-- dump date 20140620_053817 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 454169000001 SEQ_END SEQ_END NC_011081.1 91374 91374 DR NC_011081.1; contig end 91374..91374 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 454169000002 SEQ_END SEQ_END NC_011082.1 3373 3373 DR NC_011082.1; contig end 3373..3373 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 454169000003 SEQ_END SEQ_END NC_011083.1 4888768 4888768 DR NC_011083.1; contig end 4888768..4888768 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043841.1 CDS SeHA_A0001 NC_011081.1 128 247 R identified by glimmer; putative; hypothetical protein complement(128..247) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043842.1 CDS repZ NC_011081.1 410 1486 D replication initiation protein 410..1486 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043843.1 CDS SeHA_A0003 NC_011081.1 1818 1967 D identified by glimmer; putative; hypothetical protein 1818..1967 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043844.1 CDS SeHA_A0004 NC_011081.1 2218 2340 D hypothetical protein 2218..2340 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043845.1 CDS SeHA_A0005 NC_011081.1 2395 2664 D hypothetical protein 2395..2664 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043846.1 CDS SeHA_A0006 NC_011081.1 2661 2942 D identified by match to protein family HMM PF05016; YacB 2661..2942 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043847.1 CDS SeHA_A0007 NC_011081.1 2982 3830 D identified by match to protein family HMM PF00929; YacC 2982..3830 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043848.1 CDS SeHA_A0008 NC_011081.1 3947 4420 D YadA 3947..4420 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043849.1 CDS SeHA_A0009 NC_011081.1 4461 4580 D identified by glimmer; putative; hypothetical protein 4461..4580 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043850.1 CDS SeHA_A0010 NC_011081.1 4652 4774 D identified by glimmer; putative; hypothetical protein 4652..4774 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043851.1 CDS SeHA_A0011 NC_011081.1 4897 5163 R hypothetical protein complement(4897..5163) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043852.1 CDS SeHA_A0012 NC_011081.1 5163 5696 R hypothetical protein complement(5163..5696) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043853.1 CDS SeHA_A0013 NC_011081.1 5713 6315 R YafB complement(5713..6315) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043854.1 CDS SeHA_A0014 NC_011081.1 6472 6591 R identified by glimmer; putative; hypothetical protein complement(6472..6591) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043855.1 CDS SeHA_A0015 NC_011081.1 6669 8015 D YagA 6669..8015 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043856.1 CDS SeHA_A0016 NC_011081.1 8024 8188 D identified by glimmer; putative; hypothetical protein 8024..8188 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043857.1 CDS SeHA_A0017 NC_011081.1 8294 10174 D identified by match to protein family HMM PF01024; colicin Ib protein 8294..10174 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043858.1 CDS SeHA_A0018 NC_011081.1 10192 10539 R colicin-Ib immunity protein complement(10192..10539) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043859.1 CDS SeHA_A0020 NC_011081.1 10558 10689 R identified by glimmer; putative; hypothetical protein complement(10558..10689) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043860.1 CDS SeHA_A0021 NC_011081.1 11026 11616 R hypothetical protein complement(11026..11616) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043861.1 CDS SeHA_A0022 NC_011081.1 11616 11861 R hypothetical protein complement(11616..11861) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043862.1 CDS SeHA_A0023 NC_011081.1 11858 12025 R hypothetical protein complement(11858..12025) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043863.1 CDS SeHA_A0024 NC_011081.1 12027 12176 R identified by glimmer; putative; hypothetical protein complement(12027..12176) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043864.1 CDS SeHA_A0025 NC_011081.1 12224 13225 D hypothetical protein 12224..13225 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043865.1 CDS SeHA_A0026 NC_011081.1 14244 14498 R identified by glimmer; putative; hypothetical protein complement(14244..14498) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043866.1 CDS SeHA_A0027 NC_011081.1 14543 15469 R hypothetical protein complement(14543..15469) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043867.1 CDS SeHA_A0028 NC_011081.1 15562 15675 R identified by glimmer; putative; hypothetical protein complement(15562..15675) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043868.1 CDS SeHA_A0030 NC_011081.1 15962 16414 D hypothetical protein 15962..16414 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043869.1 CDS SeHA_A0031 NC_011081.1 16416 17195 D identified by match to protein family HMM PF00589; resolvase 16416..17195 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043870.1 CDS SeHA_A0032 NC_011081.1 17375 18019 D ParA protein homolog 17375..18019 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043871.1 CDS SeHA_A0033 NC_011081.1 18106 18414 D putative 60 kDa chaperonin 18106..18414 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043872.1 CDS SeHA_A0034 NC_011081.1 18828 19808 D identified by match to protein family HMM PF06406; plasmid segregation protein ParM 18828..19808 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043873.1 CDS SeHA_A0035 NC_011081.1 19801 20217 D plasmid stability protein 19801..20217 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043874.1 CDS umuC NC_011081.1 20219 21493 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(20219..21493) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043875.1 CDS SeHA_A0037 NC_011081.1 21493 21930 R identified by match to protein family HMM PF00717; protein ImpA complement(21493..21930) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043876.1 CDS SeHA_A0038 NC_011081.1 21927 22175 R identified by match to protein family HMM PF06183; protein ImpC complement(21927..22175) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043877.1 CDS SeHA_A0039 NC_011081.1 22172 22336 R identified by glimmer; putative; hypothetical protein complement(22172..22336) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043878.1 CDS SeHA_A0040 NC_011081.1 22438 22551 R identified by glimmer; putative; hypothetical protein complement(22438..22551) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043879.1 CDS SeHA_A0041 NC_011081.1 22569 23495 D identified by match to protein family HMM PF06924; hypothetical protein 22569..23495 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043880.1 CDS SeHA_A0042 NC_011081.1 23647 23772 R hypothetical protein complement(23647..23772) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043881.1 CDS SeHA_A0043 NC_011081.1 23880 24563 D identified by match to protein family HMM PF01555; putative methylase 23880..24563 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043882.1 CDS SeHA_A0044 NC_011081.1 24564 24785 D hypothetical protein 24564..24785 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043883.1 CDS SeHA_A0045 NC_011081.1 24797 25231 D identified by match to protein family HMM PF07128; hypothetical protein 24797..25231 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043884.1 CDS SeHA_A0046 NC_011081.1 25231 26052 D hypothetical protein 25231..26052 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043885.1 CDS SeHA_A0047 NC_011081.1 26470 26895 D identified by match to protein family HMM PF03230; putative antirestriction protein 26470..26895 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043886.1 CDS SeHA_A0048 NC_011081.1 26942 27364 D hypothetical protein 26942..27364 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043887.1 CDS SeHA_A0049 NC_011081.1 27361 27552 D hypothetical protein 27361..27552 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043888.1 CDS SeHA_A0051 NC_011081.1 28322 28849 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA-binding protein 28322..28849 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043889.1 CDS SeHA_A0052 NC_011081.1 28907 29140 D identified by match to protein family HMM PF06006; hypothetical protein 28907..29140 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043890.1 CDS SeHA_A0053 NC_011081.1 29199 31157 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB-like partition protein 29199..31157 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043891.1 CDS psiB NC_011081.1 31212 31646 D identified by match to protein family HMM PF06290; plasmid SOS inhibition protein B 31212..31646 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043892.1 CDS SeHA_A0055 NC_011081.1 31643 32362 D PsiA; plasmid SOS inhibition protein A 31643..32362 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043893.1 CDS SeHA_A0056 NC_011081.1 32359 32955 D hypothetical protein 32359..32955 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043894.1 CDS SeHA_A0057 NC_011081.1 33117 33257 R hypothetical protein complement(33117..33257) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043895.1 CDS SeHA_A0058 NC_011081.1 33418 33918 D identified by match to protein family HMM PF07275; anti-restriction protein 33418..33918 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043896.1 CDS SeHA_A0059 NC_011081.1 33902 34045 D identified by glimmer; putative; hypothetical protein 33902..34045 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043897.1 CDS SeHA_A0062 NC_011081.1 34626 34844 R identified by glimmer; putative; hypothetical protein complement(34626..34844) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043898.1 CDS SeHA_A0063 NC_011081.1 34860 35081 D hypothetical protein 34860..35081 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043899.1 CDS SeHA_A0064 NC_011081.1 35173 35439 D hypothetical protein 35173..35439 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043900.1 CDS SeHA_A0065 NC_011081.1 35504 36445 D identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 35504..36445 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043901.1 CDS SeHA_A0066 NC_011081.1 36507 36677 D YdgA 36507..36677 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043902.1 CDS SeHA_A0067 NC_011081.1 36708 36959 R hypothetical protein complement(36708..36959) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043903.1 CDS SeHA_A0068 NC_011081.1 36993 37190 R hypothetical protein complement(36993..37190) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043904.1 CDS SeHA_A0069 NC_011081.1 37160 37369 R hypothetical protein complement(37160..37369) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043905.1 CDS SeHA_A0070 NC_011081.1 37539 38387 D hypothetical protein 37539..38387 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043906.1 CDS SeHA_A0071 NC_011081.1 38472 38807 R hypothetical protein complement(38472..38807) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043907.1 CDS SeHA_A0072 NC_011081.1 38797 38913 R identified by glimmer; putative; hypothetical protein complement(38797..38913) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043908.1 CDS SeHA_A0073 NC_011081.1 38993 39373 D