771125..2771511 1 NC_011080.1 identified by glimmer; hypothetical protein 2771511 423368002968 SNSL254_A2837 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041893.2 2771125 D 423368 CDS YP_002041894.2 448967541 2771511..2772173 1 NC_011080.1 identified by glimmer; hypothetical protein 2772173 423368002969 SNSL254_A2838 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041894.2 2771511 D 423368 CDS YP_002041895.1 194444732 2772521..2772637 1 NC_011080.1 hypothetical protein 2772637 423368002970 SNSL254_A2839 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041895.1 2772521 D 423368 CDS YP_002041896.1 194444104 2772630..2772788 1 NC_011080.1 hypothetical protein 2772788 423368002971 SNSL254_A2840 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041896.1 2772630 D 423368 CDS YP_002041897.1 194443453 2772873..2773160 1 NC_011080.1 hypothetical protein 2773160 423368002972 SNSL254_A2841 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041897.1 2772873 D 423368 CDS YP_002041898.1 194442704 2773287..2776214 1 NC_011080.1 identified by match to protein family HMM PF06630; gifsy-1 prophage RecE 2776214 423368002973 SNSL254_A2842 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-1 prophage RecE YP_002041898.1 2773287 D 423368 CDS YP_002041899.1 194443699 2776225..2777334 1 NC_011080.1 identified by match to protein family HMM PF03837; gifsy-1 prophage protein 2777334 423368002974 SNSL254_A2843 Salmonella enterica subsp. enterica serovar Newport str. SL254 gifsy-1 prophage protein YP_002041899.1 2776225 D 423368 CDS YP_002041900.1 194444245 2777377..2777616 1 NC_011080.1 hypothetical protein 2777616 423368002975 SNSL254_A2844 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041900.1 2777377 D 423368 CDS YP_002041901.1 194442657 complement(2777919..2779148) 1 NC_011080.1 identified by match to protein family HMM PF00589; phage integrase family protein 2779148 423368002976 SNSL254_A2845 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage integrase family protein YP_002041901.1 2777919 R 423368 CDS YP_002041902.1 194443286 2779366..2779503 1 NC_011080.1 identified by glimmer; hypothetical protein 2779503 423368002977 SNSL254_A2846 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041902.1 2779366 D 423368 CDS YP_002041903.1 194445666 complement(2779646..2780125) 1 NC_011080.1 involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 2780125 423368002978 SNSL254_A2847 Salmonella enterica subsp. enterica serovar Newport str. SL254 SoxR reducing system protein RseC YP_002041903.1 2779646 R 423368 CDS YP_002041904.1 194446453 complement(2780122..2781078) 1 NC_011080.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 2781078 rseB 423368002979 rseB Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic negative regulator of sigmaE YP_002041904.1 2780122 R 423368 CDS YP_002041905.1 194444746 complement(2781078..2781728) 1 NC_011080.1 identified by match to protein family HMM PF03872; match to protein family HMM PF03873; anti-RNA polymerase sigma factor SigE 2781728 rseA 423368002980 rseA Salmonella enterica subsp. enterica serovar Newport str. SL254 anti-RNA polymerase sigma factor SigE YP_002041905.1 2781078 R 423368 CDS YP_002041906.1 194443640 complement(2781760..2782335) 1 NC_011080.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2782335 rpoE 423368002981 rpoE Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA polymerase sigma factor RpoE YP_002041906.1 2781760 R 423368 CDS YP_002041907.1 194444309 complement(2782496..2782675) 1 NC_011080.1 identified by glimmer; hypothetical protein 2782675 423368002982 SNSL254_A2851 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041907.1 2782496 R 423368 CDS YP_002041908.1 194445710 2782760..2784382 1 NC_011080.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2784382 nadB 423368002983 nadB Salmonella enterica subsp. enterica serovar Newport str. SL254 L-aspartate oxidase YP_002041908.1 2782760 D 423368 CDS YP_007419097.1 448967542 complement(2784367..2785104) 1 NC_011080.1 methyltransferase 2785104 423368002984 SNSL254_A2853 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyltransferase YP_007419097.1 2784367 R 423368 CDS YP_002041910.1 194444674 2785234..2786568 1 NC_011080.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2786568 423368002985 SNSL254_A2855 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent RNA helicase SrmB YP_002041910.1 2785234 D 423368 CDS YP_002041911.1 194445637 complement(2786586..2787485) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 2787485 423368002986 SNSL254_A2856 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR substrate binding domain-containing protein YP_002041911.1 2786586 R 423368 CDS YP_002041912.1 194443716 2787588..2788175 1 NC_011080.1 identified by match to protein family HMM PF01810; neutral amino-acid efflux protein 2788175 423368002987 SNSL254_A2857 Salmonella enterica subsp. enterica serovar Newport str. SL254 neutral amino-acid efflux protein YP_002041912.1 2787588 D 423368 CDS YP_002041913.1 194444058 complement(2788237..2788620) 1 NC_011080.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 2788620 grcA 423368002988 grcA Salmonella enterica subsp. enterica serovar Newport str. SL254 autonomous glycyl radical cofactor GrcA YP_002041913.1 2788237 R 423368 CDS YP_002041914.1 194442686 2788939..2789628 1 NC_011080.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2789628 ung 423368002989 ung Salmonella enterica subsp. enterica serovar Newport str. SL254 uracil-DNA glycosylase YP_002041914.1 2788939 D 423368 CDS YP_002041915.1 194445716 complement(2789744..2790781) 1 NC_011080.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; methyltransferase 2790781 423368002990 SNSL254_A2860 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyltransferase YP_002041915.1 2789744 R 423368 CDS YP_002041916.1 194446345 2790985..2791404 1 NC_011080.1 identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068; thioredoxin 2 2791404 423368002991 SNSL254_A2861 Salmonella enterica subsp. enterica serovar Newport str. SL254 thioredoxin 2 YP_002041916.1 2790985 D 423368 CDS YP_002041917.1 194444694 2791477..2792157 1 NC_011080.1 identified by match to protein family HMM PF03942; DTW domain-containing protein 2792157 423368002992 SNSL254_A2862 Salmonella enterica subsp. enterica serovar Newport str. SL254 DTW domain-containing protein YP_002041917.1 2791477 D 423368 CDS YP_002041918.1 194442623 2792211..2794871 1 NC_011080.1 identified by match to protein family HMM PF00583; match to protein family HMM PF02629; CoA binding domain/acetyltransferase domain-containing protein 2794871 423368002993 SNSL254_A2863 Salmonella enterica subsp. enterica serovar Newport str. SL254 CoA binding domain/acetyltransferase domain-containing protein YP_002041918.1 2792211 D 423368 CDS YP_002041919.1 194442912 2794986..2796341 1 NC_011080.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2796341 pssA 423368002994 pssA Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphatidylserine synthase YP_002041919.1 2794986 D 423368 CDS YP_002041920.1 194446508 2796386..2796709 1 NC_011080.1 hypothetical protein 2796709 423368002995 SNSL254_A2865 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041920.1 2796386 D 423368 CDS YP_002041921.1 194446137 complement(2796706..2798007) 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; alpha-ketoglutarate transporter 2798007 423368002996 SNSL254_A2866 Salmonella enterica subsp. enterica serovar Newport str. SL254 alpha-ketoglutarate transporter YP_002041921.1 2796706 R 423368 CDS YP_002041922.1 194444548 complement(2798111..2798566) 1 NC_011080.1 hypothetical protein 2798566 423368002997 SNSL254_A2867 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041922.1 2798111 R 423368 CDS YP_002041923.1 194443617 2798814..2798945 1 NC_011080.1 identified by glimmer; hypothetical protein 2798945 423368002998 SNSL254_A2868 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041923.1 2798814 D 423368 CDS YP_002041924.1 194443281 complement(2804641..2807214) 1 NC_011080.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; protein disaggregation chaperone 2807214 clpB 423368003003 clpB Salmonella enterica subsp. enterica serovar Newport str. SL254 protein disaggregation chaperone YP_002041924.1 2804641 R 423368 CDS YP_002041925.1 194445719 complement(2807344..2808075) 1 NC_011080.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 2808075 423368003004 SNSL254_A2876 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041925.1 2807344 R 423368 CDS YP_002041926.1 194446496 complement(2808072..2809052) 1 NC_011080.1 'responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA'; 23S rRNA pseudouridine synthase D 2809052 rluD 423368003005 rluD Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA pseudouridine synthase D YP_002041926.1 2808072 R 423368 CDS YP_002041927.1 194444235 2809184..2809921 1 NC_011080.1 'with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline'; outer membrane protein assembly complex subunit YfiO 2809921 423368003006 SNSL254_A2878 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein assembly complex subunit YfiO YP_002041927.1 2809184 D 423368 CDS YP_002041928.1 194442606 2810193..2810531 1 NC_011080.1 associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2810531 423368003007 SNSL254_A2879 Salmonella enterica subsp. enterica serovar Newport str. SL254 translation inhibitor protein RaiA YP_002041928.1 2810193 D 423368 CDS YP_002041929.1 194445170 2810782..2811942 1 NC_011080.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2811942 pheA 423368003008 pheA Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional chorismate mutase/prephenate dehydratase YP_002041929.1 2810782 D 423368 CDS YP_002041930.1 194444531 complement(2811903..2812811) 1 NC_011080.1 identified by match to protein family HMM PF08450; SMP-30/gluconolaconase/LRE domain-containing protein 2812811 423368003009 SNSL254_A2881 Salmonella enterica subsp. enterica serovar Newport str. SL254 SMP-30/gluconolaconase/LRE domain-containing protein YP_002041930.1 2811903 R 423368 CDS YP_002041931.1 194445880 complement(2812869..2813990) 1 NC_011080.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 2813990 tyrA 423368003010 tyrA Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional chorismate mutase/prephenate dehydrogenase YP_002041931.1 2812869 R 423368 CDS YP_002041932.1 194446533 complement(2814000..2815070) 1 NC_011080.1 'catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive'; phospho-2-dehydro-3-deoxyheptonate aldolase 2815070 aroF 423368003011 aroF Salmonella enterica subsp. enterica serovar Newport str. SL254 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002041932.1 2814000 R 423368 CDS YP_002041933.1 194443003 complement(2815245..2815358) 1 NC_011080.1 identified by glimmer; hypothetical protein 2815358 423368003012 SNSL254_A2884 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041933.1 2815245 R 423368 CDS YP_002041934.1 194443081 2815510..2816028 1 NC_011080.1 hypothetical protein 2816028 423368003013 SNSL254_A2885 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041934.1 2815510 D 423368 CDS YP_002041935.1 194443826 2816021..2817241 1 NC_011080.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; hypothetical protein 2817241 423368003014 SNSL254_A2886 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041935.1 2816021 D 423368 CDS YP_002041936.1 194444739 complement(2817398..2817745) 1 NC_011080.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2817745 rplS 423368003015 rplS Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L19 YP_002041936.1 2817398 R 423368 CDS YP_002041937.1 194446273 complement(2817786..2818553) 1 NC_011080.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2818553 trmD 423368003016 trmD Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA (guanine-N(1)-)-methyltransferase YP_002041937.1 2817786 R 423368 CDS YP_002041938.1 194445761 complement(2818598..2819149) 1 NC_011080.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2819149 rimM 423368003017 rimM Salmonella enterica subsp. enterica serovar Newport str. SL254 16S rRNA-processing protein RimM YP_002041938.1 2818598 R 423368 CDS YP_002041939.1 194444399 complement(2819165..2819413) 1 NC_011080.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2819413 rpsP 423368003018 rpsP Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S16 YP_002041939.1 2819165 R 423368 CDS YP_002041940.1 194443897 complement(2819666..2821027) 1 NC_011080.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 2821027 ffh 423368003019 ffh Salmonella enterica subsp. enterica serovar Newport str. SL254 signal recognition particle protein YP_002041940.1 2819666 R 423368 CDS YP_008083641.1 513538119 2821193..2821984 1 NC_011080.1 hypothetical protein 2821984 423368003020 SNSL254_A2892 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083641.1 2821193 D 423368 CDS YP_002041941.1 194446583 2822049..2823290 1 NC_011080.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 2823290 423368003021 SNSL254_A2893 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041941.1 2822049 D 423368 CDS YP_002041942.1 194446072 2823375..2824016 1 NC_011080.1 hypothetical protein 2824016 423368003022 SNSL254_A2894 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041942.1 2823375 D 423368 CDS YP_002041943.1 194445818 complement(2824051..2824641) 1 NC_011080.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2824641 grpE 423368003023 grpE Salmonella enterica subsp. enterica serovar Newport str. SL254 heat shock protein GrpE YP_002041943.1 2824051 R 423368 CDS YP_002041944.1 194444082 2824764..2825642 1 NC_011080.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2825642 ppnK 423368003024 ppnK Salmonella enterica subsp. enterica serovar Newport str. SL254 inorganic polyphosphate/ATP-NAD kinase YP_002041944.1 2824764 D 423368 CDS YP_002041945.1 194443554 2825728..2827389 1 NC_011080.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; recombination and repair protein 2827389 recN 423368003025 recN Salmonella enterica subsp. enterica serovar Newport str. SL254 recombination and repair protein YP_002041945.1 2825728 D 423368 CDS YP_002041946.1 194442207 2827538..2827876 1 NC_011080.1 identified by match to protein family HMM PF04355; hypothetical protein 2827876 423368003026 SNSL254_A2898 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041946.1 2827538 D 423368 CDS YP_002041947.1 194443237 complement(2828042..2828332) 1 NC_011080.1 identified by match to protein family HMM PF03658; hypothetical protein 2828332 423368003027 SNSL254_A2899 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041947.1 2828042 R 423368 CDS YP_002041948.1 194446094 complement(2828322..2828798) 1 NC_011080.1 identified by match to protein family HMM PF03364; hypothetical protein 2828798 423368003028 SNSL254_A2900 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041948.1 2828322 R 423368 CDS YP_002041949.1 194446602 2828948..2829430 1 NC_011080.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; ssrA-binding protein 2829430 smpB 423368003029 smpB Salmonella enterica subsp. enterica serovar Newport str. SL254 ssrA-binding protein YP_002041949.1 2828948 D 423368 CDS YP_002041950.1 194444805 complement(2829576..2829728) 1 NC_011080.1 identified by glimmer; hypothetical protein 2829728 423368003030 SNSL254_A2902 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041950.1 2829576 R 423368 CDS YP_002041951.1 194444726 complement(2829935..2830087) 1 NC_011080.1 identified by glimmer; hypothetical protein 2830087 423368003031 SNSL254_A2904 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041951.1 2829935 R 423368 CDS YP_002041952.1 194444016 2830044..2841209 1 NC_011080.1 identified by match to protein family HMM TIGR01965; hypothetical protein 2841209 423368003032 SNSL254_A2903 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041952.1 2830044 D 423368 CDS YP_002041953.1 194442366 2841274..2842683 1 NC_011080.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844; type I secretion outer membrane protein TolC family 2842683 423368003033 SNSL254_A2905 Salmonella enterica subsp. enterica serovar Newport str. SL254 type I secretion outer membrane protein TolC family YP_002041953.1 2841274 D 423368 CDS YP_002041954.1 194446199 2842680..2844860 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR03375; protein secretion ABC efflux system permease/ATP-binding protein 2844860 423368003034 SNSL254_A2906 Salmonella enterica subsp. enterica serovar Newport str. SL254 protein secretion ABC efflux system permease/ATP-binding protein YP_002041954.1 2842680 D 423368 CDS YP_002041955.1 194446689 2844841..2846031 1 NC_011080.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; type I secretion membrane fusion protein HlyD family 2846031 423368003035 SNSL254_A2907 Salmonella enterica subsp. enterica serovar Newport str. SL254 type I secretion membrane fusion protein HlyD family YP_002041955.1 2844841 D 423368 CDS YP_002041956.1 194443664 2846553..2846795 1 NC_011080.1 identified by glimmer; hypothetical protein 2846795 423368003037 SNSL254_A2910 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041956.1 2846553 D 423368 CDS YP_002041958.1 194444719 complement(2848421..2849539) 1 NC_011080.1 hypothetical protein 2849539 423368003038 SNSL254_A2912 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041958.1 2848421 R 423368 CDS YP_002041959.1 194445107 2849950..2850090 1 NC_011080.1 identified by glimmer; hypothetical protein 2850090 423368003039 SNSL254_A2913 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041959.1 2849950 D 423368 CDS YP_002041960.1 194445780 complement(2850220..2851923) 1 NC_011080.1 phage protein 2851923 423368003040 SNSL254_A2914 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage protein YP_002041960.1 2850220 R 423368 CDS YP_002041961.1 194446163 complement(2851923..2852468) 1 NC_011080.1 phage protein 2852468 423368003041 SNSL254_A2915 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage protein YP_002041961.1 2851923 R 423368 CDS YP_002041962.1 194446759 complement(2852440..2853165) 1 NC_011080.1 hypothetical protein 2853165 423368003042 SNSL254_A2916 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041962.1 2852440 R 423368 CDS YP_002041963.1 194443860 complement(2853155..2853709) 1 NC_011080.1 identified by match to protein family HMM PF02413; gp20 2853709 423368003043 SNSL254_A2917 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp20 YP_002041963.1 2853155 R 423368 CDS YP_002041964.1 194443010 complement(2853722..2855827) 1 NC_011080.1 identified by match to protein family HMM PF03406; gp19 2855827 423368003044 SNSL254_A2918 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp19 YP_002041964.1 2853722 R 423368 CDS YP_002041965.1 194443350 complement(2855837..2856424) 1 NC_011080.1 phage protein 2856424 423368003045 SNSL254_A2919 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage protein YP_002041965.1 2855837 R 423368 CDS YP_002041966.1 194444780 complement(2856417..2857601) 1 NC_011080.1 phage protein 2857601 423368003046 SNSL254_A2920 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage protein YP_002041966.1 2856417 R 423368 CDS YP_002041967.1 194444705 complement(2857598..2857927) 1 NC_011080.1 phage protein 2857927 423368003047 SNSL254_A2921 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage protein YP_002041967.1 2857598 R 423368 CDS YP_002041968.1 194446116 complement(2857924..2859894) 1 NC_011080.1 identified by match to protein family HMM TIGR01760; hypothetical protein 2859894 423368003048 SNSL254_A2922 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041968.1 2857924 R 423368 CDS YP_002041969.1 194446785 complement(2860082..2860339) 1 NC_011080.1 phage protein 2860339 423368003049 SNSL254_A2923 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage protein YP_002041969.1 2860082 R 423368 CDS YP_002041970.1 194442331 complement(2860326..2860514) 1 NC_011080.1 identified by glimmer; hypothetical protein 2860514 423368003050 SNSL254_A2924 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041970.1 2860326 R 423368 CDS YP_002041971.1 194442827 complement(2860486..2860818) 1 NC_011080.1 hypothetical protein 2860818 423368003051 SNSL254_A2925 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041971.1 2860486 R 423368 CDS YP_002041972.1 194443568 complement(2860818..2861159) 1 NC_011080.1 hypothetical protein 2861159 423368003052 SNSL254_A2926 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041972.1 2860818 R 423368 CDS YP_002041973.1 194444179 complement(2861156..2861449) 1 NC_011080.1 identified by match to protein family HMM PF04550; phage holin family 2 2861449 423368003053 SNSL254_A2927 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage holin family 2 YP_002041973.1 2861156 R 423368 CDS YP_002041974.1 194446661 complement(2861459..2861914) 1 NC_011080.1 phage protein 2861914 423368003054 SNSL254_A2928 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage protein YP_002041974.1 2861459 R 423368 CDS YP_002041975.1 194445980 complement(2861911..2863038) 1 NC_011080.1 tail sheath 2863038 423368003055 SNSL254_A2929 Salmonella enterica subsp. enterica serovar Newport str. SL254 tail sheath YP_002041975.1 2861911 R 423368 CDS YP_002041976.1 194442409 complement(2863035..2863742) 1 NC_011080.1 hypothetical protein 2863742 423368003056 SNSL254_A2930 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041976.1 2863035 R 423368 CDS YP_002041977.1 194444215 complement(2863739..2864245) 1 NC_011080.1 hypothetical protein 2864245 423368003057 SNSL254_A2931 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041977.1 2863739 R 423368 CDS YP_002041978.1 194443378 complement(2864242..2864745) 1 NC_011080.1 identified by match to protein family HMM PF05926; phage head completion protein 2864745 423368003058 SNSL254_A2932 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage head completion protein YP_002041978.1 2864242 R 423368 CDS YP_002041979.1 194445236 complement(2864791..2865492) 1 NC_011080.1 identified by match to protein family HMM PF05944; phage terminase subunit 2865492 423368003059 SNSL254_A2933 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage terminase subunit YP_002041979.1 2864791 R 423368 CDS YP_002041980.1 194446389 complement(2865496..2866518) 1 NC_011080.1 identified by match to protein family HMM PF05125; match to protein family HMM TIGR01551; phage major capsid protein P2 family 2866518 423368003060 SNSL254_A2934 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage major capsid protein P2 family YP_002041980.1 2865496 R 423368 CDS YP_002041981.1 194445695 complement(2866580..2867383) 1 NC_011080.1 phage capsid scaffolding 2867383 423368003061 SNSL254_A2935 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage capsid scaffolding YP_002041981.1 2866580 R 423368 CDS YP_002041983.1 194443211 2867544..2869319 1 NC_011080.1 identified by match to protein family HMM PF03237; match to protein family HMM PF06056; hypothetical protein 2869319 423368003062 SNSL254_A2937 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041983.1 2867544 D 423368 CDS YP_002041984.1 194445286 2869316..2870377 1 NC_011080.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540; phage portal protein pbsx family 2870377 423368003063 SNSL254_A2938 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage portal protein pbsx family YP_002041984.1 2869316 D 423368 CDS YP_002041985.1 194445945 2870428..2870697 1 NC_011080.1 identified by match to protein family HMM PF04606; zinc-finger protein 2870697 423368003064 SNSL254_A2939 Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc-finger protein YP_002041985.1 2870428 D 423368 CDS YP_002041986.1 194444715 complement(2870671..2870868) 1 NC_011080.1 hypothetical protein 2870868 423368003065 SNSL254_A2940 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041986.1 2870671 R 423368 CDS YP_002041987.1 194442836 complement(2871002..2873023) 1 NC_011080.1 identified by match to protein family HMM PF05840; replication gene A protein 2873023 423368003066 SNSL254_A2941 Salmonella enterica subsp. enterica serovar Newport str. SL254 replication gene A protein YP_002041987.1 2871002 R 423368 CDS YP_002041988.1 194442233 complement(2873020..2873853) 1 NC_011080.1 identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; retron adenine methylase 2873853 423368003067 SNSL254_A2942 Salmonella enterica subsp. enterica serovar Newport str. SL254 retron adenine methylase YP_002041988.1 2873020 R 423368 CDS YP_002041989.1 194444392 complement(2873843..2874172) 1 NC_011080.1 gp91 2874172 423368003068 SNSL254_A2943 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp91 YP_002041989.1 2873843 R 423368 CDS YP_002041990.1 194445573 complement(2874163..2874393) 1 NC_011080.1 hypothetical protein 2874393 423368003069 SNSL254_A2944 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041990.1 2874163 R 423368 CDS YP_002041991.1 194445081 complement(2874461..2874862) 1 NC_011080.1 identified by glimmer; hypothetical protein 2874862 423368003070 SNSL254_A2945 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041991.1 2874461 R 423368 CDS YP_002041992.1 194446569 2874935..2875153 1 NC_011080.1 identified by glimmer; hypothetical protein 2875153 423368003071 SNSL254_A2946 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041992.1 2874935 D 423368 CDS YP_002041993.1 194446025 complement(2875277..2875504) 1 NC_011080.1 identified by glimmer; hypothetical protein 2875504 423368003072 SNSL254_A2947 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041993.1 2875277 R 423368 CDS YP_002041994.1 194444320 complement(2875514..2876017) 1 NC_011080.1 identified by match to protein family HMM PF06892; regulatory protein CII bacteriophage 186 2876017 423368003073 SNSL254_A2948 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein CII bacteriophage 186 YP_002041994.1 2875514 R 423368 CDS YP_002041995.1 194443634 complement(2876055..2876258) 1 NC_011080.1 identified by glimmer; hypothetical protein 2876258 423368003074 SNSL254_A2949 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041995.1 2876055 R 423368 CDS YP_002041996.1 194446392 2876683..2876970 1 NC_011080.1 repressor protein 2876970 423368003075 SNSL254_A2950 Salmonella enterica subsp. enterica serovar Newport str. SL254 repressor protein YP_002041996.1 2876683 D 423368 CDS YP_002041997.1 194445766 2876970..2877980 1 NC_011080.1 identified by match to protein family HMM PF00589; phage integrase 2877980 423368003076 SNSL254_A2951 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage integrase YP_002041997.1 2876970 D 423368 CDS YP_002041998.1 194442793 2878326..2879519 1 NC_011080.1 identified by match to protein family HMM PF00589; phage integrase family protein 2879519 423368003077 SNSL254_A2952 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage integrase family protein YP_002041998.1 2878326 D 423368 CDS YP_002041999.1 194442662 2879530..2880645 1 NC_011080.1 hypothetical protein 2880645 423368003078 SNSL254_A2953 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002041999.1 2879530 D 423368 CDS YP_002042000.1 194443820 2880633..2882402 1 NC_011080.1 identified by match to protein family HMM PF01935; hypothetical protein 2882402 423368003079 SNSL254_A2954 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042000.1 2880633 D 423368 CDS YP_002042001.1 194443075 complement(2882609..2883175) 1 NC_011080.1 identified by match to protein family HMM PF07455; phage polarity suppression protein 2883175 423368003080 SNSL254_A2955 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage polarity suppression protein YP_002042001.1 2882609 R 423368 CDS YP_002042002.1 194445352 complement(2883192..2883437) 1 NC_011080.1 identified by match to protein family HMM PF04606; phage transcriptional activator, Ogr/delta 2883437 423368003081 SNSL254_A2956 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage transcriptional activator, Ogr/delta YP_002042002.1 2883192 R 423368 CDS YP_002042003.1 194444666 complement(2883434..2884129) 1 NC_011080.1 glycoprotein 3 2884129 423368003082 SNSL254_A2958 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycoprotein 3 YP_002042003.1 2883434 R 423368 CDS YP_002042004.1 194446161 2884097..2884273 1 NC_011080.1 identified by glimmer; hypothetical protein 2884273 423368003083 SNSL254_A2957 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042004.1 2884097 D 423368 CDS YP_002042005.1 194446415 2884243..2884389 1 NC_011080.1 identified by glimmer; hypothetical protein 2884389 423368003084 SNSL254_A2959 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042005.1 2884243 D 423368 CDS YP_002042006.1 194446612 2884712..2884978 1 NC_011080.1 identified by match to protein family HMM PF05930; phage DNA binding protein 2884978 423368003085 SNSL254_A2960 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage DNA binding protein YP_002042006.1 2884712 D 423368 CDS YP_002042007.1 194444807 2885338..2885532 1 NC_011080.1 phage immunity repressor protein 2885532 423368003086 SNSL254_A2961 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage immunity repressor protein YP_002042007.1 2885338 D 423368 CDS YP_002042008.1 194442840 2885577..2885756 1 NC_011080.1 hypothetical protein 2885756 423368003087 SNSL254_A2962 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042008.1 2885577 D 423368 CDS YP_002042009.1 194446091 2885753..2886073 1 NC_011080.1 hypothetical protein 2886073 423368003088 SNSL254_A2963 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042009.1 2885753 D 423368 CDS YP_002042010.1 194442419 2886088..2888421 1 NC_011080.1 identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM PF08273; match to protein family HMM PF08706; match to protein family HMM TIGR01613; bacteriophage P4 DNA primase 2888421 423368003089 SNSL254_A2964 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage P4 DNA primase YP_002042010.1 2886088 D 423368 CDS YP_002042011.2 448967543 complement(2889262..2889801) 1 NC_011080.1 identified by match to protein family HMM PF03614; phase 1 flagellin gene repressor 2889801 423368003090 SNSL254_A2965 Salmonella enterica subsp. enterica serovar Newport str. SL254 phase 1 flagellin gene repressor YP_002042011.2 2889262 R 423368 CDS YP_002042012.1 194445420 complement(2889869..2891389) 1 NC_011080.1 'structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes'; flagellin 2891389 423368003091 SNSL254_A2966 Salmonella enterica subsp. enterica serovar Newport str. SL254 flagellin YP_002042012.1 2889869 R 423368 CDS YP_002042013.1 194444172 2891481..2892047 1 NC_011080.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796; DNA-invertase hin 2892047 423368003092 SNSL254_A2967 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-invertase hin YP_002042013.1 2891481 D 423368 CDS YP_002042014.1 194446596 2893015..2894130 1 NC_011080.1 identified by match to protein family HMM PF06722; hypothetical protein 2894130 423368003093 SNSL254_A2968 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042014.1 2893015 D 423368 CDS YP_002042015.1 194442710 2894211..2897867 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ATP binding cassette 2897867 423368003094 SNSL254_A2969 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP binding cassette YP_002042015.1 2894211 D 423368 CDS YP_002042016.1 194446279 2897977..2899221 1 NC_011080.1 identified by match to protein family HMM PF00756; enterochelin esterase 2899221 423368003095 SNSL254_A2970 Salmonella enterica subsp. enterica serovar Newport str. SL254 enterochelin esterase YP_002042016.1 2897977 D 423368 CDS YP_002042017.1 194442470 2899253..2900188 1 NC_011080.1 hypothetical protein 2900188 423368003096 SNSL254_A2971 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042017.1 2899253 D 423368 CDS YP_002042018.1 194445596 complement(2900230..2902404) 1 NC_011080.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 2902404 423368003097 SNSL254_A2972 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane receptor FepA YP_002042018.1 2900230 R 423368 CDS YP_002042019.1 194444294 complement(2903442..2904542) 1 NC_011080.1 identified by match to protein family HMM PF00805; effector protein pipB2 2904542 423368003098 SNSL254_A2974 Salmonella enterica subsp. enterica serovar Newport str. SL254 effector protein pipB2 YP_002042019.1 2903442 R 423368 CDS YP_002042020.1 194445008 2905012..2905941 1 NC_011080.1 homologous sequence to VirK in Shigella; identified by match to protein family HMM PF04393; virulence protein 2905941 423368003099 SNSL254_A2975 Salmonella enterica subsp. enterica serovar Newport str. SL254 virulence protein YP_002042020.1 2905012 D 423368 CDS YP_002042021.1 194443583 2906041..2906238 1 NC_011080.1 identified by glimmer; hypothetical protein 2906238 423368003100 SNSL254_A2976 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042021.1 2906041 D 423368 CDS YP_002042022.1 194443722 2906235..2907131 1 NC_011080.1 identified by match to protein family HMM PF07395; hypothetical protein 2907131 423368003101 SNSL254_A2977 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042022.1 2906235 D 423368 CDS YP_002042023.1 194446034 2907647..2907760 1 NC_011080.1 hypothetical protein 2907760 423368003102 SNSL254_A2978 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042023.1 2907647 D 423368 CDS YP_002042024.1 194445294 complement(2907853..2908866) 1 NC_011080.1 identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802; high-affinity nickel transport protein 2908866 hoxN 423368003103 hoxN Salmonella enterica subsp. enterica serovar Newport str. SL254 high-affinity nickel transport protein YP_002042024.1 2907853 R 423368 CDS YP_002042025.1 194445869 complement(2908999..2910414) 1 NC_011080.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521; tricarboxylic transport regulatory protein 2910414 423368003104 SNSL254_A2980 Salmonella enterica subsp. enterica serovar Newport str. SL254 tricarboxylic transport regulatory protein YP_002042025.1 2908999 R 423368 CDS YP_002042026.1 194444892 complement(2910401..2911075) 1 NC_011080.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator TctD 2911075 423368003105 SNSL254_A2981 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator TctD YP_002042026.1 2910401 R 423368 CDS YP_002042027.1 194446782 2911230..2912207 1 NC_011080.1 identified by match to protein family HMM PF03401; tricarboxylic transport 2912207 423368003106 SNSL254_A2982 Salmonella enterica subsp. enterica serovar Newport str. SL254 tricarboxylic transport YP_002042027.1 2911230 D 423368 CDS YP_002042028.1 194446102 2912222..2912653 1 NC_011080.1 tricarboxylic transport 2912653 423368003107 SNSL254_A2983 Salmonella enterica subsp. enterica serovar Newport str. SL254 tricarboxylic transport YP_002042028.1 2912222 D 423368 CDS YP_002042029.1 194442858 2912664..2914178 1 NC_011080.1 identified by match to protein family HMM PF01970; hypothetical protein 2914178 423368003108 SNSL254_A2984 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042029.1 2912664 D 423368 CDS YP_002042030.1 194442209 2914342..2914455 1 NC_011080.1 identified by glimmer; hypothetical protein 2914455 423368003109 SNSL254_A2985 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042030.1 2914342 D 423368 CDS YP_002042031.1 194443956 2914482..2915459 1 NC_011080.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 2915459 423368003110 SNSL254_A2986 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042031.1 2914482 D 423368 CDS YP_002042032.1 194443509 2915485..2916753 1 NC_011080.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2916753 423368003111 SNSL254_A2987 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydroxyglutarate oxidase YP_002042032.1 2915485 D 423368 CDS YP_002042033.1 194444801 2916775..2918223 1 NC_011080.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2918223 gabD 423368003112 gabD Salmonella enterica subsp. enterica serovar Newport str. SL254 succinate-semialdehyde dehydrogenase I YP_002042033.1 2916775 D 423368 CDS YP_002042034.1 194446692 2918238..2919521 1 NC_011080.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2919521 gabT 423368003113 gabT Salmonella enterica subsp. enterica serovar Newport str. SL254 4-aminobutyrate aminotransferase YP_002042034.1 2918238 D 423368 CDS YP_002042035.1 194444838 2919651..2921051 1 NC_011080.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773; gamma-aminobutyrate transporter 2921051 gabP 423368003114 gabP Salmonella enterica subsp. enterica serovar Newport str. SL254 gamma-aminobutyrate transporter YP_002042035.1 2919651 D 423368 CDS YP_002042036.1 194445931 2921093..2921770 1 NC_011080.1 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2921770 423368003115 SNSL254_A2991 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator CsiR YP_002042036.1 2921093 D 423368 CDS YP_002042037.1 194445305 complement(2921792..2922241) 1 NC_011080.1 identified by match to protein family HMM PF01476; match to protein family HMM PF04972; LysM domain/BON superfamily protein 2922241 423368003116 SNSL254_A2992 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysM domain/BON superfamily protein YP_002042037.1 2921792 R 423368 CDS YP_002042038.1 194444520 complement(2922341..2922499) 1 NC_011080.1 identified by match to protein family HMM PF01679; hypothetical protein 2922499 423368003117 SNSL254_A2993 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042038.1 2922341 R 423368 CDS YP_002042039.1 194444472 2922682..2922981 1 NC_011080.1 identified by match to protein family HMM PF01022; regulatory protein ArsR 2922981 423368003118 SNSL254_A2994 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein ArsR YP_002042039.1 2922682 D 423368 CDS YP_002042040.1 194443803 2922991..2923518 1 NC_011080.1 identified by match to protein family HMM PF00581; hypothetical protein 2923518 423368003119 SNSL254_A2995 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042040.1 2922991 D 423368 CDS YP_002042041.1 194443171 2923597..2923776 1 NC_011080.1 hypothetical protein 2923776 423368003120 SNSL254_A2996 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042041.1 2923597 D 423368 CDS YP_002042042.1 194442504 complement(2923866..2924267) 1 NC_011080.1 identified by match to protein family HMM PF00816; DNA binding protein 2924267 423368003121 SNSL254_A2997 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA binding protein YP_002042042.1 2923866 R 423368 CDS YP_002042044.1 194442627 2924966..2925415 1 NC_011080.1 identified by match to protein family HMM PF06610; hypothetical protein 2925415 423368003122 SNSL254_A2999 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042044.1 2924966 D 423368 CDS YP_002042045.1 194444234 complement(2925450..2925800) 1 NC_011080.1 identified by match to protein family HMM PF09400; hypothetical protein 2925800 423368003123 SNSL254_A3000 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042045.1 2925450 R 423368 CDS YP_002042046.1 194443835 2925962..2926288 1 NC_011080.1 identified by match to protein family HMM PF05957; hypothetical protein 2926288 423368003124 SNSL254_A3001 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042046.1 2925962 D 423368 CDS YP_002042047.1 194442950 complement(2926372..2927706) 1 NC_011080.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2927706 423368003125 SNSL254_A3002 Salmonella enterica subsp. enterica serovar Newport str. SL254 GntR family transcriptional regulator YP_002042047.1 2926372 R 423368 CDS YP_002042048.1 194442609 2927792..2928226 1 NC_011080.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase 2928226 423368003126 SNSL254_A3003 Salmonella enterica subsp. enterica serovar Newport str. SL254 alkylhydroperoxidase YP_002042048.1 2927792 D 423368 CDS YP_002042049.1 194446293 2928250..2928399 1 NC_011080.1 hypothetical protein 2928399 423368003127 SNSL254_A3004 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042049.1 2928250 D 423368 CDS YP_002042050.1 194445912 2928498..2928743 1 NC_011080.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; glutaredoxin-like protein 2928743 423368003128 SNSL254_A3005 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutaredoxin-like protein YP_002042050.1 2928498 D 423368 CDS YP_002042051.1 194445189 2928740..2929150 1 NC_011080.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2929150 nrdI 423368003129 nrdI Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonucleotide reductase stimulatory protein YP_002042051.1 2928740 D 423368 CDS YP_002042052.1 194445580 2929123..2931267 1 NC_011080.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2931267 423368003130 SNSL254_A3007 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonucleotide-diphosphate reductase subunit alpha YP_002042052.1 2929123 D 423368 CDS YP_002042053.1 194442875 2931278..2932237 1 NC_011080.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2932237 nrdF 423368003131 nrdF Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonucleotide-diphosphate reductase subunit beta YP_002042053.1 2931278 D 423368 CDS YP_002042054.1 194442245 2932592..2933794 1 NC_011080.1 with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2933794 proV 423368003132 proV Salmonella enterica subsp. enterica serovar Newport str. SL254 glycine betaine transporter ATP-binding subunit YP_002042054.1 2932592 D 423368 CDS YP_002042055.1 194444232 2933787..2934851 1 NC_011080.1 with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2934851 423368003133 SNSL254_A3010 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycine betaine transporter membrane protein YP_002042055.1 2933787 D 423368 CDS YP_002042056.1 194443724 2934921..2935916 1 NC_011080.1 'with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine'; glycine betaine transporter periplasmic subunit 2935916 proX 423368003134 proX Salmonella enterica subsp. enterica serovar Newport str. SL254 glycine betaine transporter periplasmic subunit YP_002042056.1 2934921 D 423368 CDS YP_002042057.1 194443474 2936081..2937265 1 NC_011080.1 identified by match to protein family HMM PF07690; major facilitator family transporter protein 2937265 423368003135 SNSL254_A3012 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator family transporter protein YP_002042057.1 2936081 D 423368 CDS YP_002042058.1 194445291 2937762..2938292 1 NC_011080.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2938292 mprA 423368003136 mprA Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional repressor MprA YP_002042058.1 2937762 D 423368 CDS YP_002042059.1 194445068 2938419..2939591 1 NC_011080.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR00998; multidrug resistance protein A 2939591 emrA 423368003137 emrA Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug resistance protein A YP_002042059.1 2938419 D 423368 CDS YP_002042060.1 194446300 2939608..2941146 1 NC_011080.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein B 2941146 emrB 423368003138 emrB Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug resistance protein B YP_002042060.1 2939608 D 423368 CDS YP_002042061.1 194446041 complement(2941195..2942565) 1 NC_011080.1 glycoporin 2942565 423368003139 SNSL254_A3016 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycoporin YP_002042061.1 2941195 R 423368 CDS YP_002042062.1 194443208 2942710..2942853 1 NC_011080.1 hypothetical protein 2942853 423368003140 SNSL254_A3017 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042062.1 2942710 D 423368 CDS YP_002042063.1 194446617 complement(2942911..2943426) 1 NC_011080.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 2943426 luxS 423368003141 luxS Salmonella enterica subsp. enterica serovar Newport str. SL254 S-ribosylhomocysteinase YP_002042063.1 2942911 R 423368 CDS YP_002042064.1 194445978 complement(2943576..2945132) 1 NC_011080.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 2945132 gshA 423368003143 gshA Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate--cysteine ligase YP_002042064.1 2943576 R 423368 CDS YP_002042065.1 194442895 complement(2945209..2945634) 1 NC_011080.1 hypothetical protein 2945634 423368003144 SNSL254_A3021 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042065.1 2945209 R 423368 CDS YP_002042066.1 194442379 complement(2945631..2946197) 1 NC_011080.1 'YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent'; fructose-1-phosphatase 2946197 423368003145 SNSL254_A3022 Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose-1-phosphatase YP_002042066.1 2945631 R 423368 CDS YP_002042067.1 194443901 complement(2947450..2947635) 1 NC_011080.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 2947635 csrA 423368003151 csrA Salmonella enterica subsp. enterica serovar Newport str. SL254 carbon storage regulator YP_002042067.1 2947450 R 423368 CDS YP_002042068.1 194443356 complement(2947870..2950500) 1 NC_011080.1 'Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; alanyl-tRNA synthetase 2950500 alaS 423368003152 alaS Salmonella enterica subsp. enterica serovar Newport str. SL254 alanyl-tRNA synthetase YP_002042068.1 2947870 R 423368 CDS YP_002042069.1 194444793 complement(2950736..2951236) 1 NC_011080.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2951236 recX 423368003153 recX Salmonella enterica subsp. enterica serovar Newport str. SL254 recombination regulator RecX YP_002042069.1 2950736 R 423368 CDS YP_002042070.1 194446772 complement(2951353..2952414) 1 NC_011080.1 'catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs'; recombinase A 2952414 recA 423368003154 recA Salmonella enterica subsp. enterica serovar Newport str. SL254 recombinase A YP_002042070.1 2951353 R 423368 CDS YP_002042071.1 194445808 complement(2952499..2952996) 1 NC_011080.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A 2952996 423368003155 SNSL254_A3032 Salmonella enterica subsp. enterica serovar Newport str. SL254 competence damage-inducible protein A YP_002042071.1 2952499 R 423368 CDS YP_002042072.1 194443096 complement(2953475..2954554) 1 NC_011080.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 2954554 mltB 423368003156 mltB Salmonella enterica subsp. enterica serovar Newport str. SL254 murein hydrolase B YP_002042072.1 2953475 R 423368 CDS YP_002042073.1 194444905 2954808..2955371 1 NC_011080.1 identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821; glucitol/sorbitol permease iic component 2955371 423368003157 SNSL254_A3034 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucitol/sorbitol permease iic component YP_002042073.1 2954808 D 423368 CDS YP_002042074.1 194445373 2955368..2956339 1 NC_011080.1 identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825; glucitol/sorbitol-specific phosphotransferase enzyme iib component 2956339 423368003158 SNSL254_A3035 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucitol/sorbitol-specific phosphotransferase enzyme iib component YP_002042074.1 2955368 D 423368 CDS YP_002042075.1 194443729 2956351..2956713 1 NC_011080.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 2956713 423368003159 SNSL254_A3036 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system glucitol/sorbitol-specific transporter subunit IIA YP_002042075.1 2956351 D 423368 CDS YP_002042076.1 194444244 2956725..2957504 1 NC_011080.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 2957504 srlD 423368003160 srlD Salmonella enterica subsp. enterica serovar Newport str. SL254 sorbitol-6-phosphate dehydrogenase YP_002042076.1 2956725 D 423368 CDS YP_002042077.1 194444597 2957581..2957940 1 NC_011080.1 regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2957940 423368003161 SNSL254_A3038 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator GutM YP_002042077.1 2957581 D 423368 CDS YP_002042078.1 194445233 2958138..2958911 1 NC_011080.1 regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2958911 srlR 423368003162 srlR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional repressor SrlR YP_002042078.1 2958138 D 423368 CDS YP_002042079.1 194442564 2958904..2959869 1 NC_011080.1 catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 2959869 gutQ 423368003163 gutQ Salmonella enterica subsp. enterica serovar Newport str. SL254 D-arabinose 5-phosphate isomerase YP_002042079.1 2958904 D 423368 CDS YP_002042080.1 194445900 complement(2959866..2961386) 1 NC_011080.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 2961386 423368003164 SNSL254_A3041 Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic nitric oxide reductase transcriptional regulator YP_002042080.1 2959866 R 423368 CDS YP_002042081.1 194443134 2961572..2963011 1 NC_011080.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2963011 norV 423368003165 norV Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic nitric oxide reductase flavorubredoxin YP_002042081.1 2961572 D 423368 CDS YP_002042082.1 194443836 2963008..2964141 1 NC_011080.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2964141 423368003166 SNSL254_A3043 Salmonella enterica subsp. enterica serovar Newport str. SL254 nitric oxide reductase YP_002042082.1 2963008 D 423368 CDS YP_002042083.1 194444479 complement(2964238..2966478) 1 NC_011080.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 2966478 hypF 423368003167 hypF Salmonella enterica subsp. enterica serovar Newport str. SL254 [NiFe] hydrogenase maturation protein HypF YP_002042083.1 2964238 R 423368 CDS YP_002042084.1 194443395 complement(2966624..2967169) 1 NC_011080.1 involved in electron transport from formate to hydrogen; electron transport protein HydN 2967169 423368003168 SNSL254_A3045 Salmonella enterica subsp. enterica serovar Newport str. SL254 electron transport protein HydN YP_002042084.1 2966624 R 423368 CDS YP_002042085.1 194443016 complement(2967138..2967272) 1 NC_011080.1 hypothetical protein 2967272 423368003169 SNSL254_A3046 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042085.1 2967138 R 423368 CDS YP_002042086.1 194442360 complement(2967370..2968179) 1 NC_011080.1 periplasmic or exported protein 2968179 423368003170 SNSL254_A3047 Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic or exported protein YP_002042086.1 2967370 R 423368 CDS YP_002042087.1 194444140 complement(2968206..2968676) 1 NC_011080.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 2968676 hycI 423368003171 hycI Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 3 maturation protease YP_002042087.1 2968206 R 423368 CDS YP_002042088.1 194443476 complement(2968669..2969079) 1 NC_011080.1 identified by match to protein family HMM PF07450; formate hydrogenlyase maturation protein 2969079 423368003172 SNSL254_A3049 Salmonella enterica subsp. enterica serovar Newport str. SL254 formate hydrogenlyase maturation protein YP_002042088.1 2968669 R 423368 CDS YP_002042089.1 194445653 complement(2969076..2969843) 1 NC_011080.1 identified by match to protein family HMM PF01058; formate hydrogenlyase subunit G 2969843 hycG 423368003173 hycG Salmonella enterica subsp. enterica serovar Newport str. SL254 formate hydrogenlyase subunit G YP_002042089.1 2969076 R 423368 CDS YP_002042090.1 194445625 complement(2969843..2970385) 1 NC_011080.1 'electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate'; formate hydrogenlyase complex iron-sulfur subunit 2970385 hycF 423368003174 hycF Salmonella enterica subsp. enterica serovar Newport str. SL254 formate hydrogenlyase complex iron-sulfur subunit YP_002042090.1 2969843 R 423368 CDS YP_002042091.1 194442683 complement(2970395..2972104) 1 NC_011080.1 identified by match to protein family HMM PF00329; match to protein family HMM PF00346; formate hydrogenlyase subunit E 2972104 hycE 423368003175 hycE Salmonella enterica subsp. enterica serovar Newport str. SL254 formate hydrogenlyase subunit E YP_002042091.1 2970395 R 423368 CDS YP_002042092.1 194446662 complement(2972122..2973045) 1 NC_011080.1 identified by match to protein family HMM PF00146; formate hydrogenlyase subunit D 2973045 hycD 423368003176 hycD Salmonella enterica subsp. enterica serovar Newport str. SL254 formate hydrogenlyase subunit D YP_002042092.1 2972122 R 423368 CDS YP_002042093.1 194443059 complement(2973048..2974874) 1 NC_011080.1 'catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3)'; formate hydrogenlyase subunit 3 2974874 hycC 423368003177 hycC Salmonella enterica subsp. enterica serovar Newport str. SL254 formate hydrogenlyase subunit 3 YP_002042093.1 2973048 R 423368 CDS YP_002042094.1 194442481 complement(2974874..2975482) 1 NC_011080.1 identified by match to protein family HMM PF00037; formate hydrogenlyase subunit B 2975482 hycB 423368003178 hycB Salmonella enterica subsp. enterica serovar Newport str. SL254 formate hydrogenlyase subunit B YP_002042094.1 2974874 R 423368 CDS YP_002042096.1 194446061 complement(2975628..2976089) 1 NC_011080.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA 2976089 423368003179 SNSL254_A3057 Salmonella enterica subsp. enterica serovar Newport str. SL254 formate hydrogenlyase regulatory protein HycA YP_002042096.1 2975628 R 423368 CDS YP_002042097.1 194444558 2976135..2976338 1 NC_011080.1 identified by glimmer; hypothetical protein 2976338 423368003180 SNSL254_A3058 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042097.1 2976135 D 423368 CDS YP_002042098.1 194445078 2976299..2976655 1 NC_011080.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 2976655 hypA 423368003181 hypA Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase nickel incorporation protein YP_002042098.1 2976299 D 423368 CDS YP_002042099.1 194443501 2976724..2977596 1 NC_011080.1 GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 2977596 hypB 423368003182 hypB Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase nickel incorporation protein HypB YP_002042099.1 2976724 D 423368 CDS YP_002042100.1 194442886 2977587..2977859 1 NC_011080.1 'HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase'; hydrogenase assembly chaperone 2977859 hypC2 423368003183 hypC2 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase assembly chaperone YP_002042100.1 2977587 D 423368 CDS YP_002042101.1 194442573 2977859..2978980 1 NC_011080.1 identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 2978980 hypD 423368003184 hypD Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase expression/formation protein HypD YP_002042101.1 2977859 D 423368 CDS YP_002042102.1 194446535 2978977..2979987 1 NC_011080.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 2979987 hypE 423368003185 hypE Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase expression/formation protein HypE YP_002042102.1 2978977 D 423368 CDS YP_002042103.1 194445974 2980206..2982284 1 NC_011080.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; formate hydrogenlyase transcriptional activator 2982284 423368003186 SNSL254_A3064 Salmonella enterica subsp. enterica serovar Newport str. SL254 formate hydrogenlyase transcriptional activator YP_002042103.1 2980206 D 423368 CDS YP_002042104.1 194445646 complement(2982346..2982690) 1 NC_011080.1 hypothetical protein 2982690 423368003187 SNSL254_A3065 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042104.1 2982346 R 423368 CDS YP_002042105.1 194446797 2982872..2983789 1 NC_011080.1 identified by match to protein family HMM PF01297; periplasmic chelated iron-binding protein YfeA 2983789 423368003188 SNSL254_A3066 Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic chelated iron-binding protein YfeA YP_002042105.1 2982872 D 423368 CDS YP_002042106.1 194445736 2983786..2984607 1 NC_011080.1 identified by match to protein family HMM PF00005; chelated iron transport system membrane protein YfeB 2984607 423368003189 SNSL254_A3067 Salmonella enterica subsp. enterica serovar Newport str. SL254 chelated iron transport system membrane protein YfeB YP_002042106.1 2983786 D 423368 CDS YP_002042107.1 194442797 2984604..2985464 1 NC_011080.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; chelated iron transport system membrane protein YfeC 2985464 423368003190 SNSL254_A3068 Salmonella enterica subsp. enterica serovar Newport str. SL254 chelated iron transport system membrane protein YfeC YP_002042107.1 2984604 D 423368 CDS YP_002042108.1 194442214 2985455..2986303 1 NC_011080.1 identified by match to protein family HMM PF00950; chelated iron transport system membrane protein YfeD 2986303 423368003191 SNSL254_A3069 Salmonella enterica subsp. enterica serovar Newport str. SL254 chelated iron transport system membrane protein YfeD YP_002042108.1 2985455 D 423368 CDS YP_002042109.1 194444777 complement(2987472..2988227) 1 NC_011080.1 transcriptional regulator 2988227 423368003193 SNSL254_A3071 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002042109.1 2987472 R 423368 CDS YP_002042110.1 194446606 complement(2988611..2989498) 1 NC_011080.1 identified by match to protein family HMM PF00165; araC family transcriptional regulator 2989498 423368003194 SNSL254_A3072 Salmonella enterica subsp. enterica serovar Newport str. SL254 araC family transcriptional regulator YP_002042110.1 2988611 R 423368 CDS YP_002042111.2 448967544 complement(2989843..2990295) 1 NC_011080.1 hypothetical protein 2990295 423368003195 SNSL254_A3073 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042111.2 2989843 R 423368 CDS YP_002042112.1 194443170 complement(2990292..2990972) 1 NC_011080.1 oxygen-regulated invasion protein OrgB 2990972 423368003196 SNSL254_A3074 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxygen-regulated invasion protein OrgB YP_002042112.1 2990292 R 423368 CDS YP_002042113.1 194442523 complement(2990929..2991507) 1 NC_011080.1 identified by match to protein family HMM PF09482; match to protein family HMM TIGR02555; type III secretion apparatus protein OrgA/MxiK 2991507 423368003197 SNSL254_A3075 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion apparatus protein OrgA/MxiK YP_002042113.1 2990929 R 423368 CDS YP_002042114.1 194446696 complement(2991500..2992258) 1 NC_011080.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein YscJ/HrcJ family 2992258 423368003198 SNSL254_A3076 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion apparatus lipoprotein YscJ/HrcJ family YP_002042114.1 2991500 R 423368 CDS YP_002042115.2 448967545 complement(2992255..2992560) 1 NC_011080.1 hypothetical protein 2992560 423368003199 SNSL254_A3077 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042115.2 2992255 R 423368 CDS YP_002042116.1 194445347 complement(2992579..2992821) 1 NC_011080.1 identified by match to protein family HMM PF09392; match to protein family HMM TIGR02105; type III secretion apparatus needle protein 2992821 eprI 423368003200 eprI Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion apparatus needle protein YP_002042116.1 2992579 R 423368 CDS YP_002042117.2 448967546 complement(2992846..2994024) 1 NC_011080.1 identified by match to protein family HMM PF09480; match to protein family HMM TIGR02554; type III secretion apparatus protein PrgH/EprH 2994024 eprH 423368003201 eprH Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion apparatus protein PrgH/EprH YP_002042117.2 2992846 R 423368 CDS YP_002042118.1 194442403 2994340..2995269 1 NC_011080.1 identified by match to protein family HMM PF00165; transcriptional regulator HilD 2995269 423368003202 SNSL254_A3080 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator HilD YP_002042118.1 2994340 D 423368 CDS YP_002042119.1 194443739 2996360..2998021 1 NC_011080.1 Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 2998021 423368003203 SNSL254_A3081 Salmonella enterica subsp. enterica serovar Newport str. SL254 invasion protein regulator YP_002042119.1 2996360 D 423368 CDS YP_002042120.1 194443316 2998039..2998521 1 NC_011080.1 identified by match to protein family HMM PF01464; cell invasion protein 2998521 423368003204 SNSL254_A3082 Salmonella enterica subsp. enterica serovar Newport str. SL254 cell invasion protein YP_002042120.1 2998039 D 423368 CDS YP_002042121.1 194442698 complement(2998575..3000182) 1 NC_011080.1 identified by match to protein family HMM PF00102; match to protein family HMM PF03545; match to protein family HMM PF09119; effector protein SptP 3000182 423368003205 SNSL254_A3083 Salmonella enterica subsp. enterica serovar Newport str. SL254 effector protein SptP YP_002042121.1 2998575 R 423368 CDS YP_002042122.1 194442447 complement(3000193..3000585) 1 NC_011080.1 identified by match to protein family HMM PF05932; secretion chaperone 3000585 423368003206 SNSL254_A3084 Salmonella enterica subsp. enterica serovar Newport str. SL254 secretion chaperone YP_002042122.1 3000193 R 423368 CDS YP_002042123.1 194443936 complement(3000612..3000836) 1 NC_011080.1 hypothetical protein 3000836 423368003207 SNSL254_A3085 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042123.1 3000612 R 423368 CDS YP_002042124.1 194442355 complement(3000916..3001164) 1 NC_011080.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 3001164 423368003208 SNSL254_A3086 Salmonella enterica subsp. enterica serovar Newport str. SL254 acyl carrier protein YP_002042124.1 3000916 R 423368 CDS YP_002042125.1 194444039 complement(3001183..3003195) 1 NC_011080.1 identified by match to protein family HMM PF09052; cell invasion protein SipA 3003195 423368003209 SNSL254_A3087 Salmonella enterica subsp. enterica serovar Newport str. SL254 cell invasion protein SipA YP_002042125.1 3001183 R 423368 CDS YP_008083642.1 513538120 complement(3003259..3004290) 1 NC_011080.1 type III effector protein; cell invasion protein SipD 3004290 423368003210 SNSL254_A3088 Salmonella enterica subsp. enterica serovar Newport str. SL254 cell invasion protein SipD YP_008083642.1 3003259 R 423368 CDS YP_008083643.1 513538121 complement(3004361..3005590) 1 NC_011080.1 pathogenicity island 1 effector protein SipC; invasin protein SipC 3005590 423368003211 SNSL254_A3089 Salmonella enterica subsp. enterica serovar Newport str. SL254 invasin protein SipC YP_008083643.1 3004361 R 423368 CDS YP_002042126.1 194444977 complement(3005618..3007399) 1 NC_011080.1 identified by match to protein family HMM PF03518; cell invasion protein SipB 3007399 423368003212 SNSL254_A3090 Salmonella enterica subsp. enterica serovar Newport str. SL254 cell invasion protein SipB YP_002042126.1 3005618 R 423368 CDS YP_002042127.1 194446745 complement(3007402..3007899) 1 NC_011080.1 identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 3007899 423368003213 SNSL254_A3091 Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion low calcium response chaperone LcrH/SycD YP_002042127.1 3007402 R 423368 CDS YP_002042128.1 194444022 complement(3008037..3009107) 1 NC_011080.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS 3009107 423368003214 SNSL254_A3092 Salmonella enterica subsp. enterica serovar Newport str. SL254 surface presentation of antigens protein SpaS YP_002042128.1 3008037 R 423368 CDS YP_002042129.1 194443393 complement(3009094..3009885) 1 NC_011080.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT 3009885 epaR 423368003215 epaR Salmonella enterica subsp. enterica serovar Newport str. SL254 type III secretion apparatus protein SpaR/YscT/HrcT YP_002042129.1 3009094 R 423368 CDS YP_002042130.1 194446370 complement(3009889..3010149) 1 NC_011080.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403; hypothetical protein 3010149 423368003216 SNSL254_A3094 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042130.1 3009889 R 423368 CDS YP_002042131.1 194445004 complement(3010175..3010849) 1 NC_011080.1 part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP 3010849 spaP 423368003217 spaP Salmonella enterica subsp. enterica serovar Newport str. SL254 surface presentation of antigens protein SpaP YP_002042131.1 3010175 R 423368 CDS YP_002042132.1 194442226 complement(3010839..3011750) 1 NC_011080.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO 3011750 epaO 423368003218 epaO Salmonella enterica subsp. enterica serovar Newport str. SL254 surface presentation of antigens protein SpaO YP_002042132.1 3010839 R 423368 CDS YP_002042133.1 194442890 complement(3011750..3012760) 1 NC_011080.1 identified by match to protein family HMM PF02510; antigen presentation protein SpaN 3012760 423368003219 SNSL254_A3097 Salmonella enterica subsp. enterica serovar Newport str. SL254 antigen presentation protein SpaN YP_002042133.1 3011750 R 423368 CDS YP_002042134.1 194443542 complement(3012760..3013203) 1 NC_011080.1 identified by match to protein family HMM PF02090; surface presentation of antigens protein SpaM 3013203 423368003220 SNSL254_A3098 Salmonella enterica subsp. enterica serovar Newport str. SL254 surface presentation of antigens protein SpaM YP_002042134.1 3012760 R 423368 CDS YP_002042135.1 194444136 complement(3013181..3014476) 1 NC_011080.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL 3014476 423368003221 SNSL254_A3099 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP synthase SpaL YP_002042135.1 3013181 R 423368 CDS YP_002042136.1 194443915 complement(3014473..3014880) 1 NC_011080.1 identified by match to protein family HMM PF03519; surface presentation of antigens protein SpaK 3014880 423368003222 SNSL254_A3100 Salmonella enterica subsp. enterica serovar Newport str. SL254 surface presentation of antigens protein SpaK YP_002042136.1 3014473 R 423368 CDS YP_002042137.1 194444273 complement(3014904..3016961) 1 NC_011080.