identified by match to protein family HMM PF01402; relaxosome component 38993..39373 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043909.1 CDS SeHA_A0074 NC_011081.1 39384 42083 D identified by match to protein family HMM PF03432; putative relaxase/mobilization nuclease domain protein 39384..42083 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043910.1 CDS SeHA_A0075 NC_011081.1 42120 44411 R TrbC complement(42120..44411) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043911.1 CDS SeHA_A0076 NC_011081.1 44404 45474 R TrbB complement(44404..45474) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043912.1 CDS SeHA_A0077 NC_011081.1 45493 46701 R conjugal transfer protein complement(45493..46701) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043913.1 CDS SeHA_A0078 NC_011081.1 46990 47145 D identified by match to protein family HMM PF01848; hypothetical protein 46990..47145 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043914.1 CDS SeHA_A0079 NC_011081.1 47217 47468 R hypothetical protein complement(47217..47468) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043915.1 CDS SeHA_A0080 NC_011081.1 48127 48303 R hypothetical protein complement(48127..48303) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043916.1 CDS SeHA_A0081 NC_011081.1 48332 48460 R identified by glimmer; putative; hypothetical protein complement(48332..48460) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043917.1 CDS SeHA_A0082 NC_011081.1 48695 48904 D hypothetical protein 48695..48904 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043918.1 CDS SeHA_A0083 NC_011081.1 48976 49638 R surface exclusion protein complement(48976..49638) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043919.1 CDS SeHA_A0084 NC_011081.1 49709 51877 R integral membrane protein complement(49709..51877) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043920.1 CDS SeHA_A0085 NC_011081.1 51974 52558 R TraX complement(51974..52558) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043921.1 CDS SeHA_A0086 NC_011081.1 52587 53789 R lipoprotein complement(52587..53789) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043922.1 CDS SeHA_A0087 NC_011081.1 53756 54370 R TraV complement(53756..54370) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043923.1 CDS SeHA_A0088 NC_011081.1 54370 57414 R TraU complement(54370..57414) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043924.1 CDS SeHA_A0089 NC_011081.1 57504 58304 R hypothetical protein complement(57504..58304) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043925.1 CDS SeHA_A0090 NC_011081.1 58288 58476 R hypothetical protein complement(58288..58476) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043926.1 CDS SeHA_A0091 NC_011081.1 58540 58944 R TraR complement(58540..58944) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043927.1 CDS SeHA_A0092 NC_011081.1 58995 59522 R TraQ complement(58995..59522) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043928.1 CDS SeHA_A0093 NC_011081.1 59522 60226 R TraP complement(59522..60226) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043929.1 CDS SeHA_A0094 NC_011081.1 60226 61515 R TraO complement(60226..61515) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043930.1 CDS SeHA_A0095 NC_011081.1 61518 62501 R TraN complement(61518..62501) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043931.1 CDS SeHA_A0096 NC_011081.1 62512 63204 R TraM complement(62512..63204) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043932.1 CDS SeHA_A0097 NC_011081.1 63201 63548 R TraL complement(63201..63548) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043933.1 CDS SeHA_A0098 NC_011081.1 63566 67333 R identified by match to protein family HMM PF01751; DNA primase complement(63566..67333) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043934.1 CDS SeHA_A0099 NC_011081.1 67423 67974 R phospholipase D (PLD) family protein complement(67423..67974) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043935.1 CDS SeHA_A0100 NC_011081.1 67989 68279 R TraK complement(67989..68279) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043936.1 CDS traJ NC_011081.1 68276 69424 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR02525; plasmid transfer ATPase TraJ complement(68276..69424) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043937.1 CDS SeHA_A0102 NC_011081.1 69421 70239 R lipoprotein complement(69421..70239) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043938.1 CDS SeHA_A0103 NC_011081.1 70236 70694 R lipoprotein complement(70236..70694) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043939.1 CDS SeHA_A0104 NC_011081.1 70926 71075 D identified by glimmer; putative; hypothetical protein 70926..71075 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043940.1 CDS SeHA_A0105 NC_011081.1 71089 71673 R identified by match to protein family HMM PF00300; TraG complement(71089..71673) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043941.1 CDS SeHA_A0106 NC_011081.1 71733 72935 R TraF complement(71733..72935) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043942.1 CDS SeHA_A0107 NC_011081.1 73021 73845 R TraE complement(73021..73845) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043943.1 CDS SeHA_A0108 NC_011081.1 73996 75183 R identified by match to protein family HMM PF00589; shufflon-specific DNA recombinase complement(73996..75183) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043944.1 CDS SeHA_A0109 NC_011081.1 75462 76808 R identified by match to protein family HMM PF04917; shufflon protein B' complement(75462..76808) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043945.1 CDS SeHA_A0110 NC_011081.1 76796 77401 R identified by match to protein family HMM PF01478; prepilin peptidase complement(76796..77401) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043946.1 CDS SeHA_A0111 NC_011081.1 77437 77997 R identified by match to protein family HMM PF01464; lytic transglycosylase PilT complement(77437..77997) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043947.1 CDS SeHA_A0112 NC_011081.1 78007 78621 R identified by match to protein family HMM PF08805; typeIV prepilin complement(78007..78621) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043948.1 CDS SeHA_A0113 NC_011081.1 78639 79736 R identified by match to protein family HMM PF00482; integral membrane protein complement(78639..79736) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043949.1 CDS SeHA_A0114 NC_011081.1 79749 81302 R identified by match to protein family HMM PF00437; ATP-binding protein complement(79749..81302) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043950.1 CDS pilP NC_011081.1 81313 81765 R identified by match to protein family HMM TIGR03021; type IV pilus biogenesis protein PilP complement(81313..81765) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043951.1 CDS SeHA_A0116 NC_011081.1 81752 83047 R identified by match to protein family HMM PF06864; PilO protein complement(81752..83047) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043952.1 CDS SeHA_A0117 NC_011081.1 83040 84722 R identified by match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM TIGR02520; type IVB pilus formation outer membrane protein, R64 PilN family complement(83040..84722) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043953.1 CDS SeHA_A0118 NC_011081.1 84736 85173 R identified by match to protein family HMM PF07419; PilM protein complement(84736..85173) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043954.1 CDS SeHA_A0119 NC_011081.1 85173 86240 R PilL protein complement(85173..86240) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043955.1 CDS SeHA_A0120 NC_011081.1 86274 86567 R PilK protein complement(86274..86567) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043956.1 CDS SeHA_A0121 NC_011081.1 86620 86751 D identified by glimmer; putative; hypothetical protein 86620..86751 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043957.1 CDS SeHA_A0122 NC_011081.1 86864 86995 R PilJ protein complement(86864..86995) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043958.1 CDS SeHA_A0123 NC_011081.1 87012 87230 D identified by glimmer; putative; hypothetical protein 87012..87230 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043959.1 CDS SeHA_A0125 NC_011081.1 87336 87590 R hypothetical protein complement(87336..87590) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043960.1 CDS SeHA_A0124 NC_011081.1 87561 87677 D identified by glimmer; putative; hypothetical protein 87561..87677 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043961.1 CDS SeHA_A0126 NC_011081.1 87752 88303 R hypothetical protein complement(87752..88303) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043962.1 CDS SeHA_A0127 NC_011081.1 88476 89159 R hypothetical protein complement(88476..89159) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043963.1 CDS SeHA_A0128 NC_011081.1 89262 89441 D identified by glimmer; putative; hypothetical protein 89262..89441 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043964.1 CDS SeHA_A0130 NC_011081.1 89952 90074 R identified by glimmer; putative; hypothetical protein complement(89952..90074) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043965.1 CDS SeHA_A0131 NC_011081.1 90388 90675 R identified by match to protein family HMM PF08281; TraA complement(90388..90675) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043966.1 CDS rop NC_011082.1 182 343 R identified by match to protein family HMM PF01815; regulatory protein Rop complement(182..343) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043967.1 CDS SeHA_B0002 NC_011082.1 511 663 D identified by glimmer; putative; hypothetical protein 511..663 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043968.1 CDS SeHA_B0003 NC_011082.1 750 2324 D identified by match to protein family HMM PF03432; mobilization protein MbeA 750..2324 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043969.1 CDS SeHA_B0004 NC_011082.1 2453 2866 R identified by glimmer; putative; hypothetical protein complement(2453..2866) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043970.1 CDS thrA NC_011083.1 337 2799 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 337..2799 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043971.1 CDS thrB NC_011083.1 2801 3730 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2801..3730 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043972.1 CDS thrC NC_011083.1 3734 5020 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3734..5020 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043973.1 CDS SeHA_C0005 NC_011083.1 5113 5886 R identified by match to protein family HMM PF03883; hypothetical protein complement(5113..5886) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043974.1 CDS SeHA_C0006 NC_011083.1 5965 7422 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino-acid carrier protein AlsT complement(5965..7422) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043975.1 CDS tal2 NC_011083.1 7664 8617 D identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase B 7664..8617 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043976.1 CDS mogA NC_011083.1 8728 9318 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 8728..9318 