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399; invasion protein InvA 3016961 423368003223 SNSL254_A3101 Salmonella enterica subsp. enterica serovar Newport str. SL254 invasion protein InvA YP_002042137.1 3014904 R 423368 CDS YP_002042138.1 194444612 complement(3016986..3018104) 1 NC_011080.1 identified by match to protein family HMM PF02523; match to protein family HMM TIGR02568; invasion protein InvE 3018104 423368003224 SNSL254_A3102 Salmonella enterica subsp. enterica serovar Newport str. SL254 invasion protein InvE YP_002042138.1 3016986 R 423368 CDS YP_002042139.2 448967547 complement(3018101..3019789) 1 NC_011080.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; YscC/HrcC family type III secretion outer membrane protein 3019789 423368003225 SNSL254_A3103 Salmonella enterica subsp. enterica serovar Newport str. SL254 YscC/HrcC family type III secretion outer membrane protein YP_002042139.2 3018101 R 423368 CDS YP_002042140.1 194443997 complement(3019786..3020535) 1 NC_011080.1 identified by match to protein family HMM PF00165; invasion protein 3020535 423368003226 SNSL254_A3104 Salmonella enterica subsp. enterica serovar Newport str. SL254 invasion protein YP_002042140.1 3019786 R 423368 CDS YP_002042141.1 194444966 3020892..3021335 1 NC_011080.1 identified by match to protein family HMM PF04741; cell adherance/invasion protein 3021335 423368003227 SNSL254_A3105 Salmonella enterica subsp. enterica serovar Newport str. SL254 cell adherance/invasion protein YP_002042141.1 3020892 D 423368 CDS YP_002042142.2 448967548 complement(3022821..3023147) 1 NC_011080.1 hypothetical protein 3023147 423368003228 SNSL254_A3106 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042142.2 3022821 R 423368 CDS YP_002042143.1 194445999 3023845..3024126 1 NC_011080.1 identified by match to protein family HMM PF08681; ABC transporter 3024126 423368003229 SNSL254_A3107 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter YP_002042143.1 3023845 D 423368 CDS YP_002042144.1 194446709 3024123..3024650 1 NC_011080.1 identified by match to protein family HMM PF00583; GNAT family acetyltransferase 3024650 423368003230 SNSL254_A3108 Salmonella enterica subsp. enterica serovar Newport str. SL254 GNAT family acetyltransferase YP_002042144.1 3024123 D 423368 CDS YP_002042145.1 194443000 complement(3024723..3025160) 1 NC_011080.1 transposase 3025160 423368003231 SNSL254_A3109 Salmonella enterica subsp. enterica serovar Newport str. SL254 transposase YP_002042145.1 3024723 R 423368 CDS YP_002042146.1 194443656 3025366..3026022 1 NC_011080.1 identified by match to protein family HMM PF00149; serine/threonine-specific protein phosphatase 2 3026022 423368003232 SNSL254_A3110 Salmonella enterica subsp. enterica serovar Newport str. SL254 serine/threonine-specific protein phosphatase 2 YP_002042146.1 3025366 D 423368 CDS YP_002042147.1 194443989 complement(3026194..3026688) 1 NC_011080.1 hypothetical protein 3026688 423368003233 SNSL254_A3111 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042147.1 3026194 R 423368 CDS YP_002042148.1 194444670 complement(3026715..3027383) 1 NC_011080.1 hypothetical protein 3027383 423368003234 SNSL254_A3112 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042148.1 3026715 R 423368 CDS YP_002042149.1 194445586 complement(3028206..3028319) 1 NC_011080.1 identified by glimmer; hypothetical protein 3028319 423368003235 SNSL254_A3113 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042149.1 3028206 R 423368 CDS YP_002042150.1 194445735 3028527..3031094 1 NC_011080.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3031094 mutS 423368003236 mutS Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA mismatch repair protein MutS YP_002042150.1 3028527 D 423368 CDS YP_002042151.1 194445337 complement(3031150..3031530) 1 NC_011080.1 hypothetical protein 3031530 423368003237 SNSL254_A3115 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042151.1 3031150 R 423368 CDS YP_002042152.1 194444689 complement(3031527..3032735) 1 NC_011080.1 identified by match to protein family HMM PF07690; major facilitator family transporter protein 3032735 423368003238 SNSL254_A3116 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator family transporter protein YP_002042152.1 3031527 R 423368 CDS YP_002042153.1 194443789 3032844..3033755 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3033755 423368003239 SNSL254_A3117 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002042153.1 3032844 D 423368 CDS YP_002042154.1 194443173 complement(3033797..3035293) 1 NC_011080.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; hypothetical protein 3035293 423368003240 SNSL254_A3118 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042154.1 3033797 R 423368 CDS YP_002042155.1 194442216 complement(3035290..3036240) 1 NC_011080.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase 3036240 423368003241 SNSL254_A3119 Salmonella enterica subsp. enterica serovar Newport str. SL254 NAD-dependent epimerase/dehydratase YP_002042155.1 3035290 R 423368 CDS YP_002042156.1 194446751 complement(3036280..3037056) 1 NC_011080.1 identified by match to protein family HMM PF01261; hypothetical protein 3037056 423368003242 SNSL254_A3120 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042156.1 3036280 R 423368 CDS YP_002042157.1 194445670 complement(3037061..3037699) 1 NC_011080.1 identified by match to protein family HMM PF00596; aldolase 3037699 423368003243 SNSL254_A3121 Salmonella enterica subsp. enterica serovar Newport str. SL254 aldolase YP_002042157.1 3037061 R 423368 CDS YP_002042158.1 194445270 complement(3037696..3038958) 1 NC_011080.1 identified by match to protein family HMM PF07005; hypothetical protein 3038958 423368003244 SNSL254_A3122 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042158.1 3037696 R 423368 CDS YP_002042159.1 194444748 complement(3038952..3039875) 1 NC_011080.1 identified by match to protein family HMM PF03446; D-beta-hydroxybutyrate dehydrogenase 3039875 423368003245 SNSL254_A3123 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-beta-hydroxybutyrate dehydrogenase YP_002042159.1 3038952 R 423368 CDS YP_002042160.1 194445118 3040072..3040836 1 NC_011080.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 3040836 423368003246 SNSL254_A3124 Salmonella enterica subsp. enterica serovar Newport str. SL254 DeoR family transcriptional regulator YP_002042160.1 3040072 D 423368 CDS YP_002042161.1 194445181 complement(3040855..3041259) 1 NC_011080.1 identified by match to protein family HMM PF01047; transcriptional regulator HosA 3041259 423368003247 SNSL254_A3125 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator HosA YP_002042161.1 3040855 R 423368 CDS YP_002042162.1 194444950 3041430..3042023 1 NC_011080.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; 4-hydroxybenzoate decarboxylase subunit B 3042023 kpdB 423368003248 kpdB Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxybenzoate decarboxylase subunit B YP_002042162.1 3041430 D 423368 CDS YP_002042163.1 194446627 3042023..3043450 1 NC_011080.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 4-hydroxybenzoate decarboxylase subunit C 3043450 kpdC 423368003249 kpdC Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxybenzoate decarboxylase subunit C YP_002042163.1 3042023 D 423368 CDS YP_002042164.1 194445967 3043461..3043697 1 NC_011080.1 4-hydroxybenzoate decarboxylase subunit D 3043697 kpdD 423368003250 kpdD Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxybenzoate decarboxylase subunit D YP_002042164.1 3043461 D 423368 CDS YP_002042165.1 194442500 complement(3043742..3044734) 1 NC_011080.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 3044734 rpoS 423368003251 rpoS Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA polymerase sigma factor RpoS YP_002042165.1 3043742 R 423368 CDS YP_002042166.1 194444146 complement(3044797..3045930) 1 NC_011080.1 outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD 3045930 nlpD 423368003252 nlpD Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein NlpD YP_002042166.1 3044797 R 423368 CDS YP_002042167.1 194445194 complement(3046106..3046732) 1 NC_011080.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 3046732 pcm 423368003253 pcm Salmonella enterica subsp. enterica serovar Newport str. SL254 protein-L-isoaspartate O-methyltransferase YP_002042167.1 3046106 R 423368 CDS YP_002042168.1 194446352 complement(3046726..3047487) 1 NC_011080.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3047487 surE 423368003254 surE Salmonella enterica subsp. enterica serovar Newport str. SL254 stationary phase survival protein SurE YP_002042168.1 3046726 R 423368 CDS YP_002042169.1 194443285 complement(3047468..3048517) 1 NC_011080.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 3048517 truD 423368003255 truD Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA pseudouridine synthase D YP_002042169.1 3047468 R 423368 CDS YP_002042170.1 194444240 complement(3048514..3048993) 1 NC_011080.1 'catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate'; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3048993 ispF 423368003256 ispF Salmonella enterica subsp. enterica serovar Newport str. SL254 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_002042170.1 3048514 R 423368 CDS YP_002042171.1 194444963 complement(3048993..3049703) 1 NC_011080.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3049703 ispD 423368003257 ispD Salmonella enterica subsp. enterica serovar Newport str. SL254 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002042171.1 3048993 R 423368 CDS YP_002042172.1 194444646 complement(3049722..3050033) 1 NC_011080.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 3050033 ftsB 423368003258 ftsB Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein FtsB YP_002042172.1 3049722 R 423368 CDS YP_002042173.2 448967549 complement(3050224..3050580) 1 NC_011080.1 hypothetical protein 3050580 423368003259 SNSL254_A3138 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042173.2 3050224 R 423368 CDS YP_002042174.1 194446323 complement(3050598..3051203) 1 NC_011080.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 3051203 cysC 423368003260 cysC Salmonella enterica subsp. enterica serovar Newport str. SL254 adenylylsulfate kinase YP_002042174.1 3050598 R 423368 CDS YP_002042175.1 194442387 complement(3051190..3052629) 1 NC_011080.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 3052629 cysN 423368003261 cysN Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfate adenylyltransferase subunit 1 YP_002042175.1 3051190 R 423368 CDS YP_002042176.1 194443310 complement(3052639..3053547) 1 NC_011080.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3053547 cysD 423368003262 cysD Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfate adenylyltransferase subunit 2 YP_002042176.1 3052639 R 423368 CDS YP_002042177.1 194443359 3053798..3054844 1 NC_011080.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase 3054844 423368003263 SNSL254_A3142 Salmonella enterica subsp. enterica serovar Newport str. SL254 alkaline phosphatase YP_002042177.1 3053798 D 423368 CDS YP_002042179.1 194445605 complement(3056558..3056851) 1 NC_011080.1 identified by match to protein family HMM PF09707; match to protein family HMM TIGR01873; hypothetical protein 3056851 cas2 423368003266 cas2 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042179.1 3056558 R 423368 CDS YP_002042180.1 194444085 complement(3056854..3057771) 1 NC_011080.1 identified by match to protein family HMM TIGR00287; CRISPR-associated protein Cas1 3057771 cas1 423368003267 cas1 Salmonella enterica subsp. enterica serovar Newport str. SL254 CRISPR-associated protein Cas1 YP_002042180.1 3056854 R 423368 CDS YP_002042181.1 194442456 complement(3057771..3058475) 1 NC_011080.1 identified by match to protein family HMM PF08798; match to protein family HMM TIGR01907; crispr-associated protein Cse3 family 3058475 cse 423368003268 cse Salmonella enterica subsp. enterica serovar Newport str. SL254 crispr-associated protein Cse3 family YP_002042181.1 3057771 R 423368 CDS YP_002042182.1 194442790 complement(3058475..3059200) 1 NC_011080.1 identified by match to protein family HMM PF09708; match to protein family HMM TIGR01868; match to protein family HMM TIGR02593; CRISPR-associated Cas5 family protein 3059200 cas5e 423368003269 cas5e Salmonella enterica subsp. enterica serovar Newport str. SL254 CRISPR-associated Cas5 family protein YP_002042182.1 3058475 R 423368 CDS YP_002042183.1 194445769 complement(3059210..3060268) 1 NC_011080.1 identified by match to protein family HMM PF09344; match to protein family HMM TIGR01869; CRISPR-associated protein Cse4 family 3060268 cse4 423368003270 cse4 Salmonella enterica subsp. enterica serovar Newport str. SL254 CRISPR-associated protein Cse4 family YP_002042183.1 3059210 R 423368 CDS YP_002042184.1 194446761 complement(3060291..3060893) 1 NC_011080.1 identified by match to protein family HMM PF09485; match to protein family HMM TIGR02548; CRISPR-associated protein Cse2 family 3060893 cse2 423368003271 cse2 Salmonella enterica subsp. enterica serovar Newport str. SL254 CRISPR-associated protein Cse2 family YP_002042184.1 3060291 R 423368 CDS YP_002042185.1 194445089 complement(3060910..3062445) 1 NC_011080.1 identified by match to protein family HMM PF09481; match to protein family HMM TIGR02547; CRISPR-associated protein Cse1 family 3062445 cse1 423368003272 cse1 Salmonella enterica subsp. enterica serovar Newport str. SL254 CRISPR-associated protein Cse1 family YP_002042185.1 3060910 R 423368 CDS YP_002042186.1 194442650 3065757..3066839 1 NC_011080.1 Sop effector protein SopD 3066839 423368003274 SNSL254_A3156 Salmonella enterica subsp. enterica serovar Newport str. SL254 Sop effector protein SopD YP_002042186.1 3065757 D 423368 CDS YP_002042187.1 194443262 complement(3067052..3067786) 1 NC_011080.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3067786 cysH 423368003275 cysH Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoadenosine phosphosulfate reductase YP_002042187.1 3067052 R 423368 CDS YP_002042188.1 194444272 complement(3067862..3069574) 1 NC_011080.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3069574 cysI 423368003276 cysI Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfite reductase subunit beta YP_002042188.1 3067862 R 423368 CDS YP_002042189.1 194444907 complement(3069574..3071373) 1 NC_011080.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha 3071373 cysJ 423368003277 cysJ Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfite reductase subunit alpha YP_002042189.1 3069574 R 423368 CDS YP_002042191.1 194445925 3071797..3072159 1 NC_011080.1 identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 3072159 423368003278 SNSL254_A3160 Salmonella enterica subsp. enterica serovar Newport str. SL254 6-pyruvoyl tetrahydrobiopterin synthase YP_002042191.1 3071797 D 423368 CDS YP_002042192.1 194442488 complement(3072247..3073044) 1 NC_011080.1 identified by match to protein family HMM PF00753; beta-lactamase 3073044 423368003279 SNSL254_A3162 Salmonella enterica subsp. enterica serovar Newport str. SL254 beta-lactamase YP_002042192.1 3072247 R 423368 CDS YP_002042193.1 194444787 3073982..3074098 1 NC_011080.1 identified by glimmer; hypothetical protein 3074098 423368003281 SNSL254_A3164 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042193.1 3073982 D 423368 CDS YP_002042194.1 194445622 3074159..3074278 1 NC_011080.1 hypothetical protein 3074278 423368003282 SNSL254_A3165 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042194.1 3074159 D 423368 CDS YP_002042195.1 194443798 complement(3074448..3074594) 1 NC_011080.1 identified by glimmer; hypothetical protein 3074594 423368003283 SNSL254_A3166 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042195.1 3074448 R 423368 CDS YP_002042196.1 194443979 complement(3074625..3075296) 1 NC_011080.1 identified by match to protein family HMM PF04055; hypothetical protein 3075296 423368003284 SNSL254_A3167 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042196.1 3074625 R 423368 CDS YP_002042197.1 194442471 complement(3075432..3076730) 1 NC_011080.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3076730 eno 423368003285 eno Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphopyruvate hydratase YP_002042197.1 3075432 R 423368 CDS YP_002042198.1 194442940 complement(3076813..3078450) 1 NC_011080.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3078450 pyrG 423368003286 pyrG Salmonella enterica subsp. enterica serovar Newport str. SL254 CTP synthetase YP_002042198.1 3076813 R 423368 CDS YP_002042199.1 194446613 complement(3078678..3079478) 1 NC_011080.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3079478 mazG 423368003287 mazG Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoside triphosphate pyrophosphohydrolase YP_002042199.1 3078678 R 423368 CDS YP_002042200.1 194444776 3080087..3080674 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 3080674 423368003288 SNSL254_A3171 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002042200.1 3080087 D 423368 CDS YP_002042201.1 194445583 3080808..3083453 1 NC_011080.1 identified by match to protein family HMM PF00577; fimbrial usher protein 3083453 423368003289 SNSL254_A3172 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial usher protein YP_002042201.1 3080808 D 423368 CDS YP_002042202.1 194443504 3083466..3084239 1 NC_011080.1 identified by match to protein family HMM PF00345; chaperone protein PapD 3084239 423368003290 SNSL254_A3173 Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone protein PapD YP_002042202.1 3083466 D 423368 CDS YP_002042203.1 194444286 3084259..3084765 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 3084765 423368003291 SNSL254_A3174 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002042203.1 3084259 D 423368 CDS YP_002042204.1 194443642 3084780..3085250 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 3085250 423368003292 SNSL254_A3175 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002042204.1 3084780 D 423368 CDS YP_002042205.1 194443246 3085247..3085783 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 3085783 423368003293 SNSL254_A3176 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002042205.1 3085247 D 423368 CDS YP_002042206.1 194446351 3085838..3086869 1 NC_011080.1 hypothetical protein 3086869 423368003294 SNSL254_A3177 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042206.1 3085838 D 423368 CDS YP_002042207.1 194445692 complement(3087219..3089453) 1 NC_011080.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 3089453 relA 423368003295 relA Salmonella enterica subsp. enterica serovar Newport str. SL254 GDP/GTP pyrophosphokinase YP_002042207.1 3087219 R 423368 CDS YP_002042208.1 194445322 complement(3089505..3090800) 1 NC_011080.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 3090800 rumA 423368003296 rumA Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA 5-methyluridine methyltransferase YP_002042208.1 3089505 R 423368 CDS YP_002042209.1 194444640 3090858..3093614 1 NC_011080.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3093614 423368003297 SNSL254_A3180 Salmonella enterica subsp. enterica serovar Newport str. SL254 hybrid sensory histidine kinase BarA YP_002042209.1 3090858 D 423368 CDS YP_002042210.1 194444277 complement(3093658..3094800) 1 NC_011080.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 3094800 423368003298 SNSL254_A3181 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerate kinase YP_002042210.1 3093658 R 423368 CDS YP_002042211.1 194443896 complement(3094878..3096218) 1 NC_011080.1 identified by match to protein family HMM PF01188; match to protein family HMM TIGR03247; glucarate dehydratase 3096218 423368003299 SNSL254_A3182 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucarate dehydratase YP_002042211.1 3094878 R 423368 CDS YP_002042212.1 194443156 complement(3096239..3097579) 1 NC_011080.1 identified by match to protein family HMM PF01188; glucarate dehydratase 3097579 423368003300 SNSL254_A3183 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucarate dehydratase YP_002042212.1 3096239 R 423368 CDS YP_002042213.1 194444468 complement(3097576..3098934) 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00893; glucarate permease 3098934 gudP 423368003301 gudP Salmonella enterica subsp. enterica serovar Newport str. SL254 glucarate permease YP_002042213.1 3097576 R 423368 CDS YP_002042214.1 194445139 complement(3099416..3099865) 1 NC_011080.1 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin 3099865 423368003302 SNSL254_A3186 Salmonella enterica subsp. enterica serovar Newport str. SL254 flavodoxin YP_002042214.1 3099416 R 423368 CDS YP_002042215.1 194443144 complement(3099884..3100666) 1 NC_011080.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 3100666 423368003303 SNSL254_A3187 Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA pseudouridine synthase C YP_002042215.1 3099884 R 423368 CDS YP_002042216.1 194443846 complement(3100666..3100995) 1 NC_011080.1 identified by match to protein family HMM PF04287; hypothetical protein 3100995 423368003304 SNSL254_A3188 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042216.1 3100666 R 423368 CDS YP_002042217.1 194442559 complement(3101606..3102151) 1 NC_011080.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3102151 423368003306 SNSL254_A3190 Salmonella enterica subsp. enterica serovar Newport str. SL254 SecY interacting protein Syd YP_002042217.1 3101606 R 423368 CDS YP_002042218.1 194443165 3102220..3103068 1 NC_011080.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3103068 queF 423368003307 queF Salmonella enterica subsp. enterica serovar Newport str. SL254 7-cyano-7-deazaguanine reductase YP_002042218.1 3102220 D 423368 CDS YP_002042219.1 194445762 3103181..3104545 1 NC_011080.1 identified by match to protein family HMM PF03641; lysine decarboxylase family protein 3104545 423368003308 SNSL254_A3192 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysine decarboxylase family protein YP_002042219.1 3103181 D 423368 CDS YP_002042220.1 194446530 3105110..3106399 1 NC_011080.1 identified by match to protein family HMM TIGR00814; serine transporter family protein 3106399 423368003309 SNSL254_A3193 Salmonella enterica subsp. enterica serovar Newport str. SL254 serine transporter family protein YP_002042220.1 3105110 D 423368 CDS YP_002042221.1 194443885 3106458..3107825 1 NC_011080.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 3107825 423368003310 SNSL254_A3194 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-serine ammonia-lyase YP_002042221.1 3106458 D 423368 CDS YP_002042222.2 448967550 3107935..3108750 1 NC_011080.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3108750 xni 423368003311 xni Salmonella enterica subsp. enterica serovar Newport str. SL254 exonuclease IX YP_002042222.2 3107935 D 423368 CDS YP_002042223.1 194445396 complement(3108842..3109990) 1 NC_011080.1 identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; L-1,2-propanediol oxidoreductase 3109990 fucO 423368003312 fucO Salmonella enterica subsp. enterica serovar Newport str. SL254 L-1,2-propanediol oxidoreductase YP_002042223.1 3108842 R 423368 CDS YP_002042224.1 194445344 complement(3110007..3110654) 1 NC_011080.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 3110654 fucA 423368003313 fucA Salmonella enterica subsp. enterica serovar Newport str. SL254 L-fuculose phosphate aldolase YP_002042224.1 3110007 R 423368 CDS YP_002042225.1 194446728 complement(3110808..3110975) 1 NC_011080.1 hypothetical protein 3110975 423368003314 SNSL254_A3198 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042225.1 3110808 R 423368 CDS YP_002042226.1 194446075 complement(3111062..3111184) 1 NC_011080.1 identified by glimmer; hypothetical protein 3111184 423368003315 SNSL254_A3199 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042226.1 3111062 R 423368 CDS YP_002042227.1 194442798 3111210..3112526 1 NC_011080.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose transporter 3112526 fucP 423368003316 fucP Salmonella enterica subsp. enterica serovar Newport str. SL254 L-fucose transporter YP_002042227.1 3111210 D 423368 CDS YP_002042228.1 194442725 3112558..3114333 1 NC_011080.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3114333 fucI 423368003317 fucI Salmonella enterica subsp. enterica serovar Newport str. SL254 L-fucose isomerase YP_002042228.1 3112558 D 423368 CDS YP_002042229.1 194444145 3114434..3115852 1 NC_011080.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR02628; L-fuculokinase 3115852 fucK 423368003318 fucK Salmonella enterica subsp. enterica serovar Newport str. SL254 L-fuculokinase YP_002042229.1 3114434 D 423368 CDS YP_002042230.1 194443484 3115854..3116276 1 NC_011080.1 identified by match to protein family HMM PF05025; fuscose operon FucU protein 3116276 423368003319 SNSL254_A3203 Salmonella enterica subsp. enterica serovar Newport str. SL254 fuscose operon FucU protein YP_002042230.1 3115854 D 423368 CDS YP_002042231.1 194446461 3116325..3117044 1 NC_011080.1 regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3117044 423368003320 SNSL254_A3204 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator FucR YP_002042231.1 3116325 D 423368 CDS YP_002042232.1 194446481 complement(3117103..3118203) 1 NC_011080.1 RNA 2'-O-ribose methyltransferase 3118203 423368003321 SNSL254_A3205 Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA 2'-O-ribose methyltransferase YP_002042232.1 3117103 R 423368 CDS YP_002042233.1 194446642 complement(3118196..3118591) 1 NC_011080.1 identified by match to protein family HMM PF04241; hypothetical protein 3118591 423368003322 SNSL254_A3206 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042233.1 3118196 R 423368 CDS YP_002042234.1 194444978 complement(3118610..3119527) 1 NC_011080.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3119527 gcvA 423368003323 gcvA Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator GcvA YP_002042234.1 3118610 R 423368 CDS YP_002042235.1 194445644 complement(3119874..3120101) 1 NC_011080.1 identified by match to protein family HMM PF06004; lipoprotein 3120101 423368003325 SNSL254_A3209 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002042235.1 3119874 R 423368 CDS YP_002042236.1 194443337 3120294..3121499 1 NC_011080.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR03392; cysteine sulfinate desulfinase 3121499 csdA 423368003326 csdA Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine sulfinate desulfinase YP_002042236.1 3120294 D 423368 CDS YP_002042237.1 194444454 3121499..3121942 1 NC_011080.1 identified by match to protein family HMM PF02657; match to protein family HMM TIGR03391; cysteine desulfurase, sulfur acceptor subunit CsdE 3121942 csdE 423368003327 csdE Salmonella enterica subsp. enterica serovar Newport str. SL254 cysteine desulfurase, sulfur acceptor subunit CsdE YP_002042237.1 3121499 D 423368 CDS YP_002042238.1 194442364 3122215..3123129 1 NC_011080.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 3123129 rarD 423368003328 rarD Salmonella enterica subsp. enterica serovar Newport str. SL254 RarD protein YP_002042238.1 3122215 D 423368 CDS YP_002042239.1 194442853 complement(3123181..3123987) 1 NC_011080.1 identified by match to protein family HMM PF00899; ThiF family protein 3123987 423368003329 SNSL254_A3213 Salmonella enterica subsp. enterica serovar Newport str. SL254 ThiF family protein YP_002042239.1 3123181 R 423368 CDS YP_008083644.1 513538122 complement(3124097..3125194) 1 NC_011080.1 murein transglycosylase A 3125194 423368003330 SNSL254_A3214 Salmonella enterica subsp. enterica serovar Newport str. SL254 murein transglycosylase A YP_008083644.1 3124097 R 423368 CDS YP_008083645.1 513538123 complement(3125694..3126947) 1 NC_011080.1 N-acetylmuramoyl-L-alanine amidase 3126947 423368003333 SNSL254_A3217 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylmuramoyl-L-alanine amidase YP_008083645.1 3125694 R 423368 CDS YP_002042240.1 194444471 3127180..3128511 1 NC_011080.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3128511 argA 423368003334 argA Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylglutamate synthase YP_002042240.1 3127180 D 423368 CDS YP_002042241.1 194444319 complement(3128614..3130449) 1 NC_011080.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 3130449 recD 423368003335 recD Salmonella enterica subsp. enterica serovar Newport str. SL254 exonuclease V subunit alpha YP_002042241.1 3128614 R 423368 CDS YP_002042242.1 194444795 complement(3130446..3133991) 1 NC_011080.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 3133991 recB 423368003336 recB Salmonella enterica subsp. enterica serovar Newport str. SL254 exonuclease V subunit beta YP_002042242.1 3130446 R 423368 CDS YP_002042243.1 194445318 complement(3133984..3136872) 1 NC_011080.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; protease 3 3136872 423368003337 SNSL254_A3221 Salmonella enterica subsp. enterica serovar Newport str. SL254 protease 3 YP_002042243.1 3133984 R 423368 CDS YP_002042244.1 194442490 complement(3137050..3140421) 1 NC_011080.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 3140421 recC 423368003338 recC Salmonella enterica subsp. enterica serovar Newport str. SL254 exonuclease V subunit gamma YP_002042244.1 3137050 R 423368 CDS YP_002042245.1 194442941 complement(3140437..3140757) 1 NC_011080.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein 3140757 ppdC 423368003339 ppdC Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042245.1 3140437 R 423368 CDS YP_002042246.1 194443438 complement(3140742..3141149) 1 NC_011080.1 'alternate name YgdB, URF2; orf of X03966; 2nd start; ORF_f121'; hypothetical protein 3141149 423368003340 SNSL254_A3224 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042246.1 3140742 R 423368 CDS YP_002042247.1 194443939 complement(3141146..3141670) 1 NC_011080.1 hypothetical protein 3141670 423368003341 SNSL254_A3225 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042247.1 3141146 R 423368 CDS YP_002042248.1 194444559 complement(3141700..3142170) 1 NC_011080.1 identified by match to protein family HMM TIGR02532; hypothetical protein 3142170 423368003342 SNSL254_A3226 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042248.1 3141700 R 423368 CDS YP_002042249.1 194442717 3142180..3142362 1 NC_011080.1 hypothetical protein 3142362 423368003343 SNSL254_A3227 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042249.1 3142180 D 423368 CDS YP_002042250.1 194444087 complement(3142355..3143149) 1 NC_011080.1 'ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived'; thymidylate synthase 3143149 thyA 423368003344 thyA Salmonella enterica subsp. enterica serovar Newport str. SL254 thymidylate synthase YP_002042250.1 3142355 R 423368 CDS YP_002042251.1 194444225 complement(3143156..3144031) 1 NC_011080.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3144031 lgt 423368003345 lgt Salmonella enterica subsp. enterica serovar Newport str. SL254 prolipoprotein diacylglyceryl transferase YP_002042251.1 3143156 R 423368 CDS YP_002042252.1 194445163 complement(3144028..3144186) 1 NC_011080.1 identified by glimmer; hypothetical protein 3144186 423368003346 SNSL254_A3230 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042252.1 3144028 R 423368 CDS YP_002042253.1 194444522 complement(3144247..3146493) 1 NC_011080.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein 3146493 ptsP 423368003347 ptsP Salmonella enterica subsp. enterica serovar Newport str. SL254 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein YP_002042253.1 3144247 R 423368 CDS YP_002042254.1 194446442 complement(3146506..3147036) 1 NC_011080.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3147036 nudH 423368003348 nudH Salmonella enterica subsp. enterica serovar Newport str. SL254 dinucleoside polyphosphate hydrolase YP_002042254.1 3146506 R 423368 CDS YP_002042255.1 194445917 3147719..3148414 1 NC_011080.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3148414 mutH 423368003349 mutH Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA mismatch repair protein YP_002042255.1 3147719 D 423368 CDS YP_002042256.1 194443086 3148596..3149309 1 NC_011080.1 identified by match to protein family HMM PF03741; hypothetical protein 3149309 423368003350 SNSL254_A3234 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042256.1 3148596 D 423368 CDS YP_002042257.1 194442601 3149479..3149697 1 NC_011080.1 identified by match to protein family HMM PF06004; hypothetical protein 3149697 423368003351 SNSL254_A3235 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042257.1 3149479 D 423368 CDS YP_002042258.1 194443055 3149888..3150928 1 NC_011080.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 3150928 tas 423368003352 tas Salmonella enterica subsp. enterica serovar Newport str. SL254 aldo-keto reductase YP_002042258.1 3149888 D 423368 CDS YP_002042259.1 194442580 complement(3151015..3152217) 1 NC_011080.1 identified by match to protein family HMM PF07690; lysophospholipid transporter LplT 3152217 423368003353 SNSL254_A3237 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysophospholipid transporter LplT YP_002042259.1 3151015 R 423368 CDS YP_002042260.1 194445409 complement(3152210..3154369) 1 NC_011080.1 Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 3154369 423368003354 SNSL254_A3238 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YP_002042260.1 3152210 R 423368 CDS YP_002042261.1 194444882 complement(3154838..3154963) 1 NC_011080.1 hypothetical protein 3154963 423368003357 SNSL254_A3242 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042261.1 3154838 R 423368 CDS YP_002042262.1 194443489 3154962..3155990 1 NC_011080.1 controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3155990 423368003358 SNSL254_A3241 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator GalR YP_002042262.1 3154962 D 423368 CDS YP_002042263.1 194445314 3156001..3157023 1 NC_011080.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator AscG 3157023 423368003359 SNSL254_A3243 Salmonella enterica subsp. enterica serovar Newport str. SL254 HTH-type transcriptional regulator AscG YP_002042263.1 3156001 D 423368 CDS YP_002042264.1 194444444 complement(3157033..3158295) 1 NC_011080.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 3158295 lysA 423368003360 lysA Salmonella enterica subsp. enterica serovar Newport str. SL254 diaminopimelate decarboxylase YP_002042264.1 3157033 R 423368 CDS YP_002042265.1 194443091 3158413..3159348 1 NC_011080.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3159348 423368003361 SNSL254_A3245 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator LysR YP_002042265.1 3158413 D 423368 CDS YP_002042266.1 194443338 complement(3159320..3160027) 1 NC_011080.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; racemase 3160027 423368003362 SNSL254_A3246 Salmonella enterica subsp. enterica serovar Newport str. SL254 racemase YP_002042266.1 3159320 R 423368 CDS YP_002042267.1 194442626 complement(3160140..3161558) 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; L-arabinose/proton symport protein 3161558 423368003363 SNSL254_A3247 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-arabinose/proton symport protein YP_002042267.1 3160140 R 423368 CDS YP_002042268.1 194446482 complement(3161912..3162673) 1 NC_011080.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 3162673 kduD 423368003364 kduD Salmonella enterica subsp. enterica serovar Newport str. SL254 2-deoxy-D-gluconate 3-dehydrogenase YP_002042268.1 3161912 R 423368 CDS YP_002042269.1 194446552 complement(3162730..3163566) 1 NC_011080.1 '4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate'; 5-keto-4-deoxyuronate isomerase 3163566 kduI 423368003365 kduI Salmonella enterica subsp. enterica serovar Newport str. SL254 5-keto-4-deoxyuronate isomerase YP_002042269.1 3162730 R 423368 CDS YP_002042270.1 194442633 complement(3163557..3163727) 1 NC_011080.1 identified by glimmer; hypothetical protein 3163727 423368003366 SNSL254_A3250 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042270.1 3163557 R 423368 CDS YP_002042271.1 194446600 complement(3163996..3165174) 1 NC_011080.1 'Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis'; acetyl-CoA acetyltransferase 3165174 423368003367 SNSL254_A3251 Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyl-CoA acetyltransferase YP_002042271.1 3163996 R 423368 CDS YP_002042272.1 194443900 complement(3165297..3166160) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3166160 423368003368 SNSL254_A3252 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002042272.1 3165297 R 423368 CDS YP_002042273.1 194442866 3166264..3166719 1 NC_011080.1 identified by match to protein family HMM PF05232; transmembrane pair domain-containing protein 3166719 423368003369 SNSL254_A3253 Salmonella enterica subsp. enterica serovar Newport str. SL254 transmembrane pair domain-containing protein YP_002042273.1 3166264 D 423368 CDS YP_002042274.1 194445152 3166861..3168090 1 NC_011080.1 inner membrane transport protein YqeG 3168090 423368003370 SNSL254_A3254 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport protein YqeG YP_002042274.1 3166861 D 423368 CDS YP_002042275.1 194444510 complement(3168121..3168393) 1 NC_011080.1 identified by match to protein family HMM PF02583; hypothetical protein 3168393 423368003371 SNSL254_A3255 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042275.1 3168121 R 423368 CDS YP_002042276.1 194446527 3168515..3169339 1 NC_011080.1 membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3169339 423368003372 SNSL254_A3256 Salmonella enterica subsp. enterica serovar Newport str. SL254 nickel/cobalt efflux protein RcnA YP_002042276.1 3168515 D 423368 CDS YP_002042277.1 194445858 complement(3169549..3170307) 1 NC_011080.1 hypothetical protein 3170307 423368003373 SNSL254_A3257 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042277.1 3169549 R 423368 CDS YP_002042278.1 194446799 complement(3170294..3170800) 1 NC_011080.1 identified by match to protein family HMM PF07180; hypothetical protein 3170800 423368003374 SNSL254_A3258 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042278.1 3170294 R 423368 CDS YP_003495231.1 291080900 complement(3170907..3171956) 1 NC_011080.1 hypothetical protein 3171956 423368003375 SNSL254_A3259 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_003495231.1 3170907 R 423368 CDS YP_002042279.1 194444169 complement(3171974..3172717) 1 NC_011080.1 identified by match to protein family HMM PF00345; pili assembly chaperone protein 3172717 423368003376 SNSL254_A3260 Salmonella enterica subsp. enterica serovar Newport str. SL254 pili assembly chaperone protein YP_002042279.1 3171974 R 423368 CDS YP_002042280.1 194442248 complement(3172758..3175247) 1 NC_011080.1 identified by match to protein family HMM PF00577; fimbrial usher protein 3175247 423368003377 SNSL254_A3261 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial usher protein YP_002042280.1 3172758 R 423368 CDS YP_002042281.1 194444979 complement(3175367..3175948) 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial protein 3175948 423368003378 SNSL254_A3262 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial protein YP_002042281.1 3175367 R 423368 CDS YP_002042282.1 194445634 complement(3176114..3176275) 1 NC_011080.1 identified by glimmer; hypothetical protein 3176275 423368003379 SNSL254_A3263 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042282.1 3176114 R 423368 CDS YP_002042283.1 194446773 complement(3176667..3177299) 1 NC_011080.1 hypothetical protein 3177299 423368003380 SNSL254_A3264 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042283.1 3176667 R 423368 CDS YP_002042284.1 194444796 complement(3177346..3177882) 1 NC_011080.1 identified by match to protein family HMM PF06316; outer membrane protein 3177882 423368003381 SNSL254_A3265 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein YP_002042284.1 3177346 R 423368 CDS YP_002042285.1 194443172 complement(3177928..3178113) 1 NC_011080.1 hypothetical protein 3178113 423368003382 SNSL254_A3266 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042285.1 3177928 R 423368 CDS YP_002042286.1 194445814 complement(3178690..3179088) 1 NC_011080.1 stability determinant protein; plasmid maintenance protein 3179088 423368003383 SNSL254_A3267 Salmonella enterica subsp. enterica serovar Newport str. SL254 plasmid maintenance protein YP_002042286.1 3178690 R 423368 CDS YP_002042289.1 194443002 3180024..3180824 1 NC_011080.1 identified by match to protein family HMM PF07313; hypothetical protein 3180824 423368003384 SNSL254_A3270 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042289.1 3180024 D 423368 CDS YP_002042290.1 194442369 complement(3181109..3181861) 1 NC_011080.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; hypothetical protein 3181861 423368003386 SNSL254_A3272 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042290.1 3181109 R 423368 CDS YP_002042291.1 194444023 3182132..3182677 1 NC_011080.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3182677 idi 423368003387 idi Salmonella enterica subsp. enterica serovar Newport str. SL254 isopentenyl-diphosphate delta-isomerase YP_002042291.1 3182132 D 423368 CDS YP_002042292.1 194443381 complement(3182753..3184270) 1 NC_011080.1 'class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1'; lysyl-tRNA synthetase 3184270 lysS 423368003388 lysS Salmonella enterica subsp. enterica serovar Newport str. SL254 lysyl-tRNA synthetase YP_002042292.1 3182753 R 423368 CDS YP_008083646.1 513538124 complement(3184280..3185161) 1 NC_011080.1 peptide chain release factor 2 3185161 prfB 423368003389 prfB Salmonella enterica subsp. enterica serovar Newport str. SL254 peptide chain release factor 2 YP_008083646.1 3184280 R 423368 CDS YP_002042293.1 194444014 complement(3185483..3187216) 1 NC_011080.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 3187216 recJ 423368003390 recJ Salmonella enterica subsp. enterica serovar Newport str. SL254 ssDNA exonuclease RecJ YP_002042293.1 3185483 R 423368 CDS YP_002042294.1 194446553 complement(3187222..3187935) 1 NC_011080.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 3187935 423368003391 SNSL254_A3277 Salmonella enterica subsp. enterica serovar Newport str. SL254 thiol:disulfide interchange protein DsbC YP_002042294.1 3187222 R 423368 CDS YP_002042295.1 194446221 complement(3187959..3188855) 1 NC_011080.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 3188855 xerD 423368003392 xerD Salmonella enterica subsp. enterica serovar Newport str. SL254 site-specific tyrosine recombinase XerD YP_002042295.1 3187959 R 423368 CDS YP_002042296.1 194442635 3188911..3189489 1 NC_011080.1 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic'; flavodoxin FldB 3189489 fldB 423368003393 fldB Salmonella enterica subsp. enterica serovar Newport str. SL254 flavodoxin FldB YP_002042296.1 3188911 D 423368 CDS YP_002042297.1 194446572 complement(3189542..3189955) 1 NC_011080.1 identified by match to protein family HMM PF07254; hypothetical protein 3189955 423368003394 SNSL254_A3280 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042297.1 3189542 R 423368 CDS YP_002042298.1 194443194 complement(3189936..3190202) 1 NC_011080.1 identified by match to protein family HMM PF03937; hypothetical protein 3190202 423368003395 SNSL254_A3282 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042298.1 3189936 R 423368 CDS YP_002042299.1 194442722 3190201..3190437 1 NC_011080.1 hypothetical protein 3190437 423368003396 SNSL254_A3281 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042299.1 3190201 D 423368 CDS YP_002042300.1 194445927 3190452..3191432 1 NC_011080.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; global regulator 3191432 423368003397 SNSL254_A3283 Salmonella enterica subsp. enterica serovar Newport str. SL254 global regulator YP_002042300.1 3190452 D 423368 CDS YP_002042301.1 194442773 complement(3191548..3192207) 1 NC_011080.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin-3 3192207 423368003398 SNSL254_A3284 Salmonella enterica subsp. enterica serovar Newport str. SL254 hemolysin-3 YP_002042301.1 3191548 R 423368 CDS YP_002042302.1 194445012 complement(3192368..3192682) 1 NC_011080.1 identified by match to protein family HMM PF04266; hypothetical protein 3192682 423368003399 SNSL254_A3285 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042302.1 3192368 R 423368 CDS YP_002042303.1 194446388 3192837..3194270 1 NC_011080.1 identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase 3194270 423368003400 SNSL254_A3286 Salmonella enterica subsp. enterica serovar Newport str. SL254 6-phospho-beta-glucosidase YP_002042303.1 3192837 D 423368 CDS YP_002042304.1 194443818 complement(3194318..3195211) 1 NC_011080.1 hypothetical protein 3195211 423368003401 SNSL254_A3287 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042304.1 3194318 R 423368 CDS YP_002042305.1 194445384 complement(3195667..3198540) 1 NC_011080.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3198540 gcvP 423368003402 gcvP Salmonella enterica subsp. enterica serovar Newport str. SL254 glycine dehydrogenase YP_002042305.1 3195667 R 423368 CDS YP_002042306.1 194443961 complement(3198703..3199092) 1 NC_011080.1 'part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor'; glycine cleavage system protein H 3199092 gcvH 423368003403 gcvH Salmonella enterica subsp. enterica serovar Newport str. SL254 glycine cleavage system protein H YP_002042306.1 3198703 R 423368 CDS YP_002042307.1 194443469 complement(3199118..3200212) 1 NC_011080.1 'catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein'; glycine cleavage system aminomethyltransferase T 3200212 gcvT 423368003404 gcvT Salmonella enterica subsp. enterica serovar Newport str. SL254 glycine cleavage system aminomethyltransferase T YP_002042307.1 3199118 R 423368 CDS YP_002042308.1 194443315 complement(3200667..3201869) 1 NC_011080.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; hypothetical protein 3201869 423368003405 SNSL254_A3292 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042308.1 3200667 R 423368 CDS YP_002042310.1 194444322 complement(3201995..3203173) 1 NC_011080.1 'Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone'; 2-octaprenyl-6-methoxyphenyl hydroxylase 3203173 ubiH 423368003406 ubiH Salmonella enterica subsp. enterica serovar Newport str. SL254 2-octaprenyl-6-methoxyphenyl hydroxylase YP_002042310.1 3201995 R 423368 CDS YP_002042311.1 194443636 complement(3203170..3204486) 1 NC_011080.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 3204486 pepP 423368003407 pepP Salmonella enterica subsp. enterica serovar Newport str. SL254 proline aminopeptidase P II YP_002042311.1 3203170 R 423368 CDS YP_002042312.1 194445882 complement(3204512..3205090) 1 NC_011080.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 3205090 423368003408 SNSL254_A3295 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042312.1 3204512 R 423368 CDS YP_002042313.1 194445150 3205257..3205586 1 NC_011080.1 identified by match to protein family HMM PF05164; Z-ring-associated protein 3205586 423368003409 SNSL254_A3296 Salmonella enterica subsp. enterica serovar Newport str. SL254 Z-ring-associated protein YP_002042313.1 3205257 D 423368 CDS YP_002042314.1 194442249 3205832..3206446 1 NC_011080.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 3206446 423368003411 SNSL254_A3298 Salmonella enterica subsp. enterica serovar Newport str. SL254 ligase YP_002042314.1 3205832 D 423368 CDS YP_002042315.1 194446775 complement(3206809..3208041) 1 NC_011080.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3208041 serA 423368003413 serA Salmonella enterica subsp. enterica serovar Newport str. SL254 D-3-phosphoglycerate dehydrogenase YP_002042315.1 3206809 R 423368 CDS YP_008083647.1 513538125 complement(3208308..3208967) 1 NC_011080.1 ribose-5-phosphate isomerase A 3208967 rpiA 423368003414 rpiA Salmonella enterica subsp. enterica serovar Newport str. SL254 ribose-5-phosphate isomerase A YP_008083647.1 3208308 R 423368 CDS YP_002042316.1 194442973 3209121..3210014 1 NC_011080.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3210014 423368003415 SNSL254_A3302 Salmonella enterica subsp. enterica serovar Newport str. SL254 chromosome replication initiation inhibitor protein YP_002042316.1 3209121 D 423368 CDS YP_002042317.1 194445529 3210026..3210232 1 NC_011080.1 hypothetical protein 3210232 423368003416 SNSL254_A3303 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042317.1 3210026 D 423368 CDS YP_002042318.1 194444958 complement(3210280..3211026) 1 NC_011080.1 identified by match to protein family HMM PF04402; hypothetical protein 3211026 423368003417 SNSL254_A3304 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042318.1 3210280 R 423368 CDS YP_002042319.1 194443361 complement(3211120..3211755) 1 NC_011080.1 Involved in the export of arginine; arginine exporter protein 3211755 423368003418 SNSL254_A3305 Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine exporter protein YP_002042319.1 3211120 R 423368 CDS YP_002042321.1 194442396 complement(3211956..3212816) 1 NC_011080.1 participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS 3212816 423368003419 SNSL254_A3307 Salmonella enterica subsp. enterica serovar Newport str. SL254 mechanosensitive channel MscS YP_002042321.1 3211956 R 423368 CDS YP_002042322.1 194444299 complement(3213043..3214122) 1 NC_011080.1 'catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate'; fructose-bisphosphate aldolase 3214122 fbaA 423368003420 fbaA Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose-bisphosphate aldolase YP_002042322.1 3213043 R 423368 CDS YP_002042323.1 194446067 complement(3214225..3215388) 1 NC_011080.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3215388 pgk 423368003421 pgk Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglycerate kinase YP_002042323.1 3214225 R 423368 CDS YP_002042324.1 194443216 complement(3215410..3216456) 1 NC_011080.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3216456 epd 423368003422 epd Salmonella enterica subsp. enterica serovar Newport str. SL254 erythrose 4-phosphate dehydrogenase YP_002042324.1 3215410 R 423368 CDS YP_002042325.1 194444998 3216830..3217255 1 NC_011080.1 identified by match to protein family HMM PF03479; hypothetical protein 3217255 423368003423 SNSL254_A3311 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042325.1 3216830 D 423368 CDS YP_002042326.1 194443495 3217281..3217859 1 NC_011080.1 signal transduction histidine kinase LytS 3217859 423368003424 SNSL254_A3312 Salmonella enterica subsp. enterica serovar Newport str. SL254 signal transduction histidine kinase LytS YP_002042326.1 3217281 D 423368 CDS YP_002042327.1 194444459 3217860..3218567 1 NC_011080.1 identified by match to protein family HMM PF02361; ABC transporter permease 3218567 423368003425 SNSL254_A3313 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002042327.1 3217860 D 423368 CDS YP_002042328.1 194443816 3218555..3219232 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3219232 423368003426 SNSL254_A3314 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002042328.1 3218555 D 423368 CDS YP_002042329.1 194446447 3219226..3219915 1 NC_011080.1 identified by match to protein family HMM PF00005; cobalt ABC transporter ATPase 3219915 423368003427 SNSL254_A3315 Salmonella enterica subsp. enterica serovar Newport str. SL254 cobalt ABC transporter ATPase YP_002042329.1 3219226 D 423368 CDS YP_002042330.1 194442335 complement(3219884..3220600) 1 NC_011080.1 fructose transport system kinase 3220600 frcK 423368003428 frcK Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose transport system kinase YP_002042330.1 3219884 R 423368 CDS YP_002042331.1 194445240 complement(3220597..3221106) 1 NC_011080.1 identified by match to protein family HMM PF05068; DNA-binding transcriptional regulator 3221106 423368003429 SNSL254_A3317 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator YP_002042331.1 3220597 R 423368 CDS YP_002042332.1 194444730 complement(3221320..3222288) 1 NC_011080.1 identified by match to protein family HMM PF03320; match to protein family HMM TIGR00330; fructose-1,6-bisphosphatase II-like protein 3222288 glpX 423368003430 glpX Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose-1,6-bisphosphatase II-like protein YP_002042332.1 3221320 R 423368 CDS YP_002042333.1 194444816 complement(3222288..3223562) 1 NC_011080.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; L-sorbose 1-phosphate reductase 3223562 423368003431 SNSL254_A3319 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-sorbose 1-phosphate reductase YP_002042333.1 3222288 R 423368 CDS YP_002042334.1 194444381 complement(3223586..3224965) 1 NC_011080.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system mannitol-specific transporter subunit IICBA 3224965 423368003432 SNSL254_A3320 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system mannitol-specific transporter subunit IICBA YP_002042334.1 3223586 R 423368 CDS YP_002042335.1 194443223 complement(3224993..3225436) 1 NC_011080.1 'TolM; with CmtA (IIBC), CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein'; mannitol phosphotransferase subunit EIIA 3225436 cmtB 423368003433 cmtB Salmonella enterica subsp. enterica serovar Newport str. SL254 mannitol phosphotransferase subunit EIIA YP_002042335.1 3224993 R 423368 CDS YP_002042336.1 194442732 complement(3225751..3227742) 1 NC_011080.1 'catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase'; transketolase 3227742 tktA 423368003434 tktA Salmonella enterica subsp. enterica serovar Newport str. SL254 transketolase YP_002042336.1 3225751 R 423368 CDS YP_008083648.1 513538126 3228018..3228776 1 NC_011080.1 hypothetical protein 3228776 423368003435 SNSL254_A3323 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083648.1 3228018 D 423368 CDS YP_002042337.1 194443030 complement(3228877..3229797) 1 NC_011080.1 catalyzes the formation of putrescine from agmatine; agmatinase 3229797 speB 423368003436 speB Salmonella enterica subsp. enterica serovar Newport str. SL254 agmatinase YP_002042337.1 3228877 R 423368 CDS YP_002042338.1 194446712 complement(3230002..3230892) 1 NC_011080.1 identified by match to protein family HMM PF00561; hydrolase 3230892 423368003437 SNSL254_A3325 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrolase YP_002042338.1 3230002 R 423368 CDS YP_002042339.1 194446000 complement(3231151..3231645) 1 NC_011080.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; mannitol dehydrogenase 3231645 423368003438 SNSL254_A3326 Salmonella enterica subsp. enterica serovar Newport str. SL254 mannitol dehydrogenase YP_002042339.1 3231151 R 423368 CDS YP_002042340.1 194445675 complement(3231684..3232691) 1 NC_011080.1 identified by match to protein family HMM PF02615; ureidoglycolate dehydrogenase 3232691 423368003439 SNSL254_A3327 Salmonella enterica subsp. enterica serovar Newport str. SL254 ureidoglycolate dehydrogenase YP_002042340.1 3231684 R 423368 CDS YP_002042341.1 194444969 complement(3232705..3233721) 1 NC_011080.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; hypothetical protein 3233721 423368003440 SNSL254_A3328 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042341.1 3232705 R 423368 CDS YP_002042342.1 194443999 complement(3233724..3235196) 1 NC_011080.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 3235196 423368003441 SNSL254_A3329 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-mannonate oxidoreductase YP_002042342.1 3233724 R 423368 CDS YP_002042343.1 194442999 complement(3236428..3237177) 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; Uxu operon transcriptional regulator 3237177 423368003442 SNSL254_A3331 Salmonella enterica subsp. enterica serovar Newport str. SL254 Uxu operon transcriptional regulator YP_002042343.1 3236428 R 423368 CDS YP_002042344.1 194442431 complement(3237382..3238113) 1 NC_011080.1 outer membrane lipoprotein 3238113 423368003443 SNSL254_A3332 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein YP_002042344.1 3237382 R 423368 CDS YP_002042345.2 448967551 complement(3238258..3240234) 1 NC_011080.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 3240234 speA 423368003444 speA Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine decarboxylase YP_002042345.2 3238258 R 423368 CDS YP_002042346.1 194442939 complement(3240243..3240374) 1 NC_011080.1 hypothetical protein 3240374 423368003445 SNSL254_A3334 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042346.1 3240243 R 423368 CDS YP_002042347.1 194443479 3240708..3240875 1 NC_011080.1 hypothetical protein 3240875 423368003446 SNSL254_A3335 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042347.1 3240708 D 423368 CDS YP_002042348.1 194443932 3241024..3242178 1 NC_011080.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3242178 metK 423368003447 metK Salmonella enterica subsp. enterica serovar Newport str. SL254 S-adenosylmethionine synthetase YP_002042348.1 3241024 D 423368 CDS YP_002042349.1 194445073 complement(3242206..3242331) 1 NC_011080.1 identified by glimmer; hypothetical protein 3242331 423368003448 SNSL254_A3337 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042349.1 3242206 R 423368 CDS YP_002042350.1 194445412 3242671..3244065 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; galactose-proton symporter 3244065 galP 423368003449 galP Salmonella enterica subsp. enterica serovar Newport str. SL254 galactose-proton symporter YP_002042350.1 3242671 D 423368 CDS YP_002042351.1 194446306 3244144..3244641 1 NC_011080.1 identified by match to protein family HMM PF03926; hypothetical protein 3244641 sprT 423368003450 sprT Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042351.1 3244144 D 423368 CDS YP_002042352.1 194446681 3244736..3245443 1 NC_011080.1 identified by match to protein family HMM PF04231; endonuclease I 3245443 endA 423368003451 endA Salmonella enterica subsp. enterica serovar Newport str. SL254 endonuclease I YP_002042352.1 3244736 D 423368 CDS YP_002042353.1 194442934 3245472..3246251 1 NC_011080.1 'in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase'; 16S ribosomal RNA methyltransferase RsmE 3246251 423368003452 SNSL254_A3341 Salmonella enterica subsp. enterica serovar Newport str. SL254 16S ribosomal RNA methyltransferase RsmE YP_002042353.1 3245472 D 423368 CDS YP_002042354.1 194443383 3246271..3247218 1 NC_011080.1 'catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione'; glutathione synthetase 3247218 gshB 423368003453 gshB Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione synthetase YP_002042354.1 3246271 D 423368 CDS YP_002042355.1 194442229 3247434..3247997 1 NC_011080.1 identified by match to protein family HMM PF02622; hypothetical protein 3247997 423368003454 SNSL254_A3343 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042355.1 3247434 D 423368 CDS YP_002042356.1 194442861 3247997..3248413 1 NC_011080.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; holliday junction resolvase-like protein 3248413 423368003455 SNSL254_A3344 Salmonella enterica subsp. enterica serovar Newport str. SL254 holliday junction resolvase-like protein YP_002042356.1 3247997 D 423368 CDS YP_002042357.1 194444335 complement(3248460..3249146) 1 NC_011080.1 identified by match to protein family HMM PF09339; regulatory protein IclR 3249146 423368003456 SNSL254_A3345 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein IclR YP_002042357.1 3248460 R 423368 CDS YP_002042358.1 194444916 complement(3249279..3250259) 1 NC_011080.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein 3250259 423368003457 SNSL254_A3346 Salmonella enterica subsp. enterica serovar Newport str. SL254 twitching mobility protein YP_002042358.1 3249279 R 423368 CDS YP_002042359.1 194445431 3250277..3250981 1 NC_011080.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; alanine racemase 3250981 423368003458 SNSL254_A3347 Salmonella enterica subsp. enterica serovar Newport str. SL254 alanine racemase YP_002042359.1 3250277 D 423368 CDS YP_002042360.1 194446177 3251000..3251566 1 NC_011080.1 identified by match to protein family HMM PF02325; hypothetical protein 3251566 423368003459 SNSL254_A3348 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042360.1 3251000 D 423368 CDS YP_002042361.1 194446740 3251563..3251853 1 NC_011080.1 identified by match to protein family HMM PF02594; match to protein family HMM TIGR00251; hypothetical protein 3251853 423368003460 SNSL254_A3349 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042361.1 3251563 D 423368 CDS YP_002042362.1 194442220 3251861..3252454 1 NC_011080.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3252454 rdgB 423368003461 rdgB Salmonella enterica subsp. enterica serovar Newport str. SL254 deoxyribonucleotide triphosphate pyrophosphatase YP_002042362.1 3251861 D 423368 CDS YP_002042363.1 194443015 3252447..3253583 1 NC_011080.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3253583 423368003462 SNSL254_A3351 Salmonella enterica subsp. enterica serovar Newport str. SL254 coproporphyrinogen III oxidase YP_002042363.1 3252447 D 423368 CDS YP_002042364.1 194443490 complement(3253675..3254682) 1 NC_011080.1 identified by match to protein family HMM PF06717; hypothetical protein 3254682 423368003463 SNSL254_A3352 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042364.1 3253675 R 423368 CDS YP_002042365.1 194445696 complement(3254815..3255861) 1 NC_011080.1 'catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis'; L-asparaginase II 3255861 ansB 423368003464 ansB Salmonella enterica subsp. enterica serovar Newport str. SL254 L-asparaginase II YP_002042365.1 3254815 R 423368 CDS YP_002042366.1 194442735 complement(3255880..3256032) 1 NC_011080.1 hypothetical protein 3256032 423368003465 SNSL254_A3354 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042366.1 3255880 R 423368 CDS YP_002042367.1 194442330 complement(3256050..3256769) 1 NC_011080.1 hypothetical protein 3256769 423368003466 SNSL254_A3355 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042367.1 3256050 R 423368 CDS YP_002042368.1 194444121 complement(3256819..3257145) 1 NC_011080.1 identified by match to protein family HMM PF04320; hypothetical protein 3257145 423368003467 SNSL254_A3356 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042368.1 3256819 R 423368 CDS YP_002042369.1 194444176 complement(3257145..3257864) 1 NC_011080.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3257864 trmB 423368003468 trmB Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA (guanine-N(7)-)-methyltransferase YP_002042369.1 3257145 R 423368 CDS YP_002042370.1 194444686 3258019..3259071 1 NC_011080.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; adenine DNA glycosylase 3259071 mutY 423368003469 mutY Salmonella enterica subsp. enterica serovar Newport str. SL254 adenine DNA glycosylase YP_002042370.1 3258019 D 423368 CDS YP_002042371.1 194445281 3259099..3259374 1 NC_011080.1 identified by match to protein family HMM PF04362; hypothetical protein 3259374 423368003470 SNSL254_A3359 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042371.1 3259099 D 423368 CDS YP_002042372.1 194445743 3259487..3260572 1 NC_011080.1 'Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues'; murein transglycosylase C 3260572 mltC 423368003471 mltC Salmonella enterica subsp. enterica serovar Newport str. SL254 murein transglycosylase C YP_002042372.1 3259487 D 423368 CDS YP_002042374.1 194443279 3260789..3262045 1 NC_011080.1 identified by match to protein family HMM PF03825; match to protein family HMM TIGR00889; nucleoside permease NupG 3262045 nupG 423368003472 nupG Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoside permease NupG YP_002042374.1 3260789 D 423368 CDS YP_002042375.1 194445302 complement(3262107..3264242) 1 NC_011080.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase 3264242 speC 423368003473 speC Salmonella enterica subsp. enterica serovar Newport str. SL254 ornithine decarboxylase YP_002042375.1 3262107 R 423368 CDS YP_002042376.1 194443625 3264515..3264628 1 NC_011080.1 identified by glimmer; hypothetical protein 3264628 423368003474 SNSL254_A3364 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042376.1 3264515 D 423368 CDS YP_002042377.1 194444354 3264667..3265374 1 NC_011080.1 identified by match to protein family HMM PF04474; hypothetical protein 3265374 423368003475 SNSL254_A3365 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042377.1 3264667 D 423368 CDS YP_002042378.1 194442702 complement(3266159..3267484) 1 NC_011080.1 identified by match to protein family HMM PF02550; 4-hydroxybutyrate CoA-transferase 3267484 423368003477 SNSL254_A3367 Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxybutyrate CoA-transferase YP_002042378.1 3266159 R 423368 CDS YP_002042379.1 194445678 complement(3267509..3268036) 1 NC_011080.1 identified by match to protein family HMM PF01575; hypothetical protein 3268036 423368003478 SNSL254_A3368 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042379.1 3267509 R 423368 CDS YP_002042380.1 194446251 complement(3268060..3268902) 1 NC_011080.1 identified by match to protein family HMM PF03328; HpcH/HpaI aldolase/citrate lyase family protein 3268902 423368003479 SNSL254_A3369 Salmonella enterica subsp. enterica serovar Newport str. SL254 HpcH/HpaI aldolase/citrate lyase family protein YP_002042380.1 3268060 R 423368 CDS YP_002042381.1 194444613 3268994..3269872 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; hypothetical protein 3269872 423368003480 SNSL254_A3370 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042381.1 3268994 D 423368 CDS YP_002042382.1 194445259 complement(3269920..3271659) 1 NC_011080.1 identified by match to protein family HMM PF00884; arylsulfatase 3271659 423368003481 SNSL254_A3371 Salmonella enterica subsp. enterica serovar Newport str. SL254 arylsulfatase YP_002042382.1 3269920 R 423368 CDS YP_002042383.1 194443597 complement(3271728..3272912) 1 NC_011080.1 identified by match to protein family HMM PF04055; arylsulfatase 3272912 423368003482 SNSL254_A3372 Salmonella enterica subsp. enterica serovar Newport str. SL254 arylsulfatase YP_002042383.1 3271728 R 423368 CDS YP_002042384.1 194444321 3273424..3274107 1 NC_011080.1 identified by match to protein family HMM PF00196; LysR family transcriptional regulator 3274107 423368003483 SNSL254_A3373 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002042384.1 3273424 D 423368 CDS YP_002042385.1 194444249 complement(3274212..3274769) 1 NC_011080.1 hypothetical protein 3274769 423368003484 SNSL254_A3374 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042385.1 3274212 R 423368 CDS YP_002042386.1 194443766 complement(3274747..3276246) 1 NC_011080.1 identified by match to protein family HMM PF00324; transporter 3276246 423368003485 SNSL254_A3375 Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_002042386.1 3274747 R 423368 CDS YP_002042387.1 194444586 complement(3276239..3276382) 1 NC_011080.1 identified by glimmer; hypothetical protein 3276382 423368003486 SNSL254_A3376 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042387.1 3276239 R 423368 CDS YP_002042388.1 194446421 complement(3276455..3276829) 1 NC_011080.1 identified by match to protein family HMM PF05899; hypothetical protein 3276829 423368003487 SNSL254_A3377 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042388.1 3276455 R 423368 CDS YP_002042389.1 194446174 complement(3276844..3278145) 1 NC_011080.1 identified by match to protein family HMM PF01266; tyramine oxidase 3278145 423368003488 SNSL254_A3378 Salmonella enterica subsp. enterica serovar Newport str. SL254 tyramine oxidase YP_002042389.1 3276844 R 423368 CDS YP_002042390.1 194442770 3278307..3279791 1 NC_011080.1 identified by match to protein family HMM PF00171; phenylacetaldehyde dehydrogenase 3279791 423368003489 SNSL254_A3379 Salmonella enterica subsp. enterica serovar Newport str. SL254 phenylacetaldehyde dehydrogenase YP_002042390.1 3278307 D 423368 CDS YP_002042392.2 448967552 complement(3279927..3280310) 1 NC_011080.1 inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein 3280310 iraD 423368003490 iraD Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA replication/recombination/repair protein YP_002042392.2 3279927 R 423368 CDS YP_002042393.1 194445288 complement(3280307..3280792) 1 NC_011080.1 identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hypothetical protein 3280792 423368003491 SNSL254_A3382 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042393.1 3280307 R 423368 CDS YP_002042394.1 194445376 3281100..3281282 1 NC_011080.1 hypothetical protein 3281282 423368003492 SNSL254_A3383 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042394.1 3281100 D 423368 CDS YP_002042395.1 194443821 complement(3281517..3282440) 1 NC_011080.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 3282440 423368003493 SNSL254_A3384 Salmonella enterica subsp. enterica serovar Newport str. SL254 polysaccharide deacetylase YP_002042395.1 3281517 R 423368 CDS YP_002042396.1 194444493 complement(3282479..3283357) 1 NC_011080.1 identified by match to protein family HMM PF00795; amidohydrolase 3283357 423368003494 SNSL254_A3385 Salmonella enterica subsp. enterica serovar Newport str. SL254 amidohydrolase YP_002042396.1 3282479 R 423368 CDS YP_002042397.1 194444620 complement(3283753..3285057) 1 NC_011080.1 identified by match to protein family HMM PF07690; hexuronate transporter 3285057 exuT 423368003495 exuT Salmonella enterica subsp. enterica serovar Newport str. SL254 hexuronate transporter YP_002042397.1 3283753 R 423368 CDS YP_002042398.1 194446167 3285462..3286646 1 NC_011080.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3286646 uxuA 423368003496 uxuA Salmonella enterica subsp. enterica serovar Newport str. SL254 mannonate dehydratase YP_002042398.1 3285462 D 423368 CDS YP_002042399.1 194445895 3286757..3288229 1 NC_011080.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 3288229 423368003497 SNSL254_A3388 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-mannonate oxidoreductase YP_002042399.1 3286757 D 423368 CDS YP_002042400.1 194446286 3288241..3289653 1 NC_011080.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3289653 uxaC 423368003498 uxaC Salmonella enterica subsp. enterica serovar Newport str. SL254 glucuronate isomerase YP_002042400.1 3288241 D 423368 CDS YP_002042401.1 194442901 complement(3289953..3291008) 1 NC_011080.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 3291008 423368003499 SNSL254_A3390 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyl-accepting chemotaxis protein YP_002042401.1 3289953 R 423368 CDS YP_002042403.1 194444281 complement(3291678..3293534) 1 NC_011080.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3293534 423368003500 SNSL254_A3392 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_002042403.1 3291678 R 423368 CDS YP_002042404.1 194445052 3293761..3294627 1 NC_011080.1 YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase 3294627 423368003501 SNSL254_A3393 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione S-transferase YP_002042404.1 3293761 D 423368 CDS YP_002042405.1 194446605 complement(3294695..3295408) 1 NC_011080.1 molybdate ABC transporter substrate-binding protein 3295408 423368003502 SNSL254_A3394 Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdate ABC transporter substrate-binding protein YP_002042405.1 3294695 R 423368 CDS YP_002042406.1 194442766 complement(3295405..3296457) 1 NC_011080.1 identified by match to protein family HMM PF01497; periplasmic binding protein 3296457 423368003503 SNSL254_A3395 Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic binding protein YP_002042406.1 3295405 R 423368 CDS YP_002042407.1 194445615 complement(3296533..3296781) 1 NC_011080.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase 2 accessory protein HypG 3296781 hypC 423368003504 hypC Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 2 accessory protein HypG YP_002042407.1 3296533 R 423368 CDS YP_002042408.1 194446262 complement(3296809..3297150) 1 NC_011080.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 3297150 hypA 423368003505 hypA Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase nickel incorporation protein HybF YP_002042408.1 3296809 R 423368 CDS YP_002042409.1 194443926 complement(3297143..3297631) 1 NC_011080.1 hydrogenase 2-specific chaperone 3297631 423368003506 SNSL254_A3398 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 2-specific chaperone YP_002042409.1 3297143 R 423368 CDS YP_002042410.1 194444578 complement(3297624..3298118) 1 NC_011080.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 3298118 hybD 423368003507 hybD Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 2 maturation endopeptidase YP_002042410.1 3297624 R 423368 CDS YP_002042411.1 194443001 complement(3298118..3299821) 1 NC_011080.1 involved in hydrogen uptake; hydrogenase 2 large subunit 3299821 hybC 423368003508 hybC Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 2 large subunit YP_002042411.1 3298118 R 423368 CDS YP_002042412.1 194443624 complement(3299818..3300996) 1 NC_011080.1 'HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits'; hydrogenase 2 b cytochrome subunit 3300996 hybB 423368003509 hybB Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 2 b cytochrome subunit YP_002042412.1 3299818 R 423368 CDS YP_002042413.1 194446005 complement(3300986..3301972) 1 NC_011080.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 3301972 hybA 423368003510 hybA Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 2 protein HybA YP_002042413.1 3300986 R 423368 CDS YP_002042414.1 194446655 complement(3301975..3303093) 1 NC_011080.1 involved in hydrogen uptake; hydrogenase 2 small subunit 3303093 hyb0 423368003511 hyb0 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrogenase 2 small subunit YP_002042414.1 3301975 R 423368 CDS YP_002042415.1 194444603 complement(3303101..3303286) 1 NC_011080.1 hypothetical protein 3303286 423368003512 SNSL254_A3404 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042415.1 3303101 R 423368 CDS YP_002042416.1 194445611 complement(3303283..3303570) 1 NC_011080.1 hypothetical protein 3303570 423368003513 SNSL254_A3405 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042416.1 3303283 R 423368 CDS YP_002042417.1 194443141 complement(3303655..3305298) 1 NC_011080.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 3305298 423368003514 SNSL254_A3406 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyl-accepting chemotaxis sensory transducer YP_002042417.1 3303655 R 423368 CDS YP_002042418.1 194443683 complement(3305605..3306099) 1 NC_011080.1 identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645; hypothetical protein 3306099 423368003515 SNSL254_A3407 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042418.1 3305605 R 423368 CDS YP_002042419.1 194445897 complement(3306378..3306881) 1 NC_011080.1 hypothetical protein 3306881 423368003516 SNSL254_A3408 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042419.1 3306378 R 423368 CDS YP_002042420.1 194446393 3306985..3307395 1 NC_011080.1 hypothetical protein 3307395 423368003517 SNSL254_A3409 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042420.1 3306985 D 423368 CDS YP_002042421.1 194445277 3307382..3307786 1 NC_011080.1 hypothetical protein 3307786 423368003518 SNSL254_A3410 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042421.1 3307382 D 423368 CDS YP_002042422.1 194445781 3307910..3308794 1 NC_011080.1 identified by match to protein family HMM PF00106; oxidoreductase 3308794 423368003519 SNSL254_A3411 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase YP_002042422.1 3307910 D 423368 CDS YP_002042423.1 194443958 complement(3308907..3309332) 1 NC_011080.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 3309332 exbD 423368003520 exbD Salmonella enterica subsp. enterica serovar Newport str. SL254 biopolymer transport protein ExbD YP_002042423.1 3308907 R 423368 CDS YP_002042424.1 194444554 complement(3309339..3310073) 1 NC_011080.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB 3310073 exbB 423368003521 exbB Salmonella enterica subsp. enterica serovar Newport str. SL254 biopolymer transport protein ExbB YP_002042424.1 3309339 R 423368 CDS YP_002042425.1 194444765 complement(3310066..3310203) 1 NC_011080.1 hypothetical protein 3310203 423368003522 SNSL254_A3414 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042425.1 3310066 R 423368 CDS YP_002042426.1 194444836 3310325..3311512 1 NC_011080.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3311512 metC 423368003523 metC Salmonella enterica subsp. enterica serovar Newport str. SL254 cystathionine beta-lyase YP_002042426.1 3310325 D 423368 CDS YP_002042427.1 194444168 3311652..3312311 1 NC_011080.1 identified by match to protein family HMM PF09335; hypothetical protein 3312311 423368003524 SNSL254_A3416 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042427.1 3311652 D 423368 CDS YP_002042428.1 194442920 complement(3313264..3313380) 1 NC_011080.1 identified by glimmer; hypothetical protein 3313380 423368003526 SNSL254_A3418 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042428.1 3313264 R 423368 CDS YP_002042429.1 194442285 3313467..3314630 1 NC_011080.1 identified by match to protein family HMM PF00465; alcohol dehydrogenase 3314630 423368003527 SNSL254_A3419 Salmonella enterica subsp. enterica serovar Newport str. SL254 alcohol dehydrogenase YP_002042429.1 3313467 D 423368 CDS YP_002042430.1 194446156 3314736..3315563 1 NC_011080.1 'methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate'; 2,5-diketo-D-gluconate reductase A 3315563 dkgA 423368003528 dkgA Salmonella enterica subsp. enterica serovar Newport str. SL254 2,5-diketo-D-gluconate reductase A YP_002042430.1 3314736 D 423368 CDS YP_002042431.1 194444180 3317259..3317714 1 NC_011080.1 identified by match to protein family HMM PF01230; histidine triad (HIT) protein 3317714 423368003530 SNSL254_A3422 Salmonella enterica subsp. enterica serovar Newport str. SL254 histidine triad (HIT) protein YP_002042431.1 3317259 D 423368 CDS YP_002042432.1 194443518 complement(3317872..3318066) 1 NC_011080.1 identified by glimmer; hypothetical protein 3318066 423368003531 SNSL254_A3423 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042432.1 3317872 R 423368 CDS YP_002042433.1 194445866 complement(3318268..3320439) 1 NC_011080.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497; hypothetical protein 3320439 423368003532 SNSL254_A3424 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042433.1 3318268 R 423368 CDS YP_002042434.1 194446478 3320927..3321910 1 NC_011080.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter subunit DctP 3321910 423368003533 SNSL254_A3425 Salmonella enterica subsp. enterica serovar Newport str. SL254 trap dicarboxylate transporter subunit DctP YP_002042434.1 3320927 D 423368 CDS YP_002042435.1 194443527 3321952..3322434 1 NC_011080.1 identified by match to protein family HMM PF04290; tripartite ATP-independent periplasmic 3322434 423368003534 SNSL254_A3426 Salmonella enterica subsp. enterica serovar Newport str. SL254 tripartite ATP-independent periplasmic YP_002042435.1 3321952 D 423368 CDS YP_002042436.1 194444210 3322445..3323752 1 NC_011080.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; hypothetical protein 3323752 423368003535 SNSL254_A3427 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042436.1 3322445 D 423368 CDS YP_002042437.1 194444971 complement(3323797..3325209) 1 NC_011080.1 identified by match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; repressor protein for FtsI 3325209 423368003536 SNSL254_A3428 Salmonella enterica subsp. enterica serovar Newport str. SL254 repressor protein for FtsI YP_002042437.1 3323797 R 423368 CDS YP_002042438.1 194445505 complement(3325283..3326020) 1 NC_011080.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 3326020 423368003537 SNSL254_A3429 Salmonella enterica subsp. enterica serovar Newport str. SL254 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002042438.1 3325283 R 423368 CDS YP_002042439.1 194446354 complement(3326277..3328535) 1 NC_011080.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3328535 parC 423368003538 parC Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA topoisomerase IV subunit A YP_002042439.1 3326277 R 423368 CDS YP_002042440.1 194446792 complement(3328646..3329512) 1 NC_011080.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; transcription activator, effector binding 3329512 423368003539 SNSL254_A3431 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcription activator, effector binding YP_002042440.1 3328646 R 423368 CDS YP_002042441.1 194442987 complement(3329584..3329976) 1 NC_011080.1 identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein 3329976 423368003540 SNSL254_A3432 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042441.1 3329584 R 423368 CDS YP_002042442.1 194445795 3330128..3330787 1 NC_011080.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3330787 423368003541 SNSL254_A3433 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator QseB YP_002042442.1 3330128 D 423368 CDS YP_002042443.1 194446725 3330784..3332133 1 NC_011080.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein QseC 3332133 423368003542 SNSL254_A3434 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor protein QseC YP_002042443.1 3330784 D 423368 CDS YP_002042444.1 194446360 3332127..3332243 1 NC_011080.1 identified by glimmer; hypothetical protein 3332243 423368003543 SNSL254_A3435 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042444.1 3332127 D 423368 CDS YP_002042445.1 194442855 3332240..3332821 1 NC_011080.1 identified by match to protein family HMM PF02525; NADPH-specific quinone oxidoreductase 3332821 423368003544 SNSL254_A3436 Salmonella enterica subsp. enterica serovar Newport str. SL254 NADPH-specific quinone oxidoreductase YP_002042445.1 3332240 D 423368 CDS YP_002042446.1 194442206 3332853..3333167 1 NC_011080.1 identified by match to protein family HMM PF03992; hypothetical protein 3333167 423368003545 SNSL254_A3437 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042446.1 3332853 D 423368 CDS YP_002042447.1 194444124 complement(3333172..3333285) 1 NC_011080.1 identified by glimmer; hypothetical protein 3333285 423368003546 SNSL254_A3438 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042447.1 3333172 R 423368 CDS YP_002042448.1 194443762 complement(3333292..3335184) 1 NC_011080.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3335184 parE 423368003547 parE Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA topoisomerase IV subunit B YP_002042448.1 3333292 R 423368 CDS YP_002042449.1 194446226 complement(3335212..3335793) 1 NC_011080.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA 3335793 yqiA 423368003548 yqiA Salmonella enterica subsp. enterica serovar Newport str. SL254 esterase YqiA YP_002042449.1 3335212 R 423368 CDS YP_002042450.1 194445585 complement(3335793..3336620) 1 NC_011080.1 identified by match to protein family HMM PF00149; match to protein family HMM PF08413; cyclic 3',5'-adenosine monophosphate phosphodiesterase 3336620 icc 423368003549 icc Salmonella enterica subsp. enterica serovar Newport str. SL254 cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_002042450.1 3335793 R 423368 CDS YP_002042451.1 194442667 complement(3336645..3337067) 1 NC_011080.1 identified by match to protein family HMM PF06853; hypothetical protein 3337067 423368003550 SNSL254_A3442 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042451.1 3336645 R 423368 CDS YP_002042452.1 194442306 complement(3337064..3337696) 1 NC_011080.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase 3337696 nudF 423368003551 nudF Salmonella enterica subsp. enterica serovar Newport str. SL254 ADP-ribose pyrophosphatase YP_002042452.1 3337064 R 423368 CDS YP_002042453.1 194446348 3337903..3339372 1 NC_011080.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3339372 tolC 423368003552 tolC Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane channel protein YP_002042453.1 3337903 D 423368 CDS YP_002042454.1 194444980 3339585..3340256 1 NC_011080.1 hypothetical protein 3340256 423368003553 SNSL254_A3445 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042454.1 3339585 D 423368 CDS YP_002042455.1 194442687 3340262..3341425 1 NC_011080.1 identified by match to protein family HMM PF03738; glutathionylspermidine synthase 3341425 423368003554 SNSL254_A3446 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathionylspermidine synthase YP_002042455.1 3340262 D 423368 CDS YP_002042456.1 194443273 complement(3341487..3342275) 1 NC_011080.1 'seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine'; hypothetical protein 3342275 423368003555 SNSL254_A3447 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042456.1 3341487 R 423368 CDS YP_002042457.1 194443682 3342416..3343189 1 NC_011080.1 identified by match to protein family HMM PF02535; zinc transporter ZupT 3343189 423368003556 SNSL254_A3448 Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc transporter ZupT YP_002042457.1 3342416 D 423368 CDS YP_002042458.1 194442395 complement(3343256..3343432) 1 NC_011080.1 hypothetical protein 3343432 423368003557 SNSL254_A3449 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042458.1 3343256 R 423368 CDS YP_002042459.1 194444727 3343832..3345628 1 NC_011080.1 identified by match to protein family HMM PF05935; arylsulfate sulfotransferase 3345628 423368003558 SNSL254_A3450 Salmonella enterica subsp. enterica serovar Newport str. SL254 arylsulfate sulfotransferase YP_002042459.1 3343832 D 423368 CDS YP_002042460.1 194445114 3345648..3346319 1 NC_011080.1 identified by match to protein family HMM PF01323; disulfide isomerase 3346319 423368003559 SNSL254_A3451 Salmonella enterica subsp. enterica serovar Newport str. SL254 disulfide isomerase YP_002042460.1 3345648 D 423368 CDS YP_002042461.1 194445763 3346334..3347011 1 NC_011080.1 disulfide oxidoreductase 3347011 423368003560 SNSL254_A3452 Salmonella enterica subsp. enterica serovar Newport str. SL254 disulfide oxidoreductase YP_002042461.1 3346334 D 423368 CDS YP_002042462.1 194446703 complement(3347182..3347835) 1 NC_011080.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3347835 ribB 423368003561 ribB Salmonella enterica subsp. enterica serovar Newport str. SL254 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002042462.1 3347182 R 423368 CDS YP_002042463.1 194443406 3348272..3348571 1 NC_011080.1 identified by match to protein family HMM PF04380; hypothetical protein 3348571 423368003562 SNSL254_A3455 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042463.1 3348272 D 423368 CDS YP_002042464.1 194443024 complement(3348645..3348854) 1 NC_011080.1 Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS 3348854 423368003563 SNSL254_A3456 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycogen synthesis protein GlgS YP_002042464.1 3348645 R 423368 CDS YP_002042465.1 194445581 3349112..3349732 1 NC_011080.1 identified by match to protein family HMM PF07290; hypothetical protein 3349732 423368003564 SNSL254_A3457 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042465.1 3349112 D 423368 CDS YP_002042466.1 194444047 3349751..3351430 1 NC_011080.1 identified by match to protein family HMM PF01145; hypothetical protein 3351430 423368003565 SNSL254_A3458 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042466.1 3349751 D 423368 CDS YP_002042467.1 194446599 complement(3351889..3353322) 1 NC_011080.1 'catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose'; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3353322 423368003567 SNSL254_A3460 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_002042467.1 3351889 R 423368 CDS YP_002042468.1 194446227 complement(3353370..3356213) 1 NC_011080.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3356213 glnE 423368003568 glnE Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_002042468.1 3353370 R 423368 CDS YP_002042469.1 194446420 complement(3356331..3357632) 1 NC_011080.1 identified by match to protein family HMM PF01928; match to protein family HMM PF05235; adenylate cyclase 3357632 423368003569 SNSL254_A3462 Salmonella enterica subsp. enterica serovar Newport str. SL254 adenylate cyclase YP_002042469.1 3356331 R 423368 CDS YP_002042470.1 194446060 3357874..3358488 1 NC_011080.1 identified by match to protein family HMM PF08239; signal transduction protein 3358488 423368003570 SNSL254_A3463 Salmonella enterica subsp. enterica serovar Newport str. SL254 signal transduction protein YP_002042470.1 3357874 D 423368 CDS YP_002042471.1 194442826 3358551..3359792 1 NC_011080.1 'catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases'; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3359792 cca 423368003571 cca Salmonella enterica subsp. enterica serovar Newport str. SL254 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_002042471.1 3358551 D 423368 CDS YP_002042472.1 194442478 complement(3359897..3360718) 1 NC_011080.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3360718 bacA 423368003572 bacA Salmonella enterica subsp. enterica serovar Newport str. SL254 undecaprenyl pyrophosphate phosphatase YP_002042472.1 3359897 R 423368 CDS YP_002042473.1 194443031 complement(3360816..3361175) 1 NC_011080.1 'catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin'; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3361175 folB 423368003573 folB Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YP_002042473.1 3360816 R 423368 CDS YP_002042474.1 194442267 3361282..3361893 1 NC_011080.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3361893 423368003574 SNSL254_A3467 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol-3-phosphate acyltransferase PlsY YP_002042474.1 3361282 D 423368 CDS YP_002042475.1 194445443 complement(3362143..3363156) 1 NC_011080.1 'in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity'; DNA-binding/iron metalloprotein/AP endonuclease 3363156 gcp 423368003575 gcp Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding/iron metalloprotein/AP endonuclease YP_002042475.1 3362143 R 423368 CDS YP_002042476.1 194444125 3363384..3363599 1 NC_011080.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3363599 rpsU 423368003576 rpsU Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S21 YP_002042476.1 3363384 D 423368 CDS YP_002042477.1 194446779 3363835..3365580 1 NC_011080.1 synthesizes RNA primers at the replication forks; DNA primase 3365580 dnaG 423368003577 dnaG Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA primase YP_002042477.1 3363835 D 423368 CDS YP_002042478.1 194445988 3365730..3367577 1 NC_011080.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3367577 rpoD 423368003578 rpoD Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA polymerase sigma factor RpoD YP_002042478.1 3365730 D 423368 CDS YP_002042479.1 194442343 complement(3367701..3368207) 1 NC_011080.1 identified by match to protein family HMM PF03167; G/U mismatch-specific DNA glycosylase 3368207 423368003579 SNSL254_A3472 Salmonella enterica subsp. enterica serovar Newport str. SL254 G/U mismatch-specific DNA glycosylase YP_002042479.1 3367701 R 423368 CDS YP_002042480.1 194446736 complement(3368488..3369255) 1 NC_011080.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021; siderophore-interacting protein 3369255 423368003581 SNSL254_A3474 Salmonella enterica subsp. enterica serovar Newport str. SL254 siderophore-interacting protein YP_002042480.1 3368488 R 423368 CDS YP_002042481.1 194442774 3369490..3370134 1 NC_011080.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 3370134 423368003582 SNSL254_A3475 Salmonella enterica subsp. enterica serovar Newport str. SL254 PadR family transcriptional regulator YP_002042481.1 3369490 D 423368 CDS YP_002042482.1 194443550 complement(3370131..3371696) 1 NC_011080.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein II 3371696 423368003583 SNSL254_A3476 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyl-accepting chemotaxis protein II YP_002042482.1 3370131 R 423368 CDS YP_002042483.1 194443923 complement(3372084..3373604) 1 NC_011080.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08447; match to protein family HMM TIGR00229; aerotaxis receptor 3373604 423368003584 SNSL254_A3477 Salmonella enterica subsp. enterica serovar Newport str. SL254 aerotaxis receptor YP_002042483.1 3372084 R 423368 CDS YP_002042484.1 194443841 3373631..3373771 1 NC_011080.1 hypothetical protein 3373771 423368003585 SNSL254_A3478 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042484.1 3373631 D 423368 CDS YP_002042485.1 194445628 3374034..3375413 1 NC_011080.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3375413 ygjG 423368003586 ygjG Salmonella enterica subsp. enterica serovar Newport str. SL254 putrescine--2-oxoglutarate aminotransferase YP_002042485.1 3374034 D 423368 CDS YP_002042486.1 194444842 3375584..3377602 1 NC_011080.1 identified by match to protein family HMM PF00724; match to protein family HMM PF07992; FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase family protein 3377602 423368003587 SNSL254_A3480 Salmonella enterica subsp. enterica serovar Newport str. SL254 FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase family protein YP_002042486.1 3375584 D 423368 CDS YP_002042487.1 194446650 complement(3377683..3378819) 1 NC_011080.1 identified by match to protein family HMM PF05175; match to protein family HMM PF08242; methyltransferase family protein 3378819 423368003588 SNSL254_A3481 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyltransferase family protein YP_002042487.1 3377683 R 423368 CDS YP_002042488.1 194442985 3378905..3379402 1 NC_011080.1 identified by match to protein family HMM PF01863; hypothetical protein 3379402 423368003589 SNSL254_A3482 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042488.1 3378905 D 423368 CDS YP_002042489.1 194442486 3379554..3380246 1 NC_011080.1 identified by match to protein family HMM PF02698; SanA protein 3380246 423368003590 SNSL254_A3483 Salmonella enterica subsp. enterica serovar Newport str. SL254 SanA protein YP_002042489.1 3379554 D 423368 CDS YP_002042490.1 194443924 3380335..3381333 1 NC_011080.1 identified by match to protein family HMM PF01408; oxidoreductase YgjR 3381333 423368003591 SNSL254_A3484 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase YgjR YP_002042490.1 3380335 D 423368 CDS YP_002042491.1 194443470 3381604..3382572 1 NC_011080.1 identified by match to protein family HMM PF03741; inner membrane protein alx 3382572 423368003592 SNSL254_A3485 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane protein alx YP_002042491.1 3381604 D 423368 CDS YP_002042492.1 194445575 3382827..3384071 1 NC_011080.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3384071 423368003593 SNSL254_A3486 Salmonella enterica subsp. enterica serovar Newport str. SL254 serine/threonine transporter SstT YP_002042492.1 3382827 D 423368 CDS YP_002042493.1 194445025 3384521..3385183 1 NC_011080.1 identified by match to protein family HMM PF09335; hypothetical protein 3385183 423368003594 SNSL254_A3487 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042493.1 3384521 D 423368 CDS YP_002042494.1 194444251 3385244..3385570 1 NC_011080.1 hypothetical protein 3385570 423368003595 SNSL254_A3488 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042494.1 3385244 D 423368 CDS YP_002042495.1 194443727 3385715..3386083 1 NC_011080.1 identified by match to protein family HMM PF06476; hypothetical protein 3386083 423368003596 SNSL254_A3489 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042495.1 3385715 D 423368 CDS YP_002042496.1 194443598 3386125..3386430 1 NC_011080.1 identified by match to protein family HMM PF05957; hypothetical protein 3386430 423368003597 SNSL254_A3490 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042496.1 3386125 D 423368 CDS YP_002042497.1 194442835 3386433..3386831 1 NC_011080.1 hypothetical protein 3386831 423368003598 SNSL254_A3491 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042497.1 3386433 D 423368 CDS YP_002042498.1 194442314 3386828..3387127 1 NC_011080.1 hypothetical protein 3387127 423368003599 SNSL254_A3492 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042498.1 3386828 D 423368 CDS YP_002042499.1 194446713 3387282..3387767 1 NC_011080.1 identified by match to protein family HMM PF07681; hypothetical protein 3387767 423368003600 SNSL254_A3493 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042499.1 3387282 D 423368 CDS YP_002042500.1 194446218 3387835..3388821 1 NC_011080.1 glutathione S-transferase 3388821 423368003601 SNSL254_A3494 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione S-transferase YP_002042500.1 3387835 D 423368 CDS YP_002042501.1 194445391 3388945..3389310 1 NC_011080.1 identified by match to protein family HMM PF05656; hypothetical protein 3389310 423368003602 SNSL254_A3495 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042501.1 3388945 D 423368 CDS YP_002042502.1 194442694 complement(3389349..3390245) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3390245 423368003603 SNSL254_A3496 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002042502.1 3389349 R 423368 CDS YP_002042503.1 194442338 3391074..3391238 1 NC_011080.1 hypothetical protein 3391238 423368003605 SNSL254_A3499 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042503.1 3391074 D 423368 CDS YP_002042504.1 194444391 complement(3391351..3392661) 1 NC_011080.1 identified by match to protein family HMM PF06354; hypothetical protein 3392661 423368003606 SNSL254_A3500 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042504.1 3391351 R 423368 CDS YP_002042505.1 194445809 complement(3392687..3394126) 1 NC_011080.1 identified by match to protein family HMM TIGR00814; inner membrane transport protein YhaO 3394126 423368003607 SNSL254_A3501 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport protein YhaO YP_002042505.1 3392687 R 423368 CDS YP_002042506.1 194442815 complement(3394334..3395698) 1 NC_011080.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 3395698 423368003608 SNSL254_A3502 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-serine ammonia-lyase YP_002042506.1 3394334 R 423368 CDS YP_002042507.1 194444909 complement(3395768..3398062) 1 NC_011080.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 3398062 pflB 423368003609 pflB Salmonella enterica subsp. enterica serovar Newport str. SL254 formate acetyltransferase YP_002042507.1 3395768 R 423368 CDS YP_002042508.1 194444706 complement(3398096..3399304) 1 NC_011080.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase 3399304 ackA 423368003610 ackA Salmonella enterica subsp. enterica serovar Newport str. SL254 propionate/acetate kinase YP_002042508.1 3398096 R 423368 CDS YP_002042509.1 194443876 complement(3399371..3400702) 1 NC_011080.1 involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC 3400702 tdcC 423368003611 tdcC Salmonella enterica subsp. enterica serovar Newport str. SL254 threonine/serine transporter TdcC YP_002042509.1 3399371 R 423368 CDS YP_002042510.1 194445435 complement(3400723..3401712) 1 NC_011080.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 3401712 tdcB 423368003612 tdcB Salmonella enterica subsp. enterica serovar Newport str. SL254 threonine dehydratase YP_002042510.1 3400723 R 423368 CDS YP_002042511.1 194443351 complement(3401810..3402748) 1 NC_011080.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA 3402748 423368003613 SNSL254_A3507 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator TdcA YP_002042511.1 3401810 R 423368 CDS YP_008083649.1 513538127 complement(3403983..3405128) 1 NC_011080.1 glycerate kinase 3405128 423368003615 SNSL254_A3509 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerate kinase YP_008083649.1 3403983 R 423368 CDS YP_002042512.1 194445548 complement(3405226..3406116) 1 NC_011080.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3406116 garR 423368003616 garR Salmonella enterica subsp. enterica serovar Newport str. SL254 tartronate semialdehyde reductase YP_002042512.1 3405226 R 423368 CDS YP_002042513.1 194446040 complement(3406142..3406912) 1 NC_011080.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 3406912 garL 423368003617 garL Salmonella enterica subsp. enterica serovar Newport str. SL254 alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_002042513.1 3406142 R 423368 CDS YP_002042514.1 194446568 complement(3407028..3407168) 1 NC_011080.1 identified by glimmer; hypothetical protein 3407168 423368003618 SNSL254_A3512 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042514.1 3407028 R 423368 CDS YP_002042515.1 194442476 3407442..3409013 1 NC_011080.1 identified by match to protein family HMM PF04295; match to protein family HMM PF08666; match to protein family HMM TIGR03248; galactarate dehydratase 3409013 garD 423368003619 garD Salmonella enterica subsp. enterica serovar Newport str. SL254 galactarate dehydratase YP_002042515.1 3407442 D 423368 CDS YP_002042516.1 194443006 3409133..3410125 1 NC_011080.1 'catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway'; tagatose-bisphosphate aldolase 3410125 gatY 423368003620 gatY Salmonella enterica subsp. enterica serovar Newport str. SL254 tagatose-bisphosphate aldolase YP_002042516.1 3409133 D 423368 CDS YP_002042517.1 194443375 3410191..3411516 1 NC_011080.1 identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810; D-tagatose-bisphosphate aldolase non-catalytic subunit 3411516 423368003621 SNSL254_A3515 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-tagatose-bisphosphate aldolase non-catalytic subunit YP_002042517.1 3410191 D 423368 CDS YP_002042518.1 194444989 3411531..3411995 1 NC_011080.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 3411995 423368003622 SNSL254_A3516 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system galactitol-specific transporter subunit IIA YP_002042518.1 3411531 D 423368 CDS YP_002042519.1 194445633 3412026..3412310 1 NC_011080.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 3412310 423368003623 SNSL254_A3517 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system galactitol-specific transporter subunit IIB YP_002042519.1 3412026 D 423368 CDS YP_002042520.1 194446386 3412314..3413687 1 NC_011080.1 identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system galactitol-specific transporter subunit IIC 3413687 423368003624 SNSL254_A3518 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system galactitol-specific transporter subunit IIC YP_002042520.1 3412314 D 423368 CDS YP_002042521.1 194445533 3413731..3414774 1 NC_011080.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3414774 423368003625 SNSL254_A3519 Salmonella enterica subsp. enterica serovar Newport str. SL254 galactitol-1-phosphate dehydrogenase YP_002042521.1 3413731 D 423368 CDS YP_002042522.1 194445084 3414885..3415658 1 NC_011080.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; galactitol utilization operon repressor 3415658 423368003626 SNSL254_A3520 Salmonella enterica subsp. enterica serovar Newport str. SL254 galactitol utilization operon repressor YP_002042522.1 3414885 D 423368 CDS YP_002042523.1 194442995 complement(3415816..3416679) 1 NC_011080.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 3416679 423368003627 SNSL254_A3521 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042523.1 3415816 R 423368 CDS YP_002042524.1 194442208 3416743..3418785 1 NC_011080.1 identified by match to protein family HMM PF04348; LppC superfamily 3418785 423368003628 SNSL254_A3522 Salmonella enterica subsp. enterica serovar Newport str. SL254 LppC superfamily YP_002042524.1 3416743 D 423368 CDS YP_002042525.1 194446574 3418743..3419138 1 NC_011080.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 3419138 423368003629 SNSL254_A3523 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042525.1 3418743 D 423368 CDS YP_002042526.1 194446078 3419160..3419750 1 NC_011080.1 Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3419750 diaA 423368003630 diaA Salmonella enterica subsp. enterica serovar Newport str. SL254 DnaA initiator-associating protein DiaA YP_002042526.1 3419160 D 423368 CDS YP_002042527.1 194445022 3419760..3420335 1 NC_011080.1 identified by match to protein family HMM PF04972; hypothetical protein 3420335 423368003631 SNSL254_A3525 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042527.1 3419760 D 423368 CDS YP_002042528.1 194446577 complement(3420402..3421037) 1 NC_011080.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 3421037 423368003632 SNSL254_A3526 Salmonella enterica subsp. enterica serovar Newport str. SL254 NAD dependent epimerase/dehydratase family protein YP_002042528.1 3420402 R 423368 CDS YP_002042529.1 194442389 3421168..3421686 1 NC_011080.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; intracellular peptidase, PfpI family 3421686 423368003633 SNSL254_A3527 Salmonella enterica subsp. enterica serovar Newport str. SL254 intracellular peptidase, PfpI family YP_002042529.1 3421168 D 423368 CDS YP_002042530.1 194443983 complement(3421666..3422109) 1 NC_011080.1 hypothetical protein 3422109 423368003634 SNSL254_A3529 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042530.1 3421666 R 423368 CDS YP_002042531.1 194446550 3422102..3422464 1 NC_011080.1 identified by match to protein family HMM PF01541; GIY-YIG nuclease superfamily protein 3422464 423368003635 SNSL254_A3528 Salmonella enterica subsp. enterica serovar Newport str. SL254 GIY-YIG nuclease superfamily protein YP_002042531.1 3422102 D 423368 CDS YP_002042532.1 194445070 complement(3422451..3422954) 1 NC_011080.1 identified by match to protein family HMM PF00583; acetyltransferase, GNAT family 3422954 423368003636 SNSL254_A3530 Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyltransferase, GNAT family YP_002042532.1 3422451 R 423368 CDS YP_002042533.1 194444377 complement(3422948..3423472) 1 NC_011080.1 identified by match to protein family HMM PF02036; sterol-binding protein 3423472 423368003637 SNSL254_A3531 Salmonella enterica subsp. enterica serovar Newport str. SL254 sterol-binding protein YP_002042533.1 3422948 R 423368 CDS YP_002042534.1 194443421 3423689..3424684 1 NC_011080.1 identified by match to protein family HMM PF01136; peptidase, U32 family 3424684 423368003638 SNSL254_A3532 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidase, U32 family YP_002042534.1 3423689 D 423368 CDS YP_002042535.1 194442783 3424693..3425571 1 NC_011080.1 identified by match to protein family HMM PF01136; peptidase, U32 family 3425571 423368003639 SNSL254_A3533 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidase, U32 family YP_002042535.1 3424693 D 423368 CDS YP_002042536.1 194442399 3425749..3426756 1 NC_011080.1 identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558; hypothetical protein 3426756 423368003640 SNSL254_A3534 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042536.1 3425749 D 423368 CDS YP_002042537.1 194445860 complement(3426847..3428091) 1 NC_011080.1 tryptophan transporter of high affinity; tryptophan permease 3428091 mtr 423368003641 mtr Salmonella enterica subsp. enterica serovar Newport str. SL254 tryptophan permease YP_002042537.1 3426847 R 423368 CDS YP_002042538.1 194446047 complement(3428245..3430134) 1 NC_011080.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD 3430134 deaD 423368003642 deaD Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent RNA helicase DeaD YP_002042538.1 3428245 R 423368 CDS YP_002042539.1 194445393 complement(3430313..3431197) 1 NC_011080.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 3431197 nlpI 423368003643 nlpI Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein NlpI YP_002042539.1 3430313 R 423368 CDS YP_008083650.1 513538128 complement(3431307..3433472) 1 NC_011080.1 polyribonucleotide nucleotidyltransferase 3433472 pnp 423368003644 pnp Salmonella enterica subsp. enterica serovar Newport str. SL254 polyribonucleotide nucleotidyltransferase YP_008083650.1 3431307 R 423368 CDS YP_002042540.1 194443694 complement(3433684..3433953) 1 NC_011080.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3433953 rpsO 423368003646 rpsO Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S15 YP_002042540.1 3433684 R 423368 CDS YP_002042541.1 194444369 complement(3434104..3435048) 1 NC_011080.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3435048 truB 423368003647 truB Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA pseudouridine synthase B YP_002042541.1 3434104 R 423368 CDS YP_002042542.1 194446175 complement(3435048..3435449) 1 NC_011080.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3435449 rbfA 423368003648 rbfA Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosome-binding factor A YP_002042542.1 3435048 R 423368 CDS YP_002042543.1 194446734 complement(3435670..3438348) 1 NC_011080.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3438348 infB 423368003649 infB Salmonella enterica subsp. enterica serovar Newport str. SL254 translation initiation factor IF-2 YP_002042543.1 3435670 R 423368 CDS YP_002042544.1 194442917 complement(3438373..3439875) 1 NC_011080.1 'modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination'; transcription elongation factor NusA 3439875 nusA 423368003650 nusA Salmonella enterica subsp. enterica serovar Newport str. SL254 transcription elongation factor NusA YP_002042544.1 3438373 R 423368 CDS YP_002042545.1 194445687 complement(3439903..3440367) 1 NC_011080.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3440367 423368003651 SNSL254_A3546 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042545.1 3439903 R 423368 CDS YP_002042546.1 194444113 3440747..3440899 1 NC_011080.1 identified by glimmer; hypothetical protein 3440899 423368003653 SNSL254_A3548 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042546.1 3440747 D 423368 CDS YP_002042547.1 194442642 3440983..3442326 1 NC_011080.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3442326 argG 423368003654 argG Salmonella enterica subsp. enterica serovar Newport str. SL254 argininosuccinate synthase YP_002042547.1 3440983 D 423368 CDS YP_002042548.1 194445377 complement(3442412..3443476) 1 NC_011080.1 hypothetical protein 3443476 423368003655 SNSL254_A3550 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042548.1 3442412 R 423368 CDS YP_002042549.1 194446778 complement(3443912..3444244) 1 NC_011080.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 3444244 secG 423368003657 secG Salmonella enterica subsp. enterica serovar Newport str. SL254 preprotein translocase subunit SecG YP_002042549.1 3443912 R 423368 CDS YP_002042550.1 194444789 complement(3444467..3445804) 1 NC_011080.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3445804 glmM 423368003658 glmM Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglucosamine mutase YP_002042550.1 3444467 R 423368 CDS YP_002042551.1 194445468 complement(3445797..3446645) 1 NC_011080.1 'catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate'; dihydropteroate synthase 3446645 folP 423368003659 folP Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydropteroate synthase YP_002042551.1 3445797 R 423368 CDS YP_002042552.1 194442507 complement(3446749..3448692) 1 NC_011080.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease 3448692 hflB 423368003660 hflB Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent metalloprotease YP_002042552.1 3446749 R 423368 CDS YP_002042553.1 194443123 complement(3448787..3449413) 1 NC_011080.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase 3449413 rrmJ 423368003661 rrmJ Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA methyltransferase YP_002042553.1 3448787 R 423368 CDS YP_002042554.1 194446513 3449501..3449833 1 NC_011080.1 RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3449833 423368003662 SNSL254_A3557 Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA-binding protein YhbY YP_002042554.1 3449501 D 423368 CDS YP_002042555.1 194442444 complement(3449989..3450465) 1 NC_011080.1 'necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus'; transcription elongation factor GreA 3450465 greA 423368003663 greA Salmonella enterica subsp. enterica serovar Newport str. SL254 transcription elongation factor GreA YP_002042555.1 3449989 R 423368 CDS YP_002042556.1 194445183 complement(3450519..3450647) 1 NC_011080.1 identified by glimmer; hypothetical protein 3450647 423368003664 SNSL254_A3559 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042556.1 3450519 R 423368 CDS YP_002042557.1 194446146 3450713..3452146 1 NC_011080.1 'penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 3452146 dacB 423368003665 dacB Salmonella enterica subsp. enterica serovar Newport str. SL254 D-alanyl-D-alanine carboxypeptidase YP_002042557.1 3450713 D 423368 CDS YP_002042559.1 194444474 complement(3452277..3453449) 1 NC_011080.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3453449 obgE 423368003666 obgE Salmonella enterica subsp. enterica serovar Newport str. SL254 GTPase ObgE YP_002042559.1 3452277 R 423368 CDS YP_002042560.1 194444511 complement(3453465..3454430) 1 NC_011080.1 identified by match to protein family HMM PF00892; transporter 3454430 423368003667 SNSL254_A3563 Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_002042560.1 3453465 R 423368 CDS YP_002042561.1 194443840 complement(3454560..3454817) 1 NC_011080.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3454817 rpmA 423368003668 rpmA Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L27 YP_002042561.1 3454560 R 423368 CDS YP_002042562.1 194442532 complement(3454837..3455148) 1 NC_011080.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 3455148 rplU 423368003669 rplU Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L21 YP_002042562.1 3454837 R 423368 CDS YP_002042563.2 448967553 3455406..3456377 1 NC_011080.1 identified by match to protein family HMM PF00348; octaprenyl diphosphate synthase 3456377 ispB 423368003670 ispB Salmonella enterica subsp. enterica serovar Newport str. SL254 octaprenyl diphosphate synthase YP_002042563.2 3455406 D 423368 CDS YP_002042564.1 194445871 3456609..3456896 1 NC_011080.1 activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3456896 423368003671 SNSL254_A3567 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator Nlp YP_002042564.1 3456609 D 423368 CDS YP_002042565.1 194446526 complement(3456954..3458213) 1 NC_011080.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3458213 murA 423368003672 murA Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002042565.1 3456954 R 423368 CDS YP_002042566.1 194445146 complement(3458267..3458521) 1 NC_011080.1 identified by match to protein family HMM PF01722; hypothetical protein 3458521 423368003673 SNSL254_A3569 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042566.1 3458267 R 423368 CDS YP_002042567.1 194445872 complement(3458709..3459005) 1 NC_011080.1 anti-sigma factor antagonist 3459005 423368003674 SNSL254_A3570 Salmonella enterica subsp. enterica serovar Newport str. SL254 anti-sigma factor antagonist YP_002042567.1 3458709 R 423368 CDS YP_002042568.1 194443882 complement(3459005..3459640) 1 NC_011080.1 identified by match to protein family HMM PF05494; toluene tolerance protein Ttg2D 3459640 ttg2D 423368003675 ttg2D Salmonella enterica subsp. enterica serovar Newport str. SL254 toluene tolerance protein Ttg2D YP_002042568.1 3459005 R 423368 CDS YP_002042569.1 194445427 complement(3459659..3460210) 1 NC_011080.1 identified by match to protein family HMM PF02470; Mce family protein 3460210 423368003676 SNSL254_A3572 Salmonella enterica subsp. enterica serovar Newport str. SL254 Mce family protein YP_002042569.1 3459659 R 423368 CDS YP_002042570.1 194443328 complement(3460215..3460997) 1 NC_011080.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; toluene ABC transporter permease 3460997 423368003677 SNSL254_A3573 Salmonella enterica subsp. enterica serovar Newport str. SL254 toluene ABC transporter permease YP_002042570.1 3460215 R 423368 CDS YP_002042571.1 194444001 complement(3461005..3461817) 1 NC_011080.1 ATP-binding subunit of a ABC toluene efflux transporter; ABC transporter ATP-binding protein 3461817 423368003678 SNSL254_A3574 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002042571.1 3461005 R 423368 CDS YP_002042572.1 194445686 3462030..3463007 1 NC_011080.1 YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 3463007 423368003679 SNSL254_A3575 Salmonella enterica subsp. enterica serovar Newport str. SL254 calcium/sodium:proton antiporter YP_002042572.1 3462030 D 423368 CDS YP_002042573.1 194446312 3463021..3464007 1 NC_011080.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; D-arabinose 5-phosphate isomerase 3464007 kdsD 423368003680 kdsD Salmonella enterica subsp. enterica serovar Newport str. SL254 D-arabinose 5-phosphate isomerase YP_002042573.1 3463021 D 423368 CDS YP_002042574.1 194444701 3464028..3464594 1 NC_011080.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3464594 kdsC 423368003681 kdsC Salmonella enterica subsp. enterica serovar Newport str. SL254 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_002042574.1 3464028 D 423368 CDS YP_002042575.1 194445232 3464591..3465166 1 NC_011080.1 identified by match to protein family HMM PF06835; hypothetical protein 3465166 423368003682 SNSL254_A3578 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042575.1 3464591 D 423368 CDS YP_002042576.1 194444431 3465135..3465689 1 NC_011080.1 'LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system'; lipopolysaccharide transport periplasmic protein LptA 3465689 lptA 423368003683 lptA Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide transport periplasmic protein LptA YP_002042576.1 3465135 D 423368 CDS YP_002042577.1 194444797 3465696..3466421 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3466421 lptB 423368003684 lptB Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002042577.1 3465696 D 423368 CDS YP_002042578.1 194442910 3466469..3467902 1 NC_011080.1 'sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen'; RNA polymerase factor sigma-54 3467902 rpoN 423368003685 rpoN Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA polymerase factor sigma-54 YP_002042578.1 3466469 D 423368 CDS YP_002042579.1 194443710 3467925..3468212 1 NC_011080.1 YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; sigma(54) modulation protein 3468212 yfiA 423368003686 yfiA Salmonella enterica subsp. enterica serovar Newport str. SL254 sigma(54) modulation protein YP_002042579.1 3467925 D 423368 CDS YP_002042580.1 194443058 3468330..3468821 1 NC_011080.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3468821 ptsN 423368003687 ptsN Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_002042580.1 3468330 D 423368 CDS YP_002042581.1 194442708 3468867..3469721 1 NC_011080.1 identified by match to protein family HMM PF03668; hypothetical protein 3469721 423368003688 SNSL254_A3584 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042581.1 3468867 D 423368 CDS YP_002042582.1 194446143 3469718..3469990 1 NC_011080.1 N-regulated PTS system (Npr); identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase Npr 3469990 ptsO 423368003689 ptsO Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system phosphohistidinoprotein-hexose phosphotransferase Npr YP_002042582.1 3469718 D 423368 CDS YP_002042583.1 194445178 3470239..3470871 1 NC_011080.1 hypothetical protein 3470871 423368003690 SNSL254_A3586 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042583.1 3470239 D 423368 CDS YP_002042584.1 194444547 complement(3470946..3471674) 1 NC_011080.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3471674 mtgA 423368003691 mtgA Salmonella enterica subsp. enterica serovar Newport str. SL254 monofunctional biosynthetic peptidoglycan transglycosylase YP_002042584.1 3470946 R 423368 CDS YP_002042585.1 194444160 complement(3471671..3472324) 1 NC_011080.1 identified by match to protein family HMM PF01965; isoprenoid biosynthesis protein 3472324 elbB 423368003692 elbB Salmonella enterica subsp. enterica serovar Newport str. SL254 isoprenoid biosynthesis protein YP_002042585.1 3471671 R 423368 CDS YP_002042586.1 194442848 complement(3472551..3474887) 1 NC_011080.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 3474887 423368003694 SNSL254_A3590 Salmonella enterica subsp. enterica serovar Newport str. SL254 aerobic respiration control sensor protein ArcB YP_002042586.1 3472551 R 423368 CDS YP_002042587.1 194443195 complement(3474981..3475910) 1 NC_011080.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; hypothetical protein 3475910 423368003695 SNSL254_A3591 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042587.1 3474981 R 423368 CDS YP_008083651.1 513538129 3476582..3481042 1 NC_011080.1 glutamate synthase large subunit 3481042 gltB 423368003696 gltB Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate synthase large subunit YP_008083651.1 3476582 D 423368 CDS YP_002042588.1 194442583 3481052..3482470 1 NC_011080.1 'glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate'; glutamate synthase subunit beta 3482470 gltD 423368003697 gltD Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate synthase subunit beta YP_002042588.1 3481052 D 423368 CDS YP_002042589.1 194444420 3483896..3485149 1 NC_011080.1 identified by match to protein family HMM PF02133; cytosine permease 3485149 codB 423368003700 codB Salmonella enterica subsp. enterica serovar Newport str. SL254 cytosine permease YP_002042589.1 3483896 D 423368 CDS YP_002042590.1 194443802 3485136..3486416 1 NC_011080.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3486416 423368003701 SNSL254_A3597 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytosine deaminase YP_002042590.1 3485136 D 423368 CDS YP_002042591.1 194443112 complement(3486499..3486966) 1 NC_011080.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 3486966 423368003702 SNSL254_A3598 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042591.1 3486499 R 423368 CDS YP_002042592.1 194442620 complement(3486963..3487838) 1 NC_011080.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 3487838 423368003703 SNSL254_A3599 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylmannosamine kinase YP_002042592.1 3486963 R 423368 CDS YP_002042593.1 194446080 complement(3487835..3488524) 1 NC_011080.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 3488524 423368003704 SNSL254_A3600 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylmannosamine-6-phosphate 2-epimerase YP_002042593.1 3487835 R 423368 CDS YP_002042594.1 194445856 complement(3488571..3490061) 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00891; sialic acid transporter 3490061 423368003705 SNSL254_A3601 Salmonella enterica subsp. enterica serovar Newport str. SL254 sialic acid transporter YP_002042594.1 3488571 R 423368 CDS YP_002042595.1 194445365 complement(3490177..3491070) 1 NC_011080.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 3491070 nanA 423368003706 nanA Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylneuraminate lyase YP_002042595.1 3490177 R 423368 CDS YP_002042596.1 194443824 complement(3491205..3491987) 1 NC_011080.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 3491987 423368003707 SNSL254_A3603 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator NanR YP_002042596.1 3491205 R 423368 CDS YP_002042597.1 194445179 complement(3492105..3492605) 1 NC_011080.1 identified by match to protein family HMM PF04386; ClpXP protease specificity-enhancing factor 3492605 sspB 423368003708 sspB Salmonella enterica subsp. enterica serovar Newport str. SL254 ClpXP protease specificity-enhancing factor YP_002042597.1 3492105 R 423368 CDS YP_002042598.1 194444784 complement(3492611..3493249) 1 NC_011080.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3493249 sspA 423368003709 sspA Salmonella enterica subsp. enterica serovar Newport str. SL254 stringent starvation protein A YP_002042598.1 3492611 R 423368 CDS YP_008083652.1 513538130 complement(3493512..3494306) 1 NC_011080.1 hypothetical protein 3494306 423368003710 SNSL254_A3606 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083652.1 3493512 R 423368 CDS YP_002042599.1 194443039 complement(3494464..3494856) 1 NC_011080.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3494856 rpsI 423368003711 rpsI Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S9 YP_002042599.1 3494464 R 423368 CDS YP_002042600.1 194442420 complement(3494872..3495300) 1 NC_011080.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3495300 rplM 423368003712 rplM Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L13 YP_002042600.1 3494872 R 423368 CDS YP_002042601.1 194443955 complement(3495602..3496726) 1 NC_011080.1 identified by match to protein family HMM PF03969; ATPase 3496726 423368003713 SNSL254_A3609 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATPase YP_002042601.1 3495602 R 423368 CDS YP_002042602.1 194443444 3496919..3497317 1 NC_011080.1 identified by match to protein family HMM PF06295; cytochrome d ubiquinol oxidase subunit III 3497317 423368003714 SNSL254_A3610 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome d ubiquinol oxidase subunit III YP_002042602.1 3496919 D 423368 CDS YP_002042603.1 194445588 3497474..3498841 1 NC_011080.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine endoprotease 3498841 423368003715 SNSL254_A3611 Salmonella enterica subsp. enterica serovar Newport str. SL254 serine endoprotease YP_002042603.1 3497474 D 423368 CDS YP_002042604.1 194444622 3498934..3500004 1 NC_011080.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02038; serine endoprotease 3500004 degS 423368003716 degS Salmonella enterica subsp. enterica serovar Newport str. SL254 serine endoprotease YP_002042604.1 3498934 D 423368 CDS YP_002042605.2 448967554 complement(3500038..3500769) 1 NC_011080.1 hypothetical protein 3500769 423368003717 SNSL254_A3613 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042605.2 3500038 R 423368 CDS YP_002042606.1 194445530 complement(3500789..3502090) 1 NC_011080.1 identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta 3502090 423368003718 SNSL254_A3614 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxaloacetate decarboxylase subunit beta YP_002042606.1 3500789 R 423368 CDS YP_002042607.1 194444177 complement(3502103..3503872) 1 NC_011080.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 3503872 oadA 423368003719 oadA Salmonella enterica subsp. enterica serovar Newport str. SL254 oxaloacetate decarboxylase YP_002042607.1 3502103 R 423368 CDS YP_002042608.1 194443431 complement(3503888..3504130) 1 NC_011080.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 3504130 423368003720 SNSL254_A3616 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxaloacetate decarboxylase subunit gamma YP_002042608.1 3503888 R 423368 CDS YP_002042609.1 194443765 complement(3504287..3504904) 1 NC_011080.1 Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta 3504904 423368003721 SNSL254_A3617 Salmonella enterica subsp. enterica serovar Newport str. SL254 L(+)-tartrate dehydratase subunit beta YP_002042609.1 3504287 R 423368 CDS YP_002042610.1 194442404 complement(3504904..3505803) 1 NC_011080.1 Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha 3505803 423368003722 SNSL254_A3618 Salmonella enterica subsp. enterica serovar Newport str. SL254 tartrate dehydratase subunit alpha YP_002042610.1 3504904 R 423368 CDS YP_002042611.1 194446603 complement(3505836..3507104) 1 NC_011080.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00785; anion transporter 3507104 423368003723 SNSL254_A3619 Salmonella enterica subsp. enterica serovar Newport str. SL254 anion transporter YP_002042611.1 3505836 R 423368 CDS YP_002042612.1 194446071 complement(3507315..3507980) 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator 3507980 423368003724 SNSL254_A3620 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002042612.1 3507315 R 423368 CDS YP_002042613.1 194445519 complement(3507967..3508596) 1 NC_011080.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 3508596 423368003725 SNSL254_A3621 Salmonella enterica subsp. enterica serovar Newport str. SL254 GntR family transcriptional regulator YP_002042613.1 3507967 R 423368 CDS YP_002042614.1 194445066 complement(3508716..3509654) 1 NC_011080.1 oxidizes malate to oxaloacetate; malate dehydrogenase 3509654 mdh 423368003726 mdh Salmonella enterica subsp. enterica serovar Newport str. SL254 malate dehydrogenase YP_002042614.1 3508716 R 423368 CDS YP_002042615.1 194444677 3510069..3510539 1 NC_011080.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 3510539 argR 423368003727 argR Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine repressor ArgR YP_002042615.1 3510069 D 423368 CDS YP_002042616.1 194443036 3510904..3511167 1 NC_011080.1 identified by match to protein family HMM PF07338; hypothetical protein 3511167 423368003728 SNSL254_A3624 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042616.1 3510904 D 423368 CDS YP_002042617.1 194442358 3511271..3511537 1 NC_011080.1 identified by match to protein family HMM PF07338; hypothetical protein 3511537 423368003729 SNSL254_A3625 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042617.1 3511271 D 423368 CDS YP_002042618.1 194446672 complement(3511597..3511869) 1 NC_011080.1 hypothetical protein 3511869 423368003730 SNSL254_A3626 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042618.1 3511597 R 423368 CDS YP_002042619.1 194445970 complement(3512041..3514008) 1 NC_011080.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB 3514008 aaeB 423368003731 aaeB Salmonella enterica subsp. enterica serovar Newport str. SL254 p-hydroxybenzoic acid efflux subunit AaeB YP_002042619.1 3512041 R 423368 CDS YP_002042620.1 194445632 complement(3514014..3514946) 1 NC_011080.1 'with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate'; p-hydroxybenzoic acid efflux subunit AaeA 3514946 aaeA 423368003732 aaeA Salmonella enterica subsp. enterica serovar Newport str. SL254 p-hydroxybenzoic acid efflux subunit AaeA YP_002042620.1 3514014 R 423368 CDS YP_002042621.1 194444923 complement(3514954..3515157) 1 NC_011080.1 membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein 3515157 aaeX 423368003733 aaeX Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042621.1 3514954 R 423368 CDS YP_002042622.1 194443452 3515339..3516268 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 3516268 aaeR 423368003734 aaeR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator YP_002042622.1 3515339 D 423368 CDS YP_002042623.1 194445200 complement(3516391..3517836) 1 NC_011080.1 'responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA'; protease TldD 3517836 tldD 423368003735 tldD Salmonella enterica subsp. enterica serovar Newport str. SL254 protease TldD YP_002042623.1 3516391 R 423368 CDS YP_002042624.1 194445802 complement(3517981..3521781) 1 NC_011080.1 identified by match to protein family HMM TIGR02099; hypothetical protein 3521781 423368003736 SNSL254_A3632 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042624.1 3517981 R 423368 CDS YP_002042625.1 194444534 complement(3521888..3523357) 1 NC_011080.