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043977.1 CDS SeHA_C0009 NC_011083.1 9375 9941 R identified by match to protein family HMM PF01184; hypothetical protein complement(9375..9941) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043978.1 CDS SeHA_C0010 NC_011083.1 10091 10804 R identified by match to protein family HMM PF03667; hypothetical protein complement(10091..10804) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043979.1 CDS SeHA_C0011 NC_011083.1 10840 11235 R hypothetical protein complement(10840..11235) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043980.1 CDS SeHA_C0012 NC_011083.1 11299 11424 D identified by glimmer; putative; hypothetical protein 11299..11424 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043981.1 CDS dnaK NC_011083.1 11593 13509 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 11593..13509 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043982.1 CDS dnaJ NC_011083.1 13595 14734 D 'chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion'; chaperone protein DnaJ 13595..14734 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043983.1 CDS SeHA_C0015 NC_011083.1 14846 14959 D identified by glimmer; putative; hypothetical protein 14846..14959 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043984.1 CDS SeHA_C0016 NC_011083.1 15015 15962 D identified by match to protein family HMM PF00126; transcriptional regulator 15015..15962 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043985.1 CDS SeHA_C0017 NC_011083.1 16131 16433 D bacteriophage protein 16131..16433 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043986.1 CDS SeHA_C0018 NC_011083.1 16494 17027 R identified by match to protein family HMM PF05838; match to protein family HMM PF09374; hypothetical protein complement(16494..17027) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043987.1 CDS SeHA_C0019 NC_011083.1 17044 17487 R hypothetical protein complement(17044..17487) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043988.1 CDS SeHA_C0020 NC_011083.1 17868 19967 D identified by match to protein family HMM PF00704; match to protein family HMM PF02839; exochitinase 17868..19967 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043989.1 CDS SeHA_C0021 NC_011083.1 20059 23055 D hydroxymethyltransferase 20059..23055 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043990.1 CDS SeHA_C0022 NC_011083.1 23336 24040 D hypothetical protein 23336..24040 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043991.1 CDS SeHA_C0023 NC_011083.1 24557 25537 D identified by match to protein family HMM PF01609; IS5 transposase 24557..25537 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043992.1 CDS SeHA_C0024 NC_011083.1 25693 26211 D identified by match to protein family HMM PF00419; fimbrial subunit 25693..26211 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043993.2 CDS SeHA_C0025 NC_011083.1 26312 26998 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 26312..26998 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043994.1 CDS SeHA_C0026 NC_011083.1 26958 29624 D identified by match to protein family HMM PF00577; outer membrane usher protein FimD 26958..29624 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043995.1 CDS SeHA_C0027 NC_011083.1 29625 30632 D identified by match to protein family HMM PF00419; mannose binding protein FimH 29625..30632 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043996.1 CDS SeHA_C0028 NC_011083.1 30663 31178 D identified by match to protein family HMM PF00419; fimbrial subunit 30663..31178 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043997.1 CDS SeHA_C0029 NC_011083.1 31194 31712 D identified by match to protein family HMM PF00419; fimbrial subunit 31194..31712 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043998.2 CDS SeHA_C0030 NC_011083.1 31678 32409 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone 31678..32409 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002043999.1 CDS SeHA_C0031 NC_011083.1 32474 33319 D identified by match to protein family HMM PF01323; hypothetical protein 32474..33319 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044000.1 CDS SeHA_C0033 NC_011083.1 33745 34194 R hypothetical protein complement(33745..34194) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044001.1 CDS SeHA_C0036 NC_011083.1 35657 35776 R identified by glimmer; putative; hypothetical protein complement(35657..35776) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044002.1 CDS SeHA_C0037 NC_011083.1 36110 36874 D identified by match to protein family HMM PF07135; hypothetical protein 36110..36874 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044003.1 CDS SeHA_C0038 NC_011083.1 36895 38388 D identified by match to protein family HMM PF00884; sulfatase 36895..38388 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044004.1 CDS SeHA_C0039 NC_011083.1 38492 39688 D identified by match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 38492..39688 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044005.1 CDS SeHA_C0040 NC_011083.1 39706 40959 D hypothetical protein 39706..40959 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044006.1 CDS nhaA NC_011083.1 41647 42813 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 41647..42813 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044007.1 CDS nhaR NC_011083.1 42881 43774 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 42881..43774 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044008.1 CDS SeHA_C0045 NC_011083.1 43829 45868 R identified by match to protein family HMM PF01055; glycoside hydrolase, family 31 complement(43829..45868) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044009.1 CDS SeHA_C0046 NC_011083.1 45908 47281 R identified by match to protein family HMM TIGR00792; xylose-proton symporter complement(45908..47281) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044010.1 CDS rpsT NC_011083.1 47737 48000 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(47737..48000) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044011.1 CDS ribF NC_011083.1 48329 49267 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 48329..49267 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044012.1 CDS ileS NC_011083.1 49276 52146 D 'IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme'; isoleucyl-tRNA synthetase 49276..52146 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044013.1 CDS lspA NC_011083.1 52146 52646 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 52146..52646 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044014.1 CDS SeHA_C0051 NC_011083.1 52660 52791 D identified by glimmer; putative; hypothetical protein 52660..52791 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044015.1 CDS fkpB NC_011083.1 52801 53250 D identified by match to protein family HMM PF00254; FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase 52801..53250 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044016.1 CDS ispH NC_011083.1 53253 54203 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 53253..54203 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044017.1 CDS SeHA_C0054 NC_011083.1 54403 55605 D nitrite reductase 54403..55605 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044018.1 CDS SeHA_C0055 NC_011083.1 55621 56541 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 55621..56541 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044019.1 CDS SeHA_C0056 NC_011083.1 56563 57249 R identified by match to protein family HMM PF00072; transcriptional regulator CitB complement(56563..57249) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044020.1 CDS SeHA_C0057 NC_011083.1 57251 58909 R identified by match to protein family HMM PF02518; sensor kinase DpiB complement(57251..58909) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044021.1 CDS SeHA_C0058 NC_011083.1 59005 60306 R identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta complement(59005..60306) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044022.1 CDS oadA NC_011083.1 60319 62094 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(60319..62094) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044023.1 CDS SeHA_C0060 NC_011083.1 62111 62350 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(62111..62350) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044024.1 CDS SeHA_C0061 NC_011083.1 62509 63849 R identified by match to protein family HMM PF03390; match to protein family HMM TIGR00783; citrate-sodium symporter complement(62509..63849) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044025.1 CDS citC NC_011083.1 64106 65137 D identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase 64106..65137 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044026.1 CDS citD NC_011083.1 65167 65460 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 65167..65460 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044027.1 CDS citE NC_011083.1 65457 66326 D identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta 65457..66326 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044028.1 CDS citF NC_011083.1 66337 67857 D identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha 66337..67857 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044029.1 CDS citX NC_011083.1 67857 68408 D identified by match to protein family HMM PF03802; match to protein family HMM TIGR03124; holo-ACP synthase CitX 67857..68408 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044030.1 CDS citG NC_011083.1 68386 69294 D identified by match to protein family HMM PF01874; match to protein family HMM TIGR03125; triphosphoribosyl-dephospho-CoA synthase CitG 68386..69294 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044031.1 CDS dapB NC_011083.1 69474 70295 D 'catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis'; dihydrodipicolinate reductase 69474..70295 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044032.1 CDS SeHA_C0069 NC_011083.1 70771 70917 R hypothetical protein complement(70771..70917) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044033.1 CDS carA NC_011083.1 71131 72306 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 71131..72306 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044034.1 CDS carB NC_011083.1 72325 75552 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 72325..75552 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083666.1 CDS SeHA_C0072 NC_011083.1 75826 76221 D transcriptional activatory protein CaiF 75826..76221 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044035.1 CDS SeHA_C0073 NC_011083.1 76299 76895 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE complement(76299..76895) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044036.1 CDS SeHA_C0074 NC_011083.1 76993 77778 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase complement(76993..77778) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044037.1 CDS caiC NC_011083.1 77832 79385 R identified by match to protein family HMM PF00501; crotonobetaine/carnitine-CoA ligase complement(77832..79385) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044038.1 CDS SeHA_C0076 NC_011083.1 79448 80719 R 'catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine'; crotonobetainyl-CoA:carnitine CoA-transferase complement(79448..80719) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044039.1 CDS caiA NC_011083.1 80777 81919 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase complement(80777..81919) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044040.1 CDS caiT NC_011083.1 81954 83471 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter complement(81954..83471) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044041.1 CDS SeHA_C0079 NC_011083.1 83613 83729 D identified by glimmer; putative; hypothetical protein 83613..83729 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044042.1 CDS SeHA_C0080 NC_011083.1 83699 83884 D hypothetical protein 83699..83884 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044043.1 CDS fixA NC_011083.1 83952 84722 D 'required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase'; electron transfer flavoprotein FixA 83952..84722 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044044.1 CDS fixB NC_011083.1 84738 85679 D involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 84738..85679 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044045.1 CDS fixC NC_011083.1 85729 87015 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 85729..87015 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044046.1 CDS SeHA_C0084 NC_011083.1 87012 87299 D 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein 87012..87299 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044047.1 CDS SeHA_C0085 NC_011083.1 87380 88786 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; metabolite transport protein YaaU 87380..88786 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044048.1 CDS SeHA_C0086 NC_011083.1 88875 89105 D identified by match to protein family HMM PF06004; hypothetical protein 88875..89105 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044049.1 CDS SeHA_C0087 NC_011083.1 89385 89801 D hypothetical protein 89385..89801 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044050.1 CDS SeHA_C0088 NC_011083.1 90025 90315 R identified by match to protein family HMM PF07338; hypothetical protein complement(90025..90315) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044051.1 CDS SeHA_C0089 NC_011083.1 91213 93102 D identified by match to protein family HMM PF00884; match to protein family HMM TIGR01409; sulfatase 91213..93102 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044052.1 CDS kefF NC_011083.1 93656 94186 D 'Required for full activity of KefC, a potassium-proton antiporter'; glutathione-regulated potassium-efflux system ancillary protein KefF 93656..94186 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044053.1 CDS SeHA_C0091 NC_011083.1 94179 96041 D transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 94179..96041 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044054.1 CDS SeHA_C0092 NC_011083.1 96038 96163 R identified by glimmer; putative; hypothetical protein complement(96038..96163) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044055.1 CDS folA NC_011083.1 96239 96718 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 96239..96718 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044056.1 CDS apaH NC_011083.1 96824 97672 R 'hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP'; diadenosine tetraphosphatase complement(96824..97672) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044057.1 CDS apaG NC_011083.1 97683 98060 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(97683..98060) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044058.1 CDS ksgA NC_011083.1 98063 98884 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(98063..98884) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044059.1 CDS pdxA NC_011083.1 98881 99870 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(98881..99870) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044060.1 CDS surA NC_011083.1 99870 101156 R 'Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB'; peptidyl-prolyl cis-trans isomerase SurA complement(99870..101156) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044061.1 CDS imp NC_011083.1 101210 103570 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(101210..103570) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044062.1 CDS SeHA_C0100 NC_011083.1 103580 103741 R identified by glimmer; putative; hypothetical protein complement(103580..103741) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044063.1 CDS djlA NC_011083.1 103824 104636 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 103824..104636 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044064.1 CDS SeHA_C0102 NC_011083.1 104731 105390 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A complement(104731..105390) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044065.2 CDS rapA NC_011083.1 105402 108308 R 'transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA'; ATP-dependent helicase HepA complement(105402..108308) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044066.1 CDS SeHA_C0104 NC_011083.1 108482 110833 R 'Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C'; DNA polymerase II complement(108482..110833) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044067.2 CDS SeHA_C0105 NC_011083.1 110877 111497 R identified by match to protein family HMM PF02698; hypothetical protein complement(110877..111497) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044068.1 CDS SeHA_C0106 NC_011083.1 112015 112434 D hypothetical protein 112015..112434 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044069.1 CDS araD NC_011083.1 112440 113135 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(112440..113135) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044070.1 CDS araA NC_011083.1 113276 114778 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase complement(113276..114778) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044071.1 CDS araB NC_011083.1 114789 116498 R catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase complement(114789..116498) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044072.1 CDS SeHA_C0110 NC_011083.1 116839 117684 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 116839..117684 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044073.1 CDS SeHA_C0111 NC_011083.1 117803 118570 D identified by match to protein family HMM PF09335; hypothetical protein 117803..118570 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044074.1 CDS thiQ NC_011083.1 118609 119316 R with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit complement(118609..119316) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044075.1 CDS thiP NC_011083.1 119300 120910 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(119300..120910) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044076.1 CDS tbpA NC_011083.1 120886 121869 R part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit complement(120886..121869) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044077.1 CDS SeHA_C0116 NC_011083.1 121914 122033 R hypothetical protein complement(121914..122033) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044078.1 CDS SeHA_C0117 NC_011083.1 122047 123705 R activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR complement(122047..123705) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044079.1 CDS SeHA_C0120 NC_011083.1 124122 124235 D identified by glimmer; putative; hypothetical protein 124122..124235 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044080.1 CDS leuD NC_011083.1 124256 124861 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(124256..124861) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044081.1 CDS leuC NC_011083.1 124872 126272 R 'dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate'; isopropylmalate isomerase large subunit complement(124872..126272) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044082.1 CDS leuB NC_011083.1 126275 127366 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(126275..127366) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044083.1 CDS leuA NC_011083.1 127366 128937 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(127366..128937) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044084.1 CDS leuO NC_011083.1 129768 130712 D activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 129768..130712 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044085.1 CDS ilvB NC_011083.1 131004 132758 D 'catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive'; acetolactate synthase 3 catalytic subunit 131004..132758 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044086.1 CDS ilvH NC_011083.1 132758 133252 D 'with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit'; acetolactate synthase 3 regulatory subunit 132758..133252 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044087.1 CDS SeHA_C0129 NC_011083.1 133242 133364 R identified by glimmer; putative; hypothetical protein complement(133242..133364) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044088.1 CDS fruR NC_011083.1 133536 134540 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 133536..134540 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044089.1 CDS mraZ NC_011083.1 135146 135604 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 135146..135604 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044090.1 CDS mraW NC_011083.1 135606 136547 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 135606..136547 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044091.1 CDS ftsL NC_011083.1 136544 136909 D membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 136544..136909 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044092.1 CDS ftsI NC_011083.1 136925 138691 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI 136925..138691 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044093.1 CDS murE NC_011083.1 138678 140165 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 138678..140165 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044094.1 CDS murF NC_011083.1 140162 141520 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 140162..141520 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044095.1 CDS mraY NC_011083.1 141514 142596 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 141514..142596 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044096.1 CDS murD NC_011083.1 142599 143915 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 142599..143915 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044097.1 CDS ftsW NC_011083.1 143915 145159 D integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 143915..145159 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044098.1 CDS murG NC_011083.1 145156 146223 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 145156..146223 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044099.1 CDS murC NC_011083.1 146342 147817 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 146342..147817 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044100.1 CDS ddl NC_011083.1 147810 148730 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 147810..148730 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044101.1 CDS ftsQ NC_011083.1 148732 149562 D involved in septum formation; cell division