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 3523357 cafA 423368003737 cafA Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease G YP_002042625.1 3521888 R 423368 CDS YP_002042626.1 194446465 complement(3523347..3523940) 1 NC_011080.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3523940 maf 423368003738 maf Salmonella enterica subsp. enterica serovar Newport str. SL254 Maf-like protein YP_002042626.1 3523347 R 423368 CDS YP_002042627.1 194445836 complement(3523949..3524440) 1 NC_011080.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 3524440 lytS 423368003739 lytS Salmonella enterica subsp. enterica serovar Newport str. SL254 rod shape-determining protein MreD YP_002042627.1 3523949 R 423368 CDS YP_002042628.1 194443161 complement(3524440..3525492) 1 NC_011080.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3525492 mreC 423368003740 mreC Salmonella enterica subsp. enterica serovar Newport str. SL254 rod shape-determining protein MreC YP_002042628.1 3524440 R 423368 CDS YP_002042629.1 194442543 complement(3525557..3526600) 1 NC_011080.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3526600 mreB 423368003741 mreB Salmonella enterica subsp. enterica serovar Newport str. SL254 rod shape-determining protein MreB YP_002042629.1 3525557 R 423368 CDS YP_002042630.1 194444371 complement(3526908..3528848) 1 NC_011080.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 3528848 423368003742 SNSL254_A3638 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein CsrD YP_002042630.1 3526908 R 423368 CDS YP_002042631.1 194443763 3529052..3530026 1 NC_011080.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823; hypothetical protein 3530026 423368003743 SNSL254_A3639 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042631.1 3529052 D 423368 CDS YP_002042632.1 194445137 3530139..3531143 1 NC_011080.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 3531143 423368003744 SNSL254_A3640 Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfite oxidase subunit YedY YP_002042632.1 3530139 D 423368 CDS YP_002042633.1 194444616 3531144..3531743 1 NC_011080.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 3531743 423368003745 SNSL254_A3641 Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfite oxidase subunit YedZ YP_002042633.1 3531144 D 423368 CDS YP_002042634.1 194442611 3532136..3532606 1 NC_011080.1 'composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism'; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3532606 accB 423368003746 accB Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_002042634.1 3532136 D 423368 CDS YP_002042635.1 194444408 3532617..3533966 1 NC_011080.1 'an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism'; acetyl-CoA carboxylase biotin carboxylase subunit 3533966 accC 423368003747 accC Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyl-CoA carboxylase biotin carboxylase subunit YP_002042635.1 3532617 D 423368 CDS YP_002042636.1 194443250 3534075..3534317 1 NC_011080.1 identified by match to protein family HMM PF06196; hypothetical protein 3534317 423368003748 SNSL254_A3644 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042636.1 3534075 D 423368 CDS YP_002042637.1 194445991 3534307..3535758 1 NC_011080.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3535758 panF 423368003749 panF Salmonella enterica subsp. enterica serovar Newport str. SL254 sodium/panthothenate symporter YP_002042637.1 3534307 D 423368 CDS YP_002042638.1 194446493 3535770..3536651 1 NC_011080.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3536651 prmA 423368003750 prmA Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L11 methyltransferase YP_002042638.1 3535770 D 423368 CDS YP_002042639.1 194444667 3536855..3537013 1 NC_011080.1 identified by glimmer; hypothetical protein 3537013 423368003751 SNSL254_A3647 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042639.1 3536855 D 423368 CDS YP_002042640.1 194443531 3537312..3538277 1 NC_011080.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; tRNA-dihydrouridine synthase B 3538277 dusB 423368003752 dusB Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA-dihydrouridine synthase B YP_002042640.1 3537312 D 423368 CDS YP_002042641.1 194444084 3538303..3538599 1 NC_011080.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3538599 fis 423368003753 fis Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding protein Fis YP_002042641.1 3538303 D 423368 CDS YP_002042642.1 194442303 3538685..3539569 1 NC_011080.1 identified by match to protein family HMM PF01555; methyltransferase 3539569 423368003754 SNSL254_A3650 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyltransferase YP_002042642.1 3538685 D 423368 CDS YP_002042643.1 194442738 3539652..3539816 1 NC_011080.1 hypothetical protein 3539816 423368003755 SNSL254_A3651 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042643.1 3539652 D 423368 CDS YP_002042644.1 194446201 3539967..3542066 1 NC_011080.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254; diguanylate cyclase 3542066 423368003756 SNSL254_A3652 Salmonella enterica subsp. enterica serovar Newport str. SL254 diguanylate cyclase YP_002042644.1 3539967 D 423368 CDS YP_002042645.1 194445141 complement(3542069..3542731) 1 NC_011080.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08361; DNA-binding transcriptional regulator EnvR 3542731 423368003757 SNSL254_A3653 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator EnvR YP_002042645.1 3542069 R 423368 CDS YP_002042646.1 194445928 3542804..3542962 1 NC_011080.1 hypothetical protein 3542962 423368003758 SNSL254_A3654 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042646.1 3542804 D 423368 CDS YP_002042647.1 194446424 3543145..3544302 1 NC_011080.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein E 3544302 423368003759 SNSL254_A3655 Salmonella enterica subsp. enterica serovar Newport str. SL254 acriflavine resistance protein E YP_002042647.1 3543145 D 423368 CDS YP_002042648.1 194443851 3544314..3547427 1 NC_011080.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; AcrB protein 3547427 423368003760 SNSL254_A3656 Salmonella enterica subsp. enterica serovar Newport str. SL254 AcrB protein YP_002042648.1 3544314 D 423368 CDS YP_002042649.1 194444360 3547664..3547885 1 NC_011080.1 lipoprotein 3547885 423368003761 SNSL254_A3657 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002042649.1 3547664 D 423368 CDS YP_002042650.1 194444619 complement(3548325..3548459) 1 NC_011080.1 identified by glimmer; hypothetical protein 3548459 423368003762 SNSL254_A3658 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042650.1 3548325 R 423368 CDS YP_002042651.1 194445893 3554338..3554454 1 NC_011080.1 identified by glimmer; hypothetical protein 3554454 423368003769 SNSL254_A3667 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042651.1 3554338 D 423368 CDS YP_002042652.1 194442622 complement(3555029..3555286) 1 NC_011080.1 identified by match to protein family HMM PF07369; hypothetical protein 3555286 423368003771 SNSL254_A3669 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042652.1 3555029 R 423368 CDS YP_002042653.1 194445984 complement(3555283..3556104) 1 NC_011080.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3556104 aroE 423368003772 aroE Salmonella enterica subsp. enterica serovar Newport str. SL254 shikimate 5-dehydrogenase YP_002042653.1 3555283 R 423368 CDS YP_002042654.1 194442465 complement(3556106..3556678) 1 NC_011080.1 RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; ribosome maturation factor 3556678 423368003773 SNSL254_A3671 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosome maturation factor YP_002042654.1 3556106 R 423368 CDS YP_002042655.1 194445071 complement(3556683..3557225) 1 NC_011080.1 identified by match to protein family HMM PF01396; topoisomerase DNA-binding C4 zinc finger domain-containing protein 3557225 423368003774 SNSL254_A3672 Salmonella enterica subsp. enterica serovar Newport str. SL254 topoisomerase DNA-binding C4 zinc finger domain-containing protein YP_002042655.1 3556683 R 423368 CDS YP_002042656.1 194445557 complement(3557252..3557725) 1 NC_011080.1 identified by match to protein family HMM PF04361; hypothetical protein 3557725 smg 423368003775 smg Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042656.1 3557252 R 423368 CDS YP_002042657.1 194443920 complement(3557697..3558821) 1 NC_011080.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 3558821 423368003776 SNSL254_A3674 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA protecting protein DprA YP_002042657.1 3557697 R 423368 CDS YP_002042658.1 194444564 3558953..3559462 1 NC_011080.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3559462 def 423368003777 def Salmonella enterica subsp. enterica serovar Newport str. SL254 peptide deformylase YP_002042658.1 3558953 D 423368 CDS YP_002042659.1 194442945 3559478..3560425 1 NC_011080.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3560425 fmt 423368003778 fmt Salmonella enterica subsp. enterica serovar Newport str. SL254 methionyl-tRNA formyltransferase YP_002042659.1 3559478 D 423368 CDS YP_002042660.1 194443414 3560477..3561766 1 NC_011080.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase GidB 3561766 sun 423368003779 sun Salmonella enterica subsp. enterica serovar Newport str. SL254 16S rRNA methyltransferase GidB YP_002042660.1 3560477 D 423368 CDS YP_002042661.1 194443582 3561788..3563164 1 NC_011080.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3563164 trkA 423368003780 trkA Salmonella enterica subsp. enterica serovar Newport str. SL254 potassium transporter peripheral membrane protein YP_002042661.1 3561788 D 423368 CDS YP_002042662.1 194446402 3563306..3563719 1 NC_011080.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large conductance mechanosensitive channel protein 3563719 mscL 423368003781 mscL Salmonella enterica subsp. enterica serovar Newport str. SL254 large conductance mechanosensitive channel protein YP_002042662.1 3563306 D 423368 CDS YP_002042663.1 194443147 complement(3563982..3564407) 1 NC_011080.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 3564407 zntR 423368003782 zntR Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc-responsive transcriptional regulator YP_002042663.1 3563982 R 423368 CDS YP_002042664.1 194445976 complement(3564418..3564786) 1 NC_011080.1 identified by match to protein family HMM PF09350; hypothetical protein 3564786 423368003783 SNSL254_A3681 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042664.1 3564418 R 423368 CDS YP_002042665.1 194444425 complement(3564894..3565277) 1 NC_011080.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 3565277 rplQ 423368003784 rplQ Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L17 YP_002042665.1 3564894 R 423368 CDS YP_002042666.1 194442652 complement(3565318..3566307) 1 NC_011080.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 3566307 rpoA 423368003785 rpoA Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-directed RNA polymerase subunit alpha YP_002042666.1 3565318 R 423368 CDS YP_002042667.1 194445278 complement(3566333..3566953) 1 NC_011080.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3566953 rpsD 423368003786 rpsD Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S4 YP_002042667.1 3566333 R 423368 CDS YP_002042668.1 194443473 complement(3566987..3567376) 1 NC_011080.1 'located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3'; 30S ribosomal protein S11 3567376 rpsK 423368003787 rpsK Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S11 YP_002042668.1 3566987 R 423368 CDS YP_002042669.1 194445617 complement(3567393..3567749) 1 NC_011080.1 'located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA'; 30S ribosomal protein S13 3567749 rpsM 423368003788 rpsM Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S13 YP_002042669.1 3567393 R 423368 CDS YP_002042670.1 194446301 complement(3568044..3569375) 1 NC_011080.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 3569375 secY 423368003789 secY Salmonella enterica subsp. enterica serovar Newport str. SL254 preprotein translocase subunit SecY YP_002042670.1 3568044 R 423368 CDS YP_002042671.1 194446752 complement(3569383..3569817) 1 NC_011080.1 late assembly protein; 50S ribosomal protein L15 3569817 rplO 423368003790 rplO Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L15 YP_002042671.1 3569383 R 423368 CDS YP_002042672.1 194444986 complement(3569821..3570000) 1 NC_011080.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 3570000 rpmD 423368003791 rpmD Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L30 YP_002042672.1 3569821 R 423368 CDS YP_002042673.1 194445564 complement(3570004..3570507) 1 NC_011080.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 3570507 rpsE 423368003792 rpsE Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S5 YP_002042673.1 3570004 R 423368 CDS YP_002042674.1 194444050 complement(3570522..3570875) 1 NC_011080.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 3570875 rplR 423368003793 rplR Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L18 YP_002042674.1 3570522 R 423368 CDS YP_002042675.1 194442440 complement(3570885..3571418) 1 NC_011080.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 3571418 rplF 423368003794 rplF Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L6 YP_002042675.1 3570885 R 423368 CDS YP_002042676.1 194442970 complement(3571431..3571823) 1 NC_011080.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 3571823 rpsH 423368003795 rpsH Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S8 YP_002042676.1 3571431 R 423368 CDS YP_002042677.1 194446084 complement(3571857..3572162) 1 NC_011080.1 'located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif'; 30S ribosomal protein S14 3572162 rpsN 423368003796 rpsN Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S14 YP_002042677.1 3571857 R 423368 CDS YP_002042678.1 194446540 complement(3572177..3572716) 1 NC_011080.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 3572716 rplE 423368003797 rplE Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L5 YP_002042678.1 3572177 R 423368 CDS YP_002042679.1 194445033 complement(3572731..3573045) 1 NC_011080.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 3573045 rplX 423368003798 rplX Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L24 YP_002042679.1 3572731 R 423368 CDS YP_002042680.1 194443435 complement(3573056..3573427) 1 NC_011080.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 3573427 rplN 423368003799 rplN Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L14 YP_002042680.1 3573056 R 423368 CDS YP_002042681.1 194442455 complement(3573591..3573845) 1 NC_011080.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 3573845 rpsQ 423368003800 rpsQ Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S17 YP_002042681.1 3573591 R 423368 CDS YP_002042682.1 194445979 complement(3573845..3574036) 1 NC_011080.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 3574036 rpmC 423368003801 rpmC Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L29 YP_002042682.1 3573845 R 423368 CDS YP_002042683.1 194445561 complement(3574036..3574446) 1 NC_011080.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 3574446 rplP 423368003802 rplP Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L16 YP_002042683.1 3574036 R 423368 CDS YP_002042684.1 194445051 complement(3574459..3575160) 1 NC_011080.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 3575160 rpsC 423368003803 rpsC Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S3 YP_002042684.1 3574459 R 423368 CDS YP_002042685.1 194444021 complement(3575178..3575510) 1 NC_011080.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 3575510 rplV 423368003804 rplV Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L22 YP_002042685.1 3575178 R 423368 CDS YP_002042686.1 194443377 complement(3575525..3575803) 1 NC_011080.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 3575803 rpsS 423368003805 rpsS Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S19 YP_002042686.1 3575525 R 423368 CDS YP_002042687.1 194443046 complement(3575820..3576641) 1 NC_011080.1 'one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation'; 50S ribosomal protein L2 3576641 rplB 423368003806 rplB Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L2 YP_002042687.1 3575820 R 423368 CDS YP_002042688.1 194446477 complement(3576659..3576961) 1 NC_011080.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 3576961 rplW 423368003807 rplW Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L23 YP_002042688.1 3576659 R 423368 CDS YP_002042689.1 194445826 complement(3576958..3577563) 1 NC_011080.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3577563 rplD 423368003808 rplD Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L4 YP_002042689.1 3576958 R 423368 CDS YP_002042690.1 194445166 complement(3577574..3578203) 1 NC_011080.1 'binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin'; 50S ribosomal protein L3 3578203 rplC 423368003809 rplC Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L3 YP_002042690.1 3577574 R 423368 CDS YP_002042691.1 194443646 complement(3578236..3578547) 1 NC_011080.1 identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 3578547 rpsJ 423368003810 rpsJ Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S10 YP_002042691.1 3578236 R 423368 CDS YP_002042692.1 194446607 3578927..3579394 1 NC_011080.1 identified by match to protein family HMM PF01478; leader peptidase HopD 3579394 423368003811 SNSL254_A3711 Salmonella enterica subsp. enterica serovar Newport str. SL254 leader peptidase HopD YP_002042692.1 3578927 D 423368 CDS YP_002042693.1 194444695 complement(3579391..3579867) 1 NC_011080.1 iron storage protein; bacterioferritin 3579867 bfr 423368003812 bfr Salmonella enterica subsp. enterica serovar Newport str. SL254 bacterioferritin YP_002042693.1 3579391 R 423368 CDS YP_002042694.1 194445688 complement(3579940..3580134) 1 NC_011080.1 identified by match to protein family HMM PF04324; bacterioferritin-associated ferredoxin 3580134 bfd 423368003813 bfd Salmonella enterica subsp. enterica serovar Newport str. SL254 bacterioferritin-associated ferredoxin YP_002042694.1 3579940 R 423368 CDS YP_002042695.1 194443035 complement(3580319..3581503) 1 NC_011080.1 'EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu'; elongation factor Tu 3581503 tuf2 423368003814 tuf2 Salmonella enterica subsp. enterica serovar Newport str. SL254 elongation factor Tu YP_002042695.1 3580319 R 423368 CDS YP_002042696.1 194444018 complement(3581575..3583689) 1 NC_011080.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3583689 fusA 423368003815 fusA Salmonella enterica subsp. enterica serovar Newport str. SL254 elongation factor G YP_002042696.1 3581575 R 423368 CDS YP_002042697.1 194443663 complement(3583786..3584256) 1 NC_011080.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3584256 rpsG 423368003816 rpsG Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S7 YP_002042697.1 3583786 R 423368 CDS YP_002042698.1 194445616 complement(3584352..3584726) 1 NC_011080.1 'interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance'; 30S ribosomal protein S12 3584726 rpsL 423368003817 rpsL Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S12 YP_002042698.1 3584352 R 423368 CDS YP_002042699.1 194446561 complement(3584852..3585139) 1 NC_011080.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB 3585139 dsrH 423368003818 dsrH Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfur transfer complex subunit TusB YP_002042699.1 3584852 R 423368 CDS YP_002042700.1 194446565 complement(3585147..3585503) 1 NC_011080.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 3585503 tusC 423368003819 tusC Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfur relay protein TusC YP_002042700.1 3585147 R 423368 CDS YP_002042701.1 194445215 complement(3585503..3585889) 1 NC_011080.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 3585889 tusD 423368003820 tusD Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfur transfer complex subunit TusD YP_002042701.1 3585503 R 423368 CDS YP_002042702.1 194444709 complement(3585889..3586611) 1 NC_011080.1 identified by match to protein family HMM PF08348; hypothetical protein 3586611 423368003821 SNSL254_A3722 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042702.1 3585889 R 423368 CDS YP_002042703.1 194444363 complement(3586888..3587706) 1 NC_011080.1 rotamase; FKBP-type peptidylprolyl isomerase 3587706 423368003822 SNSL254_A3723 Salmonella enterica subsp. enterica serovar Newport str. SL254 FKBP-type peptidylprolyl isomerase YP_002042703.1 3586888 R 423368 CDS YP_002042704.1 194443387 3587926..3588144 1 NC_011080.1 identified by match to protein family HMM PF04102; hypothetical protein 3588144 423368003823 SNSL254_A3724 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042704.1 3587926 D 423368 CDS YP_002042705.1 194443265 complement(3588333..3588923) 1 NC_011080.1 rotamase; FKBP-type peptidylprolyl isomerase 3588923 slyD 423368003824 slyD Salmonella enterica subsp. enterica serovar Newport str. SL254 FKBP-type peptidylprolyl isomerase YP_002042705.1 3588333 R 423368 CDS YP_002042706.1 194442645 complement(3589018..3589218) 1 NC_011080.1 identified by match to protein family HMM PF09526; match to protein family HMM TIGR02443; hypothetical protein 3589218 423368003825 SNSL254_A3726 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042706.1 3589018 R 423368 CDS YP_002042707.1 194446232 complement(3589229..3591034) 1 NC_011080.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 3591034 kefB 423368003826 kefB Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione-regulated potassium-efflux system protein KefB YP_002042707.1 3589229 R 423368 CDS YP_002042708.1 194446178 complement(3591034..3591585) 1 NC_011080.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 3591585 kefG 423368003827 kefG Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione-regulated potassium-efflux system ancillary protein KefG YP_002042708.1 3591034 R 423368 CDS YP_002042709.1 194445355 3591851..3593758 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3593758 423368003828 SNSL254_A3729 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002042709.1 3591851 D 423368 CDS YP_002042710.1 194442755 3593921..3594142 1 NC_011080.1 ABC transporter ATPase 3594142 423368003829 SNSL254_A3730 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATPase YP_002042710.1 3593921 D 423368 CDS YP_002042711.1 194445704 complement(3594144..3594455) 1 NC_011080.1 identified by match to protein family HMM PF08803; hypothetical protein 3594455 423368003830 SNSL254_A3731 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042711.1 3594144 R 423368 CDS YP_002042712.1 194446378 complement(3594503..3594628) 1 NC_011080.1 identified by glimmer; hypothetical protein 3594628 423368003831 SNSL254_A3732 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042712.1 3594503 R 423368 CDS YP_002042713.1 194443559 3594697..3595719 1 NC_011080.1 identified by match to protein family HMM PF00561; hydrolase 3595719 423368003832 SNSL254_A3733 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrolase YP_002042713.1 3594697 D 423368 CDS YP_002042714.1 194444054 3595716..3595934 1 NC_011080.1 identified by match to protein family HMM PF06794; hypothetical protein 3595934 423368003833 SNSL254_A3734 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042714.1 3595716 D 423368 CDS YP_002042715.1 194442585 3595986..3596855 1 NC_011080.1 identified by match to protein family HMM PF00485; phosphoribulokinase/uridine kinase family protein 3596855 423368003834 SNSL254_A3735 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoribulokinase/uridine kinase family protein YP_002042715.1 3595986 D 423368 CDS YP_002042716.1 194443052 complement(3596951..3597370) 1 NC_011080.1 identified by match to protein family HMM PF02566; hypothetical protein 3597370 423368003835 SNSL254_A3736 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042716.1 3596951 R 423368 CDS YP_002042717.1 194446186 3597663..3598295 1 NC_011080.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3598295 crp 423368003836 crp Salmonella enterica subsp. enterica serovar Newport str. SL254 cAMP-regulatory protein YP_002042717.1 3597663 D 423368 CDS YP_002042718.1 194446669 3598344..3600431 1 NC_011080.1 identified by match to protein family HMM PF05976; match to protein family HMM TIGR01667; hypothetical protein 3600431 423368003837 SNSL254_A3738 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042718.1 3598344 D 423368 CDS YP_002042719.1 194445123 complement(3600474..3601691) 1 NC_011080.1 'DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate'; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase 3601691 argD 423368003838 argD Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase YP_002042719.1 3600474 R 423368 CDS YP_002042720.1 194442681 complement(3601777..3602340) 1 NC_011080.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 3602340 pabA 423368003839 pabA Salmonella enterica subsp. enterica serovar Newport str. SL254 para-aminobenzoate synthase component II YP_002042720.1 3601777 R 423368 CDS YP_002042721.1 194444306 complement(3602372..3602974) 1 NC_011080.1 identified by match to protein family HMM PF02661; cell filamentation protein Fic 3602974 fic 423368003840 fic Salmonella enterica subsp. enterica serovar Newport str. SL254 cell filamentation protein Fic YP_002042721.1 3602372 R 423368 CDS YP_002042722.1 194443689 complement(3603240..3603812) 1 NC_011080.1 identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase A 3603812 ppiA 423368003841 ppiA Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidyl-prolyl cis-trans isomerase A YP_002042722.1 3603240 R 423368 CDS YP_002042723.1 194446244 3604089..3605270 1 NC_011080.1 identified by match to protein family HMM PF07690; hypothetical protein 3605270 tsgA 423368003842 tsgA Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042723.1 3604089 D 423368 CDS YP_002042725.1 194443307 3605532..3608075 1 NC_011080.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H], large subunit 3608075 nirB 423368003843 nirB Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrite reductase [NAD(P)H], large subunit YP_002042725.1 3605532 D 423368 CDS YP_002042726.1 194443633 3608072..3608398 1 NC_011080.1 'involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations'; nitrite reductase small subunit 3608398 nirD 423368003844 nirD Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrite reductase small subunit YP_002042726.1 3608072 D 423368 CDS YP_002042727.1 194442688 complement(3608395..3608553) 1 NC_011080.1 hypothetical protein 3608553 423368003845 SNSL254_A3747 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042727.1 3608395 R 423368 CDS YP_002042728.1 194443284 3608663..3609472 1 NC_011080.1 member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3609472 nirC 423368003846 nirC Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrite transporter NirC YP_002042728.1 3608663 D 423368 CDS YP_002042729.1 194445230 3609484..3610857 1 NC_011080.1 'multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin'; siroheme synthase 3610857 cysG 423368003847 cysG Salmonella enterica subsp. enterica serovar Newport str. SL254 siroheme synthase YP_002042729.1 3609484 D 423368 CDS YP_002042730.1 194446719 3617213..3617383 1 NC_011080.1 outer membrane lipoprotein 3617383 423368003850 SNSL254_A3752 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein YP_002042730.1 3617213 D 423368 CDS YP_002042731.1 194443252 complement(3617528..3618532) 1 NC_011080.1 'catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; tryptophanyl-tRNA synthetase 3618532 trpS 423368003851 trpS Salmonella enterica subsp. enterica serovar Newport str. SL254 tryptophanyl-tRNA synthetase YP_002042731.1 3617528 R 423368 CDS YP_002042732.1 194445749 complement(3618525..3619283) 1 NC_011080.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 3619283 gph 423368003852 gph Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglycolate phosphatase YP_002042732.1 3618525 R 423368 CDS YP_002042733.1 194443940 complement(3619276..3619953) 1 NC_011080.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 3619953 rpe 423368003853 rpe Salmonella enterica subsp. enterica serovar Newport str. SL254 ribulose-phosphate 3-epimerase YP_002042733.1 3619276 R 423368 CDS YP_002042734.1 194442408 complement(3619971..3620807) 1 NC_011080.1 identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; DNA adenine methylase 3620807 dam 423368003854 dam Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA adenine methylase YP_002042734.1 3619971 R 423368 CDS YP_002042735.1 194446812 complement(3620988..3622265) 1 NC_011080.1 identified by match to protein family HMM PF05036; hypothetical protein 3622265 423368003855 SNSL254_A3757 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042735.1 3620988 R 423368 CDS YP_002042736.1 194444819 complement(3622363..3623451) 1 NC_011080.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3623451 aroB 423368003856 aroB Salmonella enterica subsp. enterica serovar Newport str. SL254 3-dehydroquinate synthase YP_002042736.1 3622363 R 423368 CDS YP_002042737.1 194443078 complement(3623508..3624029) 1 NC_011080.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 3624029 aroK 423368003857 aroK Salmonella enterica subsp. enterica serovar Newport str. SL254 shikimate kinase I YP_002042737.1 3623508 R 423368 CDS YP_002042738.1 194446460 complement(3624494..3625774) 1 NC_011080.1 outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; outer membrane porin HofQ 3625774 hofQ 423368003858 hofQ Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane porin HofQ YP_002042738.1 3624494 R 423368 CDS YP_002042739.1 194443604 complement(3625647..3626048) 1 NC_011080.1 hypothetical protein 3626048 423368003859 SNSL254_A3761 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042739.1 3625647 R 423368 CDS YP_002042740.1 194445129 complement(3626038..3626511) 1 NC_011080.1 hypothetical protein 3626511 423368003860 SNSL254_A3762 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042740.1 3626038 R 423368 CDS YP_002042741.1 194442845 complement(3626495..3627034) 1 NC_011080.1 identified by match to protein family HMM PF05137; PilN family protein 3627034 423368003861 SNSL254_A3763 Salmonella enterica subsp. enterica serovar Newport str. SL254 PilN family protein YP_002042741.1 3626495 R 423368 CDS YP_002042742.1 194442319 complement(3627034..3627813) 1 NC_011080.1 HofM protein 3627813 423368003862 SNSL254_A3764 Salmonella enterica subsp. enterica serovar Newport str. SL254 HofM protein YP_002042742.1 3627034 R 423368 CDS YP_002042743.1 194446165 3627934..3630486 1 NC_011080.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3630486 mrcA 423368003863 mrcA Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidoglycan synthetase YP_002042743.1 3627934 D 423368 CDS YP_002042744.1 194443297 complement(3630582..3631178) 1 NC_011080.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3631178 nudE 423368003864 nudE Salmonella enterica subsp. enterica serovar Newport str. SL254 ADP-ribose diphosphatase NudE YP_002042744.1 3630582 R 423368 CDS YP_002042745.1 194445640 3631468..3633600 1 NC_011080.1 identified by match to protein family HMM PF07095; intracellular growth attenuator protein IgaA 3633600 423368003865 SNSL254_A3767 Salmonella enterica subsp. enterica serovar Newport str. SL254 intracellular growth attenuator protein IgaA YP_002042745.1 3631468 D 423368 CDS YP_002042746.1 194444840 3633665..3634333 1 NC_011080.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD hydrolase, IA family 3634333 423368003866 SNSL254_A3768 Salmonella enterica subsp. enterica serovar Newport str. SL254 HAD hydrolase, IA family YP_002042746.1 3633665 D 423368 CDS YP_002042747.1 194444069 3634344..3634745 1 NC_011080.1 identified by match to protein family HMM PF01479; ribosome-associated heat shock protein Hsp15 3634745 hslR 423368003867 hslR Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosome-associated heat shock protein Hsp15 YP_002042747.1 3634344 D 423368 CDS YP_002042748.1 194443703 3634764..3635648 1 NC_011080.1 'becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers'; Hsp33-like chaperonin 3635648 hslO 423368003868 hslO Salmonella enterica subsp. enterica serovar Newport str. SL254 Hsp33-like chaperonin YP_002042748.1 3634764 D 423368 CDS YP_002042749.1 194442915 complement(3635759..3637468) 1 NC_011080.1 hypothetical protein 3637468 423368003869 SNSL254_A3771 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042749.1 3635759 R 423368 CDS YP_002042750.1 194442693 complement(3637660..3637794) 1 NC_011080.1 identified by glimmer; hypothetical protein 3637794 423368003870 SNSL254_A3772 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042750.1 3637660 R 423368 CDS YP_002042751.1 194444707 3637848..3639467 1 NC_011080.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3639467 pckA 423368003871 pckA Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoenolpyruvate carboxykinase YP_002042751.1 3637848 D 423368 CDS YP_002042752.1 194446263 complement(3639542..3640885) 1 NC_011080.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 3640885 envZ 423368003872 envZ Salmonella enterica subsp. enterica serovar Newport str. SL254 osmolarity sensor protein YP_002042752.1 3639542 R 423368 CDS YP_002042753.1 194444248 complement(3640891..3641610) 1 NC_011080.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 3641610 ompR 423368003873 ompR Salmonella enterica subsp. enterica serovar Newport str. SL254 osmolarity response regulator YP_002042753.1 3640891 R 423368 CDS YP_002042754.1 194443767 3641836..3642309 1 NC_011080.1 'necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus'; transcription elongation factor GreB 3642309 greB 423368003874 greB Salmonella enterica subsp. enterica serovar Newport str. SL254 transcription elongation factor GreB YP_002042754.1 3641836 D 423368 CDS YP_002042755.1 194442760 3642408..3644738 1 NC_011080.1 identified by match to protein family HMM PF00575; match to protein family HMM PF09371; transcriptional accessory protein 3644738 423368003875 SNSL254_A3777 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional accessory protein YP_002042755.1 3642408 D 423368 CDS YP_002042756.1 194444236 3645175..3645402 1 NC_011080.1 identified by match to protein family HMM PF04023; ferrous iron transport protein A 3645402 feoA 423368003876 feoA Salmonella enterica subsp. enterica serovar Newport str. SL254 ferrous iron transport protein A YP_002042756.1 3645175 D 423368 CDS YP_002042757.1 194445799 3645421..3647739 1 NC_011080.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3647739 feoB 423368003877 feoB Salmonella enterica subsp. enterica serovar Newport str. SL254 ferrous iron transport protein B YP_002042757.1 3645421 D 423368 CDS YP_002042758.1 194445055 3647752..3647988 1 NC_011080.1 identified by match to protein family HMM PF09012; hypothetical protein 3647988 423368003878 SNSL254_A3780 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042758.1 3647752 D 423368 CDS YP_002042760.1 194443491 3648223..3649137 1 NC_011080.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 3649137 423368003879 SNSL254_A3782 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042760.1 3648223 D 423368 CDS YP_002042761.1 194446498 complement(3649173..3649943) 1 NC_011080.1 Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH 3649943 423368003880 SNSL254_A3783 Salmonella enterica subsp. enterica serovar Newport str. SL254 carboxylesterase BioH YP_002042761.1 3649173 R 423368 CDS YP_002042762.1 194445852 3649981..3650664 1 NC_011080.1 involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3650664 423368003881 SNSL254_A3784 Salmonella enterica subsp. enterica serovar Newport str. SL254 gluconate periplasmic binding protein YP_002042762.1 3649981 D 423368 CDS YP_002042763.1 194445195 3650723..3651298 1 NC_011080.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 3651298 gntY 423368003882 gntY Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA uptake protein YP_002042763.1 3650723 D 423368 CDS YP_002042764.1 194444552 3651675..3652991 1 NC_011080.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; high-affinity gluconate transporter 3652991 gntT 423368003883 gntT Salmonella enterica subsp. enterica serovar Newport str. SL254 high-affinity gluconate transporter YP_002042764.1 3651675 D 423368 CDS YP_002042765.1 194443621 complement(3653110..3655188) 1 NC_011080.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 3655188 malQ 423368003884 malQ Salmonella enterica subsp. enterica serovar Newport str. SL254 4-alpha-glucanotransferase YP_002042765.1 3653110 R 423368 CDS YP_002042766.1 194445591 complement(3655198..3657591) 1 NC_011080.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; maltodextrin phosphorylase 3657591 423368003885 SNSL254_A3788 Salmonella enterica subsp. enterica serovar Newport str. SL254 maltodextrin phosphorylase YP_002042766.1 3655198 R 423368 CDS YP_002042767.1 194442412 3658186..3660891 1 NC_011080.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3660891 malT 423368003886 malT Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator MalT YP_002042767.1 3658186 D 423368 CDS YP_002042768.1 194446805 complement(3660960..3661718) 1 NC_011080.1 'represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism'; DNA-binding transcriptional repressor GlpR 3661718 423368003887 SNSL254_A3790 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional repressor GlpR YP_002042768.1 3660960 R 423368 CDS YP_002042769.1 194442211 complement(3661812..3662636) 1 NC_011080.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG 3662636 423368003888 SNSL254_A3791 Salmonella enterica subsp. enterica serovar Newport str. SL254 intramembrane serine protease GlpG YP_002042769.1 3661812 R 423368 CDS YP_002042770.1 194442955 complement(3662718..3663044) 1 NC_011080.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 3663044 glpE 423368003889 glpE Salmonella enterica subsp. enterica serovar Newport str. SL254 thiosulfate sulfurtransferase YP_002042770.1 3662718 R 423368 CDS YP_002042771.1 194443576 3663243..3664751 1 NC_011080.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3664751 glpD 423368003890 glpD Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol-3-phosphate dehydrogenase YP_002042771.1 3663243 D 423368 CDS YP_002042772.1 194442572 complement(3664798..3665343) 1 NC_011080.1 hypothetical protein 3665343 423368003891 SNSL254_A3794 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042772.1 3664798 R 423368 CDS YP_002042773.1 194445497 complement(3665353..3666813) 1 NC_011080.1 phosphate-binding protein 3666813 423368003892 SNSL254_A3795 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphate-binding protein YP_002042773.1 3665353 R 423368 CDS YP_002042774.1 194443812 complement(3667007..3668116) 1 NC_011080.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 3668116 gldA 423368003893 gldA Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol dehydrogenase YP_002042774.1 3667007 R 423368 CDS YP_002042775.1 194445088 3668454..3669788 1 NC_011080.1 identified by match to protein family HMM PF07690; major facilitator superfamily protein 3669788 423368003894 SNSL254_A3797 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator superfamily protein YP_002042775.1 3668454 D 423368 CDS YP_002042776.1 194443398 3669785..3671500 1 NC_011080.1 identified by match to protein family HMM PF00920; dihydroxy-acid dehydratase 3671500 423368003895 SNSL254_A3798 Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydroxy-acid dehydratase YP_002042776.1 3669785 D 423368 CDS YP_002042777.1 194444914 3671544..3672449 1 NC_011080.1 identified by match to protein family HMM PF00701; dihydrodipicolinate synthetase 3672449 423368003896 SNSL254_A3799 Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydrodipicolinate synthetase YP_002042777.1 3671544 D 423368 CDS YP_002042778.1 194443368 complement(3672493..3673248) 1 NC_011080.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator 3673248 423368003897 SNSL254_A3800 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002042778.1 3672493 R 423368 CDS YP_002042779.1 194446217 complement(3673426..3675873) 1 NC_011080.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase 3675873 423368003898 SNSL254_A3801 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycogen phosphorylase YP_002042779.1 3673426 R 423368 CDS YP_002042780.1 194445559 complement(3675893..3677326) 1 NC_011080.1 'catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose'; glycogen synthase 3677326 glgA 423368003899 glgA Salmonella enterica subsp. enterica serovar Newport str. SL254 glycogen synthase YP_002042780.1 3675893 R 423368 CDS YP_002042781.1 194442621 complement(3677326..3678621) 1 NC_011080.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3678621 glgC 423368003900 glgC Salmonella enterica subsp. enterica serovar Newport str. SL254 glucose-1-phosphate adenylyltransferase YP_002042781.1 3677326 R 423368 CDS YP_002042782.1 194446480 complement(3678636..3680612) 1 NC_011080.1 'catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen'; glycogen debranching protein 3680612 glgX 423368003901 glgX Salmonella enterica subsp. enterica serovar Newport str. SL254 glycogen debranching protein YP_002042782.1 3678636 R 423368 CDS YP_002042783.1 194443590 complement(3680609..3682795) 1 NC_011080.1 'catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain'; glycogen branching protein 3682795 glgB 423368003902 glgB Salmonella enterica subsp. enterica serovar Newport str. SL254 glycogen branching protein YP_002042783.1 3680609 R 423368 CDS YP_002042784.1 194442883 complement(3683142..3684248) 1 NC_011080.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3684248 asd 423368003903 asd Salmonella enterica subsp. enterica serovar Newport str. SL254 aspartate-semialdehyde dehydrogenase YP_002042784.1 3683142 R 423368 CDS YP_002042785.1 194442877 complement(3684671..3686011) 1 NC_011080.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; low affinity gluconate transporter 3686011 gntU 423368003904 gntU Salmonella enterica subsp. enterica serovar Newport str. SL254 low affinity gluconate transporter YP_002042785.1 3684671 R 423368 CDS YP_002042786.1 194444898 complement(3686008..3686502) 1 NC_011080.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase 3686502 gntK 423368003905 gntK Salmonella enterica subsp. enterica serovar Newport str. SL254 gluconate kinase YP_002042786.1 3686008 R 423368 CDS YP_002042787.2 448967555 complement(3686680..3687675) 1 NC_011080.1 identified by match to protein family HMM PF00532; transcriptional regulator GntR 3687675 gntR 423368003906 gntR Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator GntR YP_002042787.2 3686680 R 423368 CDS YP_002042788.1 194443245 complement(3687805..3688500) 1 NC_011080.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883; hypothetical protein 3688500 423368003907 SNSL254_A3811 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042788.1 3687805 R 423368 CDS YP_002042789.1 194442749 complement(3688624..3689661) 1 NC_011080.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; dehydrogenase 3689661 423368003908 SNSL254_A3812 Salmonella enterica subsp. enterica serovar Newport str. SL254 dehydrogenase YP_002042789.1 3688624 R 423368 CDS YP_002042790.1 194446542 3690129..3690617 1 NC_011080.1 YhhY; regulated by the fur regulator; unknown function; acetyltransferase YhhY 3690617 423368003910 SNSL254_A3814 Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyltransferase YhhY YP_002042790.1 3690129 D 423368 CDS YP_002042791.1 194446064 complement(3690698..3690814) 1 NC_011080.1 identified by glimmer; hypothetical protein 3690814 423368003911 SNSL254_A3815 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042791.1 3690698 R 423368 CDS YP_002042792.1 194445840 3690882..3692096 1 NC_011080.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; ribokinase 3692096 423368003912 SNSL254_A3816 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribokinase YP_002042792.1 3690882 D 423368 CDS YP_002042793.1 194445340 3692112..3692873 1 NC_011080.1 identified by match to protein family HMM PF07090; hypothetical protein 3692873 423368003913 SNSL254_A3817 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042793.1 3692112 D 423368 CDS YP_002042794.1 194445324 3692927..3693898 1 NC_011080.1 hypothetical protein 3693898 423368003914 SNSL254_A3818 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042794.1 3692927 D 423368 CDS YP_002042795.1 194444332 3693895..3694929 1 NC_011080.1 identified by match to protein family HMM PF02126; phophotriesterase 3694929 423368003915 SNSL254_A3819 Salmonella enterica subsp. enterica serovar Newport str. SL254 phophotriesterase YP_002042795.1 3693895 D 423368 CDS YP_002042796.1 194443662 complement(3694974..3696716) 1 NC_011080.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase 3696716 ggt 423368003916 ggt Salmonella enterica subsp. enterica serovar Newport str. SL254 gamma-glutamyltranspeptidase YP_002042796.1 3694974 R 423368 CDS YP_002042797.1 194444144 3696842..3697258 1 NC_011080.1 hypothetical protein 3697258 423368003917 SNSL254_A3821 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042797.1 3696842 D 423368 CDS YP_002042798.1 194444844 complement(3697271..3698011) 1 NC_011080.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase 3698011 ugpQ 423368003918 ugpQ Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerophosphodiester phosphodiesterase YP_002042798.1 3697271 R 423368 CDS YP_002042799.1 194445506 complement(3698008..3699078) 1 NC_011080.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 3699078 ugpC 423368003919 ugpC Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol-3-phosphate transporter ATP-binding subunit YP_002042799.1 3698008 R 423368 CDS YP_002042800.1 194446126 complement(3699081..3699926) 1 NC_011080.1 with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein 3699926 423368003920 SNSL254_A3824 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol-3-phosphate transporter membrane protein YP_002042800.1 3699081 R 423368 CDS YP_002042801.1 194446760 complement(3699923..3700810) 1 NC_011080.1 with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease 3700810 ugpA 423368003921 ugpA Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol-3-phosphate transporter permease YP_002042801.1 3699923 R 423368 CDS YP_002042802.1 194442802 complement(3700915..3702231) 1 NC_011080.1 with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein 3702231 423368003922 SNSL254_A3826 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol-3-phosphate transporter periplasmic binding protein YP_002042802.1 3700915 R 423368 CDS YP_002042803.1 194443422 complement(3702490..3702858) 1 NC_011080.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; death on curing protein 3702858 423368003923 SNSL254_A3827 Salmonella enterica subsp. enterica serovar Newport str. SL254 death on curing protein YP_002042803.1 3702490 R 423368 CDS YP_002042804.1 194444205 complement(3702855..3703076) 1 NC_011080.1 identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; addiction module antitoxin 3703076 423368003924 SNSL254_A3828 Salmonella enterica subsp. enterica serovar Newport str. SL254 addiction module antitoxin YP_002042804.1 3702855 R 423368 CDS YP_002042805.1 194444810 complement(3703208..3703921) 1 NC_011080.1 'with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter ATP-binding subunit 3703921 livF 423368003925 livF Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine/isoleucine/valine transporter ATP-binding subunit YP_002042805.1 3703208 R 423368 CDS YP_002042806.1 194445316 complement(3703923..3704690) 1 NC_011080.1 'Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter ATP-binding subunit 3704690 livG 423368003926 livG Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine/isoleucine/valine transporter ATP-binding subunit YP_002042806.1 3703923 R 423368 CDS YP_002042807.1 194443944 complement(3704687..3705964) 1 NC_011080.1 'Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter permease subunit 3705964 livM 423368003927 livM Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine/isoleucine/valine transporter permease subunit YP_002042807.1 3704687 R 423368 CDS YP_002042808.1 194443794 complement(3705961..3706887) 1 NC_011080.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease LivH 3706887 livH 423368003928 livH Salmonella enterica subsp. enterica serovar Newport str. SL254 branched-chain amino acid transporter permease LivH YP_002042808.1 3705961 R 423368 CDS YP_002042809.1 194446089 complement(3706947..3708056) 1 NC_011080.1 identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK 3708056 livK 423368003929 livK Salmonella enterica subsp. enterica serovar Newport str. SL254 high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK YP_002042809.1 3706947 R 423368 CDS YP_002042810.1 194443116 3708478..3708861 1 NC_011080.1 identified by match to protein family HMM PF00583; GNAT family acetyltransferase 3708861 423368003930 SNSL254_A3834 Salmonella enterica subsp. enterica serovar Newport str. SL254 GNAT family acetyltransferase YP_002042810.1 3708478 D 423368 CDS YP_002042811.1 194446517 3708839..3708973 1 NC_011080.1 hypothetical protein 3708973 423368003931 SNSL254_A3835 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042811.1 3708839 D 423368 CDS YP_002042812.1 194445875 complement(3709057..3710154) 1 NC_011080.1 identified by match to protein family HMM PF01094; leucine-specific-binding protein 3710154 423368003932 SNSL254_A3836 Salmonella enterica subsp. enterica serovar Newport str. SL254 leucine-specific-binding protein YP_002042812.1 3709057 R 423368 CDS YP_002042813.1 194443524 complement(3710482..3711336) 1 NC_011080.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 3711336 rpoH 423368003933 rpoH Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA polymerase factor sigma-32 YP_002042813.1 3710482 R 423368 CDS YP_002042814.1 194445196 complement(3711582..3712637) 1 NC_011080.1 'ABC transporter, membrane protein'; cell division protein FtsX 3712637 ftsX 423368003934 ftsX Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein FtsX YP_002042814.1 3711582 R 423368 CDS YP_002042815.1 194442212 complement(3712630..3713298) 1 NC_011080.1 'ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions'; cell division protein FtsE 3713298 ftsE 423368003935 ftsE Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein FtsE YP_002042815.1 3712630 R 423368 CDS YP_002042816.1 194442699 complement(3713301..3714776) 1 NC_011080.1 signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY 3714776 423368003936 SNSL254_A3840 Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein FtsY YP_002042816.1 3713301 R 423368 CDS YP_002042817.1 194445335 3714875..3715498 1 NC_011080.1 catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3715498 rsmD 423368003937 rsmD Salmonella enterica subsp. enterica serovar Newport str. SL254 16S rRNA m(2)G966-methyltransferase YP_002042817.1 3714875 D 423368 CDS YP_002042818.1 194444665 3715488..3715757 1 NC_011080.1 identified by match to protein family HMM PF06611; hypothetical protein 3715757 423368003938 SNSL254_A3842 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042818.1 3715488 D 423368 CDS YP_002042819.1 194443552 complement(3715779..3716150) 1 NC_011080.1 hypothetical protein 3716150 423368003939 SNSL254_A3843 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042819.1 3715779 R 423368 CDS YP_002042820.1 194445374 3716292..3716918 1 NC_011080.1 identified by match to protein family HMM PF07947; hypothetical protein 3716918 423368003940 SNSL254_A3844 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042820.1 3716292 D 423368 CDS YP_002042821.1 194442692 3716999..3719197 1 NC_011080.1 'P-type ATPase involved in the export of lead, cadmium, zinc and mercury'; zinc/cadmium/mercury/lead-transporting ATPase 3719197 zntA 423368003941 zntA Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc/cadmium/mercury/lead-transporting ATPase YP_002042821.1 3716999 D 423368 CDS YP_002042822.1 194444489 3719397..3721040 1 NC_011080.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 3721040 423368003942 SNSL254_A3846 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyl-accepting chemotaxis protein I YP_002042822.1 3719397 D 423368 CDS YP_002042823.1 194444607 complement(3721064..3721399) 1 NC_011080.1 identified by match to protein family HMM PF01206; hypothetical protein 3721399 423368003943 SNSL254_A3847 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042823.1 3721064 R 423368 CDS YP_002042824.1 194444110 3721479..3722144 1 NC_011080.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 3722144 423368003944 SNSL254_A3848 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042824.1 3721479 D 423368 CDS YP_002042825.1 194445874 3722217..3722774 1 NC_011080.1 hypothetical protein 3722774 423368003945 SNSL254_A3849 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042825.1 3722217 D 423368 CDS YP_002042826.1 194445366 complement(3722778..3723995) 1 NC_011080.1 identified by match to protein family HMM PF07690; major facilitator superfamily transporter 3723995 423368003946 SNSL254_A3850 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator superfamily transporter YP_002042826.1 3722778 R 423368 CDS YP_002042827.1 194444171 3724127..3725176 1 NC_011080.1 identified by match to protein family HMM PF01594; hypothetical protein 3725176 423368003947 SNSL254_A3851 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042827.1 3724127 D 423368 CDS YP_002042828.1 194442519 3725228..3725806 1 NC_011080.1 identified by match to protein family HMM PF01648; holo-(acyl carrier protein) synthase 2 3725806 423368003948 SNSL254_A3852 Salmonella enterica subsp. enterica serovar Newport str. SL254 holo-(acyl carrier protein) synthase 2 YP_002042828.1 3725228 D 423368 CDS YP_002042829.1 194443801 3725862..3726299 1 NC_011080.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3726299 nikR 423368003949 nikR Salmonella enterica subsp. enterica serovar Newport str. SL254 nickel responsive regulator YP_002042829.1 3725862 D 423368 CDS YP_002042830.1 194442313 complement(3726389..3727513) 1 NC_011080.1 identified by match to protein family HMM PF01061; ABC transporter ATP-binding protein 3727513 423368003950 SNSL254_A3854 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002042830.1 3726389 R 423368 CDS YP_002042831.1 194442582 complement(3727513..3730254) 1 NC_011080.1 identified by match to protein family HMM PF00005; match to protein family HMM PF01061; ABC transporter permease/ATP-binding protein 3730254 423368003951 SNSL254_A3855 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease/ATP-binding protein YP_002042831.1 3727513 R 423368 CDS YP_002042832.1 194443085 complement(3730251..3731318) 1 NC_011080.1 identified by match to protein family HMM PF00529; auxiliary transport protein membrane fusion protein (MFP) family 3731318 423368003952 SNSL254_A3856 Salmonella enterica subsp. enterica serovar Newport str. SL254 auxiliary transport protein membrane fusion protein (MFP) family YP_002042832.1 3730251 R 423368 CDS YP_002042833.1 194445952 3731410..3731541 1 NC_011080.1 identified by glimmer; hypothetical protein 3731541 423368003953 SNSL254_A3857 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042833.1 3731410 D 423368 CDS YP_002042834.1 194446673 complement(3731624..3732820) 1 NC_011080.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein 3732820 423368003954 SNSL254_A3858 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042834.1 3731624 R 423368 CDS YP_002042835.1 194444587 3733051..3734547 1 NC_011080.1 identified by match to protein family HMM PF01384; low-affinity inorganic phosphate transporter 2 3734547 423368003955 SNSL254_A3859 Salmonella enterica subsp. enterica serovar Newport str. SL254 low-affinity inorganic phosphate transporter 2 YP_002042835.1 3733051 D 423368 CDS YP_002042836.1 194445338 complement(3734688..3734969) 1 NC_011080.1 'ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress'; universal stress protein UspB 3734969 423368003956 SNSL254_A3860 Salmonella enterica subsp. enterica serovar Newport str. SL254 universal stress protein UspB YP_002042836.1 3734688 R 423368 CDS YP_002042837.1 194442786 3735411..3735845 1 NC_011080.1 identified by match to protein family HMM PF00582; universal stress protein A 3735845 uspA 423368003957 uspA Salmonella enterica subsp. enterica serovar Newport str. SL254 universal stress protein A YP_002042837.1 3735411 D 423368 CDS YP_002042838.1 194446192 3736170..3737642 1 NC_011080.1 member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3737642 423368003958 SNSL254_A3862 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transporter YhiP YP_002042838.1 3736170 D 423368 CDS YP_002042839.1 194443296 complement(3737734..3738492) 1 NC_011080.1 predicted SAM-dependent methyltransferase; methyltransferase 3738492 423368003959 SNSL254_A3863 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyltransferase YP_002042839.1 3737734 R 423368 CDS YP_002042840.1 194446166 complement(3738499..3740541) 1 NC_011080.1 identified by match to protein family HMM PF01432; oligopeptidase A 3740541 423368003960 SNSL254_A3864 Salmonella enterica subsp. enterica serovar Newport str. SL254 oligopeptidase A YP_002042840.1 3738499 R 423368 CDS YP_002042841.1 194446419 complement(3740704..3741357) 1 NC_011080.1 hypothetical protein 3741357 423368003961 SNSL254_A3865 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042841.1 3740704 R 423368 CDS YP_002042842.1 194444537 3741635..3742078 1 NC_011080.1 hypothetical protein 3742078 423368003962 SNSL254_A3866 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042842.1 3741635 D 423368 CDS YP_002042843.1 194445244 3742199..3743041 1 NC_011080.1 identified by match to protein family HMM PF04378; DNA utilization protein YhiR 3743041 yhiR 423368003963 yhiR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA utilization protein YhiR YP_002042843.1 3742199 D 423368 CDS YP_002042844.1 194445415 complement(3743002..3743133) 1 NC_011080.1 identified by glimmer; hypothetical protein 3743133 423368003964 SNSL254_A3868 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042844.1 3743002 R 423368 CDS YP_002042845.1 194444419 3743146..3744498 1 NC_011080.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3744498 gor 423368003965 gor Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione reductase YP_002042845.1 3743146 D 423368 CDS YP_002042846.1 194442632 complement(3744545..3745588) 1 NC_011080.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase 3745588 423368003966 SNSL254_A3870 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-asparaginase YP_002042846.1 3744545 R 423368 CDS YP_002042847.1 194444246 complement(3745647..3746966) 1 NC_011080.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 3746966 423368003967 SNSL254_A3871 Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic C4-dicarboxylate transporter YP_002042847.1 3745647 R 423368 CDS YP_002042848.1 194444154 complement(3747020..3747865) 1 NC_011080.1 identified by match to protein family HMM PF00294; PfkB domain-containing protein 3747865 423368003968 SNSL254_A3872 Salmonella enterica subsp. enterica serovar Newport str. SL254 PfkB domain-containing protein YP_002042848.1 3747020 R 423368 CDS YP_002042849.1 194442363 complement(3747929..3748903) 1 NC_011080.1 identified by match to protein family HMM PF01380; sugar isomerase 3748903 423368003969 SNSL254_A3873 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar isomerase YP_002042849.1 3747929 R 423368 CDS YP_002042850.1 194442876 complement(3749082..3749801) 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 3749801 423368003970 SNSL254_A3874 Salmonella enterica subsp. enterica serovar Newport str. SL254 GntR family transcriptional regulator YP_002042850.1 3749082 R 423368 CDS YP_002042851.1 194445655 3750128..3751777 1 NC_011080.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3751777 treF 423368003971 treF Salmonella enterica subsp. enterica serovar Newport str. SL254 trehalase YP_002042851.1 3750128 D 423368 CDS YP_002042852.1 194446680 complement(3751790..3753379) 1 NC_011080.1 hypothetical protein 3753379 423368003972 SNSL254_A3876 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042852.1 3751790 R 423368 CDS YP_002042853.1 194446112 3753660..3754016 1 NC_011080.1 phage endolysin 3754016 423368003973 SNSL254_A3877 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage endolysin YP_002042853.1 3753660 D 423368 CDS YP_002042854.1 194446637 complement(3754022..3754624) 1 NC_011080.1 identified by match to protein family HMM PF00196; match to protein family HMM PF01726; match to protein family HMM PF08281; transcriptional regulator 3754624 423368003974 SNSL254_A3878 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002042854.1 3754022 R 423368 CDS YP_002042855.1 194444827 3755251..3756153 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 3756153 423368003975 SNSL254_A3879 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR substrate binding domain-containing protein YP_002042855.1 3755251 D 423368 CDS YP_002042856.1 194444749 3756226..3757254 1 NC_011080.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00766; ribonuclease 3757254 423368003976 SNSL254_A3880 Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease YP_002042856.1 3756226 D 423368 CDS YP_002042857.1 194442350 3757605..3758927 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; MFS transporter, metabolite:H+ symporter (MHS) family protein 3758927 423368003977 SNSL254_A3881 Salmonella enterica subsp. enterica serovar Newport str. SL254 MFS transporter, metabolite:H+ symporter (MHS) family protein YP_002042857.1 3757605 D 423368 CDS YP_002042858.1 194442684 complement(3758967..3761027) 1 NC_011080.1 identified by match to protein family HMM PF05170; AsmA family protein 3761027 423368003978 SNSL254_A3882 Salmonella enterica subsp. enterica serovar Newport str. SL254 AsmA family protein YP_002042858.1 3758967 R 423368 CDS YP_002042859.1 194445535 complement(3761137..3761904) 1 NC_011080.1 in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein 3761904 423368003979 SNSL254_A3883 Salmonella enterica subsp. enterica serovar Newport str. SL254 EAL domain-containing protein YP_002042859.1 3761137 R 423368 CDS YP_008083653.1 513538131 3762133..3763062 1 NC_011080.1 2-dehydro-3-deoxygluconokinase 3763062 423368003980 SNSL254_A3884 Salmonella enterica subsp. enterica serovar Newport str. SL254 2-dehydro-3-deoxygluconokinase YP_008083653.1 3762133 D 423368 CDS YP_002042860.1 194444038 complement(3763116..3764603) 1 NC_011080.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; hypothetical protein 3764603 423368003981 SNSL254_A3885 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042860.1 3763116 R 423368 CDS YP_002042861.1 194444654 complement(3764823..3766109) 1 NC_011080.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3766109 dctA 423368003982 dctA Salmonella enterica subsp. enterica serovar Newport str. SL254 C4-dicarboxylate transporter DctA YP_002042861.1 3764823 R 423368 CDS YP_002042862.1 194444940 complement(3766267..3768273) 1 NC_011080.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli; phosphodiesterase 3768273 423368003983 SNSL254_A3887 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphodiesterase YP_002042862.1 3766267 R 423368 CDS YP_002042863.1 194444308 complement(3768447..3771989) 1 NC_011080.1 'cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA'; cellulose synthase subunit BcsC 3771989 423368003984 SNSL254_A3888 Salmonella enterica subsp. enterica serovar Newport str. SL254 cellulose synthase subunit BcsC YP_002042863.1 3768447 R 423368 CDS YP_002042864.1 194444186 complement(3771971..3773080) 1 NC_011080.1 'catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans'; endo-1,4-D-glucanase 3773080 bcsZ 423368003985 bcsZ Salmonella enterica subsp. enterica serovar Newport str. SL254 endo-1,4-D-glucanase YP_002042864.1 3771971 R 423368 CDS YP_002042865.1 194443536 complement(3773084..3775363) 1 NC_011080.1 'binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)'; cellulose synthase regulator protein 3775363 bcsB 423368003986 bcsB Salmonella enterica subsp. enterica serovar Newport str. SL254 cellulose synthase regulator protein YP_002042865.1 3773084 R 423368 CDS YP_002042866.1 194445847 complement(3775395..3778019) 1 NC_011080.1 'polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis'; cellulose synthase catalytic subunit 3778019 bcsA 423368003987 bcsA Salmonella enterica subsp. enterica serovar Newport str. SL254 cellulose synthase catalytic subunit YP_002042866.1 3775395 R 423368 CDS YP_002042867.1 194446430 complement(3778016..3778768) 1 NC_011080.1 identified by match to protein family HMM PF06564; match to protein family HMM TIGR03371; cell division protein 3778768 yhjQ 423368003988 yhjQ Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein YP_002042867.1 3778016 R 423368 CDS YP_002042868.1 194442682 complement(3778769..3778972) 1 NC_011080.1 hypothetical protein 3778972 423368003989 SNSL254_A3893 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042868.1 3778769 R 423368 CDS YP_002042870.2 448967556 3779217..3780788 1 NC_011080.1 identified by match to protein family HMM TIGR03369; cellulose biosynthesis protein BcsE 3780788 423368003990 SNSL254_A3895 Salmonella enterica subsp. enterica serovar Newport str. SL254 cellulose biosynthesis protein BcsE YP_002042870.2 3779217 D 423368 CDS YP_002042871.1 194445722 3780785..3780976 1 NC_011080.1 identified by match to protein family HMM TIGR03493; cellulose biosynthesis operon protein BcsF/YhjT 3780976 bcsF 423368003991 bcsF Salmonella enterica subsp. enterica serovar Newport str. SL254 cellulose biosynthesis operon protein BcsF/YhjT YP_002042871.1 3780785 D 423368 CDS YP_002042872.1 194446406 3780973..3782652 1 NC_011080.1 identified by match to protein family HMM TIGR03368; cellulose synthase operon protein YhjU 3782652 yhjU 423368003992 yhjU Salmonella enterica subsp. enterica serovar Newport str. SL254 cellulose synthase operon protein YhjU YP_002042872.1 3780973 D 423368 CDS YP_002042874.1 194445021 3783484..3784782 1 NC_011080.1 inner membrane transport protein YhaO 3784782 423368003994 SNSL254_A3901 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport protein YhaO YP_002042874.1 3783484 D 423368 CDS YP_002042875.1 194445624 complement(3784883..3785896) 1 NC_011080.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 3785896 dppF 423368003995 dppF Salmonella enterica subsp. enterica serovar Newport str. SL254 dipeptide transporter ATP-binding subunit YP_002042875.1 3784883 R 423368 CDS YP_002042876.1 194446179 complement(3785893..3786876) 1 NC_011080.1 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit 3786876 dppD 423368003996 dppD Salmonella enterica subsp. enterica serovar Newport str. SL254 dipeptide transporter ATP-binding subunit YP_002042876.1 3785893 R 423368 CDS YP_002042877.1 194446687 complement(3786887..3787789) 1 NC_011080.1 identified by match to protein family HMM PF00528; dipeptide transporter 3787789 dppC 423368003997 dppC Salmonella enterica subsp. enterica serovar Newport str. SL254 dipeptide transporter YP_002042877.1 3786887 R 423368 CDS YP_002042878.1 194444885 complement(3787799..3788818) 1 NC_011080.1 transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB 3788818 dppB 423368003998 dppB Salmonella enterica subsp. enterica serovar Newport str. SL254 dipeptide transporter permease DppB YP_002042878.1 3787799 R 423368 CDS YP_002042879.1 194445408 complement(3788975..3790555) 1 NC_011080.1 identified by match to protein family HMM PF00496; dipeptide ABC transporter substrate-binding protein 3790555 dppA 423368003999 dppA Salmonella enterica subsp. enterica serovar Newport str. SL254 dipeptide ABC transporter substrate-binding protein YP_002042879.1 3788975 R 423368 CDS YP_002042880.1 194443579 complement(3791138..3792463) 1 NC_011080.1 identified by match to protein family HMM PF00860; xanthine/uracil/vitamin C permease 3792463 423368004000 SNSL254_A3907 Salmonella enterica subsp. enterica serovar Newport str. SL254 xanthine/uracil/vitamin C permease YP_002042880.1 3791138 R 423368 CDS YP_002042881.1 194444096 complement(3792521..3793645) 1 NC_011080.1 PQQ enzyme repeat 3793645 423368004001 SNSL254_A3908 Salmonella enterica subsp. enterica serovar Newport str. SL254 PQQ enzyme repeat YP_002042881.1 3792521 R 423368 CDS YP_002042882.1 194444374 3793698..3793811 1 NC_011080.1 identified by glimmer; hypothetical protein 3793811 423368004002 SNSL254_A3909 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042882.1 3793698 D 423368 CDS YP_002042883.1 194442857 3793795..3794802 1 NC_011080.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI:Periplasmic binding protein/LacI transcriptional regulator 3794802 423368004003 SNSL254_A3910 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein LacI:Periplasmic binding protein/LacI transcriptional regulator YP_002042883.1 3793795 D 423368 CDS YP_002042884.1 194442974 complement(3795283..3796974) 1 NC_011080.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase 3796974 423368004006 SNSL254_A3913 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoethanolamine transferase YP_002042884.1 3795283 R 423368 CDS YP_002042885.1 194442380 complement(3797192..3797719) 1 NC_011080.1 identified by match to protein family HMM PF00419; hypothetical protein 3797719 423368004007 SNSL254_A3914 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042885.1 3797192 R 423368 CDS YP_003495232.1 291080899 complement(3797725..3798804) 1 NC_011080.1 long polar fimbrial protein 3798804 423368004008 SNSL254_A3915 Salmonella enterica subsp. enterica serovar Newport str. SL254 long polar fimbrial protein YP_003495232.1 3797725 R 423368 CDS YP_002042886.1 194444158 complement(3798822..3801350) 1 NC_011080.1 identified by match to protein family HMM PF00577; fimbrial usher protein 3801350 423368004009 SNSL254_A3916 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial usher protein YP_002042886.1 3798822 R 423368 CDS YP_002042887.1 194445517 complement(3801373..3802071) 1 NC_011080.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pili assembly chaperone, N- domain 3802071 423368004010 SNSL254_A3917 Salmonella enterica subsp. enterica serovar Newport str. SL254 pili assembly chaperone, N- domain YP_002042887.1 3801373 R 423368 CDS YP_002042888.1 194444983 complement(3802156..3802680) 1 NC_011080.1 identified by match to protein family HMM PF00419; long polar fimbria protein A 3802680 423368004011 SNSL254_A3918 Salmonella enterica subsp. enterica serovar Newport str. SL254 long polar fimbria protein A YP_002042888.1 3802156 R 423368 CDS YP_002042889.1 194444847 3803035..3803196 1 NC_011080.1 identified by glimmer; hypothetical protein 3803196 423368004012 SNSL254_A3919 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042889.1 3803035 D 423368 CDS YP_002042890.1 194446755 complement(3803198..3803902) 1 NC_011080.1 lipase 3803902 423368004013 SNSL254_A3920 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipase YP_002042890.1 3803198 R 423368 CDS YP_002042891.1 194445817 3804059..3804640 1 NC_011080.1 'constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine'; 3-methyladenine DNA glycosylase 3804640 423368004014 SNSL254_A3921 Salmonella enterica subsp. enterica serovar Newport str. SL254 3-methyladenine DNA glycosylase YP_002042891.1 3804059 D 423368 CDS YP_002042892.1 194445658 3804618..3805058 1 NC_011080.1 identified by match to protein family HMM PF00583; hypothetical protein 3805058 423368004015 SNSL254_A3922 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042892.1 3804618 D 423368 CDS YP_002042893.1 194443080 complement(3805027..3807360) 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; biotin sulfoxide reductase 3807360 423368004016 SNSL254_A3923 Salmonella enterica subsp. enterica serovar Newport str. SL254 biotin sulfoxide reductase YP_002042893.1 3805027 R 423368 CDS YP_002042894.1 194446335 3807513..3808175 1 NC_011080.1 identified by match to protein family HMM PF00691; match to protein family HMM PF05433; outer membrane lipoprotein 3808175 423368004017 SNSL254_A3924 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein YP_002042894.1 3807513 D 423368 CDS YP_002042895.1 194442674 3808394..3809368 1 NC_011080.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; 2-ketogluconate reductase 3809368 423368004018 SNSL254_A3925 Salmonella enterica subsp. enterica serovar Newport str. SL254 2-ketogluconate reductase YP_002042895.1 3808394 D 423368 CDS YP_002042896.1 194443291 complement(3809418..3810128) 1 NC_011080.1 hypothetical protein 3810128 423368004019 SNSL254_A3926 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042896.1 3809418 R 423368 CDS YP_002042897.1 194443871 complement(3810278..3810409) 1 NC_011080.1 identified by glimmer; hypothetical protein 3810409 423368004020 SNSL254_A3927 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042897.1 3810278 R 423368 CDS YP_002042898.1 194444336 3810567..3810857 1 NC_011080.1 transcriptional regulator 3810857 423368004021 SNSL254_A3928 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002042898.1 3810567 D 423368 CDS YP_002042899.1 194443289 3811145..3811357 1 NC_011080.1 identified by match to protein family HMM PF00313; major cold shock protein 3811357 423368004022 SNSL254_A3929 Salmonella enterica subsp. enterica serovar Newport str. SL254 major cold shock protein YP_002042899.1 3811145 D 423368 CDS YP_002042900.1 194443639 3811531..3812070 1 NC_011080.1 hypothetical protein 3812070 423368004023 SNSL254_A3930 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042900.1 3811531 D 423368 CDS YP_002042901.1 194443562 complement(3812121..3814190) 1 NC_011080.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 3814190 glyS 423368004024 glyS Salmonella enterica subsp. enterica serovar Newport str. SL254 glycyl-tRNA synthetase subunit beta YP_002042901.1 3812121 R 423368 CDS YP_002042902.1 194444075 complement(3814200..3815111) 1 NC_011080.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 3815111 glyQ 423368004025 glyQ Salmonella enterica subsp. enterica serovar Newport str. SL254 glycyl-tRNA synthetase subunit alpha YP_002042902.1 3814200 R 423368 CDS YP_002042903.2 448967557 complement(3815250..3815552) 1 NC_011080.1 hypothetical protein 3815552 423368004026 SNSL254_A3934 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042903.2 3815250 R 423368 CDS YP_002042905.1 194442243 3815718..3816713 1 NC_011080.1 identified by match to protein family HMM PF01757; acyltransferase 3816713 423368004027 SNSL254_A3935 Salmonella enterica subsp. enterica serovar Newport str. SL254 acyltransferase YP_002042905.1 3815718 D 423368 CDS YP_002042906.1 194444981 complement(3816736..3817089) 1 NC_011080.1 identified by match to protein family HMM PF05360; hypothetical protein 3817089 423368004028 SNSL254_A3936 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042906.1 3816736 R 423368 CDS YP_002042907.1 194446653 complement(3817120..3817257) 1 NC_011080.1 identified by glimmer; hypothetical protein 3817257 423368004029 SNSL254_A3937 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042907.1 3817120 R 423368 CDS YP_002042908.1 194445502 complement(3817264..3818718) 1 NC_011080.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312; xylulokinase 3818718 xylB 423368004030 xylB Salmonella enterica subsp. enterica serovar Newport str. SL254 xylulokinase YP_002042908.1 3817264 R 423368 CDS YP_002042909.1 194444823 complement(3818818..3820140) 1 NC_011080.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 3820140 xylA 423368004031 xylA Salmonella enterica subsp. enterica serovar Newport str. SL254 xylose isomerase YP_002042909.1 3818818 R 423368 CDS YP_002042910.1 194444174 3820503..3821681 1 NC_011080.1 identified by match to protein family HMM PF00165; xylose operon regulatory protein 3821681 423368004032 SNSL254_A3940 Salmonella enterica subsp. enterica serovar Newport str. SL254 xylose operon regulatory protein YP_002042910.1 3820503 D 423368 CDS YP_002042911.1 194443505 complement(3821742..3822665) 1 NC_011080.1 identified by match to protein family HMM PF01832; hypothetical protein 3822665 bax 423368004033 bax Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042911.1 3821742 R 423368 CDS YP_002042912.1 194445720 3822881..3824908 1 NC_011080.1 'periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds'; periplasmic alpha-amylase 3824908 malS 423368004034 malS Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic alpha-amylase YP_002042912.1 3822881 D 423368 CDS YP_002042913.1 194443933 3825082..3826332 1 NC_011080.1 'transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis'; valine--pyruvate transaminase 3826332 avtA 423368004035 avtA Salmonella enterica subsp. enterica serovar Newport str. SL254 valine--pyruvate transaminase YP_002042913.1 3825082 D 423368 CDS YP_002042914.1 194442517 complement(3826369..3826842) 1 NC_011080.1 identified by match to protein family HMM PF00037; oxidoreductase AegA 3826842 423368004036 SNSL254_A3944 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase AegA YP_002042914.1 3826369 R 423368 CDS YP_002042915.1 194443132 complement(3826959..3827759) 1 NC_011080.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; HTH-type transcriptional regulator YiaJ 3827759 423368004037 SNSL254_A3945 Salmonella enterica subsp. enterica serovar Newport str. SL254 HTH-type transcriptional regulator YiaJ YP_002042915.1 3826959 R 423368 CDS YP_002042916.1 194443785 3827989..3828987 1 NC_011080.1 'NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate'; 2,3-diketo-L-gulonate reductase 3828987 423368004038 SNSL254_A3946 Salmonella enterica subsp. enterica serovar Newport str. SL254 2,3-diketo-L-gulonate reductase YP_002042916.1 3827989 D 423368 CDS YP_002042917.1 194444490 3828999..3829463 1 NC_011080.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 3829463 423368004039 SNSL254_A3947 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042917.1 3828999 D 423368 CDS YP_002042918.1 194446254 3829487..3830419 1 NC_011080.1 hypothetical protein 3830419 423368004040 SNSL254_A3948 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042918.1 3829487 D 423368 CDS YP_002042919.1 194444594 3830558..3831031 1 NC_011080.1 'membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO'; 2,3-diketo-L-gulonate TRAP transporter small permease 3831031 423368004041 SNSL254_A3949 Salmonella enterica subsp. enterica serovar Newport str. SL254 2,3-diketo-L-gulonate TRAP transporter small permease YP_002042919.1 3830558 D 423368 CDS YP_002042920.1 194442924 3831034..3832311 1 NC_011080.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; 2,3-diketo-l-gulonate trap transporter large permease protein yian 3832311 423368004042 SNSL254_A3950 Salmonella enterica subsp. enterica serovar Newport str. SL254 2,3-diketo-l-gulonate trap transporter large permease protein yian YP_002042920.1 3831034 D 423368 CDS YP_002042921.1 194445913 3832323..3833309 1 NC_011080.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter subunit DctP 3833309 423368004043 SNSL254_A3951 Salmonella enterica subsp. enterica serovar Newport str. SL254 trap dicarboxylate transporter subunit DctP YP_002042921.1 3832323 D 423368 CDS YP_002042922.1 194443418 3833313..3834809 1 NC_011080.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; L-xylulose/3-keto-L-gulonate kinase 3834809 423368004044 SNSL254_A3952 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-xylulose/3-keto-L-gulonate kinase YP_002042922.1 3833313 D 423368 CDS YP_002042923.1 194442300 3834806..3835468 1 NC_011080.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3835468 sgbH 423368004045 sgbH Salmonella enterica subsp. enterica serovar Newport str. SL254 3-keto-L-gulonate-6-phosphate decarboxylase YP_002042923.1 3834806 D 423368 CDS YP_002042924.1 194445283 3835461..3836321 1 NC_011080.1 'L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate'; L-xylulose 5-phosphate 3-epimerase 3836321 423368004046 SNSL254_A3954 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-xylulose 5-phosphate 3-epimerase YP_002042924.1 3835461 D 423368 CDS YP_002042925.1 194445940 3836315..3837010 1 NC_011080.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3837010 sgbE 423368004047 sgbE Salmonella enterica subsp. enterica serovar Newport str. SL254 L-ribulose-5-phosphate 4-epimerase YP_002042925.1 3836315 D 423368 CDS YP_002042926.1 194444428 complement(3837171..3837986) 1 NC_011080.1 identified by match to protein family HMM PF00165; regulatory protein 3837986 423368004048 SNSL254_A3956 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein YP_002042926.1 3837171 R 423368 CDS YP_002042927.1 194444786 3838250..3840205 1 NC_011080.1 identified by match to protein family HMM PF07944; hypothetical protein 3840205 423368004049 SNSL254_A3957 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042927.1 3838250 D 423368 CDS YP_002042928.1 194445169 complement(3840491..3842029) 1 NC_011080.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 3842029 aldB 423368004050 aldB Salmonella enterica subsp. enterica serovar Newport str. SL254 aldehyde dehydrogenase YP_002042928.1 3840491 R 423368 CDS YP_002042929.1 194445844 3842198..3843079 1 NC_011080.1 identified by match to protein family HMM PF00480; transcriptional regulator 3843079 423368004051 SNSL254_A3959 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002042929.1 3842198 D 423368 CDS YP_002042930.1 194444443 complement(3843327..3845177) 1 NC_011080.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00475; selenocysteinyl-tRNA-specific translation factor 3845177 selB 423368004052 selB Salmonella enterica subsp. enterica serovar Newport str. SL254 selenocysteinyl-tRNA-specific translation factor YP_002042930.1 3843327 R 423368 CDS YP_002042931.1 194445076 complement(3845174..3846565) 1 NC_011080.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 3846565 selA 423368004053 selA Salmonella enterica subsp. enterica serovar Newport str. SL254 selenocysteine synthase YP_002042931.1 3845174 R 423368 CDS YP_002042932.1 194443105 complement(3846664..3847272) 1 NC_011080.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 3847272 423368004054 SNSL254_A3962 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione S-transferase YP_002042932.1 3846664 R 423368 CDS YP_002042933.1 194442311 3847748..3849664 1 NC_011080.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system mannitol-specific transporter subunit IICBA 3849664 423368004055 SNSL254_A3963 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system mannitol-specific transporter subunit IICBA YP_002042933.1 3847748 D 423368 CDS YP_002042934.1 194445748 3849885..3851033 1 NC_011080.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; mannitol-1-phosphate 5-dehydrogenase 3851033 mtlD 423368004056 mtlD Salmonella enterica subsp. enterica serovar Newport str. SL254 mannitol-1-phosphate 5-dehydrogenase YP_002042934.1 3849885 D 423368 CDS YP_002042935.1 194442771 3851030..3851620 1 NC_011080.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 3851620 mtlR 423368004057 mtlR Salmonella enterica subsp. enterica serovar Newport str. SL254 mannitol repressor protein YP_002042935.1 3851030 D 423368 CDS YP_002042936.1 194444713 complement(3851630..3851839) 1 NC_011080.1 hypothetical protein 3851839 423368004058 SNSL254_A3966 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042936.1 3851630 R 423368 CDS YP_002042937.1 194446372 3852129..3852491 1 NC_011080.1 hypothetical protein 3852491 423368004059 SNSL254_A3967 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042937.1 3852129 D 423368 CDS YP_002042938.1 194446670 3852572..3852733 1 NC_011080.1 identified by glimmer; hypothetical protein 3852733 423368004060 SNSL254_A3968 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042938.1 3852572 D 423368 CDS YP_002042939.1 194446144 3852979..3853662 1 NC_011080.1 hypothetical protein 3853662 423368004061 SNSL254_A3969 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042939.1 3852979 D 423368 CDS YP_002042940.1 194443588 3853706..3858049 1 NC_011080.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; autotransporter 3858049 423368004062 SNSL254_A3970 Salmonella enterica subsp. enterica serovar Newport str. SL254 autotransporter YP_002042940.1 3853706 D 423368 CDS YP_002042941.1 194444820 3858348..3860003 1 NC_011080.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 3860003 lldP 423368004063 lldP Salmonella enterica subsp. enterica serovar Newport str. SL254 L-lactate permease YP_002042941.1 3858348 D 423368 CDS YP_002042942.1 194444073 3860000..3860776 1 NC_011080.1 represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3860776 423368004064 SNSL254_A3972 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional repressor LldR YP_002042942.1 3860000 D 423368 CDS YP_002042943.1 194446309 3860773..3861963 1 NC_011080.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3861963 lldD 423368004065 lldD Salmonella enterica subsp. enterica serovar Newport str. SL254 L-lactate dehydrogenase YP_002042943.1 3860773 D 423368 CDS YP_002042944.1 194442768 3862028..3862501 1 NC_011080.1 member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA/rRNA methyltransferase YibK 3862501 423368004066 SNSL254_A3974 Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA/rRNA methyltransferase YibK YP_002042944.1 3862028 D 423368 CDS YP_002042945.1 194443984 complement(3862569..3863624) 1 NC_011080.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 3863624 423368004067 SNSL254_A3976 Salmonella enterica subsp. enterica serovar Newport str. SL254 LacI family transcriptional regulator YP_002042945.1 3862569 R 423368 CDS YP_002042946.1 194445804 3863623..3863901 1 NC_011080.1 identified by glimmer; hypothetical protein 3863901 423368004068 SNSL254_A3975 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042946.1 3863623 D 423368 CDS YP_002042947.1 194442977 3863892..3865088 1 NC_011080.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein 3865088 423368004069 SNSL254_A3977 Salmonella enterica subsp. enterica serovar Newport str. SL254 mandelate racemase/muconate lactonizing protein YP_002042947.1 3863892 D 423368 CDS YP_002042948.1 194446563 3865162..3866472 1 NC_011080.1 identified by match to protein family HMM PF07690; glucarate transporter 3866472 423368004070 SNSL254_A3978 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucarate transporter YP_002042948.1 3865162 D 423368 CDS YP_002042949.1 194446045 complement(3866555..3867376) 1 NC_011080.1 catalyzes the O-acetylation of serine; serine acetyltransferase 3867376 cysE 423368004071 cysE Salmonella enterica subsp. enterica serovar Newport str. SL254 serine acetyltransferase YP_002042949.1 3866555 R 423368 CDS YP_002042950.1 194445520 complement(3867454..3868473) 1 NC_011080.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3868473 gpsA 423368004072 gpsA Salmonella enterica subsp. enterica serovar Newport str. SL254 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_002042950.1 3867454 R 423368 CDS YP_002042951.1 194445017 complement(3868473..3868940) 1 NC_011080.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 3868940 secB 423368004073 secB Salmonella enterica subsp. enterica serovar Newport str. SL254 preprotein translocase subunit SecB YP_002042951.1 3868473 R 423368 CDS YP_002042952.1 194442894 complement(3868984..3869235) 1 NC_011080.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 3869235 grxC 423368004074 grxC Salmonella enterica subsp. enterica serovar Newport str. SL254 glutaredoxin 3 YP_002042952.1 3868984 R 423368 CDS YP_002042953.1 194445035 complement(3869322..3869753) 1 NC_011080.1 identified by match to protein family HMM PF00581; rhodanese domain-containing protein 3869753 423368004075 SNSL254_A3983 Salmonella enterica subsp. enterica serovar Newport str. SL254 rhodanese domain-containing protein YP_002042953.1 3869322 R 423368 CDS YP_002042954.1 194446578 3870001..3871545 1 NC_011080.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3871545 gpmI 423368004076 gpmI Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglyceromutase YP_002042954.1 3870001 D 423368 CDS YP_002042955.1 194442467 3871555..3872838 1 NC_011080.1 identified by match to protein family HMM PF01551; hypothetical protein 3872838 423368004077 SNSL254_A3985 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042955.1 3871555 D 423368 CDS YP_002042956.1 194445745 3872842..3873804 1 NC_011080.1 identified by match to protein family HMM PF04748; divergent polysaccharide deacetylase 3873804 423368004078 SNSL254_A3986 Salmonella enterica subsp. enterica serovar Newport str. SL254 divergent polysaccharide deacetylase YP_002042956.1 3872842 D 423368 CDS YP_002042957.1 194445248 complement(3873791..3874825) 1 NC_011080.1 identified by match to protein family HMM PF00535; glycosyl transferase 3874825 423368004079 SNSL254_A3987 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycosyl transferase YP_002042957.1 3873791 R 423368 CDS YP_002042958.1 194443916 complement(3875320..3876345) 1 NC_011080.1 'converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism'; L-threonine 3-dehydrogenase 3876345 tdh 423368004080 tdh Salmonella enterica subsp. enterica serovar Newport str. SL254 L-threonine 3-dehydrogenase YP_002042958.1 3875320 R 423368 CDS YP_002042959.1 194444407 complement(3876355..3877551) 1 NC_011080.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase 3877551 kbl 423368004081 kbl Salmonella enterica subsp. enterica serovar Newport str. SL254 2-amino-3-ketobutyrate CoA ligase YP_002042959.1 3876355 R 423368 CDS YP_002042960.1 194442628 3877754..3878686 1 NC_011080.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3878686 rfaD 423368004082 rfaD Salmonella enterica subsp. enterica serovar Newport str. SL254 ADP-L-glycero-D-manno-heptose-6-epimerase YP_002042960.1 3877754 D 423368 CDS YP_002042961.1 194443073 3878689..3879735 1 NC_011080.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3879735 rfaF 423368004083 rfaF Salmonella enterica subsp. enterica serovar Newport str. SL254 ADP-heptose--LPS heptosyltransferase YP_002042961.1 3878689 D 423368 CDS YP_002042962.1 194446473 3879735..3880688 1 NC_011080.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193; ADP-heptose--LPS heptosyltransferase 3880688 rfaC 423368004084 rfaC Salmonella enterica subsp. enterica serovar Newport str. SL254 ADP-heptose--LPS heptosyltransferase YP_002042962.1 3879735 D 423368 CDS YP_002042963.1 194443618 3880728..3881942 1 NC_011080.1 identified by match to protein family HMM PF04932; O-antigen ligase 3881942 423368004085 SNSL254_A3993 Salmonella enterica subsp. enterica serovar Newport str. SL254 O-antigen ligase YP_002042963.1 3880728 D 423368 CDS YP_002042964.1 194443168 complement(3881999..3883144) 1 NC_011080.1 identified by match to protein family HMM PF00534; lipopolysaccharide 1,2-N-acetylglucosaminetransferase 3883144 423368004086 SNSL254_A3994 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide 1,2-N-acetylglucosaminetransferase YP_002042964.1 3881999 R 423368 CDS YP_002042965.1 194442960 complement(3883244..3884053) 1 NC_011080.1 lipopolysaccharide core biosynthesis protein 3884053 423368004087 SNSL254_A3995 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide core biosynthesis protein YP_002042965.1 3883244 R 423368 CDS YP_002042966.1 194444773 complement(3884203..3884901) 1 NC_011080.1 identified by match to protein family HMM PF06176; lipopolysaccharide core biosynthesis protein 3884901 423368004088 SNSL254_A3996 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide core biosynthesis protein YP_002042966.1 3884203 R 423368 CDS YP_002042967.1 194446313 complement(3884924..3885934) 1 NC_011080.1 identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,2-glucosyltransferase 3885934 423368004089 SNSL254_A3997 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide 1,2-glucosyltransferase YP_002042967.1 3884924 R 423368 CDS YP_002042968.1 194442386 complement(3885952..3886965) 1 NC_011080.1 identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,3-galactosyltransferase 3886965 423368004090 SNSL254_A3998 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide 1,3-galactosyltransferase YP_002042968.1 3885952 R 423368 CDS YP_002042969.1 194444093 complement(3886971..3888050) 1 NC_011080.1 identified by match to protein family HMM PF00534; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 3888050 423368004091 SNSL254_A3999 Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_002042969.1 3886971 R 423368 CDS YP_002042970.1 194445662 complement(3888064..3889044) 1 NC_011080.1 identified by match to protein family HMM PF01501; hypothetical protein 3889044 423368004092 SNSL254_A4000 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042970.1 3888064 R 423368 CDS YP_002042971.1 194442879 complement(3889100..3889897) 1 NC_011080.1 identified by match to protein family HMM PF06293; lipopolysaccharide core biosynthesis protein 3889897 423368004093 SNSL254_A4001 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide core biosynthesis protein YP_002042971.1 3889100 R 423368 CDS YP_002042972.1 194446741 complement(3889890..3891014) 1 NC_011080.1 identified by match to protein family HMM PF00534; lipopolysaccharide core biosynthesis protein RfaG 3891014 423368004094 SNSL254_A4002 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide core biosynthesis protein RfaG YP_002042972.1 3889890 R 423368 CDS YP_002042973.1 194443756 complement(3891011..3892081) 1 NC_011080.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201; lipopolysaccharide core biosynthesis protein 3892081 423368004095 SNSL254_A4003 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide core biosynthesis protein YP_002042973.1 3891011 R 423368 CDS YP_002042974.1 194443187 3892489..3893766 1 NC_011080.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3893766 waaA 423368004096 waaA Salmonella enterica subsp. enterica serovar Newport str. SL254 3-deoxy-D-manno-octulosonic-acid transferase YP_002042974.1 3892489 D 423368 CDS YP_002042975.1 194442711 3893775..3894254 1 NC_011080.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3894254 coaD 423368004097 coaD Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphopantetheine adenylyltransferase YP_002042975.1 3893775 D 423368 CDS YP_002042976.1 194445857 complement(3894282..3895091) 1 NC_011080.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3895091 mutM 423368004098 mutM Salmonella enterica subsp. enterica serovar Newport str. SL254 formamidopyrimidine-DNA glycosylase YP_002042976.1 3894282 R 423368 CDS YP_002042977.1 194442874 complement(3895189..3895356) 1 NC_011080.1 'in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif'; 50S ribosomal protein L33 3895356 rpmG 423368004099 rpmG Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L33 YP_002042977.1 3895189 R 423368 CDS YP_002042978.1 194443533 complement(3895377..3895613) 1 NC_011080.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3895613 rpmB 423368004100 rpmB Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L28 YP_002042978.1 3895377 R 423368 CDS YP_002042979.1 194445201 complement(3895831..3896496) 1 NC_011080.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3896496 radC 423368004101 radC Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA repair protein RadC YP_002042979.1 3895831 R 423368 CDS YP_008083654.1 513538132 3896669..3897892 1 NC_011080.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3897892 coaBC 423368004102 coaBC Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_008083654.1 3896669 D 423368 CDS YP_002042980.1 194444221 3897870..3898328 1 NC_011080.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3898328 dut 423368004103 dut Salmonella enterica subsp. enterica serovar Newport str. SL254 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_002042980.1 3897870 D 423368 CDS YP_002042981.1 194446172 3898436..3899032 1 NC_011080.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3899032 slmA 423368004104 slmA Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoid occlusion protein YP_002042981.1 3898436 D 423368 CDS YP_002042982.1 194444077 complement(3899110..3899751) 1 NC_011080.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3899751 pyrE 423368004105 pyrE Salmonella enterica subsp. enterica serovar Newport str. SL254 orotate phosphoribosyltransferase YP_002042982.1 3899110 R 423368 CDS YP_002042983.1 194442896 complement(3899829..3900545) 1 NC_011080.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3900545 rph 423368004106 rph Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease PH YP_002042983.1 3899829 R 423368 CDS YP_002042984.1 194443236 3900671..3901534 1 NC_011080.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 3901534 423368004107 SNSL254_A4015 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042984.1 3900671 D 423368 CDS YP_002042985.1 194446336 complement(3901584..3902486) 1 NC_011080.1 identified by match to protein family HMM PF00126; LysR family transcriptional regulator 3902486 423368004108 SNSL254_A4016 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family transcriptional regulator YP_002042985.1 3901584 R 423368 CDS YP_002042986.1 194444541 3902560..3903441 1 NC_011080.1 identified by match to protein family HMM PF00753; beta-lactamase 3903441 423368004109 SNSL254_A4017 Salmonella enterica subsp. enterica serovar Newport str. SL254 beta-lactamase YP_002042986.1 3902560 D 423368 CDS YP_002042987.1 194443510 3903692..3904309 1 NC_011080.1 identified by match to protein family HMM PF03458; hypothetical protein 3904309 423368004110 SNSL254_A4018 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042987.1 3903692 D 423368 CDS YP_002042988.1 194445315 complement(3904306..3905991) 1 NC_011080.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 3905991 ligB 423368004111 ligB Salmonella enterica subsp. enterica serovar Newport str. SL254 NAD-dependent DNA ligase LigB YP_002042988.1 3904306 R 423368 CDS YP_002042989.1 194444421 3906248..3906871 1 NC_011080.1 'Essential for recycling GMP and indirectly, cGMP'; guanylate kinase 3906871 gmk 423368004112 gmk Salmonella enterica subsp. enterica serovar Newport str. SL254 guanylate kinase YP_002042989.1 3906248 D 423368 CDS YP_002042990.1 194442643 3906926..3907201 1 NC_011080.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3907201 rpoZ 423368004113 rpoZ Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-directed RNA polymerase subunit omega YP_002042990.1 3906926 D 423368 CDS YP_002042991.1 194445787 3907220..3909331 1 NC_011080.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3909331 423368004114 SNSL254_A4022 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_002042991.1 3907220 D 423368 CDS YP_002042992.1 194444680 3909336..3910025 1 NC_011080.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3910025 trmH 423368004115 trmH Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA guanosine-2'-O-methyltransferase YP_002042992.1 3909336 D 423368 CDS YP_002042993.1 194445167 3910031..3912112 1 NC_011080.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3912112 recG 423368004116 recG Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent DNA helicase RecG YP_002042993.1 3910031 D 423368 CDS YP_002042994.1 194444514 complement(3912115..3912966) 1 NC_011080.1 hypothetical protein 3912966 423368004117 SNSL254_A4025 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002042994.1 3912115 R 423368 CDS YP_002042995.1 194446470 complement(3912969..3914174) 1 NC_011080.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter 3914174 gltS 423368004118 gltS Salmonella enterica subsp. enterica serovar Newport str. SL254 sodium/glutamate symporter YP_002042995.1 3912969 R 423368 CDS YP_002042996.1 194445867 3914402..3915793 1 NC_011080.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil-xanthine permease 3915793 423368004119 SNSL254_A4027 Salmonella enterica subsp. enterica serovar Newport str. SL254 uracil-xanthine permease YP_002042996.1 3914402 D 423368 CDS YP_002042997.1 194443143 3915914..3917623 1 NC_011080.1 identified by match to protein family HMM PF05170; AsmA family protein 3917623 423368004120 SNSL254_A4028 Salmonella enterica subsp. enterica serovar Newport str. SL254 AsmA family protein YP_002042997.1 3915914 D 423368 CDS YP_002042998.1 194442737 complement(3917726..3920044) 1 NC_011080.1 'catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides'; alpha-xylosidase 3920044 423368004121 SNSL254_A4029 Salmonella enterica subsp. enterica serovar Newport str. SL254 alpha-xylosidase YP_002042998.1 3917726 R 423368 CDS YP_002042999.1 194444395 complement(3920056..3921438) 1 NC_011080.1 may be involved in the transport of galactosides-pentoses-hexuronides; transporter 3921438 423368004122 SNSL254_A4030 Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_002042999.1 3920056 R 423368 CDS YP_002043000.1 194444053 3922085..3922225 1 NC_011080.1 hypothetical protein 3922225 423368004124 SNSL254_A4032 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043000.1 3922085 D 423368 CDS YP_002043001.1 194443357 3922576..3922734 1 NC_011080.1 hypothetical protein 3922734 423368004125 SNSL254_A4033 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043001.1 3922576 D 423368 CDS YP_002043002.1 194444260 3923442..3924059 1 NC_011080.1 hypothetical protein 3924059 423368004126 SNSL254_A4034 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043002.1 3923442 D 423368 CDS YP_008083655.1 513538133 3924134..3927001 1 NC_011080.1 autotransporter MisL 3927001 423368004127 SNSL254_A4035 Salmonella enterica subsp. enterica serovar Newport str. SL254 autotransporter MisL YP_008083655.1 3924134 D 423368 CDS YP_002043003.1 194445854 complement(3927096..3927578) 1 NC_011080.1 hypothetical protein 3927578 423368004128 SNSL254_A4036 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043003.1 3927096 R 423368 CDS YP_002043004.1 194446068 complement(3927571..3928335) 1 NC_011080.1 identified by match to protein family HMM PF00486; transcriptional regulator C 3928335 423368004129 SNSL254_A4037 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator C YP_002043004.1 3927571 R 423368 CDS YP_002043005.1 194444509 3929033..3929158 1 NC_011080.1 identified by glimmer; hypothetical protein 3929158 423368004130 SNSL254_A4038 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043005.1 3929033 D 423368 CDS YP_002043006.1 194445327 3929213..3929893 1 NC_011080.1 identified by match to protein family HMM PF00857; hypothetical protein 3929893 423368004131 SNSL254_A4039 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043006.1 3929213 D 423368 CDS YP_002043007.1 194443903 complement(3930122..3930649) 1 NC_011080.1 hypothetical protein 3930649 423368004132 SNSL254_A4040 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043007.1 3930122 R 423368 CDS YP_002043008.1 194444476 complement(3930916..3933642) 1 NC_011080.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 3933642 mgtA 423368004133 mgtA Salmonella enterica subsp. enterica serovar Newport str. SL254 magnesium-translocating P-type ATPase YP_002043008.1 3930916 R 423368 CDS YP_002043010.1 194443148 complement(3933862..3934539) 1 NC_011080.1 identified by match to protein family HMM PF02308; Mg(2+) transport ATPase protein C 3934539 423368004134 SNSL254_A4043 Salmonella enterica subsp. enterica serovar Newport str. SL254 Mg(2+) transport ATPase protein C YP_002043010.1 3933862 R 423368 CDS YP_002043011.1 194446093 3935018..3935965 1 NC_011080.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00950; carboxylate/amino acid/amine transporter 3935965 423368004135 SNSL254_A4044 Salmonella enterica subsp. enterica serovar Newport str. SL254 carboxylate/amino acid/amine transporter YP_002043011.1 3935018 D 423368 CDS YP_002043012.1 194446756 complement(3936008..3936937) 1 NC_011080.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 3936937 423368004136 SNSL254_A4045 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043012.1 3936008 R 423368 CDS YP_002043013.1 194444004 complement(3937174..3937917) 1 NC_011080.1 identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581; hypothetical protein 3937917 423368004137 SNSL254_A4046 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043013.1 3937174 R 423368 CDS YP_002043014.1 194442402 complement(3937904..3939013) 1 NC_011080.1 identified by match to protein family HMM PF03841; match to protein family HMM TIGR01437; pyridoxal phosphate-dependent enzyme 3939013 423368004138 SNSL254_A4047 Salmonella enterica subsp. enterica serovar Newport str. SL254 pyridoxal phosphate-dependent enzyme YP_002043014.1 3937904 R 423368 CDS YP_002043015.1 194444832 complement(3939017..3939877) 1 NC_011080.1 identified by match to protein family HMM PF03613; PTS system mannose/fructose/sorbose family transporter subunit IID 3939877 423368004139 SNSL254_A4048 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system mannose/fructose/sorbose family transporter subunit IID YP_002043015.1 3939017 R 423368 CDS YP_002043016.1 194445489 complement(3939874..3940623) 1 NC_011080.1 identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC 3940623 423368004140 SNSL254_A4049 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system sorbose-specific transporter subunit IIC YP_002043016.1 3939874 R 423368 CDS YP_002043017.1 194446614 complement(3940769..3941254) 1 NC_011080.1 identified by match to protein family HMM PF03830; PTS system sorbose subfamily transporter subunit IIB 3941254 423368004141 SNSL254_A4050 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system sorbose subfamily transporter subunit IIB YP_002043017.1 3940769 R 423368 CDS YP_002043018.1 194444924 complement(3941265..3941690) 1 NC_011080.1 identified by match to protein family HMM PF03610; PTS system fructose-specific transporter subunit IIA 3941690 423368004142 SNSL254_A4051 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system fructose-specific transporter subunit IIA YP_002043018.1 3941265 R 423368 CDS YP_002043019.1 194443050 complement(3941909..3944707) 1 NC_011080.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF07728; sigma-54 dependent transcription regulator 3944707 423368004143 SNSL254_A4052 Salmonella enterica subsp. enterica serovar Newport str. SL254 sigma-54 dependent transcription regulator YP_002043019.1 3941909 R 423368 CDS YP_002043020.1 194445850 3944904..3945197 1 NC_011080.1 hypothetical protein 3945197 423368004144 SNSL254_A4053 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043020.1 3944904 D 423368 CDS YP_002043021.1 194445775 3945182..3945325 1 NC_011080.1 identified by glimmer; hypothetical protein 3945325 423368004145 SNSL254_A4054 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043021.1 3945182 D 423368 CDS YP_002043022.1 194446382 3945303..3946685 1 NC_011080.1 identified by match to protein family HMM PF00232; beta-glucosidase 3946685 423368004146 SNSL254_A4055 Salmonella enterica subsp. enterica serovar Newport str. SL254 beta-glucosidase YP_002043022.1 3945303 D 423368 CDS YP_008083656.1 513538134 complement(3946745..3947938) 1 NC_011080.1 purine ribonucleoside efflux pump NepI 3947938 423368004147 SNSL254_A4056 Salmonella enterica subsp. enterica serovar Newport str. SL254 purine ribonucleoside efflux pump NepI YP_008083656.1 3946745 R 423368 CDS YP_002043023.1 194443981 3948154..3948513 1 NC_011080.1 identified by match to protein family HMM PF06296; hypothetical protein 3948513 423368004148 SNSL254_A4057 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043023.1 3948154 D 423368 CDS YP_002043024.1 194444214 3948497..3948820 1 NC_011080.1 identified by match to protein family HMM PF01381; DNA-binding protein 3948820 423368004149 SNSL254_A4058 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding protein YP_002043024.1 3948497 D 423368 CDS YP_002043025.1 194443838 complement(3949812..3949925) 1 NC_011080.1 hypothetical protein 3949925 423368004150 SNSL254_A4059 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043025.1 3949812 R 423368 CDS YP_002043026.1 194444723 complement(3950135..3950404) 1 NC_011080.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system HPr enzyme 3950404 423368004151 SNSL254_A4060 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system HPr enzyme YP_002043026.1 3950135 R 423368 CDS YP_002043027.1 194446546 complement(3950414..3951274) 1 NC_011080.1 'class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis'; fructose-1,6-bisphosphate aldolase 3951274 gatY 423368004152 gatY Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose-1,6-bisphosphate aldolase YP_002043027.1 3950414 R 423368 CDS YP_002043028.1 194445764 complement(3951337..3952821) 1 NC_011080.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; carbohydrate kinase FGGY family protein 3952821 423368004153 SNSL254_A4062 Salmonella enterica subsp. enterica serovar Newport str. SL254 carbohydrate kinase FGGY family protein YP_002043028.1 3951337 R 423368 CDS YP_002043029.1 194442822 complement(3952814..3954172) 1 NC_011080.1 identified by match to protein family HMM PF03611; PTS system galactitol-specific transporter subunit IIC 3954172 423368004154 SNSL254_A4063 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system galactitol-specific transporter subunit IIC YP_002043029.1 3952814 R 423368 CDS YP_002043030.1 194444010 complement(3954248..3954535) 1 NC_011080.1 PTS system transporter subunit IIB 3954535 423368004155 SNSL254_A4064 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system transporter subunit IIB YP_002043030.1 3954248 R 423368 CDS YP_002043031.1 194444952 complement(3954532..3955005) 1 NC_011080.1 identified by match to protein family HMM PF00359; PTS system mannitol/fructose-specific transporter subunit IIA 3955005 423368004156 SNSL254_A4065 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system mannitol/fructose-specific transporter subunit IIA YP_002043031.1 3954532 R 423368 CDS YP_002043032.1 194443592 complement(3955023..3955766) 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 3955766 423368004157 SNSL254_A4066 Salmonella enterica subsp. enterica serovar Newport str. SL254 GntR family transcriptional regulator YP_002043032.1 3955023 R 423368 CDS YP_002043033.1 194442834 complement(3956119..3956571) 1 NC_011080.1 identified by match to protein family HMM PF06711; hypothetical protein 3956571 423368004158 SNSL254_A4067 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043033.1 3956119 R 423368 CDS YP_002043034.1 194444975 complement(3956764..3958155) 1 NC_011080.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 3958155 uhpT 423368004159 uhpT Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar phosphate antiporter YP_002043034.1 3956764 R 423368 CDS YP_002043035.1 194444020 complement(3958298..3959626) 1 NC_011080.1 membrane protein regulates uhpT expression; regulatory protein UhpC 3959626 423368004160 SNSL254_A4069 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein UhpC YP_002043035.1 3958298 R 423368 CDS YP_002043036.1 194445392 complement(3959636..3961138) 1 NC_011080.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB 3961138 423368004161 SNSL254_A4070 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensory histidine kinase UhpB YP_002043036.1 3959636 R 423368 CDS YP_002043037.1 194445001 complement(3961138..3961728) 1 NC_011080.1 'response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter'; DNA-binding transcriptional activator UhpA 3961728 uhpA 423368004162 uhpA Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator UhpA YP_002043037.1 3961138 R 423368 CDS YP_002043038.1 194442371 complement(3961803..3962816) 1 NC_011080.1 DeoX 3962816 423368004163 SNSL254_A4072 Salmonella enterica subsp. enterica serovar Newport str. SL254 DeoX YP_002043038.1 3961803 R 423368 CDS YP_002043039.1 194446056 complement(3962828..3964144) 1 NC_011080.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose:H+ symporter permease 3964144 fucP 423368004164 fucP Salmonella enterica subsp. enterica serovar Newport str. SL254 L-fucose:H+ symporter permease YP_002043039.1 3962828 R 423368 CDS YP_002043040.1 194443725 complement(3964175..3965095) 1 NC_011080.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase 3965095 rbsK 423368004165 rbsK Salmonella enterica subsp. enterica serovar Newport str. SL254 ribokinase YP_002043040.1 3964175 R 423368 CDS YP_002043041.1 194444647 3965420..3966205 1 NC_011080.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; deoxyribose operon repressor 3966205 423368004166 SNSL254_A4075 Salmonella enterica subsp. enterica serovar Newport str. SL254 deoxyribose operon repressor YP_002043041.1 3965420 D 423368 CDS YP_002043042.1 194446400 complement(3966207..3966497) 1 NC_011080.1 'with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit'; acetolactate synthase 1 regulatory subunit 3966497 ilvN 423368004167 ilvN Salmonella enterica subsp. enterica serovar Newport str. SL254 acetolactate synthase 1 regulatory subunit YP_002043042.1 3966207 R 423368 CDS YP_002043043.1 194442329 complement(3966501..3968189) 1 NC_011080.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase catalytic subunit 3968189 ilvB 423368004168 ilvB Salmonella enterica subsp. enterica serovar Newport str. SL254 acetolactate synthase catalytic subunit YP_002043043.1 3966501 R 423368 CDS YP_002043044.1 194445333 3969210..3970070 1 NC_011080.1 identified by match to protein family HMM PF00892; hypothetical protein 3970070 423368004169 SNSL254_A4078 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043044.1 3969210 D 423368 CDS YP_002043045.1 194445701 3970273..3971457 1 NC_011080.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 3971457 emrD 423368004170 emrD Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug resistance protein D YP_002043045.1 3970273 D 423368 CDS YP_002043046.1 194444562 complement(3972533..3973456) 1 NC_011080.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 3973456 dsdC 423368004171 dsdC Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator DsdC YP_002043046.1 3972533 R 423368 CDS YP_002043047.1 194444925 3973682..3975019 1 NC_011080.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 3975019 423368004172 SNSL254_A4081 Salmonella enterica subsp. enterica serovar Newport str. SL254 permease DsdX YP_002043047.1 3973682 D 423368 CDS YP_002043048.1 194443261 3975037..3976359 1 NC_011080.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 3976359 dsdA 423368004173 dsdA Salmonella enterica subsp. enterica serovar Newport str. SL254 D-serine dehydratase YP_002043048.1 3975037 D 423368 CDS YP_002043049.1 194443638 3976325..3976438 1 NC_011080.1 identified by glimmer; hypothetical protein 3976438 423368004174 SNSL254_A4083 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043049.1 3976325 D 423368 CDS YP_002043050.1 194442752 complement(3976441..3976971) 1 NC_011080.1 hypothetical protein 3976971 423368004175 SNSL254_A4084 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043050.1 3976441 R 423368 CDS YP_002043051.1 194446575 complement(3976968..3977330) 1 NC_011080.1 hypothetical protein 3977330 423368004176 SNSL254_A4085 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043051.1 3976968 R 423368 CDS YP_002043052.1 194442581 complement(3977320..3977667) 1 NC_011080.1 identified by match to protein family HMM PF02656; hypothetical protein 3977667 423368004177 SNSL254_A4086 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043052.1 3977320 R 423368 CDS YP_002043053.1 194446735 complement(3977687..3977821) 1 NC_011080.1 identified by glimmer; hypothetical protein 3977821 423368004178 SNSL254_A4087 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043053.1 3977687 R 423368 CDS YP_002043054.1 194444088 3977821..3977949 1 NC_011080.1 identified by glimmer; hypothetical protein 3977949 423368004179 SNSL254_A4088 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043054.1 3977821 D 423368 CDS YP_002043055.1 194443413 complement(3978111..3979772) 1 NC_011080.1 identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein 3979772 423368004180 SNSL254_A4089 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043055.1 3978111 R 423368 CDS YP_002043056.1 194445105 complement(3979961..3980389) 1 NC_011080.1 '16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent'; heat shock chaperone IbpB 3980389 ibpB 423368004181 ibpB Salmonella enterica subsp. enterica serovar Newport str. SL254 heat shock chaperone IbpB YP_002043056.1 3979961 R 423368 CDS YP_002043057.1 194445029 complement(3980499..3980918) 1 NC_011080.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA 3980918 ibpA 423368004182 ibpA Salmonella enterica subsp. enterica serovar Newport str. SL254 heat shock protein IbpA YP_002043057.1 3980499 R 423368 CDS YP_002043058.1 194446693 complement(3981176..3981295) 1 NC_011080.1 hypothetical protein 3981295 423368004183 SNSL254_A4093 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043058.1 3981176 R 423368 CDS YP_002043059.1 194446002 3981294..3981554 1 NC_011080.1 identified by match to protein family HMM PF07119; hypothetical protein 3981554 423368004184 SNSL254_A4092 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043059.1 3981294 D 423368 CDS YP_008083657.1 513538135 complement(3981556..3982782) 1 NC_011080.1 hypothetical protein 3982782 423368004185 SNSL254_A4094 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_008083657.1 3981556 R 423368 CDS YP_002043060.1 194444442 complement(3982904..3983947) 1 NC_011080.1 identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 3983947 423368004186 SNSL254_A4095 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c-type biogenesis protein H2 YP_002043060.1 3982904 R 423368 CDS YP_002043061.1 194443791 complement(3983944..3984501) 1 NC_011080.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interchange protein DsbE 3984501 423368004187 SNSL254_A4096 Salmonella enterica subsp. enterica serovar Newport str. SL254 thiol:disulfide interchange protein DsbE YP_002043061.1 3983944 R 423368 CDS YP_002043062.1 194443391 complement(3984498..3986429) 1 NC_011080.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF 3986429 ccmF 423368004188 ccmF Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c-type biogenesis protein CcmF YP_002043062.1 3984498 R 423368 CDS YP_002043063.1 194446249 complement(3986426..3986905) 1 NC_011080.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 3986905 423368004189 SNSL254_A4098 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c-type biogenesis protein CcmE YP_002043063.1 3986426 R 423368 CDS YP_002043064.1 194444660 complement(3986902..3987114) 1 NC_011080.1 identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; hypothetical protein 3987114 423368004190 SNSL254_A4099 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043064.1 3986902 R 423368 CDS YP_002043065.1 194442529 complement(3987111..3987857) 1 NC_011080.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC superfamily protein 3987857 423368004191 SNSL254_A4100 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC superfamily protein YP_002043065.1 3987111 R 423368 CDS YP_002043066.1 194446509 complement(3987900..3988559) 1 NC_011080.1 identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB 3988559 ccmB 423368004192 ccmB Salmonella enterica subsp. enterica serovar Newport str. SL254 heme exporter protein CcmB YP_002043066.1 3987900 R 423368 CDS YP_002043067.1 194443506 complement(3988556..3989182) 1 NC_011080.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 3989182 ccmA 423368004193 ccmA Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c biogenesis protein CcmA YP_002043067.1 3988556 R 423368 CDS YP_002043068.1 194442891 complement(3989179..3990579) 1 NC_011080.1 identified by match to protein family HMM PF03150; cytochrome-c peroxidase 3990579 423368004194 SNSL254_A4103 Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome-c peroxidase YP_002043068.1 3989179 R 423368 CDS YP_002043069.1 194446436 complement(3990769..3991401) 1 NC_011080.1 'TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor'; chaperone protein TorD 3991401 torD 423368004195 torD Salmonella enterica subsp. enterica serovar Newport str. SL254 chaperone protein TorD YP_002043069.1 3990769 R 423368 CDS YP_002043070.1 194445956 complement(3991394..3993946) 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; match to protein family HMM TIGR01409; match to protein family HMM TIGR02164; trimethylamine-N-oxide reductase TorA 3993946 torA 423368004196 torA Salmonella enterica subsp. enterica serovar Newport str. SL254 trimethylamine-N-oxide reductase TorA YP_002043070.1 3991394 R 423368 CDS YP_002043071.1 194444473 complement(3993936..3995120) 1 NC_011080.1 identified by match to protein family HMM PF03264; match to protein family HMM TIGR02162; trimethylamine-N-oxide reductase c-type cytochrome TorC 3995120 torC 423368004197 torC Salmonella enterica subsp. enterica serovar Newport str. SL254 trimethylamine-N-oxide reductase c-type cytochrome TorC YP_002043071.1 3993936 R 423368 CDS YP_002043072.1 194445099 3995214..3995942 1 NC_011080.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 3995942 423368004198 SNSL254_A4107 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator TorR YP_002043072.1 3995214 D 423368 CDS YP_002043073.1 194443673 complement(3995915..3996955) 1 NC_011080.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 3996955 torT 423368004199 torT Salmonella enterica subsp. enterica serovar Newport str. SL254 TMAO reductase system periplasmic protein TorT YP_002043073.1 3995915 R 423368 CDS YP_002043075.1 194444775 3997083..3999770 1 NC_011080.1 Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 3999770 torS 423368004200 torS Salmonella enterica subsp. enterica serovar Newport str. SL254 hybrid sensory histidine kinase TorS YP_002043075.1 3997083 D 423368 CDS YP_002043076.1 194446316 complement(3999796..4001094) 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00881; match to protein family HMM TIGR00893; d-galactonate transporter 4001094 423368004201 SNSL254_A4111 Salmonella enterica subsp. enterica serovar Newport str. SL254 d-galactonate transporter YP_002043076.1 3999796 R 423368 CDS YP_002043077.1 194443079 complement(4001218..4002366) 1 NC_011080.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; galactonate dehydratase 4002366 423368004202 SNSL254_A4112 Salmonella enterica subsp. enterica serovar Newport str. SL254 galactonate dehydratase YP_002043077.1 4001218 R 423368 CDS YP_002043078.1 194442591 complement(4002363..4002980) 1 NC_011080.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 4002980 423368004203 SNSL254_A4113 Salmonella enterica subsp. enterica serovar Newport str. SL254 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_002043078.1 4002363 R 423368 CDS YP_002043079.1 194442748 complement(4002964..4003842) 1 NC_011080.1 identified by match to protein family HMM PF05035; 2-dehydro-3-deoxygalactonokinase 4003842 423368004204 SNSL254_A4114 Salmonella enterica subsp. enterica serovar Newport str. SL254 2-dehydro-3-deoxygalactonokinase YP_002043079.1 4002964 R 423368 CDS YP_002043080.1 194443219 complement(4003839..4004528) 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; galactonate operon transcriptional repressor 4004528 dgoR 423368004205 dgoR Salmonella enterica subsp. enterica serovar Newport str. SL254 galactonate operon transcriptional repressor YP_002043080.1 4003839 R 423368 CDS YP_002043081.1 194445079 complement(4004789..4005634) 1 NC_011080.1 'YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins'; sugar phosphatase 4005634 423368004206 SNSL254_A4116 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar phosphatase YP_002043081.1 4004789 R 423368 CDS YP_002043082.1 194445607 4005939..4007201 1 NC_011080.1 identified by match to protein family HMM PF07690; permease 4007201 423368004207 SNSL254_A4117 Salmonella enterica subsp. enterica serovar Newport str. SL254 permease YP_002043082.1 4005939 D 423368 CDS YP_002043083.1 194446418 4007218..4008408 1 NC_011080.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein 4008408 423368004208 SNSL254_A4118 Salmonella enterica subsp. enterica serovar Newport str. SL254 mandelate racemase/muconate lactonizing protein YP_002043083.1 4007218 D 423368 CDS YP_002043084.1 194446609 4008523..4009419 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 4009419 423368004209 SNSL254_A4119 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002043084.1 4008523 D 423368 CDS YP_002043085.1 194442844 complement(4009438..4011852) 1 NC_011080.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4011852 gyrB 423368004210 gyrB Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA gyrase subunit B YP_002043085.1 4009438 R 423368 CDS YP_002043086.1 194445873 complement(4011881..4012954) 1 NC_011080.1 'Required for DNA replication; binds preferentially to single-stranded, linear DNA'; recombination protein F 4012954 recF 423368004211 recF Salmonella enterica subsp. enterica serovar Newport str. SL254 recombination protein F YP_002043086.1 4011881 R 423368 CDS YP_002043087.1 194444384 complement(4013102..4014202) 1 NC_011080.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 4014202 dnaN 423368004212 dnaN Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase III subunit beta YP_002043087.1 4013102 R 423368 CDS YP_002043088.1 194442253 complement(4014207..4015607) 1 NC_011080.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4015607 dnaA 423368004213 dnaA Salmonella enterica subsp. enterica serovar Newport str. SL254 chromosomal replication initiation protein YP_002043088.1 4014207 R 423368 CDS YP_002043089.1 194442259 4016268..4016408 1 NC_011080.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4016408 rpmH 423368004214 rpmH Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L34 YP_002043089.1 4016268 D 423368 CDS YP_002043090.1 194442892 4016425..4016784 1 NC_011080.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4016784 rnpA 423368004215 rnpA Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease P YP_002043090.1 4016425 D 423368 CDS YP_002043091.1 194446373 4017008..4018654 1 NC_011080.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 4018654 423368004216 SNSL254_A4126 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane protein translocase component YidC YP_002043091.1 4017008 D 423368 CDS YP_002043092.1 194444972 4018796..4020160 1 NC_011080.1 'in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE'; tRNA modification GTPase TrmE 4020160 trmE 423368004217 trmE Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA modification GTPase TrmE YP_002043092.1 4018796 D 423368 CDS YP_002043093.1 194445594 4020343..4021530 1 NC_011080.1 Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 4021530 423368004218 SNSL254_A4128 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug efflux system protein MdtL YP_002043093.1 4020343 D 423368 CDS YP_002043094.1 194443623 4021499..4022458 1 NC_011080.1 Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 4022458 423368004219 SNSL254_A4129 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator YidZ YP_002043094.1 4021499 D 423368 CDS YP_002043095.1 194442638 4022616..4023371 1 NC_011080.1 hypothetical protein 4023371 423368004220 SNSL254_A4130 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043095.1 4022616 D 423368 CDS YP_002043096.1 194442432 4023389..4023955 1 NC_011080.1 identified by match to protein family HMM PF03358; hypothetical protein 4023955 423368004221 SNSL254_A4131 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043096.1 4023389 D 423368 CDS YP_002043097.1 194442949 complement(4024000..4025337) 1 NC_011080.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; hypothetical protein 4025337 423368004222 SNSL254_A4132 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043097.1 4024000 R 423368 CDS YP_002043098.1 194445910 4025506..4026171 1 NC_011080.1 'YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily'; 6-phosphogluconate phosphatase 4026171 423368004223 SNSL254_A4133 Salmonella enterica subsp. enterica serovar Newport str. SL254 6-phosphogluconate phosphatase YP_002043098.1 4025506 D 423368 CDS YP_002043099.1 194445602 complement(4026266..4026991) 1 NC_011080.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 4026991 phoU 423368004224 phoU Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator PhoU YP_002043099.1 4026266 R 423368 CDS YP_002043100.1 194445946 complement(4027006..4027815) 1 NC_011080.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 4027815 pstB 423368004225 pstB Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphate transporter ATP-binding protein YP_002043100.1 4027006 R 423368 CDS YP_002043101.1 194446726 complement(4027866..4028756) 1 NC_011080.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 4028756 pstA 423368004226 pstA Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphate transporter permease subunit PtsA YP_002043101.1 4027866 R 423368 CDS YP_002043102.1 194444007 complement(4028756..4029715) 1 NC_011080.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 4029715 pstC 423368004227 pstC Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphate transporter permease subunit PstC YP_002043102.1 4028756 R 423368 CDS YP_002043103.1 194443508 complement(4029851..4030891) 1 NC_011080.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein 4030891 pstS 423368004228 pstS Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphate ABC transporter substrate-binding protein YP_002043103.1 4029851 R 423368 CDS YP_002043104.1 194442712 complement(4031057..4032430) 1 NC_011080.1 identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427; PTS system D-fructose-specific transporter subunit IIBC 4032430 423368004229 SNSL254_A4139 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system D-fructose-specific transporter subunit IIBC YP_002043104.1 4031057 R 423368 CDS YP_002043105.1 194442316 complement(4032479..4033297) 1 NC_011080.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4033297 423368004230 SNSL254_A4140 Salmonella enterica subsp. enterica serovar Newport str. SL254 shikimate 5-dehydrogenase YP_002043105.1 4032479 R 423368 CDS YP_002043106.1 194446062 4033359..4035149 1 NC_011080.1 identified by match to protein family HMM PF00496; HTH-type transcriptional regulator SgrR 4035149 423368004231 SNSL254_A4141 Salmonella enterica subsp. enterica serovar Newport str. SL254 HTH-type transcriptional regulator SgrR YP_002043106.1 4033359 D 423368 CDS YP_002043107.1 194445549 complement(4035300..4037129) 1 NC_011080.1 'Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source'; glucosamine--fructose-6-phosphate aminotransferase 4037129 glmS 423368004232 glmS Salmonella enterica subsp. enterica serovar Newport str. SL254 glucosamine--fructose-6-phosphate aminotransferase YP_002043107.1 4035300 R 423368 CDS YP_002043108.1 194444740 complement(4037318..4038688) 1 NC_011080.