protein FtsQ 148732..149562 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044102.1 CDS ftsA NC_011083.1 149559 150821 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 149559..150821 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044103.1 CDS ftsZ NC_011083.1 150882 152033 D 'GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function'; cell division protein FtsZ 150882..152033 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044104.1 CDS lpxC NC_011083.1 152134 153051 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 152134..153051 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083667.1 CDS secM NC_011083.1 153330 153827 D SecA regulator SecM 153330..153827 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044105.1 CDS secA NC_011083.1 153889 156594 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 153889..156594 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044106.1 CDS SeHA_C0149 NC_011083.1 156746 157141 D identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; nucleoside triphosphate pyrophosphohydrolase 156746..157141 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044108.1 CDS SeHA_C0151 NC_011083.1 157463 157654 R identified by match to protein family HMM PF03884; zinc-binding protein complement(157463..157654) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044109.1 CDS SeHA_C0152 NC_011083.1 157664 158407 R identified by match to protein family HMM PF07072; hypothetical protein complement(157664..158407) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044110.1 CDS coaE NC_011083.1 158407 159027 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(158407..159027) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044111.1 CDS guaC NC_011083.1 159253 160296 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 159253..160296 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044112.1 CDS SeHA_C0156 NC_011083.1 160327 161529 R identified by match to protein family HMM PF00482; type IV pilin biogenesis protein complement(160327..161529) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044113.1 CDS SeHA_C0157 NC_011083.1 161519 162904 R identified by match to protein family HMM PF00437; hypothetical protein complement(161519..162904) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044114.1 CDS SeHA_C0158 NC_011083.1 162914 163351 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; major pilin subunit complement(162914..163351) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044115.1 CDS nadC NC_011083.1 163573 164466 R 'catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide'; quinolinate phosphoribosyltransferase complement(163573..164466) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044116.1 CDS SeHA_C0160 NC_011083.1 164554 165117 D identified by match to protein family HMM PF01510; N-acetyl-anhydromuranmyl-L-alanine amidase 164554..165117 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044117.1 CDS SeHA_C0161 NC_011083.1 165114 165968 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 165114..165968 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044118.1 CDS SeHA_C0162 NC_011083.1 166060 167010 R identified by match to protein family HMM PF04616; alpha-N-arabinofuranosidase complement(166060..167010) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044119.1 CDS SeHA_C0163 NC_011083.1 167010 168416 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; Na+/galactoside symporter complement(167010..168416) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044120.1 CDS SeHA_C0164 NC_011083.1 168580 169950 R identified by match to protein family HMM PF00324; aromatic amino acid transporter complement(168580..169950) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044121.1 CDS pdhR NC_011083.1 170516 171280 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 170516..171280 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044122.1 CDS aceE NC_011083.1 171440 174103 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 171440..174103 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044123.1 CDS aceF NC_011083.1 174118 176007 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 174118..176007 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044124.1 CDS lpdA NC_011083.1 176207 177631 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 176207..177631 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044125.1 CDS SeHA_C0169 NC_011083.1 177709 177837 D identified by glimmer; putative; hypothetical protein 177709..177837 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044126.1 CDS SeHA_C0170 NC_011083.1 177920 178204 D hypothetical protein 177920..178204 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044127.1 CDS SeHA_C0171 NC_011083.1 178242 179033 R hypothetical protein complement(178242..179033) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044128.1 CDS SeHA_C0172 NC_011083.1 179046 180671 R hypothetical protein complement(179046..180671) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044129.1 CDS acnB NC_011083.1 181060 183657 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 181060..183657 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044130.1 CDS SeHA_C0174 NC_011083.1 183689 184660 R hypothetical protein complement(183689..184660) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044131.1 CDS SeHA_C0175 NC_011083.1 184733 185821 D identified by glimmer; putative; hypothetical protein 184733..185821 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044132.1 CDS SeHA_C0176 NC_011083.1 185855 186163 D identified by glimmer; putative; hypothetical protein 185855..186163 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044133.1 CDS SeHA_C0177 NC_011083.1 186178 187110 R hypothetical protein complement(186178..187110) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044134.1 CDS SeHA_C0178 NC_011083.1 187185 188324 D identified by glimmer; putative; hypothetical protein 187185..188324 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044135.1 CDS SeHA_C0179 NC_011083.1 188326 188505 D aconitate hydratase 188326..188505 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044136.1 CDS SeHA_C0180 NC_011083.1 188545 189009 R might be involved in hypersensitivity to nitrofurzone; inner membrane protein complement(188545..189009) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044137.1 CDS SeHA_C0181 NC_011083.1 189427 189750 R low molecular weight phosphotyrosine protein phosphatase complement(189427..189750) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044138.1 CDS SeHA_C0183 NC_011083.1 190021 190383 D identified by match to protein family HMM PF06062; hypothetical protein 190021..190383 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044139.1 CDS SeHA_C0184 NC_011083.1 190618 191571 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 190618..191571 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044140.1 CDS pdxA NC_011083.1 192829 193812 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 192829..193812 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044141.1 CDS SeHA_C0188 NC_011083.1 193822 194589 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 193822..194589 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044142.1 CDS speD NC_011083.1 194619 195413 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(194619..195413) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044143.1 CDS speE NC_011083.1 195434 196294 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(195434..196294) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044144.1 CDS SeHA_C0191 NC_011083.1 196401 196787 R hypothetical protein complement(196401..196787) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044145.1 CDS SeHA_C0192 NC_011083.1 196950 198560 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 196950..198560 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044146.2 CDS gcd NC_011083.1 198638 201028 R identified by match to protein family HMM PF01011; match to protein family HMM TIGR03074; quinoprotein glucose dehydrogenase complement(198638..201028) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044147.1 CDS hpt NC_011083.1 201234 201770 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 201234..201770 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044148.1 CDS SeHA_C0195 NC_011083.1 201828 202490 R catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase complement(201828..202490) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044149.1 CDS SeHA_C0196 NC_011083.1 202599 203525 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 202599..203525 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044150.1 CDS SeHA_C0197 NC_011083.1 203522 204292 D identified by match to protein family HMM PF01061; ABC transporter permease 203522..204292 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044151.1 CDS SeHA_C0198 NC_011083.1 204409 205488 R identified by match to protein family HMM PF00419; fimbrial protein complement(204409..205488) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044152.1 CDS SeHA_C0199 NC_011083.1 205497 208043 R identified by match to protein family HMM PF00577; outer membrane usher protein FimD complement(205497..208043) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044153.1 CDS SeHA_C0200 NC_011083.1 208070 208753 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC complement(208070..208753) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044154.1 CDS SeHA_C0201 NC_011083.1 208801 209343 R identified by match to protein family HMM PF00419; fimbrial subunit complement(208801..209343) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044155.1 CDS SeHA_C0202 NC_011083.1 209557 209670 R identified by glimmer; putative; hypothetical protein complement(209557..209670) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044156.1 CDS SeHA_C0203 NC_011083.1 209712 210152 D identified by match to protein family HMM PF03610; PTS system transporter subunit IIA 209712..210152 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044157.1 CDS SeHA_C0204 NC_011083.1 210214 211443 D identified by match to protein family HMM PF01522; polysaccharide deacetylase domain-containing protein 210214..211443 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044158.1 CDS SeHA_C0205 NC_011083.1 211445 212506 R identified by match to protein family HMM PF00419; fimbrial protein complement(211445..212506) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044159.1 CDS SeHA_C0206 NC_011083.1 212518 213117 R identified by match to protein family HMM PF00419; fimbrial protein complement(212518..213117) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044160.1 CDS SeHA_C0207 NC_011083.1 213136 213693 R fimbrial protein complement(213136..213693) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044161.1 CDS SeHA_C0208 NC_011083.1 213720 214247 R identified by match to protein family HMM PF00419; fimbrial protein complement(213720..214247) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044162.1 CDS SeHA_C0209 NC_011083.1 214327 216924 R similar to the fimbrial usher protein PapC; outer membrane usher protein complement(214327..216924) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044163.1 CDS SeHA_C0210 NC_011083.1 