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4038688 glmU 423368004233 glmU Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_002043108.1 4037318 R 423368 CDS YP_002043109.1 194445861 complement(4039008..4039706) 1 NC_011080.1 permease 4039706 423368004234 SNSL254_A4144 Salmonella enterica subsp. enterica serovar Newport str. SL254 permease YP_002043109.1 4039008 R 423368 CDS YP_002043110.1 194444185 complement(4039936..4040355) 1 NC_011080.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 4040355 atpC 423368004235 atpC Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP synthase F0F1 subunit epsilon YP_002043110.1 4039936 R 423368 CDS YP_002043111.1 194444846 complement(4040376..4041758) 1 NC_011080.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 4041758 atpD 423368004236 atpD Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP synthase F0F1 subunit beta YP_002043111.1 4040376 R 423368 CDS YP_002043112.1 194446815 complement(4041785..4042648) 1 NC_011080.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 4042648 atpG 423368004237 atpG Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP synthase F0F1 subunit gamma YP_002043112.1 4041785 R 423368 CDS YP_002043113.1 194442810 complement(4042699..4044240) 1 NC_011080.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 4044240 atpA 423368004238 atpA Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP synthase F0F1 subunit alpha YP_002043113.1 4042699 R 423368 CDS YP_002043114.1 194445487 complement(4044253..4044786) 1 NC_011080.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 4044786 atpH 423368004239 atpH Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP synthase F0F1 subunit delta YP_002043114.1 4044253 R 423368 CDS YP_002043115.1 194444961 complement(4044801..4045271) 1 NC_011080.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 4045271 atpF 423368004240 atpF Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP synthase F0F1 subunit B YP_002043115.1 4044801 R 423368 CDS YP_002043116.1 194444120 complement(4045331..4045570) 1 NC_011080.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 4045570 atpE 423368004241 atpE Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP synthase F0F1 subunit C YP_002043116.1 4045331 R 423368 CDS YP_002043117.1 194443627 complement(4045617..4046432) 1 NC_011080.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 4046432 atpB 423368004242 atpB Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP synthase F0F1 subunit A YP_002043117.1 4045617 R 423368 CDS YP_002043118.2 448967558 complement(4046441..4046821) 1 NC_011080.1 identified by match to protein family HMM PF03899; F0F1 ATP synthase subunit I 4046821 atpI 423368004243 atpI Salmonella enterica subsp. enterica serovar Newport str. SL254 F0F1 ATP synthase subunit I YP_002043118.2 4046441 R 423368 CDS YP_002043119.1 194444649 complement(4046936..4047079) 1 NC_011080.1 hypothetical protein 4047079 423368004244 SNSL254_A4154 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043119.1 4046936 R 423368 CDS YP_002043120.1 194442829 complement(4047187..4047324) 1 NC_011080.1 identified by glimmer; hypothetical protein 4047324 423368004245 SNSL254_A4155 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043120.1 4047187 R 423368 CDS YP_002043121.1 194443339 complement(4047437..4048060) 1 NC_011080.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4048060 gidB 423368004246 gidB Salmonella enterica subsp. enterica serovar Newport str. SL254 16S rRNA methyltransferase GidB YP_002043121.1 4047437 R 423368 CDS YP_002043122.1 194445542 complement(4048163..4050052) 1 NC_011080.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4050052 gidA 423368004247 gidA Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_002043122.1 4048163 R 423368 CDS YP_002043123.1 194446007 complement(4050431..4050874) 1 NC_011080.1 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin 4050874 mioC 423368004248 mioC Salmonella enterica subsp. enterica serovar Newport str. SL254 flavodoxin YP_002043123.1 4050431 R 423368 CDS YP_002043124.1 194444346 complement(4050964..4051422) 1 NC_011080.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 4051422 asnC 423368004249 asnC Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator AsnC YP_002043124.1 4050964 R 423368 CDS YP_002043125.1 194444112 4051573..4052565 1 NC_011080.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4052565 asnA 423368004250 asnA Salmonella enterica subsp. enterica serovar Newport str. SL254 asparagine synthetase AsnA YP_002043125.1 4051573 D 423368 CDS YP_002043126.1 194442438 complement(4052570..4054021) 1 NC_011080.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 4054021 yieM 423368004251 yieM Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043126.1 4052570 R 423368 CDS YP_002043127.1 194442906 complement(4054015..4055511) 1 NC_011080.1 'interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase'; regulatory ATPase RavA 4055511 423368004252 SNSL254_A4162 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory ATPase RavA YP_002043127.1 4054015 R 423368 CDS YP_002043128.1 194446162 4055859..4057727 1 NC_011080.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4057727 trkD 423368004253 trkD Salmonella enterica subsp. enterica serovar Newport str. SL254 potassium transport protein Kup YP_002043128.1 4055859 D 423368 CDS YP_002043129.1 194442938 4057944..4058363 1 NC_011080.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4058363 rbsD 423368004254 rbsD Salmonella enterica subsp. enterica serovar Newport str. SL254 D-ribose pyranase YP_002043129.1 4057944 D 423368 CDS YP_002043130.1 194445619 4058371..4059876 1 NC_011080.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 4059876 rbsA 423368004255 rbsA Salmonella enterica subsp. enterica serovar Newport str. SL254 D-ribose transporter ATP-binding protein YP_002043130.1 4058371 D 423368 CDS YP_002043131.1 194446074 4059882..4060847 1 NC_011080.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4060847 rbsC 423368004256 rbsC Salmonella enterica subsp. enterica serovar Newport str. SL254 ribose ABC transporter permease YP_002043131.1 4059882 D 423368 CDS YP_002043132.1 194443386 4060872..4061762 1 NC_011080.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4061762 rbsB 423368004257 rbsB Salmonella enterica subsp. enterica serovar Newport str. SL254 D-ribose transporter subunit RbsB YP_002043132.1 4060872 D 423368 CDS YP_002043133.1 194444057 4061895..4062824 1 NC_011080.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4062824 rbsK 423368004258 rbsK Salmonella enterica subsp. enterica serovar Newport str. SL254 ribokinase YP_002043133.1 4061895 D 423368 CDS YP_002043134.1 194443040 4062828..4063826 1 NC_011080.1 DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4063826 423368004259 SNSL254_A4169 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional repressor RbsR YP_002043134.1 4062828 D 423368 CDS YP_002043135.1 194442388 complement(4063792..4065219) 1 NC_011080.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; inner membrane transport protein YieO 4065219 423368004260 SNSL254_A4170 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transport protein YieO YP_002043135.1 4063792 R 423368 CDS YP_002043136.1 194446035 complement(4065231..4065935) 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 4065935 423368004261 SNSL254_A4171 Salmonella enterica subsp. enterica serovar Newport str. SL254 GntR family transcriptional regulator YP_002043136.1 4065231 R 423368 CDS YP_002043137.1 194444610 complement(4071839..4072675) 1 NC_011080.1 Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR 4072675 hdfR 423368004268 hdfR Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator HdfR YP_002043137.1 4071839 R 423368 CDS YP_002043138.1 194446588 4072794..4073132 1 NC_011080.1 identified by match to protein family HMM PF04219; hypothetical protein 4073132 423368004269 SNSL254_A4181 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043138.1 4072794 D 423368 CDS YP_002043139.1 194445964 complement(4073157..4074677) 1 NC_011080.1 'among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function'; ATP-dependent protease 4074677 423368004270 SNSL254_A4182 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent protease YP_002043139.1 4073157 R 423368 CDS YP_002043140.1 194446682 4075267..4076913 1 NC_011080.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4076913 ilvG 423368004271 ilvG Salmonella enterica subsp. enterica serovar Newport str. SL254 acetolactate synthase 2 catalytic subunit YP_002043140.1 4075267 D 423368 CDS YP_002043141.1 194446229 4076910..4077173 1 NC_011080.1 acetolactate synthase 2 regulatory subunit 4077173 ilvM 423368004272 ilvM Salmonella enterica subsp. enterica serovar Newport str. SL254 acetolactate synthase 2 regulatory subunit YP_002043141.1 4076910 D 423368 CDS YP_002043142.1 194443358 4077191..4078120 1 NC_011080.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4078120 ilvE 423368004273 ilvE Salmonella enterica subsp. enterica serovar Newport str. SL254 branched-chain amino acid aminotransferase YP_002043142.1 4077191 D 423368 CDS YP_002043143.1 194442868 4078280..4080130 1 NC_011080.1 'catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis'; dihydroxy-acid dehydratase 4080130 ilvD 423368004274 ilvD Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydroxy-acid dehydratase YP_002043143.1 4078280 D 423368 CDS YP_002043144.1 194444883 4080133..4081677 1 NC_011080.1 'threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway'; threonine dehydratase 4081677 ilvA 423368004275 ilvA Salmonella enterica subsp. enterica serovar Newport str. SL254 threonine dehydratase YP_002043144.1 4080133 D 423368 CDS YP_002043145.1 194444115 4081960..4082277 1 NC_011080.1 identified by match to protein family HMM PF05973; hypothetical protein 4082277 423368004276 SNSL254_A4188 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043145.1 4081960 D 423368 CDS YP_002043146.1 194446197 4082274..4082615 1 NC_011080.1 XRE family transcriptional regulator 4082615 423368004277 SNSL254_A4189 Salmonella enterica subsp. enterica serovar Newport str. SL254 XRE family transcriptional regulator YP_002043146.1 4082274 D 423368 CDS YP_002043147.1 194444871 complement(4082618..4083505) 1 NC_011080.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4083505 423368004278 SNSL254_A4190 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator IlvY YP_002043147.1 4082618 R 423368 CDS YP_002043148.1 194446674 4083669..4085144 1 NC_011080.1 'catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis'; ketol-acid reductoisomerase 4085144 423368004279 SNSL254_A4191 Salmonella enterica subsp. enterica serovar Newport str. SL254 ketol-acid reductoisomerase YP_002043148.1 4083669 D 423368 CDS YP_002043149.1 194446230 complement(4085236..4085517) 1 NC_011080.1 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase C 4085517 423368004280 SNSL254_A4192 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidyl-prolyl cis-trans isomerase C YP_002043149.1 4085236 R 423368 CDS YP_002043150.1 194443787 4086055..4088079 1 NC_011080.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4088079 rep 423368004281 rep Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent DNA helicase Rep YP_002043150.1 4086055 D 423368 CDS YP_002043151.1 194444292 complement(4088119..4089600) 1 NC_011080.1 'catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation'; guanosine pentaphosphate phosphohydrolase 4089600 gppA 423368004282 gppA Salmonella enterica subsp. enterica serovar Newport str. SL254 guanosine pentaphosphate phosphohydrolase YP_002043151.1 4088119 R 423368 CDS YP_002043152.1 194445390 complement(4089737..4091002) 1 NC_011080.1 'enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation'; ATP-dependent RNA helicase RhlB 4091002 rhlB 423368004283 rhlB Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent RNA helicase RhlB YP_002043152.1 4089737 R 423368 CDS YP_002043153.1 194444873 4091146..4091475 1 NC_011080.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 4091475 trxA 423368004284 trxA Salmonella enterica subsp. enterica serovar Newport str. SL254 thioredoxin YP_002043153.1 4091146 D 423368 CDS YP_002043154.1 194444899 4091894..4093153 1 NC_011080.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4093153 rho 423368004285 rho Salmonella enterica subsp. enterica serovar Newport str. SL254 transcription termination factor Rho YP_002043154.1 4091894 D 423368 CDS YP_002043155.1 194446716 4093383..4094486 1 NC_011080.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR02380; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4094486 wecA 423368004286 wecA Salmonella enterica subsp. enterica serovar Newport str. SL254 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_002043155.1 4093383 D 423368 CDS YP_002043156.1 194442780 4094498..4095544 1 NC_011080.1 Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4095544 423368004287 SNSL254_A4199 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipopolysaccharide biosynthesis protein WzzE YP_002043156.1 4094498 D 423368 CDS YP_002043157.1 194443100 4095600..4096730 1 NC_011080.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 4096730 423368004288 SNSL254_A4200 Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetylglucosamine 2-epimerase YP_002043157.1 4095600 D 423368 CDS YP_002043158.1 194443033 4096727..4097989 1 NC_011080.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4097989 wecC 423368004289 wecC Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetyl-D-mannosamine dehydrogenase YP_002043158.1 4096727 D 423368 CDS YP_002043159.1 194442418 4097989..4099056 1 NC_011080.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 4099056 rfbB2 423368004290 rfbB2 Salmonella enterica subsp. enterica serovar Newport str. SL254 dTDP-glucose 4,6-dehydratase YP_002043159.1 4097989 D 423368 CDS YP_002043160.1 194443728 4099089..4099313 1 NC_011080.1 glucose-1-phosphate thymidylyltransferase 4099313 423368004291 SNSL254_A4203 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucose-1-phosphate thymidylyltransferase YP_002043160.1 4099089 D 423368 CDS YP_002043161.1 194445554 4099291..4099968 1 NC_011080.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR02382; TDP-fucosamine acetyltransferase 4099968 wecD 423368004292 wecD Salmonella enterica subsp. enterica serovar Newport str. SL254 TDP-fucosamine acetyltransferase YP_002043161.1 4099291 D 423368 CDS YP_002043162.1 194444532 4099973..4101103 1 NC_011080.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4101103 wecE 423368004293 wecE Salmonella enterica subsp. enterica serovar Newport str. SL254 TDP-4-oxo-6-deoxy-D-glucose transaminase YP_002043162.1 4099973 D 423368 CDS YP_002043163.1 194446777 4101105..4102355 1 NC_011080.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 4102355 423368004294 SNSL254_A4206 Salmonella enterica subsp. enterica serovar Newport str. SL254 polysaccharide biosynthesis protein YP_002043163.1 4101105 D 423368 CDS YP_002043164.1 194443274 4102352..4103431 1 NC_011080.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4103431 wecF 423368004295 wecF Salmonella enterica subsp. enterica serovar Newport str. SL254 4-alpha-L-fucosyltransferase YP_002043164.1 4102352 D 423368 CDS YP_002043165.1 194442671 4103428..4104786 1 NC_011080.1 enterobacterial common antigen polymerase; common antigen polymerase 4104786 wzyE 423368004296 wzyE Salmonella enterica subsp. enterica serovar Newport str. SL254 common antigen polymerase YP_002043165.1 4103428 D 423368 CDS YP_002043166.1 194444313 4104783..4105523 1 NC_011080.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; UDP-N-acetyl-D-mannosaminuronic acid transferase 4105523 423368004297 SNSL254_A4209 Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetyl-D-mannosaminuronic acid transferase YP_002043166.1 4104783 D 423368 CDS YP_002043167.1 194442292 4105730..4107115 1 NC_011080.1 uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transporter 4107115 423368004298 SNSL254_A4210 Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_002043167.1 4105730 D 423368 CDS YP_002043168.1 194445399 4107715..4107843 1 NC_011080.1 identified by glimmer; hypothetical protein 4107843 423368004303 SNSL254_A4215 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043168.1 4107715 D 423368 CDS YP_002043169.1 194443869 complement(4108232..4109431) 1 NC_011080.1 identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM TIGR00540; protoheme IX biogenesis protein 4109431 hemY 423368004305 hemY Salmonella enterica subsp. enterica serovar Newport str. SL254 protoheme IX biogenesis protein YP_002043169.1 4108232 R 423368 CDS YP_002043170.1 194443118 complement(4109431..4110600) 1 NC_011080.1 identified by match to protein family HMM PF04375; uroporphyrinogen III C-methyltransferase 4110600 423368004306 SNSL254_A4218 Salmonella enterica subsp. enterica serovar Newport str. SL254 uroporphyrinogen III C-methyltransferase YP_002043170.1 4109431 R 423368 CDS YP_002043171.1 194446231 complement(4110622..4111362) 1 NC_011080.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4111362 hemD 423368004307 hemD Salmonella enterica subsp. enterica serovar Newport str. SL254 uroporphyrinogen-III synthase YP_002043171.1 4110622 R 423368 CDS YP_002043172.1 194442426 complement(4111359..4112321) 1 NC_011080.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4112321 hemC 423368004308 hemC Salmonella enterica subsp. enterica serovar Newport str. SL254 porphobilinogen deaminase YP_002043172.1 4111359 R 423368 CDS YP_002043173.1 194442576 4112677..4115223 1 NC_011080.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4115223 cyaA 423368004309 cyaA Salmonella enterica subsp. enterica serovar Newport str. SL254 adenylate cyclase YP_002043173.1 4112677 D 423368 CDS YP_002043174.1 194443389 complement(4115301..4115621) 1 NC_011080.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4115621 cyaY 423368004310 cyaY Salmonella enterica subsp. enterica serovar Newport str. SL254 frataxin-like protein YP_002043174.1 4115301 R 423368 CDS YP_002043175.1 194444198 complement(4115691..4116071) 1 NC_011080.1 hypothetical protein 4116071 423368004311 SNSL254_A4223 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043175.1 4115691 R 423368 CDS YP_002043176.1 194442540 4116777..4116980 1 NC_011080.1 lipoprotein 4116980 423368004313 SNSL254_A4226 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002043176.1 4116777 D 423368 CDS YP_002043177.1 194443293 4117017..4117841 1 NC_011080.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4117841 dapF 423368004314 dapF Salmonella enterica subsp. enterica serovar Newport str. SL254 diaminopimelate epimerase YP_002043177.1 4117017 D 423368 CDS YP_002043178.1 194446314 4117838..4118545 1 NC_011080.1 identified by match to protein family HMM PF04340; hypothetical protein 4118545 423368004315 SNSL254_A4228 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043178.1 4117838 D 423368 CDS YP_002043179.1 194445824 4118542..4119444 1 NC_011080.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4119444 xerC 423368004316 xerC Salmonella enterica subsp. enterica serovar Newport str. SL254 site-specific tyrosine recombinase XerC YP_002043179.1 4118542 D 423368 CDS YP_002043180.1 194443889 4119444..4120160 1 NC_011080.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4120160 423368004317 SNSL254_A4230 Salmonella enterica subsp. enterica serovar Newport str. SL254 flavin mononucleotide phosphatase YP_002043180.1 4119444 D 423368 CDS YP_002043181.1 194444550 4120296..4122458 1 NC_011080.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4122458 uvrD 423368004318 uvrD Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-dependent helicase II YP_002043181.1 4120296 D 423368 CDS YP_002043182.1 194444414 4122930..4123880 1 NC_011080.1 responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4123880 corA 423368004319 corA Salmonella enterica subsp. enterica serovar Newport str. SL254 magnesium/nickel/cobalt transporter CorA YP_002043182.1 4122930 D 423368 CDS YP_002043183.1 194443783 complement(4123928..4124308) 1 NC_011080.1 hypothetical protein 4124308 423368004320 SNSL254_A4233 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043183.1 4123928 R 423368 CDS YP_002043184.1 194442993 4124483..4124779 1 NC_011080.1 hypothetical protein 4124779 423368004321 SNSL254_A4234 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043184.1 4124483 D 423368 CDS YP_002043185.1 194445006 complement(4124819..4125706) 1 NC_011080.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 4125706 rarD 423368004322 rarD Salmonella enterica subsp. enterica serovar Newport str. SL254 RarD protein YP_002043185.1 4124819 R 423368 CDS YP_002043186.1 194446657 complement(4125750..4126217) 1 NC_011080.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 4126217 423368004323 SNSL254_A4236 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043186.1 4125750 R 423368 CDS YP_002043187.1 194445993 4126382..4127251 1 NC_011080.1 catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4127251 423368004324 SNSL254_A4237 Salmonella enterica subsp. enterica serovar Newport str. SL254 phospholipase A YP_002043187.1 4126382 D 423368 CDS YP_002043188.1 194446579 4127317..4129164 1 NC_011080.1 'functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway'; ATP-dependent DNA helicase RecQ 4129164 recQ 423368004325 recQ Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent DNA helicase RecQ YP_002043188.1 4127317 D 423368 CDS YP_002043189.1 194446070 4129228..4129848 1 NC_011080.1 identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; threonine efflux system 4129848 rhtC 423368004326 rhtC Salmonella enterica subsp. enterica serovar Newport str. SL254 threonine efflux system YP_002043189.1 4129228 D 423368 CDS YP_002043190.1 194445576 complement(4129888..4130508) 1 NC_011080.1 identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; homoserine/homoserine lactone efflux protein 4130508 rhtB 423368004327 rhtB Salmonella enterica subsp. enterica serovar Newport str. SL254 homoserine/homoserine lactone efflux protein YP_002043190.1 4129888 R 423368 CDS YP_002043191.1 194445018 4130619..4131635 1 NC_011080.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4131635 pldB 423368004328 pldB Salmonella enterica subsp. enterica serovar Newport str. SL254 lysophospholipase L2 YP_002043191.1 4130619 D 423368 CDS YP_008083658.1 513538139 4131651..4132451 1 NC_011080.1 hydrolase 4132451 423368004329 SNSL254_A4242 Salmonella enterica subsp. enterica serovar Newport str. SL254 hydrolase YP_008083658.1 4131651 D 423368 CDS YP_002043192.1 194442860 complement(4133319..4134272) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator MetR 4134272 metR 423368004330 metR Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator MetR YP_002043192.1 4133319 R 423368 CDS YP_002043193.1 194442491 4134521..4136785 1 NC_011080.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4136785 metE 423368004331 metE Salmonella enterica subsp. enterica serovar Newport str. SL254 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_002043193.1 4134521 D 423368 CDS YP_002043194.1 194443918 4136849..4136968 1 NC_011080.1 identified by glimmer; hypothetical protein 4136968 423368004332 SNSL254_A4245 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043194.1 4136849 D 423368 CDS YP_002043195.1 194443254 4137157..4138452 1 NC_011080.1 identified by match to protein family HMM PF02810; match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 4138452 423368004333 SNSL254_A4246 Salmonella enterica subsp. enterica serovar Newport str. SL254 chondroitin sulfate/heparin utilization regulation protein YP_002043195.1 4137157 D 423368 CDS YP_002043196.2 448967559 complement(4138532..4139344) 1 NC_011080.1 identified by match to protein family HMM PF01738; dienelactone hydrolase 4139344 423368004334 SNSL254_A4247 Salmonella enterica subsp. enterica serovar Newport str. SL254 dienelactone hydrolase YP_002043196.2 4138532 R 423368 CDS YP_002043197.1 194442435 4139603..4140364 1 NC_011080.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4140364 udp 423368004335 udp Salmonella enterica subsp. enterica serovar Newport str. SL254 uridine phosphorylase YP_002043197.1 4139603 D 423368 CDS YP_002043198.1 194444604 4140504..4141934 1 NC_011080.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4141934 423368004336 SNSL254_A4249 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA recombination protein RmuC YP_002043198.1 4140504 D 423368 CDS YP_002043199.1 194445155 4142030..4142785 1 NC_011080.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4142785 ubiE 423368004337 ubiE Salmonella enterica subsp. enterica serovar Newport str. SL254 ubiquinone/menaquinone biosynthesis methyltransferase YP_002043199.1 4142030 D 423368 CDS YP_002043200.1 194445915 4142795..4143400 1 NC_011080.1 identified by match to protein family HMM PF02036; hypothetical protein 4143400 423368004338 SNSL254_A4251 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043200.1 4142795 D 423368 CDS YP_002043201.1 194446439 4143397..4145037 1 NC_011080.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 4145037 ubiB 423368004339 ubiB Salmonella enterica subsp. enterica serovar Newport str. SL254 ubiquinone biosynthesis protein UbiB YP_002043201.1 4143397 D 423368 CDS YP_002043202.1 194442526 4145243..4145497 1 NC_011080.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 4145497 tatA 423368004340 tatA Salmonella enterica subsp. enterica serovar Newport str. SL254 twin arginine translocase protein A YP_002043202.1 4145243 D 423368 CDS YP_002043203.1 194442473 4145501..4146049 1 NC_011080.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4146049 423368004341 SNSL254_A4254 Salmonella enterica subsp. enterica serovar Newport str. SL254 sec-independent translocase YP_002043203.1 4145501 D 423368 CDS YP_002043204.1 194446122 4146052..4146831 1 NC_011080.1 with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4146831 tatC 423368004342 tatC Salmonella enterica subsp. enterica serovar Newport str. SL254 twin-arginine protein translocation system subunit TatC YP_002043204.1 4146052 D 423368 CDS YP_002043205.1 194446802 4146873..4147655 1 NC_011080.1 magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4147655 423368004343 SNSL254_A4256 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNase TatD YP_002043205.1 4146873 D 423368 CDS YP_002043206.1 194442676 complement(4147663..4148151) 1 NC_011080.1 identified by match to protein family HMM PF02357; match to protein family HMM TIGR01955; transcriptional activator RfaH 4148151 rfaH 423368004344 rfaH Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional activator RfaH YP_002043206.1 4147663 R 423368 CDS YP_002043207.1 194445783 4148337..4149815 1 NC_011080.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4149815 ubiD 423368004345 ubiD Salmonella enterica subsp. enterica serovar Newport str. SL254 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002043207.1 4148337 D 423368 CDS YP_002043208.1 194443643 4149901..4150602 1 NC_011080.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4150602 fre 423368004346 fre Salmonella enterica subsp. enterica serovar Newport str. SL254 FMN reductase YP_002043208.1 4149901 D 423368 CDS YP_002043209.1 194444263 4150856..4152679 1 NC_011080.1 identified by match to protein family HMM PF05935; arylsulfotransferase 4152679 423368004347 SNSL254_A4260 Salmonella enterica subsp. enterica serovar Newport str. SL254 arylsulfotransferase YP_002043209.1 4150856 D 423368 CDS YP_002043210.1 194444681 complement(4152876..4154039) 1 NC_011080.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4154039 fadA 423368004348 fadA Salmonella enterica subsp. enterica serovar Newport str. SL254 3-ketoacyl-CoA thiolase YP_002043210.1 4152876 R 423368 CDS YP_002043211.1 194445345 complement(4154049..4156238) 1 NC_011080.1 'includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids'; multifunctional fatty acid oxidation complex subunit alpha 4156238 fadB 423368004349 fadB Salmonella enterica subsp. enterica serovar Newport str. SL254 multifunctional fatty acid oxidation complex subunit alpha YP_002043211.1 4154049 R 423368 CDS YP_002043212.1 194443268 4156427..4157758 1 NC_011080.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4157758 pepQ 423368004350 pepQ Salmonella enterica subsp. enterica serovar Newport str. SL254 proline dipeptidase YP_002043212.1 4156427 D 423368 CDS YP_002043213.1 194446238 4157758..4158372 1 NC_011080.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257; hypothetical protein 4158372 423368004351 SNSL254_A4264 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043213.1 4157758 D 423368 CDS YP_002043214.1 194446278 4158411..4159862 1 NC_011080.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; potassium transporter 4159862 trkH 423368004352 trkH Salmonella enterica subsp. enterica serovar Newport str. SL254 potassium transporter YP_002043214.1 4158411 D 423368 CDS YP_002043215.1 194445777 4159874..4160419 1 NC_011080.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4160419 hemG 423368004353 hemG Salmonella enterica subsp. enterica serovar Newport str. SL254 protoporphyrinogen oxidase YP_002043215.1 4159874 D 423368 CDS YP_002043216.1 194444438 complement(4166270..4166800) 1 NC_011080.1 in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein MobB 4166800 mobB 423368004359 mobB Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_002043216.1 4166270 R 423368 CDS YP_002043217.1 194443884 complement(4166782..4167366) 1 NC_011080.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4167366 mobA 423368004360 mobA Salmonella enterica subsp. enterica serovar Newport str. SL254 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_002043217.1 4166782 R 423368 CDS YP_002043218.1 194443159 4167436..4167705 1 NC_011080.1 identified by match to protein family HMM PF06288; hypothetical protein 4167705 423368004361 SNSL254_A4276 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043218.1 4167436 D 423368 CDS YP_002043219.1 194442549 4167782..4168768 1 NC_011080.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4168768 423368004362 SNSL254_A4277 Salmonella enterica subsp. enterica serovar Newport str. SL254 serine/threonine protein kinase YP_002043219.1 4167782 D 423368 CDS YP_002043220.1 194444754 4168785..4169408 1 NC_011080.1 identified by match to protein family HMM PF01323; protein disulfide isomerase I 4169408 423368004363 SNSL254_A4278 Salmonella enterica subsp. enterica serovar Newport str. SL254 protein disulfide isomerase I YP_002043220.1 4168785 D 423368 CDS YP_002043221.1 194446325 complement(4169421..4170329) 1 NC_011080.1 identified by match to protein family HMM PF01553; acyltransferase 4170329 423368004364 SNSL254_A4279 Salmonella enterica subsp. enterica serovar Newport str. SL254 acyltransferase YP_002043221.1 4169421 R 423368 CDS YP_002043222.1 194444416 complement(4170527..4170658) 1 NC_011080.1 identified by glimmer; hypothetical protein 4170658 423368004365 SNSL254_A4280 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043222.1 4170527 R 423368 CDS YP_002043223.1 194444061 4170717..4173503 1 NC_011080.1 'has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair'; DNA polymerase I 4173503 423368004366 SNSL254_A4281 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase I YP_002043223.1 4170717 D 423368 CDS YP_002043224.1 194443397 complement(4173838..4174470) 1 NC_011080.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4174470 engB 423368004368 engB Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosome biogenesis GTP-binding protein YsxC YP_002043224.1 4173838 R 423368 CDS YP_002043225.1 194445363 4175053..4175568 1 NC_011080.1 identified by match to protein family HMM PF04220; hypothetical protein 4175568 423368004370 SNSL254_A4285 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043225.1 4175053 D 423368 CDS YP_002043226.1 194443776 4175757..4177130 1 NC_011080.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4177130 hemN 423368004371 hemN Salmonella enterica subsp. enterica serovar Newport str. SL254 coproporphyrinogen III oxidase YP_002043226.1 4175757 D 423368 CDS YP_002043227.1 194445307 complement(4177443..4178852) 1 NC_011080.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) 4178852 glnG 423368004372 glnG Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrogen regulation protein NR(I) YP_002043227.1 4177443 R 423368 CDS YP_002043228.1 194444506 complement(4178861..4179910) 1 NC_011080.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 4179910 glnL 423368004373 glnL Salmonella enterica subsp. enterica serovar Newport str. SL254 nitrogen regulation protein NR(II) YP_002043228.1 4178861 R 423368 CDS YP_002043229.1 194446331 complement(4180185..4181594) 1 NC_011080.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4181594 glnA 423368004374 glnA Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamine synthetase YP_002043229.1 4180185 R 423368 CDS YP_002043230.1 194443181 4181970..4183793 1 NC_011080.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein 4183793 typA 423368004375 typA Salmonella enterica subsp. enterica serovar Newport str. SL254 GTP-binding protein YP_002043230.1 4181970 D 423368 CDS YP_002043231.1 194442550 complement(4183848..4184027) 1 NC_011080.1 hypothetical protein 4184027 423368004376 SNSL254_A4291 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043231.1 4183848 R 423368 CDS YP_002043232.1 194443106 complement(4184184..4184876) 1 NC_011080.1 porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L 4184876 ompL 423368004377 ompL Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane porin L YP_002043232.1 4184184 R 423368 CDS YP_002043233.1 194442641 complement(4184944..4186362) 1 NC_011080.1 identified by match to protein family HMM TIGR00792; sugar (Glycoside-Pentoside-Hexuronide) transporter 4186362 423368004378 SNSL254_A4293 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar (Glycoside-Pentoside-Hexuronide) transporter YP_002043233.1 4184944 R 423368 CDS YP_002043234.1 194444366 complement(4186408..4187790) 1 NC_011080.1 identified by match to protein family HMM TIGR00792; inner membrane symporter YihP 4187790 423368004379 SNSL254_A4294 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane symporter YihP YP_002043234.1 4186408 R 423368 CDS YP_002043235.1 194443906 complement(4187836..4189872) 1 NC_011080.1 identified by match to protein family HMM PF01055; alpha-glucosidase 4189872 423368004380 SNSL254_A4295 Salmonella enterica subsp. enterica serovar Newport str. SL254 alpha-glucosidase YP_002043235.1 4187836 R 423368 CDS YP_002043236.1 194444475 complement(4189996..4190871) 1 NC_011080.1 identified by match to protein family HMM PF01925; hypothetical protein 4190871 423368004381 SNSL254_A4296 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043236.1 4189996 R 423368 CDS YP_002043237.1 194443825 complement(4190960..4191847) 1 NC_011080.1 identified by match to protein family HMM PF01263; aldose-1-epimerase 4191847 423368004382 SNSL254_A4297 Salmonella enterica subsp. enterica serovar Newport str. SL254 aldose-1-epimerase YP_002043237.1 4190960 R 423368 CDS YP_002043238.1 194445186 complement(4191934..4193175) 1 NC_011080.1 identified by match to protein family HMM PF07221; N-acylglucosamine 2-epimerase 4193175 423368004383 SNSL254_A4298 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acylglucosamine 2-epimerase YP_002043238.1 4191934 R 423368 CDS YP_002043239.1 194444533 complement(4193191..4194069) 1 NC_011080.1 identified by match to protein family HMM PF01791; deoxyribose-phosphate aldolase 4194069 423368004384 SNSL254_A4299 Salmonella enterica subsp. enterica serovar Newport str. SL254 deoxyribose-phosphate aldolase YP_002043239.1 4193191 R 423368 CDS YP_002043240.1 194446407 complement(4194092..4194988) 1 NC_011080.1 identified by match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase 4194988 423368004385 SNSL254_A4300 Salmonella enterica subsp. enterica serovar Newport str. SL254 3-hydroxyisobutyrate dehydrogenase YP_002043240.1 4194092 R 423368 CDS YP_002043241.1 194445898 complement(4194976..4195095) 1 NC_011080.1 identified by glimmer; hypothetical protein 4195095 423368004386 SNSL254_A4301 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043241.1 4194976 R 423368 CDS YP_002043242.1 194442754 4195153..4196049 1 NC_011080.1 identified by match to protein family HMM PF00294; kinase PfkB family 4196049 423368004387 SNSL254_A4302 Salmonella enterica subsp. enterica serovar Newport str. SL254 kinase PfkB family YP_002043242.1 4195153 D 423368 CDS YP_002043243.1 194444406 4196083..4196886 1 NC_011080.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; glycerol-3-phosphate regulon repressor 4196886 423368004388 SNSL254_A4303 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol-3-phosphate regulon repressor YP_002043243.1 4196083 D 423368 CDS YP_002043244.1 194445145 4197077..4197676 1 NC_011080.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; phosphatase 4197676 yihX 423368004389 yihX Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphatase YP_002043244.1 4197077 D 423368 CDS YP_002043245.1 194444515 4197670..4198542 1 NC_011080.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4198542 rbn 423368004390 rbn Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease BN YP_002043245.1 4197670 D 423368 CDS YP_002043246.1 194445127 4198539..4198976 1 NC_011080.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4198976 dtd 423368004391 dtd Salmonella enterica subsp. enterica serovar Newport str. SL254 D-tyrosyl-tRNA(Tyr) deacylase YP_002043246.1 4198539 D 423368 CDS YP_002043247.1 194444618 4198973..4199962 1 NC_011080.1 identified by match to protein family HMM PF00583; match to protein family HMM PF09500; match to protein family HMM TIGR02447; GNAT family acetyltransferase 4199962 423368004392 SNSL254_A4307 Salmonella enterica subsp. enterica serovar Newport str. SL254 GNAT family acetyltransferase YP_002043247.1 4198973 D 423368 CDS YP_002043248.1 194446448 complement(4199977..4200405) 1 NC_011080.1 identified by match to protein family HMM PF01381; hypothetical protein 4200405 423368004393 SNSL254_A4308 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043248.1 4199977 R 423368 CDS YP_002043249.1 194445929 complement(4200420..4200731) 1 NC_011080.1 hypothetical protein 4200731 423368004394 SNSL254_A4309 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043249.1 4200420 R 423368 CDS YP_002043250.1 194443122 complement(4200817..4201746) 1 NC_011080.1 identified by match to protein family HMM PF07859; acetyl esterase 4201746 423368004395 SNSL254_A4310 Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyl esterase YP_002043250.1 4200817 R 423368 CDS YP_002043252.2 448967560 4201964..4202275 1 NC_011080.1 hypothetical protein 4202275 423368004396 SNSL254_A4311 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043252.2 4201964 D 423368 CDS YP_002043253.1 194444589 4202276..4202566 1 NC_011080.1 identified by match to protein family HMM PF01381; XRE family transcriptional regulator 4202566 423368004397 SNSL254_A4313 Salmonella enterica subsp. enterica serovar Newport str. SL254 XRE family transcriptional regulator YP_002043253.1 4202276 D 423368 CDS YP_002043254.1 194446488 complement(4202613..4203542) 1 NC_011080.1 required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE 4203542 fdhE 423368004398 fdhE Salmonella enterica subsp. enterica serovar Newport str. SL254 formate dehydrogenase accessory protein FdhE YP_002043254.1 4202613 R 423368 CDS YP_002043255.1 194445936 complement(4203539..4204174) 1 NC_011080.1 cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma 4204174 fdoI 423368004399 fdoI Salmonella enterica subsp. enterica serovar Newport str. SL254 formate dehydrogenase-O subunit gamma YP_002043255.1 4203539 R 423368 CDS YP_002043256.1 194442665 complement(4204171..4205073) 1 NC_011080.1 identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase-O, iron-sulfur subunit 4205073 fdoH 423368004400 fdoH Salmonella enterica subsp. enterica serovar Newport str. SL254 formate dehydrogenase-O, iron-sulfur subunit YP_002043256.1 4204171 R 423368 CDS YP_002043257.1 194442281 4208331..4209167 1 NC_011080.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4209167 fdhD 423368004402 fdhD Salmonella enterica subsp. enterica serovar Newport str. SL254 formate dehydrogenase accessory protein YP_002043257.1 4208331 D 423368 CDS YP_002043258.1 194444638 complement(4209435..4210466) 1 NC_011080.1 hypothetical protein 4210466 423368004403 SNSL254_A4320 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043258.1 4209435 R 423368 CDS YP_002043259.1 194443990 4210649..4211749 1 NC_011080.1 hypothetical protein 4211749 423368004404 SNSL254_A4321 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043259.1 4210649 D 423368 CDS YP_002043260.1 194443416 4211746..4211877 1 NC_011080.1 identified by glimmer; hypothetical protein 4211877 423368004405 SNSL254_A4322 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043260.1 4211746 D 423368 CDS YP_002043261.1 194445531 complement(4212092..4212415) 1 NC_011080.1 identified by match to protein family HMM PF05437; branched-chain amino acid transporter 4212415 423368004406 SNSL254_A4323 Salmonella enterica subsp. enterica serovar Newport str. SL254 branched-chain amino acid transporter YP_002043261.1 4212092 R 423368 CDS YP_002043262.1 194445014 complement(4212415..4213074) 1 NC_011080.1 identified by match to protein family HMM PF03591; AzlC family protein 4213074 423368004407 SNSL254_A4324 Salmonella enterica subsp. enterica serovar Newport str. SL254 AzlC family protein YP_002043262.1 4212415 R 423368 CDS YP_002043263.1 194446538 4213175..4213723 1 NC_011080.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; XRE family transcriptional regulator 4213723 423368004408 SNSL254_A4325 Salmonella enterica subsp. enterica serovar Newport str. SL254 XRE family transcriptional regulator YP_002043263.1 4213175 D 423368 CDS YP_002043264.1 194446616 complement(4213812..4214126) 1 NC_011080.1 identified by match to protein family HMM PF05336; match to protein family HMM TIGR02625; L-rhamnose 1-epimerase 4214126 rhaU 423368004409 rhaU Salmonella enterica subsp. enterica serovar Newport str. SL254 L-rhamnose 1-epimerase YP_002043264.1 4213812 R 423368 CDS YP_002043265.1 194442943 complement(4214123..4215271) 1 NC_011080.1 identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; lactaldehyde reductase 4215271 fucO 423368004410 fucO Salmonella enterica subsp. enterica serovar Newport str. SL254 lactaldehyde reductase YP_002043265.1 4214123 R 423368 CDS YP_002043266.1 194442457 complement(4215398..4216225) 1 NC_011080.1 identified by match to protein family HMM PF00596; match to protein family HMM TIGR02624; rhamnulose-1-phosphate aldolase 4216225 rhaD 423368004411 rhaD Salmonella enterica subsp. enterica serovar Newport str. SL254 rhamnulose-1-phosphate aldolase YP_002043266.1 4215398 R 423368 CDS YP_002043267.1 194443942 complement(4216368..4217627) 1 NC_011080.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 4217627 rhaA 423368004412 rhaA Salmonella enterica subsp. enterica serovar Newport str. SL254 L-rhamnose isomerase YP_002043267.1 4216368 R 423368 CDS YP_002043268.1 194443972 complement(4217624..4219093) 1 NC_011080.1 catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase 4219093 rhaB 423368004413 rhaB Salmonella enterica subsp. enterica serovar Newport str. SL254 rhamnulokinase YP_002043268.1 4217624 R 423368 CDS YP_002043269.1 194443483 4219381..4220217 1 NC_011080.1 activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4220217 423368004414 SNSL254_A4331 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional activator RhaS YP_002043269.1 4219381 D 423368 CDS YP_002043270.1 194444761 4220370..4221218 1 NC_011080.1 activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4221218 423368004415 SNSL254_A4332 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional activator RhaR YP_002043270.1 4220370 D 423368 CDS YP_002043271.1 194446545 complement(4221215..4222249) 1 NC_011080.1 transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter 4222249 423368004416 SNSL254_A4333 Salmonella enterica subsp. enterica serovar Newport str. SL254 rhamnose-proton symporter YP_002043271.1 4221215 R 423368 CDS YP_002043272.1 194445220 4222253..4222384 1 NC_011080.1 hypothetical protein 4222384 423368004417 SNSL254_A4334 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043272.1 4222253 D 423368 CDS YP_002043274.1 194445896 4222718..4222843 1 NC_011080.1 identified by glimmer; hypothetical protein 4222843 423368004418 SNSL254_A4336 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043274.1 4222718 D 423368 CDS YP_002043275.1 194446425 4222880..4223551 1 NC_011080.1 identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 4223551 423368004419 SNSL254_A4337 Salmonella enterica subsp. enterica serovar Newport str. SL254 oligogalacturonate-specific porin YP_002043275.1 4222880 D 423368 CDS YP_002043276.1 194444602 complement(4223710..4225017) 1 NC_011080.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; trap dicarboxylate transporter subunit DctM 4225017 423368004420 SNSL254_A4338 Salmonella enterica subsp. enterica serovar Newport str. SL254 trap dicarboxylate transporter subunit DctM YP_002043276.1 4223710 R 423368 CDS YP_002043277.1 194445049 complement(4225010..4225525) 1 NC_011080.1 identified by match to protein family HMM PF04290; trap dicarboxylate transporter subunit DctQ 4225525 423368004421 SNSL254_A4339 Salmonella enterica subsp. enterica serovar Newport str. SL254 trap dicarboxylate transporter subunit DctQ YP_002043277.1 4225010 R 423368 CDS YP_002043278.1 194443902 complement(4225544..4226527) 1 NC_011080.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter subunit DctP 4226527 423368004422 SNSL254_A4340 Salmonella enterica subsp. enterica serovar Newport str. SL254 trap dicarboxylate transporter subunit DctP YP_002043278.1 4225544 R 423368 CDS YP_002043279.1 194444427 4226856..4227476 1 NC_011080.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4227476 sodA 423368004423 sodA Salmonella enterica subsp. enterica serovar Newport str. SL254 superoxide dismutase YP_002043279.1 4226856 D 423368 CDS YP_002043280.1 194442873 4227546..4228235 1 NC_011080.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 4228235 423368004424 SNSL254_A4342 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043280.1 4227546 D 423368 CDS YP_002043281.1 194445810 4228247..4228642 1 NC_011080.1 hypothetical protein 4228642 423368004425 SNSL254_A4343 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043281.1 4228247 D 423368 CDS YP_002043282.1 194446765 4228763..4228966 1 NC_011080.1 identified by glimmer; hypothetical protein 4228966 423368004426 SNSL254_A4344 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043282.1 4228763 D 423368 CDS YP_002043283.1 194444500 complement(4229014..4230387) 1 NC_011080.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4230387 cpxA 423368004427 cpxA Salmonella enterica subsp. enterica serovar Newport str. SL254 two-component sensor protein YP_002043283.1 4229014 R 423368 CDS YP_002043284.1 194442670 complement(4230384..4231082) 1 NC_011080.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4231082 cpxR 423368004428 cpxR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator CpxR YP_002043284.1 4230384 R 423368 CDS YP_002043285.1 194446258 4231233..4231733 1 NC_011080.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4231733 cpxP 423368004429 cpxP Salmonella enterica subsp. enterica serovar Newport str. SL254 repressor CpxP YP_002043285.1 4231233 D 423368 CDS YP_002043286.1 194446198 complement(4231918..4232898) 1 NC_011080.1 identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family 4232898 423368004430 SNSL254_A4348 Salmonella enterica subsp. enterica serovar Newport str. SL254 site-specific recombinase, phage integrase family YP_002043286.1 4231918 R 423368 CDS YP_002043287.1 194445545 4233398..4233670 1 NC_011080.1 Cox protein 4233670 423368004431 SNSL254_A4349 Salmonella enterica subsp. enterica serovar Newport str. SL254 Cox protein YP_002043287.1 4233398 D 423368 CDS YP_002043288.1 194445450 4233727..4233849 1 NC_011080.1 hypothetical protein 4233849 423368004432 SNSL254_A4350 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043288.1 4233727 D 423368 CDS YP_002043289.1 194444812 4233849..4234340 1 NC_011080.1 replication gene B protein 4234340 423368004433 SNSL254_A4351 Salmonella enterica subsp. enterica serovar Newport str. SL254 replication gene B protein YP_002043289.1 4233849 D 423368 CDS YP_002043290.1 194442289 4234404..4234628 1 NC_011080.1 hypothetical protein 4234628 423368004434 SNSL254_A4352 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043290.1 4234404 D 423368 CDS YP_002043291.1 194446339 complement(4234988..4235125) 1 NC_011080.1 identified by glimmer; hypothetical protein 4235125 423368004436 SNSL254_A4355 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043291.1 4234988 R 423368 CDS YP_002043292.1 194444584 4235151..4235426 1 NC_011080.1 gp83 4235426 423368004437 SNSL254_A4356 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp83 YP_002043292.1 4235151 D 423368 CDS YP_002043293.1 194445350 4235569..4237692 1 NC_011080.1 identified by match to protein family HMM PF05840; replication gene A protein 4237692 423368004438 SNSL254_A4357 Salmonella enterica subsp. enterica serovar Newport str. SL254 replication gene A protein YP_002043293.1 4235569 D 423368 CDS YP_002043294.1 194445845 complement(4238065..4239105) 1 NC_011080.1 identified by match to protein family HMM PF02661; Fic protein family 4239105 423368004439 SNSL254_A4358 Salmonella enterica subsp. enterica serovar Newport str. SL254 Fic protein family YP_002043294.1 4238065 R 423368 CDS YP_002043295.1 194446409 complement(4239239..4239670) 1 NC_011080.1 hypothetical protein 4239670 423368004440 SNSL254_A4360 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043295.1 4239239 R 423368 CDS YP_002043296.1 194442561 4239669..4239860 1 NC_011080.1 identified by glimmer; hypothetical protein 4239860 423368004441 SNSL254_A4359 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043296.1 4239669 D 423368 CDS YP_002043297.1 194443304 complement(4240024..4240161) 1 NC_011080.1 identified by glimmer; hypothetical protein 4240161 423368004442 SNSL254_A4361 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043297.1 4240024 R 423368 CDS YP_002043298.1 194444196 4240189..4240326 1 NC_011080.1 identified by glimmer; hypothetical protein 4240326 423368004443 SNSL254_A4362 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043298.1 4240189 D 423368 CDS YP_002043299.1 194444567 complement(4240381..4241418) 1 NC_011080.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540; phage portal protein pbsx family 4241418 423368004444 SNSL254_A4363 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage portal protein pbsx family YP_002043299.1 4240381 R 423368 CDS YP_002043300.1 194444881 complement(4241418..4243187) 1 NC_011080.1 identified by match to protein family HMM PF03237; match to protein family HMM PF06056; hypothetical protein 4243187 423368004445 SNSL254_A4364 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043300.1 4241418 R 423368 CDS YP_002043301.1 194445842 4243352..4244215 1 NC_011080.1 identified by match to protein family HMM PF05929; phage capsid scaffolding protein GpO 4244215 423368004446 SNSL254_A4365 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage capsid scaffolding protein GpO YP_002043301.1 4243352 D 423368 CDS YP_002043302.1 194446211 4244247..4245407 1 NC_011080.1 identified by match to protein family HMM PF05125; match to protein family HMM TIGR01551; phage major capsid protein P2 family 4245407 423368004447 SNSL254_A4366 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage major capsid protein P2 family YP_002043302.1 4244247 D 423368 CDS YP_002043303.1 194443415 4245411..4246169 1 NC_011080.1 identified by match to protein family HMM PF05944; match to protein family HMM PF07719; gpM 4246169 423368004448 SNSL254_A4367 Salmonella enterica subsp. enterica serovar Newport str. SL254 gpM YP_002043303.1 4245411 D 423368 CDS YP_002043304.1 194446592 complement(4246122..4246241) 1 NC_011080.1 identified by glimmer; hypothetical protein 4246241 423368004449 SNSL254_A4368 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043304.1 4246122 R 423368 CDS YP_002043305.1 194444368 4246267..4246767 1 NC_011080.1 identified by match to protein family HMM PF05926; phage head completion protein 4246767 423368004450 SNSL254_A4369 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage head completion protein YP_002043305.1 4246267 D 423368 CDS YP_002043306.1 194444724 4246767..4246970 1 NC_011080.1 identified by match to protein family HMM PF05489; phage Tail Protein X 4246970 423368004451 SNSL254_A4370 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage Tail Protein X YP_002043306.1 4246767 D 423368 CDS YP_002043307.1 194445097 4246973..4247182 1 NC_011080.1 prophage Hp1 family holin 4247182 423368004452 SNSL254_A4371 Salmonella enterica subsp. enterica serovar Newport str. SL254 prophage Hp1 family holin YP_002043307.1 4246973 D 423368 CDS YP_002043308.1 194445839 4247166..4247675 1 NC_011080.1 identified by match to protein family HMM PF00959; glycoside hydrolase 4247675 423368004453 SNSL254_A4372 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycoside hydrolase YP_002043308.1 4247166 D 423368 CDS YP_002043309.1 194446505 4247672..4248085 1 NC_011080.1 identified by match to protein family HMM TIGR03495; phage lysis regulatory protein 4248085 423368004454 SNSL254_A4373 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage lysis regulatory protein YP_002043309.1 4247672 D 423368 CDS YP_002043310.1 194442731 4248193..4248660 1 NC_011080.1 identified by match to protein family HMM PF06891; P2 phage tail completion protein R 4248660 423368004455 SNSL254_A4374 Salmonella enterica subsp. enterica serovar Newport str. SL254 P2 phage tail completion protein R YP_002043310.1 4248193 D 423368 CDS YP_002043311.1 194443084 4248653..4249120 1 NC_011080.1 identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635; phage virion morphogenesis protein 4249120 423368004456 SNSL254_A4375 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage virion morphogenesis protein YP_002043311.1 4248653 D 423368 CDS YP_002043312.1 194442263 4249158..4250501 1 NC_011080.1 hypothetical protein 4250501 423368004457 SNSL254_A4376 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043312.1 4249158 D 423368 CDS YP_002043313.1 194443831 4250578..4251219 1 NC_011080.1 identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644; baseplate assembly protein V 4251219 423368004458 SNSL254_A4377 Salmonella enterica subsp. enterica serovar Newport str. SL254 baseplate assembly protein V YP_002043313.1 4250578 D 423368 CDS YP_002043314.1 194443600 4251216..4251563 1 NC_011080.1 identified by match to protein family HMM PF04965; baseplate assembly protein W 4251563 423368004459 SNSL254_A4378 Salmonella enterica subsp. enterica serovar Newport str. SL254 baseplate assembly protein W YP_002043314.1 4251216 D 423368 CDS YP_002043315.1 194443982 4251570..4252478 1 NC_011080.1 identified by match to protein family HMM PF04865; baseplate assembly protein J 4252478 423368004460 SNSL254_A4379 Salmonella enterica subsp. enterica serovar Newport str. SL254 baseplate assembly protein J YP_002043315.1 4251570 D 423368 CDS YP_002043316.1 194445466 4252471..4253001 1 NC_011080.1 identified by match to protein family HMM PF09684; match to protein family HMM TIGR01634; phage tail protein I 4253001 423368004461 SNSL254_A4380 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail protein I YP_002043316.1 4252471 D 423368 CDS YP_002043317.1 194445827 4253012..4254754 1 NC_011080.1 identified by match to protein family HMM PF03406; match to protein family HMM PF07484; gp19 4254754 423368004462 SNSL254_A4381 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp19 YP_002043317.1 4253012 D 423368 CDS YP_002043318.1 194444064 4254754..4255323 1 NC_011080.1 identified by match to protein family HMM PF02413; phage tail assembly protein 4255323 423368004463 SNSL254_A4382 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail assembly protein YP_002043318.1 4254754 D 423368 CDS YP_002043319.1 194444297 4255458..4256645 1 NC_011080.1 identified by match to protein family HMM PF04984; phage tail sheath protein 4256645 423368004464 SNSL254_A4383 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail sheath protein YP_002043319.1 4255458 D 423368 CDS YP_002043320.1 194445483 4256661..4257179 1 NC_011080.1 identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611; phage major tail tube protein 4257179 423368004465 SNSL254_A4384 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage major tail tube protein YP_002043320.1 4256661 D 423368 CDS YP_008083659.1 513538140 4257242..4257577 1 NC_011080.1 phage tail protein E 4257577 423368004466 SNSL254_A4385 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail protein E YP_008083659.1 4257242 D 423368 CDS YP_002043321.1 194445727 4257722..4260163 1 NC_011080.1 identified by match to protein family HMM TIGR01760; gp24 4260163 423368004467 SNSL254_A4387 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp24 YP_002043321.1 4257722 D 423368 CDS YP_002043322.1 194445941 4260172..4260660 1 NC_011080.1 identified by match to protein family HMM PF06995; gp25 4260660 423368004468 SNSL254_A4388 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp25 YP_002043322.1 4260172 D 423368 CDS YP_002043323.1 194442964 4260657..4261826 1 NC_011080.1 identified by match to protein family HMM PF05954; late control gene D protein 4261826 423368004469 SNSL254_A4389 Salmonella enterica subsp. enterica serovar Newport str. SL254 late control gene D protein YP_002043323.1 4260657 D 423368 CDS YP_002043324.1 194442416 4262860..4263762 1 NC_011080.1 'member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers'; ferrous iron efflux protein F 4263762 fieF 423368004470 fieF Salmonella enterica subsp. enterica serovar Newport str. SL254 ferrous iron efflux protein F YP_002043324.1 4262860 D 423368 CDS YP_002043325.1 194442637 4263947..4264909 1 NC_011080.1 'catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis'; 6-phosphofructokinase 4264909 pfkA 423368004471 pfkA Salmonella enterica subsp. enterica serovar Newport str. SL254 6-phosphofructokinase YP_002043325.1 4263947 D 423368 CDS YP_002043326.1 194442753 4265113..4266102 1 NC_011080.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; sulfate transporter subunit 4266102 423368004472 SNSL254_A4392 Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfate transporter subunit YP_002043326.1 4265113 D 423368 CDS YP_008083660.1 513538141 4266203..4266958 1 NC_011080.1 CDP-diacylglycerol pyrophosphatase 4266958 cdh 423368004473 cdh Salmonella enterica subsp. enterica serovar Newport str. SL254 CDP-diacylglycerol pyrophosphatase YP_008083660.1 4266203 D 423368 CDS YP_002043327.1 194443712 4267221..4268555 1 NC_011080.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sugar (Glycoside-Pentoside-Hexuronide) transporter 4268555 423368004474 SNSL254_A4394 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar (Glycoside-Pentoside-Hexuronide) transporter YP_002043327.1 4267221 D 423368 CDS YP_002043328.1 194445245 4268566..4269525 1 NC_011080.1 phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4269525 423368004475 SNSL254_A4395 Salmonella enterica subsp. enterica serovar Newport str. SL254 aminoimidazole riboside kinase YP_002043328.1 4268566 D 423368 CDS YP_002043329.1 194445254 4269535..4270575 1 NC_011080.1 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase superfamily 4270575 423368004476 SNSL254_A4396 Salmonella enterica subsp. enterica serovar Newport str. SL254 ADP-ribosylglycohydrolase superfamily YP_002043329.1 4269535 D 423368 CDS YP_002043330.1 194444714 4270638..4271360 1 NC_011080.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; regulatory protein 4271360 423368004477 SNSL254_A4397 Salmonella enterica subsp. enterica serovar Newport str. SL254 regulatory protein YP_002043330.1 4270638 D 423368 CDS YP_002043331.1 194446233 4271458..4271769 1 NC_011080.1 hypothetical protein 4271769 423368004478 SNSL254_A4398 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043331.1 4271458 D 423368 CDS YP_002043332.1 194443190 complement(4271859..4272209) 1 NC_011080.1 identified by match to protein family HMM PF07883; polyketide synthase 4272209 423368004479 SNSL254_A4399 Salmonella enterica subsp. enterica serovar Newport str. SL254 polyketide synthase YP_002043332.1 4271859 R 423368 CDS YP_002043333.1 194443317 complement(4272223..4273773) 1 NC_011080.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; autoinducer-2 (AI-2) kinase 4273773 423368004480 SNSL254_A4400 Salmonella enterica subsp. enterica serovar Newport str. SL254 autoinducer-2 (AI-2) kinase YP_002043333.1 4272223 R 423368 CDS YP_002043334.1 194442565 complement(4273902..4274861) 1 NC_011080.1 identified by match to protein family HMM PF04198; sugar-binding domain-containing protein 4274861 423368004481 SNSL254_A4401 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar-binding domain-containing protein YP_002043334.1 4273902 R 423368 CDS YP_002043335.1 194443203 complement(4274988..4275131) 1 NC_011080.1 identified by glimmer; hypothetical protein 4275131 423368004482 SNSL254_A4403 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043335.1 4274988 R 423368 CDS YP_002043336.1 194442560 4275117..4276652 1 NC_011080.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein ego 4276652 423368004483 SNSL254_A4402 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein ego YP_002043336.1 4275117 D 423368 CDS YP_002043337.1 194444513 4276646..4277689 1 NC_011080.1 identified by match to protein family HMM PF02653; ABC transporter permease 4277689 423368004484 SNSL254_A4404 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002043337.1 4276646 D 423368 CDS YP_002043338.1 194446742 4277689..4278687 1 NC_011080.1 identified by match to protein family HMM PF02653; ABC transporter permease 4278687 423368004485 SNSL254_A4405 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter permease YP_002043338.1 4277689 D 423368 CDS YP_002043339.1 194443580 4278695..4279738 1 NC_011080.1 hypothetical protein 4279738 423368004486 SNSL254_A4406 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043339.1 4278695 D 423368 CDS YP_002043340.1 194445272 4279767..4280642 1 NC_011080.1 identified by match to protein family HMM PF01791; aldolase 4280642 423368004487 SNSL254_A4407 Salmonella enterica subsp. enterica serovar Newport str. SL254 aldolase YP_002043340.1 4279767 D 423368 CDS YP_002043341.1 194446433 4280722..4281015 1 NC_011080.1 identified by match to protein family HMM PF03992; autoinducer-2 (AI-2) modifying protein LsrG 4281015 423368004488 SNSL254_A4408 Salmonella enterica subsp. enterica serovar Newport str. SL254 autoinducer-2 (AI-2) modifying protein LsrG YP_002043341.1 4280722 D 423368 CDS YP_002043342.1 194445790 4281025..4281789 1 NC_011080.1 identified by match to protein family HMM PF00834; epimerase 4281789 423368004489 SNSL254_A4409 Salmonella enterica subsp. enterica serovar Newport str. SL254 epimerase YP_002043342.1 4281025 D 423368 CDS YP_002043343.1 194444811 complement(4281881..4282648) 1 NC_011080.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4282648 tpiA 423368004490 tpiA Salmonella enterica subsp. enterica serovar Newport str. SL254 triosephosphate isomerase YP_002043343.1 4281881 R 423368 CDS YP_002043344.1 194444722 complement(4282761..4283357) 1 NC_011080.1 identified by match to protein family HMM PF07305; hypothetical protein 4283357 423368004491 SNSL254_A4411 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043344.1 4282761 R 423368 CDS YP_002043345.1 194445280 4283458..4283886 1 NC_011080.1 identified by match to protein family HMM PF05656; hypothetical protein 4283886 423368004492 SNSL254_A4412 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043345.1 4283458 D 423368 CDS YP_002043346.1 194445448 complement(4283992..4284738) 1 NC_011080.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin-NADP reductase 4284738 423368004493 SNSL254_A4413 Salmonella enterica subsp. enterica serovar Newport str. SL254 ferredoxin-NADP reductase YP_002043346.1 4283992 R 423368 CDS YP_002043347.1 194443949 complement(4284835..4285845) 1 NC_011080.1 'type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese'; fructose 1,6-bisphosphatase II 4285845 glpX 423368004494 glpX Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose 1,6-bisphosphatase II YP_002043347.1 4284835 R 423368 CDS YP_002043348.1 194442401 complement(4285957..4287465) 1 NC_011080.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4287465 glpK 423368004495 glpK Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol kinase YP_002043348.1 4285957 R 423368 CDS YP_002043349.1 194446319 complement(4287486..4288331) 1 NC_011080.