216992 217744 R identified by match to protein family HMM PF00345; chaperone protein EcpD complement(216992..217744) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044164.1 CDS SeHA_C0211 NC_011083.1 217831 218436 R identified by match to protein family HMM PF00419; major fimbrial subunit complement(217831..218436) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044165.1 CDS panD NC_011083.1 218714 219094 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(218714..219094) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044166.1 CDS panC NC_011083.1 219189 220043 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(219189..220043) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044167.1 CDS panB NC_011083.1 220169 220960 R 'catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate'; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(220169..220960) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044168.1 CDS folK NC_011083.1 221081 221560 R 'catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP'; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(221081..221560) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044169.2 CDS pcnB NC_011083.1 221557 222975 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase I complement(221557..222975) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044170.1 CDS SeHA_C0217 NC_011083.1 223116 224057 R 'this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu'; glutamyl-Q tRNA(Asp) synthetase complement(223116..224057) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044171.1 CDS dksA NC_011083.1 224081 224536 R identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420; RNA polymerase-binding transcription factor complement(224081..224536) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044172.1 CDS sfsA NC_011083.1 224713 225417 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(224713..225417) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044173.1 CDS SeHA_C0220 NC_011083.1 225434 225964 R identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase complement(225434..225964) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044174.1 CDS hrpB NC_011083.1 225992 228466 D similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 225992..228466 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044175.1 CDS mrcB NC_011083.1 228607 231129 D 'bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell'; penicillin-binding protein 1b 228607..231129 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044176.1 CDS SeHA_C0223 NC_011083.1 231268 231408 R identified by glimmer; putative; hypothetical protein complement(231268..231408) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044177.1 CDS fhuA NC_011083.1 231422 233665 D involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 231422..233665 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044178.1 CDS fhuC NC_011083.1 233714 234511 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 233714..234511 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044179.1 CDS SeHA_C0226 NC_011083.1 234511 235401 D Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 234511..235401 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044180.1 CDS SeHA_C0227 NC_011083.1 235398 237455 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 235398..237455 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044181.1 CDS SeHA_C0228 NC_011083.1 237643 237756 R identified by glimmer; putative; hypothetical protein complement(237643..237756) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044182.1 CDS SeHA_C0229 NC_011083.1 237854 237985 R identified by glimmer; putative; hypothetical protein complement(237854..237985) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044183.1 CDS SeHA_C0230 NC_011083.1 238036 238209 D identified by glimmer; putative; hypothetical protein 238036..238209 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044184.1 CDS SeHA_C0231 NC_011083.1 238397 238957 D identified by match to protein family HMM PF00419; fimbrial subunit 238397..238957 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044185.1 CDS SeHA_C0232 NC_011083.1 239043 241700 D identified by match to protein family HMM PF00577; fimbrial usher protein 239043..241700 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044186.1 CDS SeHA_C0233 NC_011083.1 241718 242470 D identified by match to protein family HMM PF00345; chaperone protein PapD 241718..242470 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044187.1 CDS SeHA_C0234 NC_011083.1 242489 243001 D minor fimbrial subunit 242489..243001 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044188.1 CDS SeHA_C0235 NC_011083.1 242998 243474 D identified by match to protein family HMM PF00419; fimbrial subunit 242998..243474 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044189.1 CDS SeHA_C0236 NC_011083.1 243474 244004 D identified by match to protein family HMM PF00419; minor fimbrial subunit StfG 243474..244004 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044190.1 CDS SeHA_C0237 NC_011083.1 243991 244125 D identified by glimmer; putative; hypothetical protein 243991..244125 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044191.2 CDS SeHA_C0238 NC_011083.1 244004 244849 D hypothetical protein 244004..244849 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044192.1 CDS hemL NC_011083.1 244947 246227 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(244947..246227) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044193.1 CDS SeHA_C0240 NC_011083.1 246397 247818 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 246397..247818 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044194.1 CDS yadR NC_011083.1 247900 248244 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 247900..248244 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044195.1 CDS SeHA_C0242 NC_011083.1 248345 248968 R identified by match to protein family HMM PF03458; hypothetical protein complement(248345..248968) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044196.1 CDS SeHA_C0243 NC_011083.1 249005 249793 R solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF complement(249005..249793) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044197.1 CDS mtnN NC_011083.1 249798 250496 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(249798..250496) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044198.1 CDS dgt NC_011083.1 250539 252098 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 250539..252098 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044199.1 CDS degP NC_011083.1 252228 253655 D protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 252228..253655 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044200.1 CDS SeHA_C0247 NC_011083.1 253808 254965 D 'regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization'; carbohydrate diacid transcriptional activator CdaR 253808..254965 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044201.1 CDS SeHA_C0248 NC_011083.1 255054 255440 R hypothetical protein complement(255054..255440) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044202.1 CDS SeHA_C0249 NC_011083.1 255687 256988 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; shikimate transporter 255687..256988 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044203.1 CDS dapD NC_011083.1 257024 257848 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(257024..257848) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044204.1 CDS glnD NC_011083.1 257878 260550 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(257878..260550) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044205.1 CDS map NC_011083.1 260788 261582 R 'catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn'; methionine aminopeptidase complement(260788..261582) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044206.1 CDS rpsB NC_011083.1 262033 262758 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 262033..262758 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044207.1 CDS tsf NC_011083.1 263016 263867 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 263016..263867 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044208.1 CDS pyrH NC_011083.1 264012 264737 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 264012..264737 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044209.1 CDS frr NC_011083.1 264884 265441 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 264884..265441 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044210.2 CDS dxr NC_011083.1 265583 266779 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 265583..266779 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044211.1 CDS uppS NC_011083.1 267092 267850 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 267092..267850 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044212.1 CDS cdsA NC_011083.1 267863 268720 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 267863..268720 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044213.1 CDS rseP NC_011083.1 268732 270084 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 268732..270084 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044214.1 CDS yaeT NC_011083.1 270116 272527 D 'part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins'; outer membrane protein assembly factor YaeT 270116..272527 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044215.1 CDS skp NC_011083.1 272650 273135 D identified by match to protein family HMM PF03938; periplasmic chaperone 272650..273135 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044216.1 CDS lpxD NC_011083.1 273139 274164 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 273139..274164 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044217.1 CDS fabZ NC_011083.1 274270 274725 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 274270..274725 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044218.1 CDS lpxA NC_011083.1 274729 275517 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 274729..275517 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044219.1 CDS lpxB NC_011083.1 275517 276665 D 'catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM'; lipid-A-disaccharide synthase 275517..276665 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044220.1 CDS rnhB NC_011083.1 276662 277258 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 276662..277258 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044221.1 CDS dnaE NC_011083.1 277282 280764 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 277282..280764 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044222.1 CDS accA NC_011083.1 280777 281736 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 280777..281736 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044223.1 CDS SeHA_C0271 NC_011083.1 281916 283679 D identified by match to protein family HMM PF00182; match to protein family HMM PF00801; endochitinase 281916..283679 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044224.1 CDS SeHA_C0272 NC_011083.1 283755 285896 D identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 283755..285896 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044225.1 CDS SeHA_C0273 NC_011083.1 285952 286341 D identified by match to protein family HMM PF00903; hypothetical protein 285952..286341 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044226.1 CDS tilS NC_011083.1 286404 287696 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 286404..287696 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044227.1 CDS rof NC_011083.1 287780 288040 R Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator complement(287780..288040) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044228.1 CDS SeHA_C0276 NC_011083.1 288027 288227 R identified by match to protein family HMM PF06786; hypothetical protein complement(288027..288227) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044229.1 CDS SeHA_C0277 NC_011083.1 288425 288970 D identified by match to protein family HMM PF07152; hypothetical protein 288425..288970 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044230.1 CDS SeHA_C0278 NC_011083.1 288967 289389 D identified by match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein 288967..289389 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044231.1 CDS SeHA_C0279 NC_011083.1 289421 290122 D identified by match to protein family HMM PF04170; copper homeostasis and adhesion lipoprotein 289421..290122 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044232.1 CDS proS NC_011083.1 290196 291914 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(290196..291914) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044233.1 CDS SeHA_C0281 NC_011083.1 292025 292765 R identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104; hypothetical protein complement(292025..292765) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044234.1 CDS rcsF NC_011083.1 292729 293133 R outer membrane lipoprotein complement(292729..293133) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044235.1 CDS metQ NC_011083.1 293252 294067 R identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; DL-methionine transporter substrate-binding subunit complement(293252..294067) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044236.1 CDS metI NC_011083.1 294106 294759 R part of the MetNIQ methionine uptake system; DL-methionine transporter permease complement(294106..294759) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044237.1 CDS metN NC_011083.1 294752 295783 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(294752..295783) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044238.1 CDS SeHA_C0286 NC_011083.1 295973 296539 D 'Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate'; D,D-heptose 1,7-bisphosphate phosphatase 295973..296539 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044239.1 CDS dkgB NC_011083.1 302815 303639 D 'catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid'; 2,5-diketo-D-gluconate reductase B 302815..303639 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044240.1 CDS SeHA_C0294 NC_011083.1 303660 304574 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein complement(303660..304574) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044241.1 CDS SeHA_C0295 NC_011083.1 304679 305854 D identified by match to protein family HMM PF07690; inner membrane transport protein YdhP 304679..305854 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044242.1 CDS SeHA_C0296 NC_011083.1 305986 306786 D identified by match to protein family HMM PF03372; hypothetical protein 305986..306786 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044243.1 CDS SeHA_C0297 NC_011083.1 306864 307634 D identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; UbiE/COQ5 family methyltransferase 306864..307634 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044244.2 CDS mltD NC_011083.1 307690 309057 R 'catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall'; membrane-bound lytic murein transglycosylase D complement(307690..309057) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044245.1 CDS gloB NC_011083.1 309129 309884 R catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase complement(309129..309884) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044246.1 CDS SeHA_C0300 NC_011083.1 309919 310641 D identified by match to protein family HMM PF08241; methyltransferase 309919..310641 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044247.1 CDS rnhA NC_011083.1 310638 311105 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(310638..311105) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044248.1 CDS dnaQ NC_011083.1 311160 311900 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 311160..311900 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044249.1 CDS SeHA_C0304 NC_011083.1 312432 313481 R identified by match to protein family HMM PF06812; ImpA-related N- family protein complement(312432..313481) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044250.1 CDS SeHA_C0305 NC_011083.1 313498 314493 R identified by match to protein family HMM PF06996; match to protein family HMM TIGR03347; type VI secretion protein, family complement(313498..314493) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044251.1 CDS vasA NC_011083.1 314490 316373 R identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359; type VI secretion protein, family complement(314490..316373) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044252.1 CDS SeHA_C0307 NC_011083.1 316389 316883 R identified by match to protein family HMM PF04965; match to protein family HMM TIGR03357; type VI secretion system lysozyme-like protein complement(316389..316883) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044253.1 CDS SeHA_C0308 NC_011083.1 316880 317704 R identified by match to protein family HMM PF07024; hypothetical protein complement(316880..317704) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044254.1 CDS SeHA_C0309 NC_011083.1 317691 318581 R hypothetical protein complement(317691..318581) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044255.1 CDS clpV NC_011083.1 318961 321600 D identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345; type VI secretion ATPase, ClpV1 family 318961..321600 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044256.1 CDS SeHA_C0311 NC_011083.1 321700 322242 D identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358; type VI secretion protein, family 321700..322242 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044257.1 CDS SeHA_C0312 NC_011083.1 322266 323774 D identified by match to protein family HMM PF05943; match to protein family HMM TIGR03355; type VI secretion protein, EvpB/family 322266..323774 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044258.1 CDS SeHA_C0313 NC_011083.1 324200 324625 D hypothetical protein 324200..324625 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044259.1 CDS SeHA_C0314 NC_011083.1 324862 325347 D identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hemolysin-coregulated protein 324862..325347 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044260.1 CDS SeHA_C0315 NC_011083.1 325650 326135 D hypothetical protein 325650..326135 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044261.1 CDS SeHA_C0316 NC_011083.1 326171 326503 D hypothetical protein 326171..326503 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044262.1 CDS SeHA_C0317 NC_011083.1 326646 327131 D identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hemolysin-coregulated protein 326646..327131 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044263.1 CDS SeHA_C0318 NC_011083.1 327244 327735 D identified by match to protein family HMM TIGR03352; type VI secretion lipoprotein, family 327244..327735 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044264.1 CDS SeHA_C0319 NC_011083.1 327739 329082 D identified by match to protein family HMM PF05936; match to protein family HMM TIGR03353; type VI secretion protein, family 327739..329082 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044265.1 CDS SeHA_C0320 NC_011083.1 329079 330383 D identified by match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350; hypothetical protein 329079..330383 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044266.1 CDS SeHA_C0321 NC_011083.1 330388 331161 D hypothetical protein 330388..331161 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044267.2 CDS SeHA_C0322 NC_011083.1 331352 331795 D shiga-like toxin A subunit 331352..331795 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044268.1 CDS icmF NC_011083.1 331829 335698 D identified by match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348; type VI secretion protein IcmF 331829..335698 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044269.1 CDS SeHA_C0324 NC_011083.1 335698 336465 D hypothetical protein 335698..336465 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044270.1 CDS SeHA_C0325 NC_011083.1 337068 337424 D hypothetical protein 337068..337424 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044271.1 CDS SeHA_C0326 NC_011083.1 337433 337555 D hypothetical protein 337433..337555 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044272.1 CDS SeHA_C0327 NC_011083.1 337582 337968 D hypothetical protein 337582..337968 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044273.1 CDS SeHA_C0328 NC_011083.1 337995 338513 D hypothetical protein 337995..338513 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044274.1 CDS SeHA_C0329 NC_011083.1 338910 341141 D identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361; Rhs family protein 338910..341141 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044275.1 CDS SeHA_C0330 NC_011083.1 341201 341659 D identified by match to protein family HMM PF08786; hypothetical protein 341201..341659 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044276.1 CDS SeHA_C0331 NC_011083.1 341675 346381 D identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643; Rhs family protein 341675..346381 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044277.1 CDS SeHA_C0332 NC_011083.1 346378 346812 D identified by glimmer; putative; hypothetical protein 346378..346812 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044278.1 CDS SeHA_C0333 NC_011083.1 346859 347122 R hypothetical protein complement(346859..347122) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044279.1 CDS SeHA_C0334 NC_011083.1 347184 347303 D identified by glimmer; putative; hypothetical protein 347184..347303 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044280.1 CDS SeHA_C0335 NC_011083.1 347793 348260 D identified by glimmer; putative; hypothetical protein 347793..348260 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044281.1 CDS SeHA_C0336 NC_011083.1 348325 348498 R hypothetical protein complement(348325..348498) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044282.1 CDS SeHA_C0338 NC_011083.1 350370 351080 D fimbrial protein 350370..351080 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044283.1 CDS SeHA_C0339 NC_011083.1 351131 351706 D identified by match to protein family HMM PF04449; fimbrial subunit 351131..351706 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044284.1 CDS SeHA_C0340 NC_011083.1 351815 354502 D hypothetical protein 351815..354502 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044285.1 CDS SeHA_C0341 NC_011083.1 354552 355604 D identified by match