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 4288331 glpF 423368004496 glpF Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol uptake facilitator protein YP_002043349.1 4287486 R 423368 CDS YP_002043350.1 194444671 4288730..4288969 1 NC_011080.1 identified by match to protein family HMM PF06005; hypothetical protein 4288969 423368004497 SNSL254_A4417 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043350.1 4288730 D 423368 CDS YP_002043351.1 194442762 complement(4289054..4289194) 1 NC_011080.1 identified by glimmer; hypothetical protein 4289194 423368004498 SNSL254_A4418 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043351.1 4289054 R 423368 CDS YP_002043352.1 194445697 complement(4289191..4289676) 1 NC_011080.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4289676 rraA 423368004499 rraA Salmonella enterica subsp. enterica serovar Newport str. SL254 ribonuclease activity regulator protein RraA YP_002043352.1 4289191 R 423368 CDS YP_002043353.1 194443749 complement(4289769..4290710) 1 NC_011080.1 'catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate'; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4290710 menA 423368004500 menA Salmonella enterica subsp. enterica serovar Newport str. SL254 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_002043353.1 4289769 R 423368 CDS YP_002043354.1 194444107 complement(4290765..4292096) 1 NC_011080.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4292096 hslU 423368004501 hslU Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent protease ATP-binding subunit HslU YP_002043354.1 4290765 R 423368 CDS YP_002043355.1 194446683 complement(4292106..4292636) 1 NC_011080.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4292636 hslV 423368004502 hslV Salmonella enterica subsp. enterica serovar Newport str. SL254 ATP-dependent protease peptidase subunit YP_002043355.1 4292106 R 423368 CDS YP_002043356.1 194445756 complement(4292728..4293714) 1 NC_011080.1 identified by match to protein family HMM PF05036; match to protein family HMM TIGR02223; cell division protein FtsN 4293714 ftsN 423368004503 ftsN Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein FtsN YP_002043356.1 4292728 R 423368 CDS YP_002043357.1 194442800 complement(4293808..4294833) 1 NC_011080.1 'negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins'; DNA-binding transcriptional regulator CytR 4294833 cytR 423368004504 cytR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator CytR YP_002043357.1 4293808 R 423368 CDS YP_002043358.1 194442479 complement(4294988..4297186) 1 NC_011080.1 'binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity'; primosome assembly protein PriA 4297186 423368004505 SNSL254_A4425 Salmonella enterica subsp. enterica serovar Newport str. SL254 primosome assembly protein PriA YP_002043358.1 4294988 R 423368 CDS YP_002043359.1 194444203 4297390..4297602 1 NC_011080.1 'RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome'; 50S ribosomal protein L31 4297602 rpmE 423368004506 rpmE Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L31 YP_002043359.1 4297390 D 423368 CDS YP_002043360.1 194445472 complement(4297648..4298310) 1 NC_011080.1 identified by match to protein family HMM PF09601; match to protein family HMM TIGR02117; hypothetical protein 4298310 423368004507 SNSL254_A4427 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043360.1 4297648 R 423368 CDS YP_002043361.1 194446105 complement(4298511..4300208) 1 NC_011080.1 identified by match to protein family HMM PF05935; arylsulfotransferase 4300208 423368004508 SNSL254_A4429 Salmonella enterica subsp. enterica serovar Newport str. SL254 arylsulfotransferase YP_002043361.1 4298511 R 423368 CDS YP_002043363.1 194442271 complement(4300758..4301075) 1 NC_011080.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4301075 metJ 423368004509 metJ Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional repressor protein MetJ YP_002043363.1 4300758 R 423368 CDS YP_002043364.1 194444188 4301340..4302500 1 NC_011080.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4302500 metB 423368004510 metB Salmonella enterica subsp. enterica serovar Newport str. SL254 cystathionine gamma-synthase YP_002043364.1 4301340 D 423368 CDS YP_002043365.1 194445168 4302503..4304935 1 NC_011080.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4304935 metL 423368004511 metL Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_002043365.1 4302503 D 423368 CDS YP_002043366.1 194444507 complement(4305051..4305908) 1 NC_011080.1 identified by match to protein family HMM PF00924; match to protein family HMM PF05552; mechanosensitive ion channel protein MscS 4305908 423368004512 SNSL254_A4433 Salmonella enterica subsp. enterica serovar Newport str. SL254 mechanosensitive ion channel protein MscS YP_002043366.1 4305051 R 423368 CDS YP_002043367.1 194446494 complement(4305911..4306909) 1 NC_011080.1 hypothetical protein 4306909 423368004513 SNSL254_A4434 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043367.1 4305911 R 423368 CDS YP_002043368.1 194446636 complement(4307144..4308268) 1 NC_011080.1 hypothetical protein 4308268 423368004514 SNSL254_A4435 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043368.1 4307144 R 423368 CDS YP_002043369.1 194443232 4308404..4309960 1 NC_011080.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 4309960 423368004515 SNSL254_A4436 Salmonella enterica subsp. enterica serovar Newport str. SL254 5'-nucleotidase YP_002043369.1 4308404 D 423368 CDS YP_002043370.1 194442743 4310155..4311045 1 NC_011080.1 'MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor'; 5,10-methylenetetrahydrofolate reductase 4311045 metF 423368004516 metF Salmonella enterica subsp. enterica serovar Newport str. SL254 5,10-methylenetetrahydrofolate reductase YP_002043370.1 4310155 D 423368 CDS YP_002043371.1 194444257 4311210..4313390 1 NC_011080.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 4313390 katG 423368004517 katG Salmonella enterica subsp. enterica serovar Newport str. SL254 catalase/peroxidase HPI YP_002043371.1 4311210 D 423368 CDS YP_002043372.1 194443746 complement(4313448..4314071) 1 NC_011080.1 identified by match to protein family HMM PF06940; NADH:ubiquinone oxidoreductase, na 4314071 423368004518 SNSL254_A4439 Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH:ubiquinone oxidoreductase, na YP_002043372.1 4313448 R 423368 CDS YP_002043373.1 194445289 complement(4314330..4315433) 1 NC_011080.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 4315433 gldA 423368004519 gldA Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol dehydrogenase YP_002043373.1 4314330 R 423368 CDS YP_002043374.1 194444756 complement(4315445..4316107) 1 NC_011080.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 4316107 fsaB 423368004520 fsaB Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose-6-phosphate aldolase YP_002043374.1 4315445 R 423368 CDS YP_002043375.1 194445263 complement(4316118..4318607) 1 NC_011080.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; multiphosphoryl transfer protein 2 4318607 423368004521 SNSL254_A4442 Salmonella enterica subsp. enterica serovar Newport str. SL254 multiphosphoryl transfer protein 2 YP_002043375.1 4316118 R 423368 CDS YP_002043376.1 194442482 4318928..4320007 1 NC_011080.1 'FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site'; PTS system fructose transporter subunit IIC 4320007 423368004522 SNSL254_A4443 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system fructose transporter subunit IIC YP_002043376.1 4318928 D 423368 CDS YP_002043377.1 194446548 4320022..4320342 1 NC_011080.1 'FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS'; PTS system fructose-like transporter subunit IIB 4320342 423368004523 SNSL254_A4444 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system fructose-like transporter subunit IIB YP_002043377.1 4320022 D 423368 CDS YP_002043378.1 194443697 4320441..4322738 1 NC_011080.1 involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; formate acetyltransferase 2 4322738 pflD 423368004524 pflD Salmonella enterica subsp. enterica serovar Newport str. SL254 formate acetyltransferase 2 YP_002043378.1 4320441 D 423368 CDS YP_002043379.1 194443202 4322704..4323582 1 NC_011080.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; pyruvate formate lyase II activase 4323582 423368004525 SNSL254_A4446 Salmonella enterica subsp. enterica serovar Newport str. SL254 pyruvate formate lyase II activase YP_002043379.1 4322704 D 423368 CDS YP_002043380.1 194446747 4323584..4323937 1 NC_011080.1 'FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog'; fructose-like phosphotransferase EIIB subunit 3 4323937 423368004526 SNSL254_A4447 Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose-like phosphotransferase EIIB subunit 3 YP_002043380.1 4323584 D 423368 CDS YP_002043381.1 194445045 complement(4323924..4324775) 1 NC_011080.1 identified by match to protein family HMM PF00165; araC family transcriptional regulator 4324775 423368004527 SNSL254_A4448 Salmonella enterica subsp. enterica serovar Newport str. SL254 araC family transcriptional regulator YP_002043381.1 4323924 R 423368 CDS YP_002043382.1 194446029 complement(4324936..4326669) 1 NC_011080.1 identified by match to protein family HMM PF00884; hypothetical protein 4326669 423368004528 SNSL254_A4449 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043382.1 4324936 R 423368 CDS YP_002043383.1 194443060 complement(4326880..4329531) 1 NC_011080.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4329531 ppc 423368004529 ppc Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoenolpyruvate carboxylase YP_002043383.1 4326880 R 423368 CDS YP_002043384.1 194442464 complement(4329900..4331051) 1 NC_011080.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4331051 argE 423368004530 argE Salmonella enterica subsp. enterica serovar Newport str. SL254 acetylornithine deacetylase YP_002043384.1 4329900 R 423368 CDS YP_002043385.1 194445279 4331140..4332144 1 NC_011080.1 'catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate'; N-acetyl-gamma-glutamyl-phosphate reductase 4332144 argC 423368004531 argC Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetyl-gamma-glutamyl-phosphate reductase YP_002043385.1 4331140 D 423368 CDS YP_002043386.1 194444582 4332155..4332928 1 NC_011080.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4332928 argB 423368004532 argB Salmonella enterica subsp. enterica serovar Newport str. SL254 acetylglutamate kinase YP_002043386.1 4332155 D 423368 CDS YP_002043387.1 194443574 4333045..4334421 1 NC_011080.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4334421 argH 423368004533 argH Salmonella enterica subsp. enterica serovar Newport str. SL254 argininosuccinate lyase YP_002043387.1 4333045 D 423368 CDS YP_002043388.1 194442679 4334705..4335622 1 NC_011080.1 'Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA'; DNA-binding transcriptional regulator OxyR 4335622 oxyR 423368004535 oxyR Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator OxyR YP_002043388.1 4334705 D 423368 CDS YP_002043389.1 194445226 complement(4335605..4337017) 1 NC_011080.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4337017 sthA 423368004536 sthA Salmonella enterica subsp. enterica serovar Newport str. SL254 soluble pyridine nucleotide transhydrogenase YP_002043389.1 4335605 R 423368 CDS YP_008083661.1 513538142 4337207..4337839 1 NC_011080.1 fatty acid biosynthesis regulator 4337839 fabR 423368004537 fabR Salmonella enterica subsp. enterica serovar Newport str. SL254 fatty acid biosynthesis regulator YP_008083661.1 4337207 D 423368 CDS YP_002043390.1 194443260 4337855..4338214 1 NC_011080.1 identified by match to protein family HMM PF07226; hypothetical protein 4338214 423368004538 SNSL254_A4459 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043390.1 4337855 D 423368 CDS YP_002043391.1 194442689 complement(4338261..4339361) 1 NC_011080.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4339361 trmA 423368004539 trmA Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA (uracil-5-)-methyltransferase YP_002043391.1 4338261 R 423368 CDS YP_002043392.1 194444621 4339735..4341579 1 NC_011080.1 involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4341579 btuB 423368004540 btuB Salmonella enterica subsp. enterica serovar Newport str. SL254 vitamin B12/cobalamin outer membrane transporter YP_002043392.1 4339735 D 423368 CDS YP_002043393.2 448967561 4341524..4342375 1 NC_011080.1 'converts L-glutamate to D-glutamate, a component of peptidoglycan'; glutamate racemase 4342375 murI 423368004541 murI Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate racemase YP_002043393.2 4341524 D 423368 CDS YP_002043394.1 194443092 4348126..4349154 1 NC_011080.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4349154 murB 423368004546 murB Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002043394.1 4348126 D 423368 CDS YP_002043395.1 194443558 4349151..4350113 1 NC_011080.1 'catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon'; biotin--protein ligase 4350113 423368004547 SNSL254_A4471 Salmonella enterica subsp. enterica serovar Newport str. SL254 biotin--protein ligase YP_002043395.1 4349151 D 423368 CDS YP_002043396.1 194446499 complement(4350148..4351098) 1 NC_011080.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4351098 coaA 423368004548 coaA Salmonella enterica subsp. enterica serovar Newport str. SL254 pantothenate kinase YP_002043396.1 4350148 R 423368 CDS YP_002043398.1 194445144 4352057..4353241 1 NC_011080.1 'EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu'; elongation factor Tu 4353241 tuf1 423368004553 tuf1 Salmonella enterica subsp. enterica serovar Newport str. SL254 elongation factor Tu YP_002043398.1 4352057 D 423368 CDS YP_002043399.1 194444349 4353471..4353854 1 NC_011080.1 'forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force'; preprotein translocase subunit SecE 4353854 secE 423368004554 secE Salmonella enterica subsp. enterica serovar Newport str. SL254 preprotein translocase subunit SecE YP_002043399.1 4353471 D 423368 CDS YP_002043400.1 194442714 4353856..4354401 1 NC_011080.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4354401 nusG 423368004555 nusG Salmonella enterica subsp. enterica serovar Newport str. SL254 transcription antitermination protein NusG YP_002043400.1 4353856 D 423368 CDS YP_002043401.1 194443215 4354559..4354987 1 NC_011080.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4354987 rplK 423368004556 rplK Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L11 YP_002043401.1 4354559 D 423368 CDS YP_002043402.1 194445310 4354991..4355695 1 NC_011080.1 'in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA'; 50S ribosomal protein L1 4355695 rplA 423368004557 rplA Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L1 YP_002043402.1 4354991 D 423368 CDS YP_002043403.1 194444696 4356115..4356612 1 NC_011080.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4356612 rplJ 423368004558 rplJ Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L10 YP_002043403.1 4356115 D 423368 CDS YP_002043404.1 194442513 4356679..4357044 1 NC_011080.1 'present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors'; 50S ribosomal protein L7/L12 4357044 rplL 423368004559 rplL Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L7/L12 YP_002043404.1 4356679 D 423368 CDS YP_002043405.1 194444496 4357362..4361390 1 NC_011080.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4361390 rpoB 423368004561 rpoB Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-directed RNA polymerase subunit beta YP_002043405.1 4357362 D 423368 CDS YP_002043406.1 194446147 4361467..4365690 1 NC_011080.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4365690 rpoC 423368004562 rpoC Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-directed RNA polymerase subunit beta' YP_002043406.1 4361467 D 423368 CDS YP_002043407.1 194443535 complement(4367159..4368292) 1 NC_011080.1 'in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center'; thiamine biosynthesis protein ThiH 4368292 thiH 423368004563 thiH Salmonella enterica subsp. enterica serovar Newport str. SL254 thiamine biosynthesis protein ThiH YP_002043407.1 4367159 R 423368 CDS YP_002043408.1 194443630 complement(4368289..4369074) 1 NC_011080.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4369074 thiG 423368004564 thiG Salmonella enterica subsp. enterica serovar Newport str. SL254 thiazole synthase YP_002043408.1 4368289 R 423368 CDS YP_002043409.1 194445771 complement(4369061..4369261) 1 NC_011080.1 'with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate'; sulfur carrier protein ThiS 4369261 thiS 423368004565 thiS Salmonella enterica subsp. enterica serovar Newport str. SL254 sulfur carrier protein ThiS YP_002043409.1 4369061 R 423368 CDS YP_002043410.1 194446256 complement(4369242..4370000) 1 NC_011080.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356; thiazole biosynthesis adenylyltransferase ThiF 4370000 thiF 423368004566 thiF Salmonella enterica subsp. enterica serovar Newport str. SL254 thiazole biosynthesis adenylyltransferase ThiF YP_002043410.1 4369242 R 423368 CDS YP_002043411.1 194442677 complement(4369993..4370628) 1 NC_011080.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 4370628 thiE 423368004567 thiE Salmonella enterica subsp. enterica serovar Newport str. SL254 thiamine-phosphate pyrophosphorylase YP_002043411.1 4369993 R 423368 CDS YP_002043412.1 194442345 complement(4370628..4372523) 1 NC_011080.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4372523 thiC 423368004568 thiC Salmonella enterica subsp. enterica serovar Newport str. SL254 thiamine biosynthesis protein ThiC YP_002043412.1 4370628 R 423368 CDS YP_002043413.1 194443698 complement(4372887..4373375) 1 NC_011080.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4373375 423368004569 SNSL254_A4498 Salmonella enterica subsp. enterica serovar Newport str. SL254 anti-RNA polymerase sigma 70 factor YP_002043413.1 4372887 R 423368 CDS YP_002043414.1 194444230 4373468..4374241 1 NC_011080.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4374241 nudC 423368004570 nudC Salmonella enterica subsp. enterica serovar Newport str. SL254 NADH pyrophosphatase YP_002043414.1 4373468 D 423368 CDS YP_002043415.1 194445303 4374282..4375346 1 NC_011080.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4375346 hemE 423368004571 hemE Salmonella enterica subsp. enterica serovar Newport str. SL254 uroporphyrinogen decarboxylase YP_002043415.1 4374282 D 423368 CDS YP_002043416.1 194444563 4375356..4376027 1 NC_011080.1 'Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures'; endonuclease V 4376027 nfi 423368004572 nfi Salmonella enterica subsp. enterica serovar Newport str. SL254 endonuclease V YP_002043416.1 4375356 D 423368 CDS YP_002043417.1 194444880 4376069..4376659 1 NC_011080.1 identified by match to protein family HMM PF04222; hypothetical protein 4376659 423368004573 SNSL254_A4502 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043417.1 4376069 D 423368 CDS YP_002043418.1 194445718 4376846..4377118 1 NC_011080.1 histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4377118 hupA 423368004574 hupA Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator HU subunit alpha YP_002043418.1 4376846 D 423368 CDS YP_002043419.1 194446295 4377130..4377822 1 NC_011080.1 identified by match to protein family HMM PF07356; hypothetical protein 4377822 423368004575 SNSL254_A4504 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043419.1 4377130 D 423368 CDS YP_002043420.1 194445791 complement(4377864..4378319) 1 NC_011080.1 zinc resistance protein 4378319 zraP 423368004576 zraP Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc resistance protein YP_002043420.1 4377864 R 423368 CDS YP_002043421.1 194446308 4378573..4379970 1 NC_011080.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein ZraS 4379970 423368004577 SNSL254_A4506 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor protein ZraS YP_002043421.1 4378573 D 423368 CDS YP_002043422.1 194442721 4379976..4381301 1 NC_011080.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4381301 423368004578 SNSL254_A4507 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulatory protein ZraR YP_002043422.1 4379976 D 423368 CDS YP_002043423.1 194445679 complement(4381298..4382587) 1 NC_011080.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4382587 purD 423368004579 purD Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoribosylamine--glycine ligase YP_002043423.1 4381298 R 423368 CDS YP_002043424.1 194444373 complement(4382603..4384192) 1 NC_011080.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4384192 purH 423368004580 purH Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_002043424.1 4382603 R 423368 CDS YP_002043425.1 194446398 complement(4390405..4390842) 1 NC_011080.1 identified by match to protein family HMM PF00583; hypothetical protein 4390842 423368004585 SNSL254_A4517 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043425.1 4390405 R 423368 CDS YP_002043426.1 194442933 4390999..4391928 1 NC_011080.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4391928 metA 423368004586 metA Salmonella enterica subsp. enterica serovar Newport str. SL254 homoserine O-succinyltransferase YP_002043426.1 4390999 D 423368 CDS YP_002043427.1 194442437 4392194..4393798 1 NC_011080.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4393798 aceB 423368004587 aceB Salmonella enterica subsp. enterica serovar Newport str. SL254 malate synthase YP_002043427.1 4392194 D 423368 CDS YP_002043428.1 194443373 4393830..4395134 1 NC_011080.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346; isocitrate lyase 4395134 aceA 423368004588 aceA Salmonella enterica subsp. enterica serovar Newport str. SL254 isocitrate lyase YP_002043428.1 4393830 D 423368 CDS YP_002043429.1 194443027 4395138..4395260 1 NC_011080.1 hypothetical protein 4395260 423368004589 SNSL254_A4521 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043429.1 4395138 D 423368 CDS YP_002043430.1 194444326 4395236..4396987 1 NC_011080.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 4396987 aceK 423368004590 aceK Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional isocitrate dehydrogenase kinase/phosphatase YP_002043430.1 4395236 D 423368 CDS YP_002043431.1 194444704 complement(4396951..4397385) 1 NC_011080.1 identified by match to protein family HMM PF04266; hypothetical protein 4397385 423368004591 SNSL254_A4523 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043431.1 4396951 R 423368 CDS YP_002043432.1 194445490 complement(4397369..4398193) 1 NC_011080.1 'regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase'; IclR family transcriptional regulator 4398193 423368004592 SNSL254_A4524 Salmonella enterica subsp. enterica serovar Newport str. SL254 IclR family transcriptional regulator YP_002043432.1 4397369 R 423368 CDS YP_002043433.1 194444829 complement(4398317..4398448) 1 NC_011080.1 identified by glimmer; hypothetical protein 4398448 423368004593 SNSL254_A4525 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043433.1 4398317 R 423368 CDS YP_002043434.1 194446786 4398497..4402180 1 NC_011080.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4402180 metH 423368004594 metH Salmonella enterica subsp. enterica serovar Newport str. SL254 B12-dependent methionine synthase YP_002043434.1 4398497 D 423368 CDS YP_002043435.1 194446114 4402447..4404078 1 NC_011080.1 identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; match to protein family HMM TIGR01013; sodium-dependent inorganic phosphate 4404078 423368004595 SNSL254_A4527 Salmonella enterica subsp. enterica serovar Newport str. SL254 sodium-dependent inorganic phosphate YP_002043435.1 4402447 D 423368 CDS YP_002043436.1 194445800 complement(4404168..4404857) 1 NC_011080.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 4404857 423368004596 SNSL254_A4528 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidase E YP_002043436.1 4404168 R 423368 CDS YP_002043437.1 194445598 4405065..4405604 1 NC_011080.1 nucleoprotein/polynucleotide-associated enzyme 4405604 423368004597 SNSL254_A4529 Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleoprotein/polynucleotide-associated enzyme YP_002043437.1 4405065 D 423368 CDS YP_002043438.1 194442736 4405651..4406520 1 NC_011080.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4406520 423368004598 SNSL254_A4530 Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA pseudouridine synthase F YP_002043438.1 4405651 D 423368 CDS YP_002043439.1 194443231 complement(4406517..4406789) 1 NC_011080.1 hypothetical protein 4406789 423368004599 SNSL254_A4531 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043439.1 4406517 R 423368 CDS YP_002043440.1 194444242 complement(4406852..4407610) 1 NC_011080.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family regulatory protein 4407610 423368004600 SNSL254_A4532 Salmonella enterica subsp. enterica serovar Newport str. SL254 DeoR family regulatory protein YP_002043440.1 4406852 R 423368 CDS YP_002043441.1 194443709 complement(4407597..4408460) 1 NC_011080.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein 4408460 423368004601 SNSL254_A4533 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043441.1 4407597 R 423368 CDS YP_002043442.1 194444006 complement(4408477..4409316) 1 NC_011080.1 hypothetical protein 4409316 423368004602 SNSL254_A4534 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043442.1 4408477 R 423368 CDS YP_002043443.1 194443353 complement(4409340..4410929) 1 NC_011080.1 hypothetical protein 4410929 423368004603 SNSL254_A4535 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043443.1 4409340 R 423368 CDS YP_002043444.1 194445642 complement(4411352..4411867) 1 NC_011080.1 identified by match to protein family HMM PF02413; tail assembly chaperone gp38 4411867 423368004604 SNSL254_A4536 Salmonella enterica subsp. enterica serovar Newport str. SL254 tail assembly chaperone gp38 YP_002043444.1 4411352 R 423368 CDS YP_002043445.1 194444988 complement(4411877..4413358) 1 NC_011080.1 identified by match to protein family HMM PF03406; gp19 4413358 423368004605 SNSL254_A4537 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp19 YP_002043445.1 4411877 R 423368 CDS YP_002043446.1 194442273 complement(4413361..4413993) 1 NC_011080.1 identified by match to protein family HMM PF09684; match to protein family HMM TIGR01634; phage tail protein 4413993 423368004606 SNSL254_A4538 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail protein YP_002043446.1 4413361 R 423368 CDS YP_002043447.1 194446311 complement(4413986..4415101) 1 NC_011080.1 identified by match to protein family HMM PF04865; hypothetical protein 4415101 423368004607 SNSL254_A4539 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043447.1 4413986 R 423368 CDS YP_002043448.1 194446073 complement(4415092..4415451) 1 NC_011080.1 identified by match to protein family HMM PF04965; baseplate 4415451 423368004608 SNSL254_A4540 Salmonella enterica subsp. enterica serovar Newport str. SL254 baseplate YP_002043448.1 4415092 R 423368 CDS YP_002043449.1 194445047 4415512..4415634 1 NC_011080.1 identified by glimmer; hypothetical protein 4415634 423368004609 SNSL254_A4541 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043449.1 4415512 D 423368 CDS YP_002043450.1 194445328 complement(4415615..4417153) 1 NC_011080.1 hypothetical protein 4417153 423368004610 SNSL254_A4542 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043450.1 4415615 R 423368 CDS YP_002043451.1 194444285 complement(4417162..4418091) 1 NC_011080.1 identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase 4418091 423368004611 SNSL254_A4543 Salmonella enterica subsp. enterica serovar Newport str. SL254 bactoprenol glucosyl transferase YP_002043451.1 4417162 R 423368 CDS YP_002043452.1 194442258 complement(4418088..4418450) 1 NC_011080.1 identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase 4418450 423368004612 SNSL254_A4544 Salmonella enterica subsp. enterica serovar Newport str. SL254 bactoprenol-linked glucose translocase YP_002043452.1 4418088 R 423368 CDS YP_002043453.1 194444141 complement(4418526..4418765) 1 NC_011080.1 identified by glimmer; hypothetical protein 4418765 423368004613 SNSL254_A4545 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043453.1 4418526 R 423368 CDS YP_002043454.1 194443878 complement(4418774..4419496) 1 NC_011080.1 identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644; baseplate 4419496 423368004614 SNSL254_A4546 Salmonella enterica subsp. enterica serovar Newport str. SL254 baseplate YP_002043454.1 4418774 R 423368 CDS YP_002043455.1 194445565 complement(4419506..4420549) 1 NC_011080.1 identified by match to protein family HMM PF05954; gp47 4420549 423368004615 SNSL254_A4547 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp47 YP_002043455.1 4419506 R 423368 CDS YP_002043456.1 194444191 complement(4420537..4420746) 1 NC_011080.1 identified by match to protein family HMM PF05489; phage Tail Protein X 4420746 423368004616 SNSL254_A4548 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage Tail Protein X YP_002043456.1 4420537 R 423368 CDS YP_002043457.1 194444569 complement(4420746..4421699) 1 NC_011080.1 identified by match to protein family HMM PF06995; methyl-accepting chemotaxis protein 4421699 423368004617 SNSL254_A4549 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyl-accepting chemotaxis protein YP_002043457.1 4420746 R 423368 CDS YP_002043458.1 194445074 complement(4421699..4424053) 1 NC_011080.1 identified by match to protein family HMM TIGR01760; phage tail protein 4424053 423368004618 SNSL254_A4550 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail protein YP_002043458.1 4421699 R 423368 CDS YP_002043459.1 194445582 complement(4424150..4424278) 1 NC_011080.1 hypothetical protein 4424278 423368004619 SNSL254_A4551 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043459.1 4424150 R 423368 CDS YP_002043460.1 194446083 complement(4424238..4424555) 1 NC_011080.1 hypothetical protein 4424555 423368004620 SNSL254_A4552 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043460.1 4424238 R 423368 CDS YP_002043461.1 194446547 complement(4424607..4425131) 1 NC_011080.1 identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611; phage major tail tube protein 4425131 423368004621 SNSL254_A4553 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage major tail tube protein YP_002043461.1 4424607 R 423368 CDS YP_002043462.1 194442415 complement(4425131..4426558) 1 NC_011080.1 identified by match to protein family HMM PF04984; phage tail sheath protein 4426558 423368004622 SNSL254_A4554 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage tail sheath protein YP_002043462.1 4425131 R 423368 CDS YP_002043463.1 194443771 complement(4426548..4426745) 1 NC_011080.1 gp12 4426745 423368004623 SNSL254_A4555 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp12 YP_002043463.1 4426548 R 423368 CDS YP_002043464.1 194443396 complement(4426742..4427197) 1 NC_011080.1 identified by match to protein family HMM PF09646; hypothetical protein 4427197 423368004624 SNSL254_A4556 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043464.1 4426742 R 423368 CDS YP_002043465.1 194444190 complement(4427357..4427671) 1 NC_011080.1 gp54 4427671 423368004625 SNSL254_A4557 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp54 YP_002043465.1 4427357 R 423368 CDS YP_002043466.1 194445832 complement(4427684..4428289) 1 NC_011080.1 identified by match to protein family HMM PF01464; endolysin 4428289 423368004626 SNSL254_A4558 Salmonella enterica subsp. enterica serovar Newport str. SL254 endolysin YP_002043466.1 4427684 R 423368 CDS YP_002043467.1 194446492 complement(4428292..4428579) 1 NC_011080.1 gp51 4428579 423368004627 SNSL254_A4559 Salmonella enterica subsp. enterica serovar Newport str. SL254 gp51 YP_002043467.1 4428292 R 423368 CDS YP_002043468.1 194445870 4428806..4428937 1 NC_011080.1 identified by glimmer; hypothetical protein 4428937 423368004628 SNSL254_A4560 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043468.1 4428806 D 423368 CDS YP_002043469.1 194446521 4429157..4429504 1 NC_011080.1 identified by match to protein family HMM PF08765; DNA-binding protein RdgB 4429504 423368004629 SNSL254_A4561 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding protein RdgB YP_002043469.1 4429157 D 423368 CDS YP_002043470.1 194444588 complement(4429635..4430984) 1 NC_011080.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase 4430984 lysC 423368004630 lysC Salmonella enterica subsp. enterica serovar Newport str. SL254 aspartate kinase YP_002043470.1 4429635 R 423368 CDS YP_002043471.1 194443805 4431329..4432978 1 NC_011080.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4432978 pgi 423368004631 pgi Salmonella enterica subsp. enterica serovar Newport str. SL254 glucose-6-phosphate isomerase YP_002043471.1 4431329 D 423368 CDS YP_002043472.1 194444457 4433419..4433664 1 NC_011080.1 hypothetical protein 4433664 423368004632 SNSL254_A4564 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043472.1 4433419 D 423368 CDS YP_002043473.1 194442530 4433728..4434366 1 NC_011080.1 hypothetical protein 4434366 423368004633 SNSL254_A4565 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043473.1 4433728 D 423368 CDS YP_002043474.1 194443136 4434363..4435100 1 NC_011080.1 identified by match to protein family HMM PF06251; hypothetical protein 4435100 423368004634 SNSL254_A4566 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043474.1 4434363 D 423368 CDS YP_002043475.1 194445822 4435100..4437196 1 NC_011080.1 identified by match to protein family HMM PF06082; lipoprotein 4437196 423368004635 SNSL254_A4567 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002043475.1 4435100 D 423368 CDS YP_002043476.1 194445948 4437339..4437749 1 NC_011080.1 identified by match to protein family HMM PF06146; phosphate-starvation-inducible protein PsiE 4437749 423368004636 SNSL254_A4568 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphate-starvation-inducible protein PsiE YP_002043476.1 4437339 D 423368 CDS YP_002043477.1 194443114 complement(4437915..4438805) 1 NC_011080.1 with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 4438805 malG 423368004637 malG Salmonella enterica subsp. enterica serovar Newport str. SL254 maltose transporter permease YP_002043477.1 4437915 R 423368 CDS YP_002043478.1 194442589 complement(4438820..4440364) 1 NC_011080.1 with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 4440364 malF 423368004638 malF Salmonella enterica subsp. enterica serovar Newport str. SL254 maltose transporter membrane protein YP_002043478.1 4438820 R 423368 CDS YP_002043479.1 194443938 4440363..4440503 1 NC_011080.1 identified by glimmer; hypothetical protein 4440503 423368004639 SNSL254_A4570 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043479.1 4440363 D 423368 CDS YP_002043480.1 194444452 complement(4440496..4441686) 1 NC_011080.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein 4441686 malE 423368004640 malE Salmonella enterica subsp. enterica serovar Newport str. SL254 maltose ABC transporter substrate-binding protein YP_002043480.1 4440496 R 423368 CDS YP_002043481.1 194443440 4442048..4443157 1 NC_011080.1 with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4443157 malK 423368004641 malK Salmonella enterica subsp. enterica serovar Newport str. SL254 maltose/maltodextrin transporter ATP-binding protein YP_002043481.1 4442048 D 423368 CDS YP_002043482.1 194445221 4443246..4444604 1 NC_011080.1 porin involved in the transport of maltose and maltodextrins; maltoporin 4444604 lamB 423368004642 lamB Salmonella enterica subsp. enterica serovar Newport str. SL254 maltoporin YP_002043482.1 4443246 D 423368 CDS YP_002043483.1 194445706 4444768..4445685 1 NC_011080.1 identified by match to protein family HMM PF07148; maltose regulon periplasmic protein 4445685 malM 423368004643 malM Salmonella enterica subsp. enterica serovar Newport str. SL254 maltose regulon periplasmic protein YP_002043483.1 4444768 D 423368 CDS YP_002043484.1 194443045 4445866..4446363 1 NC_011080.1 catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4446363 ubiC 423368004644 ubiC Salmonella enterica subsp. enterica serovar Newport str. SL254 chorismate pyruvate lyase YP_002043484.1 4445866 D 423368 CDS YP_002043485.1 194442434 4446377..4447249 1 NC_011080.1 'catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway'; 4-hydroxybenzoate octaprenyltransferase 4447249 ubiA 423368004645 ubiA Salmonella enterica subsp. enterica serovar Newport str. SL254 4-hydroxybenzoate octaprenyltransferase YP_002043485.1 4446377 D 423368 CDS YP_002043486.1 194445404 complement(4447348..4449768) 1 NC_011080.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4449768 423368004646 SNSL254_A4578 Salmonella enterica subsp. enterica serovar Newport str. SL254 glycerol-3-phosphate acyltransferase YP_002043486.1 4447348 R 423368 CDS YP_002043487.1 194444860 4449939..4450307 1 NC_011080.1 identified by match to protein family HMM PF01219; diacylglycerol kinase 4450307 dgkA 423368004647 dgkA Salmonella enterica subsp. enterica serovar Newport str. SL254 diacylglycerol kinase YP_002043487.1 4449939 D 423368 CDS YP_002043488.1 194446691 4450416..4451024 1 NC_011080.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4451024 lexA 423368004648 lexA Salmonella enterica subsp. enterica serovar Newport str. SL254 LexA repressor YP_002043488.1 4450416 D 423368 CDS YP_002043489.1 194446191 4451203..4452528 1 NC_011080.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; DNA-damage-inducible SOS response protein 4452528 423368004649 SNSL254_A4581 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-damage-inducible SOS response protein YP_002043489.1 4451203 D 423368 CDS YP_002043490.1 194443290 4452510..4452638 1 NC_011080.1 hypothetical protein 4452638 423368004650 SNSL254_A4582 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043490.1 4452510 D 423368 CDS YP_002043491.1 194442266 4452657..4452869 1 NC_011080.1 unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4452869 423368004651 SNSL254_A4583 Salmonella enterica subsp. enterica serovar Newport str. SL254 stress-response protein YP_002043491.1 4452657 D 423368 CDS YP_002043492.1 194444041 complement(4452969..4453484) 1 NC_011080.1 'Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB'; zinc uptake transcriptional repressor 4453484 423368004652 SNSL254_A4584 Salmonella enterica subsp. enterica serovar Newport str. SL254 zinc uptake transcriptional repressor YP_002043492.1 4452969 R 423368 CDS YP_002043493.1 194444774 4453731..4455041 1 NC_011080.1 conjugative transfer protein 4455041 423368004653 SNSL254_A4585 Salmonella enterica subsp. enterica serovar Newport str. SL254 conjugative transfer protein YP_002043493.1 4453731 D 423368 CDS YP_002043494.1 194446261 4455129..4456127 1 NC_011080.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 4456127 423368004654 SNSL254_A4586 Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA-dihydrouridine synthase A YP_002043494.1 4455129 D 423368 CDS YP_002043495.1 194443299 complement(4456711..4457694) 1 NC_011080.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; quinone oxidoreductase 4457694 423368004656 SNSL254_A4588 Salmonella enterica subsp. enterica serovar Newport str. SL254 quinone oxidoreductase YP_002043495.1 4456711 R 423368 CDS YP_002043496.1 194443549 4457759..4459174 1 NC_011080.1 unwinds double stranded DNA; replicative DNA helicase 4459174 dnaB 423368004657 dnaB Salmonella enterica subsp. enterica serovar Newport str. SL254 replicative DNA helicase YP_002043496.1 4457759 D 423368 CDS YP_002043497.1 194444595 4459206..4460285 1 NC_011080.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4460285 alr 423368004658 alr Salmonella enterica subsp. enterica serovar Newport str. SL254 alanine racemase YP_002043497.1 4459206 D 423368 CDS YP_002043498.1 194444213 complement(4460256..4460387) 1 NC_011080.1 identified by glimmer; hypothetical protein 4460387 423368004659 SNSL254_A4591 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043498.1 4460256 R 423368 CDS YP_002043499.1 194445252 4460471..4461664 1 NC_011080.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4461664 tyrB 423368004660 tyrB Salmonella enterica subsp. enterica serovar Newport str. SL254 aromatic amino acid aminotransferase YP_002043499.1 4460471 D 423368 CDS YP_002043500.1 194446762 4461851..4462564 1 NC_011080.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4462564 aphA 423368004661 aphA Salmonella enterica subsp. enterica serovar Newport str. SL254 acid phosphatase/phosphotransferase YP_002043500.1 4461851 D 423368 CDS YP_002043501.1 194446374 4462693..4463109 1 NC_011080.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 4463109 423368004662 SNSL254_A4594 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043501.1 4462693 D 423368 CDS YP_002043502.1 194444118 4463112..4463468 1 NC_011080.1 identified by match to protein family HMM PF04237; hypothetical protein 4463468 423368004663 SNSL254_A4595 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043502.1 4463112 D 423368 CDS YP_002043503.1 194444917 complement(4463469..4463807) 1 NC_011080.1 hypothetical protein 4463807 423368004664 SNSL254_A4596 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043503.1 4463469 R 423368 CDS YP_002043504.1 194445199 complement(4463794..4464237) 1 NC_011080.1 hypothetical protein 4464237 423368004665 SNSL254_A4597 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043504.1 4463794 R 423368 CDS YP_002043505.1 194446489 complement(4464381..4467206) 1 NC_011080.1 'The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate'; excinuclease ABC subunit A 4467206 uvrA 423368004666 uvrA Salmonella enterica subsp. enterica serovar Newport str. SL254 excinuclease ABC subunit A YP_002043505.1 4464381 R 423368 CDS YP_002043506.1 194442497 4467454..4467984 1 NC_011080.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4467984 ssb2 423368004667 ssb2 Salmonella enterica subsp. enterica serovar Newport str. SL254 single-stranded DNA-binding protein YP_002043506.1 4467454 D 423368 CDS YP_002043507.1 194442963 4468194..4468328 1 NC_011080.1 identified by glimmer; hypothetical protein 4468328 423368004668 SNSL254_A4600 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043507.1 4468194 D 423368 CDS YP_002043508.1 194444483 4468375..4468515 1 NC_011080.1 identified by glimmer; hypothetical protein 4468515 423368004669 SNSL254_A4601 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043508.1 4468375 D 423368 CDS YP_002043509.1 194444833 4469025..4469657 1 NC_011080.1 hypothetical protein 4469657 423368004670 SNSL254_A4602 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043509.1 4469025 D 423368 CDS YP_002043510.1 194444633 4469654..4471042 1 NC_011080.1 integral membrane protein 4471042 423368004671 SNSL254_A4603 Salmonella enterica subsp. enterica serovar Newport str. SL254 integral membrane protein YP_002043510.1 4469654 D 423368 CDS YP_002043511.1 194445157 4471425..4472351 1 NC_011080.1 identified by match to protein family HMM PF02321; type-I secretion protein 4472351 423368004672 SNSL254_A4604 Salmonella enterica subsp. enterica serovar Newport str. SL254 type-I secretion protein YP_002043511.1 4471425 D 423368 CDS YP_002043512.1 194443738 4472375..4473625 1 NC_011080.1 hypothetical protein 4473625 423368004673 SNSL254_A4605 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043512.1 4472375 D 423368 CDS YP_002043513.1 194443519 4473642..4490321 1 NC_011080.1 hypothetical protein 4490321 423368004674 SNSL254_A4606 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043513.1 4473642 D 423368 CDS YP_002043514.1 194444934 4490361..4492427 1 NC_011080.1 identified by match to protein family HMM PF00005; bacteriocin/lantibiotic ABC transporter 4492427 423368004675 SNSL254_A4607 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriocin/lantibiotic ABC transporter YP_002043514.1 4490361 D 423368 CDS YP_007419098.1 448967562 complement(4492705..4492986) 1 NC_011080.1 hypothetical protein 4492986 423368004676 SNSL254_A4608 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_007419098.1 4492705 R 423368 CDS YP_002043515.1 194445416 4493549..4495150 1 NC_011080.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 4495150 423368004677 SNSL254_A4609 Salmonella enterica subsp. enterica serovar Newport str. SL254 cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002043515.1 4493549 D 423368 CDS YP_002043516.1 194444896 complement(4495138..4495461) 1 NC_011080.1 regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS 4495461 423368004678 SNSL254_A4610 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator SoxS YP_002043516.1 4495138 R 423368 CDS YP_002043517.1 194445383 4495548..4496006 1 NC_011080.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR01950; redox-sensitive transcriptional activator SoxR 4496006 soxR 423368004679 soxR Salmonella enterica subsp. enterica serovar Newport str. SL254 redox-sensitive transcriptional activator SoxR YP_002043517.1 4495548 D 423368 CDS YP_002043518.1 194443557 4496299..4496967 1 NC_011080.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 4496967 423368004680 SNSL254_A4612 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathione S-transferase YP_002043518.1 4496299 D 423368 CDS YP_002043519.1 194444070 complement(4497115..4497237) 1 NC_011080.1 identified by glimmer; hypothetical protein 4497237 423368004681 SNSL254_A4613 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043519.1 4497115 R 423368 CDS YP_002043520.1 194442291 4497314..4498663 1 NC_011080.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; inorganic anion transporter, sulfate permease (SulP) family 4498663 423368004682 SNSL254_A4614 Salmonella enterica subsp. enterica serovar Newport str. SL254 inorganic anion transporter, sulfate permease (SulP) family YP_002043520.1 4497314 D 423368 CDS YP_002043521.1 194442232 4498768..4500459 1 NC_011080.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831; Na+/H+ antiporter 4500459 423368004683 SNSL254_A4615 Salmonella enterica subsp. enterica serovar Newport str. SL254 Na+/H+ antiporter YP_002043521.1 4498768 D 423368 CDS YP_002043522.1 194446196 complement(4500554..4501441) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family regulatory protein 4501441 423368004684 SNSL254_A4616 Salmonella enterica subsp. enterica serovar Newport str. SL254 LysR family regulatory protein YP_002043522.1 4500554 R 423368 CDS YP_002043523.1 194446698 4501545..4501955 1 NC_011080.1 identified by match to protein family HMM PF03788; LrgA family protein 4501955 423368004685 SNSL254_A4617 Salmonella enterica subsp. enterica serovar Newport str. SL254 LrgA family protein YP_002043523.1 4501545 D 423368 CDS YP_002043524.1 194445202 4501948..4502637 1 NC_011080.1 identified by match to protein family HMM PF04172; LrgB family protein 4502637 423368004686 SNSL254_A4618 Salmonella enterica subsp. enterica serovar Newport str. SL254 LrgB family protein YP_002043524.1 4501948 D 423368 CDS YP_002043525.1 194444560 complement(4502676..4504325) 1 NC_011080.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 4504325 actP 423368004687 actP Salmonella enterica subsp. enterica serovar Newport str. SL254 acetate permease YP_002043525.1 4502676 R 423368 CDS YP_002043526.1 194444201 complement(4504322..4504636) 1 NC_011080.1 identified by match to protein family HMM PF04341; hypothetical protein 4504636 423368004688 SNSL254_A4620 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043526.1 4504322 R 423368 CDS YP_002043527.1 194442988 complement(4504882..4506840) 1 NC_011080.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4506840 acsA 423368004689 acsA Salmonella enterica subsp. enterica serovar Newport str. SL254 acetyl-CoA synthetase YP_002043527.1 4504882 R 423368 CDS YP_002043528.1 194443176 4507272..4508708 1 NC_011080.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4508708 nrfA 423368004690 nrfA Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c552 YP_002043528.1 4507272 D 423368 CDS YP_002043529.1 194442546 4508753..4509319 1 NC_011080.1 'part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia'; cytochrome c nitrite reductase pentaheme subunit 4509319 nrfB 423368004691 nrfB Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c nitrite reductase pentaheme subunit YP_002043529.1 4508753 D 423368 CDS YP_002043530.1 194446804 4509316..4509987 1 NC_011080.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; match to protein family HMM TIGR03149; cytochrome c nitrite reductase, Fe-S protein 4509987 nrfC 423368004692 nrfC Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c nitrite reductase, Fe-S protein YP_002043530.1 4509316 D 423368 CDS YP_002043531.1 194446321 4509984..4510940 1 NC_011080.1 identified by match to protein family HMM PF03916; match to protein family HMM TIGR03148; cytochrome c nitrite reductase, NrfD subunit 4510940 nrfD 423368004693 nrfD Salmonella enterica subsp. enterica serovar Newport str. SL254 cytochrome c nitrite reductase, NrfD subunit YP_002043531.1 4509984 D 423368 CDS YP_002043532.1 194445798 4510933..4513155 1 NC_011080.1 with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; heme lyase subunit NrfE 4513155 423368004694 SNSL254_A4626 Salmonella enterica subsp. enterica serovar Newport str. SL254 heme lyase subunit NrfE YP_002043532.1 4510933 D 423368 CDS YP_002043533.1 194445115 4513152..4513772 1 NC_011080.1 identified by match to protein family HMM PF07719; formate-dependent nitrite reductase complex subunit NrfG 4513772 423368004695 SNSL254_A4627 Salmonella enterica subsp. enterica serovar Newport str. SL254 formate-dependent nitrite reductase complex subunit NrfG YP_002043533.1 4513152 D 423368 CDS YP_002043534.1 194444642 4514117..4515427 1 NC_011080.1 'carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system'; glutamate/aspartate:proton symporter 4515427 gltP 423368004696 gltP Salmonella enterica subsp. enterica serovar Newport str. SL254 glutamate/aspartate:proton symporter YP_002043534.1 4514117 D 423368 CDS YP_002043535.1 194445386 complement(4515585..4516253) 1 NC_011080.1 identified by match to protein family HMM PF08238; hypothetical protein 4516253 423368004697 SNSL254_A4629 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043535.1 4515585 R 423368 CDS YP_002043536.1 194443966 complement(4518953..4519861) 1 NC_011080.1 identified by match to protein family HMM PF05118; membrane-bound beta-hydroxylase 4519861 lpxO 423368004699 lpxO Salmonella enterica subsp. enterica serovar Newport str. SL254 membrane-bound beta-hydroxylase YP_002043536.1 4518953 R 423368 CDS YP_002043537.1 194442228 complement(4520119..4520553) 1 NC_011080.1 PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase 4520553 423368004700 SNSL254_A4633 Salmonella enterica subsp. enterica serovar Newport str. SL254 aminoalkylphosphonic acid N-acetyltransferase YP_002043537.1 4520119 R 423368 CDS YP_002043538.1 194442958 complement(4520705..4521148) 1 NC_011080.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983; hypothetical protein 4521148 423368004701 SNSL254_A4634 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043538.1 4520705 R 423368 CDS YP_002043539.1 194444767 complement(4521268..4521603) 1 NC_011080.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; hypothetical protein 4521603 phnA 423368004702 phnA Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043539.1 4521268 R 423368 CDS YP_002043540.1 194445267 4522071..4523573 1 NC_011080.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM PF08946; match to protein family HMM TIGR00883; proline/glycine betaine transporter 4523573 423368004703 SNSL254_A4636 Salmonella enterica subsp. enterica serovar Newport str. SL254 proline/glycine betaine transporter YP_002043540.1 4522071 D 423368 CDS YP_002043541.1 194443672 complement(4523740..4524819) 1 NC_011080.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein BasS/PmrB 4524819 423368004704 SNSL254_A4637 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensor protein BasS/PmrB YP_002043541.1 4523740 R 423368 CDS YP_002043542.1 194446648 complement(4524820..4525488) 1 NC_011080.1 response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR 4525488 423368004705 SNSL254_A4638 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator BasR YP_002043542.1 4524820 R 423368 CDS YP_002043543.1 194446305 complement(4525485..4527128) 1 NC_011080.1 with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; cell division protein 4527128 423368004706 SNSL254_A4639 Salmonella enterica subsp. enterica serovar Newport str. SL254 cell division protein YP_002043543.1 4525485 R 423368 CDS YP_002043544.1 194442466 complement(4527262..4528599) 1 NC_011080.1 identified by match to protein family HMM PF00324; arginine:agmatin antiporter 4528599 423368004707 SNSL254_A4640 Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine:agmatin antiporter YP_002043544.1 4527262 R 423368 CDS YP_002043545.1 194443883 complement(4528739..4529500) 1 NC_011080.1 identified by match to protein family HMM PF00165; porin 4529500 423368004708 SNSL254_A4641 Salmonella enterica subsp. enterica serovar Newport str. SL254 porin YP_002043545.1 4528739 R 423368 CDS YP_002043546.1 194444307 complement(4529798..4532068) 1 NC_011080.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; biodegradative arginine decarboxylase 4532068 adiA 423368004709 adiA Salmonella enterica subsp. enterica serovar Newport str. SL254 biodegradative arginine decarboxylase YP_002043546.1 4529798 R 423368 CDS YP_002043547.1 194444626 complement(4532298..4533188) 1 NC_011080.1 identified by match to protein family HMM PF00165; DNA-binding transcriptional regulator MelR 4533188 423368004710 SNSL254_A4643 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator MelR YP_002043547.1 4532298 R 423368 CDS YP_002043548.1 194445609 4533499..4534854 1 NC_011080.1 identified by match to protein family HMM PF02056; alpha-galactosidase 4534854 423368004711 SNSL254_A4644 Salmonella enterica subsp. enterica serovar Newport str. SL254 alpha-galactosidase YP_002043548.1 4533499 D 423368 CDS YP_002043549.1 194444608 4534938..4536368 1 NC_011080.1 identified by match to protein family HMM TIGR00792; melibiose:sodium symporter 4536368 423368004712 SNSL254_A4645 Salmonella enterica subsp. enterica serovar Newport str. SL254 melibiose:sodium symporter YP_002043549.1 4534938 D 423368 CDS YP_002043550.1 194445135 complement(4536466..4538112) 1 NC_011080.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic 4538112 fumB 423368004713 fumB Salmonella enterica subsp. enterica serovar Newport str. SL254 fumarate hydratase class I, anaerobic YP_002043550.1 4536466 R 423368 CDS YP_002043551.1 194445838 complement(4538208..4539548) 1 NC_011080.1 'functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters'; anaerobic C4-dicarboxylate transporter 4539548 dcuB 423368004714 dcuB Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic C4-dicarboxylate transporter YP_002043551.1 4538208 R 423368 CDS YP_002043552.1 194445864 complement(4539695..4539961) 1 NC_011080.1 hypothetical protein 4539961 423368004715 SNSL254_A4648 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043552.1 4539695 R 423368 CDS YP_002043553.1 194444137 complement(4540278..4540997) 1 NC_011080.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR 4540997 423368004716 SNSL254_A4649 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator DcuR YP_002043553.1 4540278 R 423368 CDS YP_002043554.1 194444527 complement(4540994..4542625) 1 NC_011080.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS 4542625 423368004717 SNSL254_A4650 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensory histidine kinase DcuS YP_002043554.1 4540994 R 423368 CDS YP_002043555.1 194443913 4543000..4545429 1 NC_011080.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 4545429 423368004718 SNSL254_A4651 Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic dimethyl sulfoxide reductase subunit A YP_002043555.1 4543000 D 423368 CDS YP_002043556.1 194444405 4545443..4546069 1 NC_011080.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B 4546069 dmsB 423368004719 dmsB Salmonella enterica subsp. enterica serovar Newport str. SL254 dimethylsulfoxide reductase subunit B YP_002043556.1 4545443 D 423368 CDS YP_002043557.1 194442605 4546062..4546835 1 NC_011080.1 identified by match to protein family HMM PF04976; dmso reductase anchor subunit 4546835 dmsC 423368004720 dmsC Salmonella enterica subsp. enterica serovar Newport str. SL254 dmso reductase anchor subunit YP_002043557.1 4546062 D 423368 CDS YP_002043558.1 194443074 4546910..4547503 1 NC_011080.1 identified by match to protein family HMM PF06192; oxidoreductase component 4547503 423368004721 SNSL254_A4654 Salmonella enterica subsp. enterica serovar Newport str. SL254 oxidoreductase component YP_002043558.1 4546910 D 423368 CDS YP_002043559.1 194446049 complement(4547587..4548987) 1 NC_011080.1 identified by match to protein family HMM PF09362; hypothetical protein 4548987 423368004722 SNSL254_A4655 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043559.1 4547587 R 423368 CDS YP_002043561.1 194446296 4549291..4550196 1 NC_011080.1 identified by match to protein family HMM PF06977; hypothetical protein 4550196 423368004723 SNSL254_A4657 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043561.1 4549291 D 423368 CDS YP_002043563.1 194444343 complement(4551032..4551304) 1 NC_011080.1 identified by match to protein family HMM PF00196; GerE family regulatory protein 4551304 423368004725 SNSL254_A4660 Salmonella enterica subsp. enterica serovar Newport str. SL254 GerE family regulatory protein YP_002043563.1 4551032 R 423368 CDS YP_002043564.1 194442792 complement(4551316..4552191) 1 NC_011080.1 identified by match to protein family HMM PF00165; araC family transcriptional regulator 4552191 423368004726 SNSL254_A4661 Salmonella enterica subsp. enterica serovar Newport str. SL254 araC family transcriptional regulator YP_002043564.1 4551316 R 423368 CDS YP_002043565.1 194444999 4552328..4552453 1 NC_011080.1 identified by glimmer; hypothetical protein 4552453 423368004727 SNSL254_A4662 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043565.1 4552328 D 423368 CDS YP_002043566.1 194443466 4552994..4553287 1 NC_011080.1 identified by match to protein family HMM PF08681; hypothetical protein 4553287 423368004728 SNSL254_A4663 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043566.1 4552994 D 423368 CDS YP_002043567.1 194443931 4553284..4553775 1 NC_011080.1 identified by match to protein family HMM PF00583; GNAT family acetyltransferase 4553775 423368004729 SNSL254_A4664 Salmonella enterica subsp. enterica serovar Newport str. SL254 GNAT family acetyltransferase YP_002043567.1 4553284 D 423368 CDS YP_002043568.1 194442262 4553978..4554445 1 NC_011080.1 integrase, catalytic region 4554445 423368004730 SNSL254_A4665 Salmonella enterica subsp. enterica serovar Newport str. SL254 integrase, catalytic region YP_002043568.1 4553978 D 423368 CDS YP_002043569.1 194446195 complement(4555391..4555531) 1 NC_011080.1 identified by glimmer; hypothetical protein 4555531 423368004732 SNSL254_A4667 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043569.1 4555391 R 423368 CDS YP_002043570.1 194446399 4555556..4555861 1 NC_011080.1 identified by match to protein family HMM PF03333; repressor protein 4555861 423368004733 SNSL254_A4668 Salmonella enterica subsp. enterica serovar Newport str. SL254 repressor protein YP_002043570.1 4555556 D 423368 CDS YP_002043571.1 194445914 4556063..4556893 1 NC_011080.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; periplasmic chaperone 4556893 423368004734 SNSL254_A4669 Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic chaperone YP_002043571.1 4556063 D 423368 CDS YP_002043572.1 194444458 4559897..4560148 1 NC_011080.1 invasin protein 4560148 423368004737 SNSL254_A4672 Salmonella enterica subsp. enterica serovar Newport str. SL254 invasin protein YP_002043572.1 4559897 D 423368 CDS YP_002043573.1 194443676 4560227..4560355 1 NC_011080.1 identified by glimmer; hypothetical protein 4560355 423368004738 SNSL254_A4673 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043573.1 4560227 D 423368 CDS YP_002043574.1 194443162 4560865..4561332 1 NC_011080.1 identified by glimmer; hypothetical protein 4561332 423368004739 SNSL254_A4674 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043574.1 4560865 D 423368 CDS YP_002043575.1 194442863 4561513..4562172 1 NC_011080.1 identified by match to protein family HMM PF01323; thiol:disulfide interchange protein DsbA 4562172 423368004740 SNSL254_A4675 Salmonella enterica subsp. enterica serovar Newport str. SL254 thiol:disulfide interchange protein DsbA YP_002043575.1 4561513 D 423368 CDS YP_002043576.1 194446225 complement(4562556..4562681) 1 NC_011080.1 identified by glimmer; hypothetical protein 4562681 423368004741 SNSL254_A4676 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043576.1 4562556 R 423368 CDS YP_002043577.1 194445711 4562872..4563084 1 NC_011080.1 identified by match to protein family HMM PF04703; hypothetical protein 4563084 423368004742 SNSL254_A4677 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043577.1 4562872 D 423368 CDS YP_002043578.1 194446632 4563360..4563506 1 NC_011080.1 identified by glimmer; hypothetical protein 4563506 423368004743 SNSL254_A4678 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043578.1 4563360 D 423368 CDS YP_002043579.1 194446220 4563532..4564380 1 NC_011080.1 identified by match to protein family HMM PF06977; hypothetical protein 4564380 423368004744 SNSL254_A4679 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043579.1 4563532 D 423368 CDS YP_002043580.1 194445560 complement(4564525..4565277) 1 NC_011080.1 identified by match to protein family HMM PF01569; acid phosphatase 4565277 423368004745 SNSL254_A4680 Salmonella enterica subsp. enterica serovar Newport str. SL254 acid phosphatase YP_002043580.1 4564525 R 423368 CDS YP_002043581.1 194444035 complement(4565320..4565454) 1 NC_011080.1 ail and OmpX Homolog 4565454 423368004746 SNSL254_A4681 Salmonella enterica subsp. enterica serovar Newport str. SL254 ail and OmpX Homolog YP_002043581.1 4565320 R 423368 CDS YP_002043582.1 194443371 complement(4566179..4566754) 1 NC_011080.1 identified by match to protein family HMM PF00440; transcriptional regulator 4566754 423368004748 SNSL254_A4683 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_002043582.1 4566179 R 423368 CDS YP_002043583.1 194442778 complement(4566791..4568494) 1 NC_011080.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 4568494 dipZ 423368004749 dipZ Salmonella enterica subsp. enterica serovar Newport str. SL254 thiol:disulfide interchange protein YP_002043583.1 4566791 R 423368 CDS YP_002043584.1 194442428 complement(4568470..4568817) 1 NC_011080.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA 4568817 cutA 423368004750 cutA Salmonella enterica subsp. enterica serovar Newport str. SL254 divalent-cation tolerance protein CutA YP_002043584.1 4568470 R 423368 CDS YP_002043585.1 194446383 complement(4568938..4570239) 1 NC_011080.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4570239 dcuA 423368004751 dcuA Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic C4-dicarboxylate transporter YP_002043585.1 4568938 R 423368 CDS YP_002043586.1 194444900 complement(4570354..4571790) 1 NC_011080.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4571790 aspA 423368004752 aspA Salmonella enterica subsp. enterica serovar Newport str. SL254 aspartate ammonia-lyase YP_002043586.1 4570354 R 423368 CDS YP_002043587.1 194443493 4572131..4572607 1 NC_011080.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4572607 fxsA 423368004753 fxsA Salmonella enterica subsp. enterica serovar Newport str. SL254 FxsA protein YP_002043587.1 4572131 D 423368 CDS YP_002043588.1 194442613 complement(4572666..4573928) 1 NC_011080.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; hypothetical protein 4573928 423368004754 SNSL254_A4689 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043588.1 4572666 R 423368 CDS YP_002043589.1 194443069 4574183..4574476 1 NC_011080.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4574476 groES 423368004755 groES Salmonella enterica subsp. enterica serovar Newport str. SL254 co-chaperonin GroES YP_002043589.1 4574183 D 423368 CDS YP_002043590.1 194443904 4574520..4576166 1 NC_011080.1 '60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth'; molecular chaperone GroEL 4576166 groEL 423368004756 groEL Salmonella enterica subsp. enterica serovar Newport str. SL254 molecular chaperone GroEL YP_002043590.1 4574520 D 423368 CDS YP_002043591.1 194444398 4576417..4576770 1 NC_011080.1 lipoprotein 4576770 423368004757 SNSL254_A4692 Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoprotein YP_002043591.1 4576417 D 423368 CDS YP_002043592.1 194443996 complement(4576818..4577675) 1 NC_011080.1 hypothetical protein 4577675 423368004758 SNSL254_A4693 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043592.1 4576818 R 423368 CDS YP_002043593.1 194444516 complement(4577957..4578985) 1 NC_011080.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; KamA family protein 4578985 423368004759 SNSL254_A4694 Salmonella enterica subsp. enterica serovar Newport str. SL254 KamA family protein YP_002043593.1 4577957 R 423368 CDS YP_002043594.1 194445275 4579026..4579592 1 NC_011080.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4579592 efp 423368004760 efp Salmonella enterica subsp. enterica serovar Newport str. SL254 elongation factor P YP_002043594.1 4579026 D 423368 CDS YP_002043595.1 194445737 4579611..4579787 1 NC_011080.1 identified by match to protein family HMM PF08085; entericidin A 4579787 423368004761 SNSL254_A4696 Salmonella enterica subsp. enterica serovar Newport str. SL254 entericidin A YP_002043595.1 4579611 D 423368 CDS YP_008083662.1 513538143 complement(4580072..4580659) 1 NC_011080.1 transcriptional regulator 4580659 423368004762 SNSL254_A4697 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_008083662.1 4580072 R 423368 CDS YP_008083663.1 513538144 4580916..4581233 1 NC_011080.1 quaternary ammonium compound-resistance protein SugE 4581233 423368004763 SNSL254_A4699 Salmonella enterica subsp. enterica serovar Newport str. SL254 quaternary ammonium compound-resistance protein SugE YP_008083663.1 4580916 D 423368 CDS YP_002043597.1 194444045 complement(4581250..4581783) 1 NC_011080.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 4581783 423368004764 SNSL254_A4700 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane lipoprotein Blc YP_002043597.1 4581250 R 423368 CDS YP_002043598.1 194444376 complement(4581895..4582254) 1 NC_011080.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4582254 423368004765 SNSL254_A4701 Salmonella enterica subsp. enterica serovar Newport str. SL254 fumarate reductase subunit D YP_002043598.1 4581895 R 423368 CDS YP_002043599.1 194445038 complement(4582265..4582660) 1 NC_011080.1 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase subunit C 4582660 frdC 423368004766 frdC Salmonella enterica subsp. enterica serovar Newport str. SL254 fumarate reductase subunit C YP_002043599.1 4582265 R 423368 CDS YP_002043600.1 194445371 complement(4582671..4583405) 1 NC_011080.1 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase iron-sulfur subunit 4583405 frdB 423368004767 frdB Salmonella enterica subsp. enterica serovar Newport str. SL254 fumarate reductase iron-sulfur subunit YP_002043600.1 4582671 R 423368 CDS YP_002043601.1 194446050 complement(4583398..4585188) 1 NC_011080.1 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase flavoprotein subunit 4585188 frdA 423368004768 frdA Salmonella enterica subsp. enterica serovar Newport str. SL254 fumarate reductase flavoprotein subunit YP_002043601.1 4583398 R 423368 CDS YP_002043602.1 194446410 4585511..4586488 1 NC_011080.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4586488 423368004769 SNSL254_A4705 Salmonella enterica subsp. enterica serovar Newport str. SL254 lysyl-tRNA synthetase YP_002043602.1 4585511 D 423368 CDS YP_002043603.1 194442353 4586714..4588216 1 NC_011080.1 identified by match to protein family HMM PF00324; inner membrane transporter YjeM 4588216 423368004770 SNSL254_A4706 Salmonella enterica subsp. enterica serovar Newport str. SL254 inner membrane transporter YjeM YP_002043603.1 4586714 D 423368 CDS YP_002043604.1 194443922 4588268..4588582 1 NC_011080.1 hypothetical protein 4588582 423368004771 SNSL254_A4707 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043604.1 4588268 D 423368 CDS YP_002043605.1 194444691 complement(4588649..4591975) 1 NC_011080.1 identified by match to protein family HMM PF00924; hypothetical protein 4591975 423368004772 SNSL254_A4708 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043605.1 4588649 R 423368 CDS YP_002043606.1 194444868 complement(4591994..4592962) 1 NC_011080.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4592962 psd 423368004773 psd Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphatidylserine decarboxylase YP_002043606.1 4591994 R 423368 CDS YP_002043607.1 194445370 complement(4593054..4594106) 1 NC_011080.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4594106 rsgA 423368004774 rsgA Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosome-associated GTPase YP_002043607.1 4593054 R 423368 CDS YP_002043608.1 194446159 4594213..4594758 1 NC_011080.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4594758 423368004775 SNSL254_A4711 Salmonella enterica subsp. enterica serovar Newport str. SL254 oligoribonuclease YP_002043608.1 4594213 D 423368 CDS YP_002043609.1 194444606 complement(4594820..4595560) 1 NC_011080.1 identified by match to protein family HMM PF00497; arginine-binding periplasmic protein 2 4595560 423368004776 SNSL254_A4712 Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine-binding periplasmic protein 2 YP_002043609.1 4594820 R 423368 CDS YP_002043610.1 194442339 complement(4596406..4597560) 1 NC_011080.1 identified by match to protein family HMM PF08331; match to protein family HMM TIGR00276; iron-sulfur cluster binding protein 4597560 423368004780 SNSL254_A4717 Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-sulfur cluster binding protein YP_002043610.1 4596406 R 423368 CDS YP_002043611.1 194442841 4597547..4599091 1 NC_011080.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein 4599091 423368004781 SNSL254_A4716 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043611.1 4597547 D 423368 CDS YP_002043612.1 194443602 4599063..4599524 1 NC_011080.1 possibly involved in cell wall synthesis; ATPase 4599524 423368004782 SNSL254_A4718 Salmonella enterica subsp. enterica serovar Newport str. SL254 ATPase YP_002043612.1 4599063 D 423368 CDS YP_002043613.1 194444079 4599541..4600860 1 NC_011080.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-l-alanine amidase II 4600860 423368004783 SNSL254_A4719 Salmonella enterica subsp. enterica serovar Newport str. SL254 N-acetylmuramoyl-l-alanine amidase II YP_002043613.1 4599541 D 423368 CDS YP_002043614.1 194445394 4600870..4602726 1 NC_011080.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4602726 mutL 423368004784 mutL Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA mismatch repair protein YP_002043614.1 4600870 D 423368 CDS YP_002043615.1 194443718 4602719..4603669 1 NC_011080.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4603669 miaA 423368004785 miaA Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA delta(2)-isopentenylpyrophosphate transferase YP_002043615.1 4602719 D 423368 CDS YP_002043616.1 194445156 4603752..4604060 1 NC_011080.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4604060 hfq 423368004786 hfq Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA-binding protein Hfq YP_002043616.1 4603752 D 423368 CDS YP_002043617.1 194445750 4604132..4605412 1 NC_011080.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4605412 hflX 423368004787 hflX Salmonella enterica subsp. enterica serovar Newport str. SL254 GTPase HflX YP_002043617.1 4604132 D 423368 CDS YP_002043618.1 194442767 4605627..4606886 1 NC_011080.1 with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4606886 hflK 423368004788 hflK Salmonella enterica subsp. enterica serovar Newport str. SL254 FtsH protease regulator HflK YP_002043618.1 4605627 D 423368 CDS YP_002043619.1 194443248 4606889..4607893 1 NC_011080.1 with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4607893 hflC 423368004789 hflC Salmonella enterica subsp. enterica serovar Newport str. SL254 FtsH protease regulator HflC YP_002043619.1 4606889 D 423368 CDS YP_002043620.1 194443752 4607972..4608169 1 NC_011080.1 hypothetical protein 4608169 423368004790 SNSL254_A4726 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043620.1 4607972 D 423368 CDS YP_002043621.1 194444239 4608272..4609570 1 NC_011080.1 'catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis'; adenylosuccinate synthetase 4609570 purA 423368004791 purA Salmonella enterica subsp. enterica serovar Newport str. SL254 adenylosuccinate synthetase YP_002043621.1 4608272 D 423368 CDS YP_002043622.2 448967563 4609777..4610202 1 NC_011080.1 negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4610202 nsrR 423368004792 nsrR Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional repressor NsrR YP_002043622.2 4609777 D 423368 CDS YP_002043623.1 194444903 4610240..4612678 1 NC_011080.1 '3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs'; exoribonuclease R 4612678 rnr 423368004793 rnr Salmonella enterica subsp. enterica serovar Newport str. SL254 exoribonuclease R YP_002043623.1 4610240 D 423368 CDS YP_002043624.1 194444737 4612769..4613500 1 NC_011080.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4613500 423368004794 SNSL254_A4730 Salmonella enterica subsp. enterica serovar Newport str. SL254 23S rRNA (guanosine-2'-O-)-methyltransferase YP_002043624.1 4612769 D 423368 CDS YP_002043625.1 194445287 4613633..4614037 1 NC_011080.1 hypothetical protein 4614037 423368004795 SNSL254_A4731 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043625.1 4613633 D 423368 CDS YP_002043626.1 194446754 4614052..4614750 1 NC_011080.1 identified by match to protein family HMM PF04012; PspA/IM30 family protein 4614750 423368004796 SNSL254_A4732 Salmonella enterica subsp. enterica serovar Newport str. SL254 PspA/IM30 family protein YP_002043626.1 4614052 D 423368 CDS YP_008083664.1 513538145 4614750..4615820 1 NC_011080.1 potassium channel protein 4615820 423368004797 SNSL254_A4733 Salmonella enterica subsp. enterica serovar Newport str. SL254 potassium channel protein YP_008083664.1 4614750 D 423368 CDS YP_002043627.1 194445509 4615817..4616476 1 NC_011080.1 hypothetical protein 4616476 423368004798 SNSL254_A4734 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043627.1 4615817 D 423368 CDS YP_002043628.1 194446450 4616494..4616892 1 NC_011080.1 identified by match to protein family HMM PF03994; hypothetical protein 4616892 423368004799 SNSL254_A4735 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043628.1 4616494 D 423368 CDS YP_002043629.1 194444101 4616902..4617540 1 NC_011080.1 identified by match to protein family HMM PF06693; hypothetical protein 4617540 423368004800 SNSL254_A4736 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043629.1 4616902 D 423368 CDS YP_002043630.1 194443569 4617543..4618706 1 NC_011080.1 identified by match to protein family HMM PF03738; glutathionylspermidine synthase 4618706 423368004801 SNSL254_A4737 Salmonella enterica subsp. enterica serovar Newport str. SL254 glutathionylspermidine synthase YP_002043630.1 4617543 D 423368 CDS YP_002043631.1 194442803 4618791..4620413 1 NC_011080.1 catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4620413 423368004802 SNSL254_A4738 Salmonella enterica subsp. enterica serovar Newport str. SL254 isovaleryl CoA dehydrogenase YP_002043631.1 4618791 D 423368 CDS YP_002043632.1 194442337 complement(4620458..4620733) 1 NC_011080.1 identified by match to protein family HMM PF07338; hypothetical protein 4620733 423368004803 SNSL254_A4739 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043632.1 4620458 R 423368 CDS YP_002043633.1 194446164 complement(4620864..4621166) 1 NC_011080.1 'in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility'; biofilm stress and motility protein A 4621166 423368004804 SNSL254_A4740 Salmonella enterica subsp. enterica serovar Newport str. SL254 biofilm stress and motility protein A YP_002043633.1 4620864 R 423368 CDS YP_002043634.1 194444153 4621377..4622126 1 NC_011080.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4622126 423368004805 SNSL254_A4741 Salmonella enterica subsp. enterica serovar Newport str. SL254 esterase YP_002043634.1 4621377 D 423368 CDS YP_002043635.1 194443164 complement(4622123..4622878) 1 NC_011080.1 negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 4622878 423368004806 SNSL254_A4742 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional repressor UlaR YP_002043635.1 4622123 R 423368 CDS YP_002043636.1 194442520 complement(4622983..4624047) 1 NC_011080.1 L-ascorbate 6-phosphate lactonase 4624047 423368004807 SNSL254_A4743 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-ascorbate 6-phosphate lactonase YP_002043636.1 4622983 R 423368 CDS YP_002043637.1 194445478 4624410..4625807 1 NC_011080.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4625807 ulaA 423368004808 ulaA Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system ascorbate-specific transporter subunit IIC YP_002043637.1 4624410 D 423368 CDS YP_002043638.1 194443715 4625823..4626128 1 NC_011080.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4626128 ulaB 423368004809 ulaB Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system L-ascorbate-specific transporter subunit IIB YP_002043638.1 4625823 D 423368 CDS YP_002043639.1 194446193 4626138..4626602 1 NC_011080.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4626602 ulaC 423368004810 ulaC Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system L-ascorbate-specific transporter subunit IIA YP_002043639.1 4626138 D 423368 CDS YP_002043640.1 194446705 4626616..4627266 1 NC_011080.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4627266 ulaD 423368004811 ulaD Salmonella enterica subsp. enterica serovar Newport str. SL254 3-keto-L-gulonate-6-phosphate decarboxylase YP_002043640.1 4626616 D 423368 CDS YP_002043641.1 194443796 4627276..4628130 1 NC_011080.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4628130 ulaE 423368004812 ulaE Salmonella enterica subsp. enterica serovar Newport str. SL254 L-xylulose 5-phosphate 3-epimerase YP_002043641.1 4627276 D 423368 CDS YP_002043642.1 194445673 4628130..4628816 1 NC_011080.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4628816 sgaE 423368004813 sgaE Salmonella enterica subsp. enterica serovar Newport str. SL254 L-ribulose-5-phosphate 4-epimerase YP_002043642.1 4628130 D 423368 CDS YP_002043643.1 194442562 complement(4628945..4629220) 1 NC_011080.1 identified by match to protein family HMM PF07338; hypothetical protein 4629220 423368004814 SNSL254_A4750 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043643.1 4628945 R 423368 CDS YP_002043644.1 194443034 4629691..4630086 1 NC_011080.1 'binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21'; 30S ribosomal protein S6 4630086 rpsF 423368004815 rpsF Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S6 YP_002043644.1 4629691 D 423368 CDS YP_002043645.1 194442830 4630093..4630407 1 NC_011080.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4630407 priB 423368004816 priB Salmonella enterica subsp. enterica serovar Newport str. SL254 primosomal replication protein N YP_002043645.1 4630093 D 423368 CDS YP_002043646.1 194446807 4630412..4630639 1 NC_011080.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4630639 rpsR 423368004817 rpsR Salmonella enterica subsp. enterica serovar Newport str. SL254 30S ribosomal protein S18 YP_002043646.1 4630412 D 423368 CDS YP_002043647.1 194444181 4630681..4631130 1 NC_011080.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4631130 rplI 423368004818 rplI Salmonella enterica subsp. enterica serovar Newport str. SL254 50S ribosomal protein L9 YP_002043647.1 4630681 D 423368 CDS YP_002043648.1 194443513 4631278..4632204 1 NC_011080.1 identified by match to protein family HMM PF00892; hypothetical protein 4632204 423368004819 SNSL254_A4755 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043648.1 4631278 D 423368 CDS YP_002043649.1 194445543 complement(4632254..4632889) 1 NC_011080.1 identified by match to protein family HMM PF04225; match to protein family HMM PF08525; opacity-associated protein A 4632889 423368004820 SNSL254_A4756 Salmonella enterica subsp. enterica serovar Newport str. SL254 opacity-associated protein A YP_002043649.1 4632254 R 423368 CDS YP_002043650.1 194445028 4633109..4633729 1 NC_011080.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4633729 423368004821 SNSL254_A4757 Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidyl-prolyl cis-trans isomerase YP_002043650.1 4633109 D 423368 CDS YP_002043651.1 194446495 4633741..4633866 1 NC_011080.1 identified by glimmer; hypothetical protein 4633866 423368004822 SNSL254_A4758 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043651.1 4633741 D 423368 CDS YP_002043652.1 194446063 4634024..4635427 1 NC_011080.1 'involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine'; D-alanine/D-serine/glycine permease 4635427 423368004823 SNSL254_A4759 Salmonella enterica subsp. enterica serovar Newport str. SL254 D-alanine/D-serine/glycine permease YP_002043652.1 4634024 D 423368 CDS YP_002043653.1 194445558 4635765..4636904 1 NC_011080.1 hypothetical protein 4636904 423368004824 SNSL254_A4760 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043653.1 4635765 D 423368 CDS YP_002043654.1 194445058 4636919..4638307 1 NC_011080.1 hypothetical protein 4638307 423368004825 SNSL254_A4761 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043654.1 4636919 D 423368 CDS YP_002043655.1 194444231 complement(4638374..4639036) 1 NC_011080.1 Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein 4639036 423368004826 SNSL254_A4762 Salmonella enterica subsp. enterica serovar Newport str. SL254 iron-sulfur cluster repair di-iron protein YP_002043655.1 4638374 R 423368 CDS YP_002043656.1 194443657 complement(4639139..4640104) 1 NC_011080.1 identified by match to protein family HMM PF00892; hypothetical protein 4640104 423368004827 SNSL254_A4763 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043656.1 4639139 R 423368 CDS YP_002043657.1 194444581 complement(4640185..4641033) 1 NC_011080.1 identified by match to protein family HMM PF01073; match to protein family HMM PF02254; match to protein family HMM PF05368; match to protein family HMM PF07993; hypothetical protein 4641033 423368004828 SNSL254_A4764 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043657.1 4640185 R 423368 CDS YP_008083665.1 513538146 4641121..4641507 1 NC_011080.1 transcriptional regulator 4641507 423368004829 SNSL254_A4765 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional regulator YP_008083665.1 4641121 D 423368 CDS YP_002043658.1 194446288 complement(4641565..4643508) 1 NC_011080.1 'periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate'; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 4643508 cpdB 423368004830 cpdB Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein YP_002043658.1 4641565 R 423368 CDS YP_002043659.1 194445665 complement(4643521..4643742) 1 NC_011080.1 identified by glimmer; hypothetical protein 4643742 423368004831 SNSL254_A4767 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043659.1 4643521 R 423368 CDS YP_002043660.1 194442618 4643776..4644516 1 NC_011080.1 'catalyzes the formation of AMP from adenosine-3',5'-bisphosphate'; adenosine-3'(2'),5'-bisphosphate nucleotidase 4644516 cysQ 423368004832 cysQ Salmonella enterica subsp. enterica serovar Newport str. SL254 adenosine-3'(2'),5'-bisphosphate nucleotidase YP_002043660.1 4643776 D 423368 CDS YP_002043661.1 194443224 complement(4644506..4645063) 1 NC_011080.1 identified by match to protein family HMM PF09695; match to protein family HMM TIGR01626; hypothetical protein 4645063 423368004833 SNSL254_A4769 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043661.1 4644506 R 423368 CDS YP_002043662.1 194442888 4645390..4645596 1 NC_011080.1 identified by match to protein family HMM PF06526; hypothetical protein 4645596 423368004834 SNSL254_A4770 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043662.1 4645390 D 423368 CDS YP_002043663.1 194442282 complement(4645681..4647024) 1 NC_011080.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; transporter 4647024 423368004835 SNSL254_A4771 Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_002043663.1 4645681 R 423368 CDS YP_002043664.1 194443446 complement(4647207..4647845) 1 NC_011080.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 4647845 msrA 423368004836 msrA Salmonella enterica subsp. enterica serovar Newport str. SL254 methionine sulfoxide reductase A YP_002043664.1 4647207 R 423368 CDS YP_002043666.1 194442430 4648058..4649791 1 NC_011080.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; outer membrane protein OMP85 family 4649791 423368004837 SNSL254_A4774 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane protein OMP85 family YP_002043666.1 4648058 D 423368 CDS YP_002043667.1 194443970 4649788..4653567 1 NC_011080.1 identified by match to protein family HMM PF04357; hypothetical protein 4653567 423368004838 SNSL254_A4775 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043667.1 4649788 D 423368 CDS YP_002043668.1 194443412 4653570..4653914 1 NC_011080.1 identified by match to protein family HMM PF06094; hypothetical protein 4653914 423368004839 SNSL254_A4776 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043668.1 4653570 D 423368 CDS YP_002043669.1 194445528 complement(4653968..4655176) 1 NC_011080.1 identified by match to protein family HMM PF07690; sugar transporter 4655176 423368004840 SNSL254_A4777 Salmonella enterica subsp. enterica serovar Newport str. SL254 sugar transporter YP_002043669.1 4653968 R 423368 CDS YP_002043670.1 194445138 complement(4655173..4656336) 1 NC_011080.1 identified by match to protein family HMM PF01979; metallo-dependent hydrolase 4656336 423368004841 SNSL254_A4778 Salmonella enterica subsp. enterica serovar Newport str. SL254 metallo-dependent hydrolase YP_002043670.1 4655173 R 423368 CDS YP_002043671.1 194446559 complement(4656746..4657276) 1 NC_011080.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4657276 ppa 423368004842 ppa Salmonella enterica subsp. enterica serovar Newport str. SL254 inorganic pyrophosphatase YP_002043671.1 4656746 R 423368 CDS YP_002043672.1 194446038 complement(4657503..4658501) 1 NC_011080.1 'catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate'; fructose-1,6-bisphosphatase 4658501 fbp 423368004843 fbp Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose-1,6-bisphosphatase YP_002043672.1 4657503 R 423368 CDS YP_002043673.1 194445921 4658676..4660049 1 NC_011080.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4660049 mpl 423368004844 mpl Salmonella enterica subsp. enterica serovar Newport str. SL254 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_002043673.1 4658676 D 423368 CDS YP_002043674.1 194442777 complement(4660156..4660707) 1 NC_011080.1 identified by match to protein family HMM PF04751; hypothetical protein 4660707 yjgA 423368004845 yjgA Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043674.1 4660156 R 423368 CDS YP_002043675.1 194446471 4660815..4662155 1 NC_011080.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4662155 pmbA 423368004846 pmbA Salmonella enterica subsp. enterica serovar Newport str. SL254 peptidase PmbA YP_002043675.1 4660815 D 423368 CDS YP_002043676.1 194445837 4662254..4662640 1 NC_011080.1 identified by match to protein family HMM PF07361; soluble cytochrome b562 4662640 423368004847 SNSL254_A4784 Salmonella enterica subsp. enterica serovar Newport str. SL254 soluble cytochrome b562 YP_002043676.1 4662254 D 423368 CDS YP_002043677.1 194442614 4662644..4662799 1 NC_011080.1 hypothetical protein 4662799 423368004848 SNSL254_A4785 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043677.1 4662644 D 423368 CDS YP_002043678.1 194446567 4662937..4663266 1 NC_011080.1 identified by match to protein family HMM PF00874; match to protein family HMM TIGR03582; PRD domain-containing protein 4663266 423368004849 SNSL254_A4786 Salmonella enterica subsp. enterica serovar Newport str. SL254 PRD domain-containing protein YP_002043678.1 4662937 D 423368 CDS YP_002043679.1 194443390 4663277..4663639 1 NC_011080.1 identified by match to protein family HMM TIGR03577; hypothetical protein 4663639 423368004850 SNSL254_A4787 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043679.1 4663277 D 423368 CDS YP_002043680.1 194443218 4663639..4663941 1 NC_011080.1 identified by match to protein family HMM TIGR03578; hypothetical protein 4663941 423368004851 SNSL254_A4788 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043680.1 4663639 D 423368 CDS YP_002043681.1 194444698 4663964..4664740 1 NC_011080.1 identified by match to protein family HMM TIGR03580; hypothetical protein 4664740 423368004852 SNSL254_A4789 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043681.1 4663964 D 423368 CDS YP_002043682.1 194443925 4664752..4665396 1 NC_011080.1 identified by match to protein family HMM TIGR03579; hypothetical protein 4665396 423368004853 SNSL254_A4790 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043682.1 4664752 D 423368 CDS YP_002043683.1 194445446 4665455..4666588 1 NC_011080.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4666588 423368004854 SNSL254_A4791 Salmonella enterica subsp. enterica serovar Newport str. SL254 dihydroorotase YP_002043683.1 4665455 D 423368 CDS YP_002043684.1 194446149 4666572..4667690 1 NC_011080.1 identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437; hypothetical protein 4667690 423368004855 SNSL254_A4792 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043684.1 4666572 D 423368 CDS YP_002043685.1 194443905 4667687..4668427 1 NC_011080.1 identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581; hypothetical protein 4668427 423368004856 SNSL254_A4793 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043685.1 4667687 D 423368 CDS YP_002043686.1 194445445 4668444..4670357 1 NC_011080.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; transcriptional antiterminator BglG 4670357 423368004857 SNSL254_A4794 Salmonella enterica subsp. enterica serovar Newport str. SL254 transcriptional antiterminator BglG YP_002043686.1 4668444 D 423368 CDS YP_002043687.1 194444894 4670435..4670677 1 NC_011080.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4670677 423368004858 SNSL254_A4795 Salmonella enterica subsp. enterica serovar Newport str. SL254 bifunctional antitoxin/transcriptional repressor RelB YP_002043687.1 4670435 D 423368 CDS YP_002043688.1 194446412 4670667..4670951 1 NC_011080.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; stability protein StbE 4670951 423368004859 SNSL254_A4796 Salmonella enterica subsp. enterica serovar Newport str. SL254 stability protein StbE YP_002043688.1 4670667 D 423368 CDS YP_002043689.1 194442932 complement(4670955..4671419) 1 NC_011080.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 4671419 nrdG 423368004860 nrdG Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic ribonucleotide reductase-activating protein YP_002043689.1 4670955 R 423368 CDS YP_002043690.1 194442441 complement(4671636..4673774) 1 NC_011080.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 4673774 nrdD 423368004861 nrdD Salmonella enterica subsp. enterica serovar Newport str. SL254 anaerobic ribonucleoside triphosphate reductase YP_002043690.1 4671636 R 423368 CDS YP_002043691.1 194443973 4673979..4674149 1 NC_011080.1 hypothetical protein 4674149 423368004862 SNSL254_A4799 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043691.1 4673979 D 423368 CDS YP_002043692.1 194443467 complement(4674183..4675835) 1 NC_011080.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; trehalose-6-phosphate hydrolase 4675835 treC 423368004863 treC Salmonella enterica subsp. enterica serovar Newport str. SL254 trehalose-6-phosphate hydrolase YP_002043692.1 4674183 R 423368 CDS YP_002043693.1 194444469 complement(4675885..4677303) 1 NC_011080.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunit IIBC 4677303 treB 423368004864 treB Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system trehalose(maltose)-specific transporter subunit IIBC YP_002043693.1 4675885 R 423368 CDS YP_002043694.1 194443516 complement(4677441..4678388) 1 NC_011080.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 4678388 treR 423368004865 treR Salmonella enterica subsp. enterica serovar Newport str. SL254 trehalose repressor YP_002043694.1 4677441 R 423368 CDS YP_002043696.1 194445039 4678724..4681480 1 NC_011080.1 P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4681480 mgtA 423368004866 mgtA Salmonella enterica subsp. enterica serovar Newport str. SL254 magnesium-transporting ATPase MgtA YP_002043696.1 4678724 D 423368 CDS YP_002043697.1 194444017 complement(4681569..4681955) 1 NC_011080.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 4681955 423368004867 SNSL254_A4805 Salmonella enterica subsp. enterica serovar Newport str. SL254 endoribonuclease L-PSP YP_002043697.1 4681569 R 423368 CDS YP_002043698.1 194443336 complement(4682032..4682493) 1 NC_011080.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 4682493 pyrI 423368004868 pyrI Salmonella enterica subsp. enterica serovar Newport str. SL254 aspartate carbamoyltransferase YP_002043698.1 4682032 R 423368 CDS YP_002043699.1 194443405 complement(4682506..4683441) 1 NC_011080.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 4683441 pyrB 423368004869 pyrB Salmonella enterica subsp. enterica serovar Newport str. SL254 aspartate carbamoyltransferase YP_002043699.1 4682506 R 423368 CDS YP_002043700.1 194443022 complement(4683669..4684157) 1 NC_011080.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor ArgR 4684157 423368004870 SNSL254_A4808 Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine repressor ArgR YP_002043700.1 4683669 R 423368 CDS YP_002043701.1 194442391 complement(4684154..4684270) 1 NC_011080.1 identified by glimmer; hypothetical protein 4684270 423368004871 SNSL254_A4809 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043701.1 4684154 R 423368 CDS YP_002043702.1 194445961 complement(4684344..4685747) 1 NC_011080.1 identified by match to protein family HMM PF03606; C4-dicarboxylate anaerobic carrier 4685747 423368004872 SNSL254_A4810 Salmonella enterica subsp. enterica serovar Newport str. SL254 C4-dicarboxylate anaerobic carrier YP_002043702.1 4684344 R 423368 CDS YP_002043703.1 194446010 complement(4685803..4686807) 1 NC_011080.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 4686807 argF 423368004873 argF Salmonella enterica subsp. enterica serovar Newport str. SL254 ornithine carbamoyltransferase YP_002043703.1 4685803 R 423368 CDS YP_002043704.1 194446704 complement(4686807..4686944) 1 NC_011080.1 hypothetical protein 4686944 423368004874 SNSL254_A4812 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043704.1 4686807 R 423368 CDS YP_002043705.1 194443362 complement(4686919..4687851) 1 NC_011080.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4687851 arcC 423368004875 arcC Salmonella enterica subsp. enterica serovar Newport str. SL254 carbamate kinase YP_002043705.1 4686919 R 423368 CDS YP_002043706.1 194444027 complement(4687862..4689082) 1 NC_011080.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 4689082 arcA 423368004876 arcA Salmonella enterica subsp. enterica serovar Newport str. SL254 arginine deiminase YP_002043706.1 4687862 R 423368 CDS YP_002043707.1 194442374 4689183..4689374 1 NC_011080.1 hypothetical protein 4689374 423368004877 SNSL254_A4815 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043707.1 4689183 D 423368 CDS YP_002043708.1 194443005 4689758..4690210 1 NC_011080.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 4690210 423368004878 SNSL254_A4816 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043708.1 4689758 D 423368 CDS YP_002043709.1 194443068 complement(4690284..4691288) 1 NC_011080.1 'catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.'; ornithine carbamoyltransferase subunit I 4691288 argF 423368004879 argF Salmonella enterica subsp. enterica serovar Newport str. SL254 ornithine carbamoyltransferase subunit I YP_002043709.1 4690284 R 423368 CDS YP_002043710.1 194446187 4691454..4691870 1 NC_011080.1 identified by match to protein family HMM PF06877; hypothetical protein 4691870 423368004880 SNSL254_A4818 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043710.1 4691454 D 423368 CDS YP_002043711.1 194446427 4691929..4692693 1 NC_011080.1 identified by match to protein family HMM PF06175; tRNA-(ms[2]io[6]A)-hydroxylase 4692693 423368004881 SNSL254_A4819 Salmonella enterica subsp. enterica serovar Newport str. SL254 tRNA-(ms[2]io[6]A)-hydroxylase YP_002043711.1 4691929 D 423368 CDS YP_002043712.1 194445971 complement(4692927..4693415) 1 NC_011080.1 hypothetical protein 4693415 423368004882 SNSL254_A4821 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043712.1 4692927 R 423368 CDS YP_002043713.1 194446101 complement(4693522..4694025) 1 NC_011080.1 identified by match to protein family HMM PF00583; GNAT family acetyltransferase 4694025 423368004883 SNSL254_A4822 Salmonella enterica subsp. enterica serovar Newport str. SL254 GNAT family acetyltransferase YP_002043713.1 4693522 R 423368 CDS YP_002043714.1 194442394 4694220..4695407 1 NC_011080.1 identified by match to protein family HMM PF05987; hypothetical protein 4695407 423368004884 SNSL254_A4823 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043714.1 4694220 D 423368 CDS YP_002043715.1 194444143 complement(4695549..4698404) 1 NC_011080.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4698404 valS 423368004885 valS Salmonella enterica subsp. enterica serovar Newport str. SL254 valyl-tRNA synthetase YP_002043715.1 4695549 R 423368 CDS YP_002043716.1 194445428 complement(4698404..4698847) 1 NC_011080.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4698847 holC 423368004886 holC Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase III subunit chi YP_002043716.1 4698404 R 423368 CDS YP_002043717.1 194444911 complement(4698984..4700495) 1 NC_011080.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4700495 pepA 423368004887 pepA Salmonella enterica subsp. enterica serovar Newport str. SL254 leucyl aminopeptidase YP_002043717.1 4698984 R 423368 CDS YP_002043718.1 194445077 4700890..4701990 1 NC_011080.1 identified by match to protein family HMM PF03739; permease 4701990 423368004888 SNSL254_A4827 Salmonella enterica subsp. enterica serovar Newport str. SL254 permease YP_002043718.1 4700890 D 423368 CDS YP_002043719.1 194446562 4701990..4703072 1 NC_011080.1 identified by match to protein family HMM PF03739; hypothetical protein 4703072 423368004889 SNSL254_A4828 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043719.1 4701990 D 423368 CDS YP_002043720.1 194445779 complement(4703266..4704264) 1 NC_011080.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator IdnR 4704264 423368004890 SNSL254_A4829 Salmonella enterica subsp. enterica serovar Newport str. SL254 HTH-type transcriptional regulator IdnR YP_002043720.1 4703266 R 423368 CDS YP_002043721.1 194443242 complement(4704328..4705719) 1 NC_011080.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; gluconate:H+ symporter (hypothetical protein) family transporter 4705719 423368004891 SNSL254_A4830 Salmonella enterica subsp. enterica serovar Newport str. SL254 gluconate:H+ symporter (hypothetical protein) family transporter YP_002043721.1 4704328 R 423368 CDS YP_002043722.1 194446285 complement(4705709..4706473) 1 NC_011080.1 'Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate'; gluconate 5-dehydrogenase 4706473 423368004892 SNSL254_A4831 Salmonella enterica subsp. enterica serovar Newport str. SL254 gluconate 5-dehydrogenase YP_002043722.1 4705709 R 423368 CDS YP_002043723.1 194443735 complement(4706498..4707529) 1 NC_011080.1 NAD-binding; L-idonate 5-dehydrogenase 4707529 423368004893 SNSL254_A4832 Salmonella enterica subsp. enterica serovar Newport str. SL254 L-idonate 5-dehydrogenase YP_002043723.1 4706498 R 423368 CDS YP_002043724.1 194444256 4707746..4708276 1 NC_011080.1 identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313; D-gluconate kinase 4708276 idnK 423368004894 idnK Salmonella enterica subsp. enterica serovar Newport str. SL254 D-gluconate kinase YP_002043724.1 4707746 D 423368 CDS YP_002043725.1 194445237 complement(4708304..4709323) 1 NC_011080.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; hypothetical protein 4709323 423368004895 SNSL254_A4834 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043725.1 4708304 R 423368 CDS YP_002043726.1 194444728 4709793..4711058 1 NC_011080.1 identified by match to protein family HMM PF00589; integrase 4711058 423368004897 SNSL254_A4836 Salmonella enterica subsp. enterica serovar Newport str. SL254 integrase YP_002043726.1 4709793 D 423368 CDS YP_002043727.1 194446250 complement(4711108..4713657) 1 NC_011080.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; dead/deah box helicase domain-containing protein 4713657 423368004898 SNSL254_A4837 Salmonella enterica subsp. enterica serovar Newport str. SL254 dead/deah box helicase domain-containing protein YP_002043727.1 4711108 R 423368 CDS YP_002043728.1 194445729 complement(4713641..4714678) 1 NC_011080.1 hypothetical protein 4714678 423368004899 SNSL254_A4838 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043728.1 4713641 R 423368 CDS YP_002043729.1 194443214 complement(4715109..4715231) 1 NC_011080.1 Ogr family transcription activator 4715231 423368004900 SNSL254_A4839 Salmonella enterica subsp. enterica serovar Newport str. SL254 Ogr family transcription activator YP_002043729.1 4715109 R 423368 CDS YP_002043730.1 194442703 complement(4715383..4715937) 1 NC_011080.1 encoded in CP-933I; identified by match to protein family HMM PF07455; polarity suppression protein 4715937 423368004901 SNSL254_A4840 Salmonella enterica subsp. enterica serovar Newport str. SL254 polarity suppression protein YP_002043730.1 4715383 R 423368 CDS YP_002043731.1 194444227 complement(4715934..4716686) 1 NC_011080.1 capsid morphogenesis protein encoded in CP-933I 4716686 423368004902 SNSL254_A4841 Salmonella enterica subsp. enterica serovar Newport str. SL254 capsid morphogenesis protein encoded in CP-933I YP_002043731.1 4715934 R 423368 CDS YP_002043732.1 194442672 4717599..4717859 1 NC_011080.1 identified by match to protein family HMM PF05930; phage transcriptional regulator, AlpA 4717859 423368004903 SNSL254_A4842 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage transcriptional regulator, AlpA YP_002043732.1 4717599 D 423368 CDS YP_002043733.1 194442898 complement(4717908..4718033) 1 NC_011080.1 identified by glimmer; hypothetical protein 4718033 423368004904 SNSL254_A4843 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043733.1 4717908 R 423368 CDS YP_002043734.1 194444561 4718213..4718404 1 NC_011080.1 phage immunity repressor protein 4718404 423368004905 SNSL254_A4844 Salmonella enterica subsp. enterica serovar Newport str. SL254 phage immunity repressor protein YP_002043734.1 4718213 D 423368 CDS YP_002043735.1 194445210 4718404..4718625 1 NC_011080.1 hypothetical protein 4718625 423368004906 SNSL254_A4845 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043735.1 4718404 D 423368 CDS YP_002043736.1 194443823 4718625..4718948 1 NC_011080.1 hypothetical protein 4718948 423368004907 SNSL254_A4846 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043736.1 4718625 D 423368 CDS YP_002043737.1 194444462 4718963..4721293 1 NC_011080.1 identified by match to protein family HMM PF03288; match to protein family HMM PF08273; match to protein family HMM PF08706; match to protein family HMM TIGR01613; bacteriophage P4 DNA primase 4721293 423368004908 SNSL254_A4847 Salmonella enterica subsp. enterica serovar Newport str. SL254 bacteriophage P4 DNA primase YP_002043737.1 4718963 D 423368 CDS YP_002043738.1 194443044 complement(4723238..4723954) 1 NC_011080.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 4723954 423368004910 SNSL254_A4850 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043738.1 4723238 R 423368 CDS YP_002043739.1 194445667 4724052..4724183 1 NC_011080.1 identified by glimmer; hypothetical protein 4724183 423368004911 SNSL254_A4851 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043739.1 4724052 D 423368 CDS YP_002043740.1 194443138 complement(4724514..4726139) 1 NC_011080.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; SAM-dependent methyltransferase 4726139 423368004912 SNSL254_A4852 Salmonella enterica subsp. enterica serovar Newport str. SL254 SAM-dependent methyltransferase YP_002043740.1 4724514 R 423368 CDS YP_002043741.1 194443645 complement(4726150..4726407) 1 NC_011080.1 hypothetical protein 4726407 423368004913 SNSL254_A4853 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043741.1 4726150 R 423368 CDS YP_002043743.1 194443899 4726894..4727502 1 NC_011080.1 identified by match to protein family HMM PF06353; hypothetical protein 4727502 423368004914 SNSL254_A4855 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043743.1 4726894 D 423368 CDS YP_002043744.1 194443140 4727854..4728765 1 NC_011080.1 hypothetical protein 4728765 423368004915 SNSL254_A4856 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043744.1 4727854 D 423368 CDS YP_002043747.1 194445117 4729063..4729431 1 NC_011080.1 identified by match to protein family HMM PF03625; hypothetical protein 4729431 423368004916 SNSL254_A4859 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043747.1 4729063 D 423368 CDS YP_002043748.1 194445935 complement(4729428..4730102) 1 NC_011080.1 identified by match to protein family HMM PF01738; dienelactone hydrolase 4730102 423368004917 SNSL254_A4860 Salmonella enterica subsp. enterica serovar Newport str. SL254 dienelactone hydrolase YP_002043748.1 4729428 R 423368 CDS YP_002043749.1 194444601 4730452..4731225 1 NC_011080.1 regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4731225 423368004918 SNSL254_A4861 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional repressor UxuR YP_002043749.1 4730452 D 423368 CDS YP_002043750.1 194445132 complement(4731226..4732239) 1 NC_011080.1 'catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; tryptophanyl-tRNA synthetase II 4732239 trpS 423368004919 trpS Salmonella enterica subsp. enterica serovar Newport str. SL254 tryptophanyl-tRNA synthetase II YP_002043750.1 4731226 R 423368 CDS YP_002043751.2 448967564 4732957..4733487 1 NC_011080.1 identified by match to protein family HMM PF05638; hypothetical protein 4733487 423368004920 SNSL254_A4863 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043751.2 4732957 D 423368 CDS YP_002043752.1 194444031 4733521..4733643 1 NC_011080.1 identified by glimmer; hypothetical protein 4733643 423368004921 SNSL254_A4864 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043752.1 4733521 D 423368 CDS YP_002043753.1 194442279 4733726..4734460 1 NC_011080.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; aspartate racemase 4734460 423368004922 SNSL254_A4865 Salmonella enterica subsp. enterica serovar Newport str. SL254 aspartate racemase YP_002043753.1 4733726 D 423368 CDS YP_002043754.1 194445555 complement(4734466..4735374) 1 NC_011080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 4735374 423368004923 SNSL254_A4866 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional regulator YP_002043754.1 4734466 R 423368 CDS YP_002043755.1 194443837 complement(4735493..4736665) 1 NC_011080.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975; isoaspartyl dipeptidase 4736665 iadA 423368004924 iadA Salmonella enterica subsp. enterica serovar Newport str. SL254 isoaspartyl dipeptidase YP_002043755.1 4735493 R 423368 CDS YP_002043756.1 194446622 complement(4736678..4737139) 1 NC_011080.1 identified by match to protein family HMM PF07670; hypothetical protein 4737139 423368004925 SNSL254_A4868 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043756.1 4736678 R 423368 CDS YP_002043757.1 194444815 complement(4737136..4737807) 1 NC_011080.1 identified by match to protein family HMM PF07670; transporter gate domain-containing protein 4737807 423368004926 SNSL254_A4869 Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter gate domain-containing protein YP_002043757.1 4737136 R 423368 CDS YP_002043758.1 194442452 complement(4738678..4739862) 1 NC_011080.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690; major facilitator family protein 4739862 423368004927 SNSL254_A4870 Salmonella enterica subsp. enterica serovar Newport str. SL254 major facilitator family protein YP_002043758.1 4738678 R 423368 CDS YP_002043759.1 194442966 complement(4740082..4741353) 1 NC_011080.1 identified by match to protein family HMM PF04286; hypothetical protein 4741353 423368004928 SNSL254_A4871 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043759.1 4740082 R 423368 CDS YP_002043760.1 194442469 complement(4741440..4742681) 1 NC_011080.1 identified by match to protein family HMM PF07690; multidrug resistance protein MdtM 4742681 423368004929 SNSL254_A4872 Salmonella enterica subsp. enterica serovar Newport str. SL254 multidrug resistance protein MdtM YP_002043760.1 4741440 R 423368 CDS YP_002043761.1 194442293 complement(4742738..4742881) 1 NC_011080.1 identified by glimmer; hypothetical protein 4742881 423368004930 SNSL254_A4873 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043761.1 4742738 R 423368 CDS YP_002043762.1 194444525 4743160..4744113 1 NC_011080.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 4744113 423368004931 SNSL254_A4874 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043762.1 4743160 D 423368 CDS YP_002043764.1 194446590 4744294..4745664 1 NC_011080.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 4745664 423368004932 SNSL254_A4876 Salmonella enterica subsp. enterica serovar Newport str. SL254 aldehyde dehydrogenase YP_002043764.1 4744294 D 423368 CDS YP_002043765.1 194445938 complement(4746110..4747030) 1 NC_011080.1 transporter 4747030 423368004933 SNSL254_A4877 Salmonella enterica subsp. enterica serovar Newport str. SL254 transporter YP_002043765.1 4746110 R 423368 CDS YP_002043766.1 194443238 4747166..4749019 1 NC_011080.1 identified by match to protein family HMM PF03235; hypothetical protein 4749019 423368004934 SNSL254_A4878 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043766.1 4747166 D 423368 CDS YP_002043767.1 194442629 complement(4749064..4749384) 1 NC_011080.1 involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE 4749384 423368004935 SNSL254_A4879 Salmonella enterica subsp. enterica serovar Newport str. SL254 endoribonuclease SymE YP_002043767.1 4749064 R 423368 CDS YP_002043768.1 194442247 complement(4749600..4751315) 1 NC_011080.1 identified by match to protein family HMM PF01420; type I restriction-modification system subunit S 4751315 423368004936 SNSL254_A4880 Salmonella enterica subsp. enterica serovar Newport str. SL254 type I restriction-modification system subunit S YP_002043768.1 4749600 R 423368 CDS YP_002043769.1 194443867 complement(4751315..4752784) 1 NC_011080.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02384; type I restriction-modification system M subunit 4752784 423368004937 SNSL254_A4881 Salmonella enterica subsp. enterica serovar Newport str. SL254 type I restriction-modification system M subunit YP_002043769.1 4751315 R 423368 CDS YP_002043770.1 194443594 complement(4752855..4755284) 1 NC_011080.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463; type I restriction enzyme EcoEI R protein 4755284 423368004938 SNSL254_A4882 Salmonella enterica subsp. enterica serovar Newport str. SL254 type I restriction enzyme EcoEI R protein YP_002043770.1 4752855 R 423368 CDS YP_002043771.1 194442659 4755426..4756394 1 NC_011080.1 hypothetical protein 4756394 423368004939 SNSL254_A4883 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043771.1 4755426 D 423368 CDS YP_002043772.1 194446456 complement(4756510..4757466) 1 NC_011080.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; GTP-binding protein YjiA 4757466 423368004940 SNSL254_A4884 Salmonella enterica subsp. enterica serovar Newport str. SL254 GTP-binding protein YjiA YP_002043772.1 4756510 R 423368 CDS YP_002043773.1 194445659 complement(4757477..4757680) 1 NC_011080.1 identified by match to protein family HMM PF04328; hypothetical protein 4757680 423368004941 SNSL254_A4885 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043773.1 4757477 R 423368 CDS YP_002043774.1 194444700 complement(4757775..4759925) 1 NC_011080.1 identified by match to protein family HMM PF02554; carbon starvation family protein 4759925 423368004942 SNSL254_A4886 Salmonella enterica subsp. enterica serovar Newport str. SL254 carbon starvation family protein YP_002043774.1 4757775 R 423368 CDS YP_002043775.1 194443919 4760292..4761953 1 NC_011080.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 4761953 423368004943 SNSL254_A4887 Salmonella enterica subsp. enterica serovar Newport str. SL254 methyl-accepting chemotaxis protein I YP_002043775.1 4760292 D 423368 CDS YP_002043776.1 194444276 complement(4762066..4762215) 1 NC_011080.1 hypothetical protein 4762215 423368004944 SNSL254_A4888 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043776.1 4762066 R 423368 CDS YP_002043777.1 194443761 4762277..4765042 1 NC_011080.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; sigma-54 dependent DNA-binding response regulator 4765042 423368004945 SNSL254_A4889 Salmonella enterica subsp. enterica serovar Newport str. SL254 sigma-54 dependent DNA-binding response regulator YP_002043777.1 4762277 D 423368 CDS YP_002043778.1 194442733 4765144..4765566 1 NC_011080.1 identified by match to protein family HMM PF03610; PTS system fructose subfamily transporter subunit IIA 4765566 423368004946 SNSL254_A4890 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system fructose subfamily transporter subunit IIA YP_002043778.1 4765144 D 423368 CDS YP_002043779.1 194446598 4765581..4766042 1 NC_011080.1 identified by match to protein family HMM PF03830; PTS system transporter subunit IIB 4766042 423368004947 SNSL254_A4891 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system transporter subunit IIB YP_002043779.1 4765581 D 423368 CDS YP_002043780.1 194445782 4766068..4766847 1 NC_011080.1 identified by match to protein family HMM PF03609; PTS system transporter subunit IIC 4766847 423368004948 SNSL254_A4892 Salmonella enterica subsp. enterica serovar Newport str. SL254 PTS system transporter subunit IIC YP_002043780.1 4766068 D 423368 CDS YP_002043781.1 194444555 4766825..4767673 1 NC_011080.1 identified by match to protein family HMM PF03613; fructose permease iid component 4767673 423368004949 SNSL254_A4893 Salmonella enterica subsp. enterica serovar Newport str. SL254 fructose permease iid component YP_002043781.1 4766825 D 423368 CDS YP_002043782.1 194443402 4767686..4768747 1 NC_011080.1 identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase 4768747 423368004950 SNSL254_A4894 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucosamine--fructose-6-phosphate aminotransferase YP_002043782.1 4767686 D 423368 CDS YP_002043783.1 194444026 4768765..4769775 1 NC_011080.1 identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase 4769775 423368004951 SNSL254_A4895 Salmonella enterica subsp. enterica serovar Newport str. SL254 glucosamine--fructose-6-phosphate aminotransferase YP_002043783.1 4768765 D 423368 CDS YP_002043784.1 194442398 complement(4769908..4772199) 1 NC_011080.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 4772199 423368004952 SNSL254_A4896 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglycerol transferase I YP_002043784.1 4769908 R 423368 CDS YP_002043785.1 194443028 complement(4772482..4772943) 1 NC_011080.1 hypothetical protein 4772943 423368004953 SNSL254_A4897 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043785.1 4772482 R 423368 CDS YP_002043786.1 194446522 complement(4773001..4773738) 1 NC_011080.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 4773738 423368004954 SNSL254_A4898 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA replication protein DnaC YP_002043786.1 4773001 R 423368 CDS YP_002043787.1 194444841 complement(4773741..4774280) 1 NC_011080.1 'This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N''; primosomal protein DnaI 4774280 423368004955 SNSL254_A4899 Salmonella enterica subsp. enterica serovar Newport str. SL254 primosomal protein DnaI YP_002043787.1 4773741 R 423368 CDS YP_002043788.1 194445459 complement(4774373..4774846) 1 NC_011080.1 hypothetical protein 4774846 423368004956 SNSL254_A4900 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043788.1 4774373 R 423368 CDS YP_002043789.1 194443777 complement(4774837..4775781) 1 NC_011080.1 identified by match to protein family HMM PF06738; hypothetical protein 4775781 423368004957 SNSL254_A4901 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043789.1 4774837 R 423368 CDS YP_002043790.1 194442656 complement(4775795..4775950) 1 NC_011080.1 hypothetical protein 4775950 423368004958 SNSL254_A4902 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043790.1 4775795 R 423368 CDS YP_002043791.1 194444590 4776326..4777051 1 NC_011080.1 identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 4777051 423368004959 SNSL254_A4903 Salmonella enterica subsp. enterica serovar Newport str. SL254 LuxR family transcriptional regulator YP_002043791.1 4776326 D 423368 CDS YP_002043792.1 194445125 4777012..4777686 1 NC_011080.1 regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4777686 423368004960 SNSL254_A4904 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding transcriptional activator BglJ YP_002043792.1 4777012 D 423368 CDS YP_002043793.1 194443881 complement(4777737..4778195) 1 NC_011080.1 identified by match to protein family HMM PF04073; prolyl-tRNA synthetase 4778195 423368004961 SNSL254_A4905 Salmonella enterica subsp. enterica serovar Newport str. SL254 prolyl-tRNA synthetase YP_002043793.1 4777737 R 423368 CDS YP_002043794.1 194442579 complement(4778346..4779134) 1 NC_011080.1 identified by match to protein family HMM PF06276; ferric hydroximate transport ferric iron reductase 4779134 423368004962 SNSL254_A4906 Salmonella enterica subsp. enterica serovar Newport str. SL254 ferric hydroximate transport ferric iron reductase YP_002043794.1 4778346 R 423368 CDS YP_002043795.2 448967565 complement(4779255..4780319) 1 NC_011080.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 4780319 423368004963 SNSL254_A4907 Salmonella enterica subsp. enterica serovar Newport str. SL254 diguanylate cyclase YP_002043795.2 4779255 R 423368 CDS YP_002043796.1 194446487 4780570..4780806 1 NC_011080.1 identified by match to protein family HMM PF07256; tryptophan-specific transport protein 4780806 423368004964 SNSL254_A4908 Salmonella enterica subsp. enterica serovar Newport str. SL254 tryptophan-specific transport protein YP_002043796.1 4780570 D 423368 CDS YP_002043797.1 194444545 complement(4781347..4782375) 1 NC_011080.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 4782375 rsmC 423368004968 rsmC Salmonella enterica subsp. enterica serovar Newport str. SL254 16S ribosomal RNA m2G1207 methyltransferase YP_002043797.1 4781347 R 423368 CDS YP_002043798.1 194444565 4782478..4782915 1 NC_011080.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4782915 holD 423368004969 holD Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA polymerase III subunit psi YP_002043798.1 4782478 D 423368 CDS YP_002043799.2 448967566 4782860..4783306 1 NC_011080.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 4783306 rimI 423368004970 rimI Salmonella enterica subsp. enterica serovar Newport str. SL254 ribosomal-protein-alanine acetyltransferase YP_002043799.2 4782860 D 423368 CDS YP_002043800.1 194443849 4783328..4784005 1 NC_011080.1 'manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily'; nucleotidase 4784005 yjjG 423368004971 yjjG Salmonella enterica subsp. enterica serovar Newport str. SL254 nucleotidase YP_002043800.1 4783328 D 423368 CDS YP_002043801.1 194442414 4784097..4785686 1 NC_011080.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4785686 prfC 423368004972 prfC Salmonella enterica subsp. enterica serovar Newport str. SL254 peptide chain release factor 3 YP_002043801.1 4784097 D 423368 CDS YP_002043802.1 194444985 4786088..4786705 1 NC_011080.1 identified by match to protein family HMM PF04972; hypothetical protein 4786705 osmY 423368004973 osmY Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043802.1 4786088 D 423368 CDS YP_002043803.1 194445182 4786834..4786995 1 NC_011080.1 identified by glimmer; hypothetical protein 4786995 423368004974 SNSL254_A4918 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043803.1 4786834 D 423368 CDS YP_002043804.1 194446042 4787098..4788192 1 NC_011080.1 identified by match to protein family HMM PF01734; patatin 4788192 423368004975 SNSL254_A4919 Salmonella enterica subsp. enterica serovar Newport str. SL254 patatin YP_002043804.1 4787098 D 423368 CDS YP_002043805.1 194446554 4788189..4788962 1 NC_011080.1 identified by match to protein family HMM PF01026; deoxyribonuclease YjjV 4788962 423368004976 SNSL254_A4920 Salmonella enterica subsp. enterica serovar Newport str. SL254 deoxyribonuclease YjjV YP_002043805.1 4788189 D 423368 CDS YP_002043806.1 194442357 complement(4788995..4789858) 1 NC_011080.1 pyruvate formate lyase activating enzyme 4789858 423368004977 SNSL254_A4921 Salmonella enterica subsp. enterica serovar Newport str. SL254 pyruvate formate lyase activating enzyme YP_002043806.1 4788995 R 423368 CDS YP_002043807.1 194446032 complement(4789830..4791380) 1 NC_011080.1 hypothetical protein 4791380 423368004978 SNSL254_A4922 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043807.1 4789830 R 423368 CDS YP_002043808.1 194443455 4791604..4792419 1 NC_011080.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4792419 deoC 423368004979 deoC Salmonella enterica subsp. enterica serovar Newport str. SL254 deoxyribose-phosphate aldolase YP_002043808.1 4791604 D 423368 CDS YP_002043809.1 194443952 4792543..4793865 1 NC_011080.1 'Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate'; thymidine phosphorylase 4793865 deoA 423368004980 deoA Salmonella enterica subsp. enterica serovar Newport str. SL254 thymidine phosphorylase YP_002043809.1 4792543 D 423368 CDS YP_002043810.1 194445257 4793917..4795140 1 NC_011080.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4795140 deoB 423368004981 deoB Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphopentomutase YP_002043810.1 4793917 D 423368 CDS YP_002043811.1 194442299 4795350..4796069 1 NC_011080.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4796069 deoD 423368004982 deoD Salmonella enterica subsp. enterica serovar Newport str. SL254 purine nucleoside phosphorylase YP_002043811.1 4795350 D 423368 CDS YP_002043812.1 194444068 complement(4796107..4796679) 1 NC_011080.1 hypothetical protein 4796679 423368004983 SNSL254_A4927 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043812.1 4796107 R 423368 CDS YP_002043813.1 194443551 complement(4796676..4799084) 1 NC_011080.1 identified by match to protein family HMM PF00577; fimbrial usher protein 4799084 423368004984 SNSL254_A4928 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial usher protein YP_002043813.1 4796676 R 423368 CDS YP_002043814.1 194446416 complement(4799098..4799805) 1 NC_011080.1 member of the periplasmic pilus chaperone family of proteins; periplasmic chaperone protein 4799805 423368004985 SNSL254_A4929 Salmonella enterica subsp. enterica serovar Newport str. SL254 periplasmic chaperone protein YP_002043814.1 4799098 R 423368 CDS YP_002043815.1 194445908 complement(4799883..4800572) 1 NC_011080.1 identified by match to protein family HMM PF06551; hypothetical protein 4800572 423368004986 SNSL254_A4930 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043815.1 4799883 R 423368 CDS YP_002043816.1 194443087 complement(4800620..4801309) 1 NC_011080.1 identified by match to protein family HMM PF06551; hypothetical protein 4801309 423368004987 SNSL254_A4931 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043816.1 4800620 R 423368 CDS YP_002043817.1 194442612 4801371..4801520 1 NC_011080.1 identified by glimmer; hypothetical protein 4801520 423368004988 SNSL254_A4932 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043817.1 4801371 D 423368 CDS YP_002043818.1 194443445 complement(4801622..4802638) 1 NC_011080.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A 4802638 lplA 423368004989 lplA Salmonella enterica subsp. enterica serovar Newport str. SL254 lipoate-protein ligase A YP_002043818.1 4801622 R 423368 CDS YP_002043819.1 194443877 complement(4802672..4803316) 1 NC_011080.1 hypothetical protein 4803316 423368004990 SNSL254_A4935 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043819.1 4802672 R 423368 CDS YP_002043820.1 194444523 4803433..4804401 1 NC_011080.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4804401 serB 423368004991 serB Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoserine phosphatase YP_002043820.1 4803433 D 423368 CDS YP_002043821.1 194442809 4804485..4805867 1 NC_011080.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4805867 radA 423368004992 radA Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA repair protein RadA YP_002043821.1 4804485 D 423368 CDS YP_002043822.1 194442236 4806018..4807250 1 NC_011080.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4807250 423368004993 SNSL254_A4938 Salmonella enterica subsp. enterica serovar Newport str. SL254 nicotinamide-nucleotide adenylyltransferase YP_002043822.1 4806018 D 423368 CDS YP_002043823.1 194444102 complement(4807368..4809035) 1 NC_011080.1 'ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence'; ABC transporter ATP-binding protein 4809035 423368004994 SNSL254_A4939 Salmonella enterica subsp. enterica serovar Newport str. SL254 ABC transporter ATP-binding protein YP_002043823.1 4807368 R 423368 CDS YP_002043824.1 194443158 4809244..4811181 1 NC_011080.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4811181 423368004995 SNSL254_A4940 Salmonella enterica subsp. enterica serovar Newport str. SL254 lytic murein transglycosylase YP_002043824.1 4809244 D 423368 CDS YP_002043825.1 194444790 4811239..4811565 1 NC_011080.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4811565 trpR 423368004996 trpR Salmonella enterica subsp. enterica serovar Newport str. SL254 Trp operon repressor YP_002043825.1 4811239 D 423368 CDS YP_002043826.1 194444478 complement(4811667..4812182) 1 NC_011080.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 4812182 423368004997 SNSL254_A4942 Salmonella enterica subsp. enterica serovar Newport str. SL254 NTPase YP_002043826.1 4811667 R 423368 CDS YP_002043827.1 194445147 4812231..4812878 1 NC_011080.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4812878 423368004998 SNSL254_A4943 Salmonella enterica subsp. enterica serovar Newport str. SL254 phosphoglycerate mutase YP_002043827.1 4812231 D 423368 CDS YP_002043828.1 194446090 complement(4812875..4813744) 1 NC_011080.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; right origin-binding protein 4813744 rob 423368004999 rob Salmonella enterica subsp. enterica serovar Newport str. SL254 right origin-binding protein YP_002043828.1 4812875 R 423368 CDS YP_002043829.1 194443788 4813956..4814429 1 NC_011080.1 identified by match to protein family HMM PF05981; hypothetical protein 4814429 423368005000 SNSL254_A4945 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043829.1 4813956 D 423368 CDS YP_002043830.1 194444693 4814442..4815131 1 NC_011080.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4815131 423368005001 SNSL254_A4946 Salmonella enterica subsp. enterica serovar Newport str. SL254 DNA-binding response regulator CreB YP_002043830.1 4814442 D 423368 CDS YP_002043831.1 194445336 4815131..4816555 1 NC_011080.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4816555 423368005002 SNSL254_A4947 Salmonella enterica subsp. enterica serovar Newport str. SL254 sensory histidine kinase CreC YP_002043831.1 4815131 D 423368 CDS YP_002043832.1 194443384 4816613..4817962 1 NC_011080.1 identified by match to protein family HMM PF06123; hypothetical protein 4817962 423368005003 SNSL254_A4948 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043832.1 4816613 D 423368 CDS YP_002043833.1 194444015 complement(4818020..4819105) 1 NC_011080.1 identified by match to protein family HMM PF00419; major fimbrial subunit 4819105 423368005004 SNSL254_A4949 Salmonella enterica subsp. enterica serovar Newport str. SL254 major fimbrial subunit YP_002043833.1 4818020 R 423368 CDS YP_002043834.1 194442680 complement(4819146..4819703) 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial subunit 4819703 423368005005 SNSL254_A4950 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial subunit YP_002043834.1 4819146 R 423368 CDS YP_002043835.2 448967567 complement(4819721..4822258) 1 NC_011080.1 identified by match to protein family HMM PF00577; outer membrane usher protein SfmD 4822258 423368005006 SNSL254_A4951 Salmonella enterica subsp. enterica serovar Newport str. SL254 outer membrane usher protein SfmD YP_002043835.2 4819721 R 423368 CDS YP_002043836.1 194445989 complement(4822304..4822987) 1 NC_011080.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pili assembly chaperone 4822987 423368005007 SNSL254_A4952 Salmonella enterica subsp. enterica serovar Newport str. SL254 pili assembly chaperone YP_002043836.1 4822304 R 423368 CDS YP_002043837.1 194446625 complement(4823058..4823603) 1 NC_011080.1 identified by match to protein family HMM PF00419; fimbrial chaperone 4823603 423368005008 SNSL254_A4953 Salmonella enterica subsp. enterica serovar Newport str. SL254 fimbrial chaperone YP_002043837.1 4823058 R 423368 CDS YP_002043838.1 194446391 complement(4823942..4824613) 1 NC_011080.1 hypothetical protein 4824613 423368005009 SNSL254_A4954 Salmonella enterica subsp. enterica serovar Newport str. SL254 hypothetical protein YP_002043838.1 4823942 R 423368 CDS YP_002043839.1 194443347 complement(4825579..4826295) 1 NC_011080.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 4826295 arcA 423368005011 arcA Salmonella enterica subsp. enterica serovar Newport str. SL254 two-component response regulator YP_002043839.1 4825579 R 423368 CDS YP_002043840.1 194443042 4826931..4827617 1 NC_011080.1 member of the SPOUT superfamily of methyltransferases; RNA methyltransferase 4827617 423368005012 SNSL254_A4957 Salmonella enterica subsp. enterica serovar Newport str. SL254 RNA methyltransferase YP_002043840.1 4826931 D 423368 CDS