to protein family HMM PF07434; fimbrial protein 354552..355604 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044286.1 CDS SeHA_C0342 NC_011083.1 355737 356192 D identified by match to protein family HMM PF01037; transcriptional regulator 355737..356192 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044287.1 CDS SeHA_C0344 NC_011083.1 356236 356355 R identified by glimmer; putative; hypothetical protein complement(356236..356355) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044288.1 CDS SeHA_C0343 NC_011083.1 356332 356949 D hypothetical protein 356332..356949 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044289.1 CDS SeHA_C0345 NC_011083.1 357327 357485 D identified by glimmer; putative; hypothetical protein 357327..357485 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044290.1 CDS SeHA_C0346 NC_011083.1 357745 357915 D identified by glimmer; putative; hypothetical protein 357745..357915 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044291.1 CDS SeHA_C0347 NC_011083.1 357912 358631 R adhesin/invasin PagN complement(357912..358631) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044292.1 CDS SeHA_C0348 NC_011083.1 358962 359369 R identified by match to protein family HMM PF07813; hypothetical protein complement(358962..359369) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044293.1 CDS SeHA_C0349 NC_011083.1 359679 360446 R identified by match to protein family HMM PF00795; hypothetical protein complement(359679..360446) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083668.1 CDS fadE NC_011083.1 360555 362999 R acyl-coenzyme A dehydrogenase complement(360555..362999) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044294.1 CDS gmhA NC_011083.1 363239 363817 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 363239..363817 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044295.1 CDS SeHA_C0352 NC_011083.1 364030 364797 D identified by match to protein family HMM PF00310; glutamine amidotransferase, class II 364030..364797 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044296.1 CDS SeHA_C0353 NC_011083.1 364768 365508 R identified by match to protein family HMM PF06104; hypothetical protein complement(364768..365508) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044297.1 CDS SeHA_C0354 NC_011083.1 365758 366813 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 365758..366813 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044298.1 CDS SeHA_C0355 NC_011083.1 367032 368171 D mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein 367032..368171 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044299.1 CDS prfH NC_011083.1 368168 368782 D similar to release factor 1 and 2; peptide chain release factor-like protein 368168..368782 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044300.1 CDS pepD NC_011083.1 368937 370394 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase complement(368937..370394) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044301.1 CDS gpt NC_011083.1 370643 371101 D 'catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively'; xanthine-guanine phosphoribosyltransferase 370643..371101 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044302.1 CDS frsA NC_011083.1 371190 372434 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 371190..372434 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044303.1 CDS SeHA_C0360 NC_011083.1 372492 372893 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 372492..372893 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044304.1 CDS SeHA_C0361 NC_011083.1 372944 373996 R identified by match to protein family HMM PF00267; outer membrane phosphoporin protein E complement(372944..373996) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044305.1 CDS SeHA_C0362 NC_011083.1 374062 374214 R hypothetical protein complement(374062..374214) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044306.1 CDS proB NC_011083.1 374279 375382 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 374279..375382 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044307.1 CDS proA NC_011083.1 375394 376644 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 375394..376644 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044308.1 CDS SeHA_C0366 NC_011083.1 376850 378013 R identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family complement(376850..378013) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044309.1 CDS SeHA_C0367 NC_011083.1 378243 378545 R hypothetical protein complement(378243..378545) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044310.1 CDS SeHA_C0368 NC_011083.1 379255 379941 R identified by match to protein family HMM PF04447; match to protein family HMM PF04448; hypothetical protein complement(379255..379941) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044311.1 CDS SeHA_C0369 NC_011083.1 379952 380215 R hypothetical protein complement(379952..380215) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044312.1 CDS SeHA_C0370 NC_011083.1 380217 380702 R identified by match to protein family HMM PF04447; hypothetical protein complement(380217..380702) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044313.1 CDS SeHA_C0371 NC_011083.1 380699 381316 R hypothetical protein complement(380699..381316) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044314.1 CDS SeHA_C0372 NC_011083.1 381497 381793 R anti-RecBCD protein 2 complement(381497..381793) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044315.1 CDS SeHA_C0373 NC_011083.1 382124 382741 R identified by match to protein family HMM PF04404; recombination function protein complement(382124..382741) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044316.1 CDS SeHA_C0374 NC_011083.1 382738 382881 R hypothetical protein complement(382738..382881) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044317.1 CDS SeHA_C0375 NC_011083.1 382871 383059 R hypothetical protein complement(382871..383059) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044318.1 CDS SeHA_C0376 NC_011083.1 383040 383168 R identified by match to protein family HMM PF02061; lambda phage ciii complement(383040..383168) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044319.1 CDS SeHA_C0377 NC_011083.1 383284 383511 R superinfection exclusion protein complement(383284..383511) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044320.1 CDS SeHA_C0379 NC_011083.1 383946 384182 R hypothetical protein complement(383946..384182) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044321.1 CDS SeHA_C0380 NC_011083.1 384219 384371 R hypothetical protein complement(384219..384371) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044322.1 CDS SeHA_C0381 NC_011083.1 384655 385206 D superinfection exclusion protein B 384655..385206 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044323.1 CDS c2 NC_011083.1 385883 386533 R identified by match to protein family HMM PF00717; P22 repressor protein c2 complement(385883..386533) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044324.1 CDS SeHA_C0383 NC_011083.1 386906 387184 D identified by match to protein family HMM PF05269; transcriptional activator protein C1 386906..387184 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044325.1 CDS SeHA_C0384 NC_011083.1 387358 388173 D identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; DNA replication protein gp18 387358..388173 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044326.1 CDS SeHA_C0385 NC_011083.1 388170 389546 D identified by match to protein family HMM PF00772; match to protein family HMM PF03796; replicative DNA helicase 388170..389546 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044327.1 CDS SeHA_C0386 NC_011083.1 390373 390705 D hypothetical protein 390373..390705 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044328.1 CDS SeHA_C0387 NC_011083.1 390698 390874 D identified by match to protein family HMM PF05810; hypothetical protein 390698..390874 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044329.2 CDS SeHA_C0388 NC_011083.1 390867 391478 D hypothetical protein 390867..391478 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044330.1 CDS SeHA_C0389 NC_011083.1 391475 391699 D hypothetical protein 391475..391699 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044331.1 CDS SeHA_C0390 NC_011083.1 391696 391899 D identified by match to protein family HMM PF06322; hypothetical protein 391696..391899 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044332.1 CDS SeHA_C0391 NC_011083.1 391880 392059 D hypothetical protein 391880..392059 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044333.2 CDS SeHA_C0392 NC_011083.1 392056 392679 D antitermination protein Q 392056..392679 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044334.2 CDS SeHA_C0393 NC_011083.1 393118 393321 D hypothetical protein 393118..393321 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044335.1 CDS SeHA_C0394 NC_011083.1 393293 393796 D identified by match to protein family HMM PF00959; phage lysozyme 393293..393796 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044336.1 CDS SeHA_C0395 NC_011083.1 393885 394322 D identified by match to protein family HMM PF03245; bacteriophage lysis protein 393885..394322 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044337.1 CDS SeHA_C0396 NC_011083.1 394535 395221 D gp79 394535..395221 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044338.1 CDS SeHA_C0397 NC_011083.1 395524 395766 D hypothetical protein 395524..395766 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044339.1 CDS SeHA_C0398 NC_011083.1 395768 395947 D hypothetical protein 395768..395947 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044340.2 CDS SeHA_C0399 NC_011083.1 395971 396459 D hypothetical protein 395971..396459 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044341.1 CDS SeHA_C0400 NC_011083.1 396437 397936 D identified by match to protein family HMM PF03237; DNA packaging protein gp2 396437..397936 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044342.1 CDS SeHA_C0401 NC_011083.1 397936 400113 D portal protein 397936..400113 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044343.1 CDS SeHA_C0402 NC_011083.1 400127 401038 D identified by match to protein family HMM PF09306; scaffolding protein 400127..401038 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044344.1 CDS SeHA_C0403 NC_011083.1 401038 402330 D coat protein 401038..402330 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044345.1 CDS SeHA_C0404 NC_011083.1 402369 402578 D hypothetical protein 402369..402578 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044346.1 CDS SeHA_C0405 NC_011083.1 402562 403062 D packaged DNA stabilization protein gp4 402562..403062 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044347.1 CDS SeHA_C0406 NC_011083.1 403022 404440 D packaged DNA stabilization protein gp10 403022..404440 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044348.1 CDS SeHA_C0407 NC_011083.1 404444 405145 D head completion protein 404444..405145 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044349.1 CDS SeHA_C0408 NC_011083.1 405187 405600 D hypothetical protein 405187..405600 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044350.1 CDS SeHA_C0409 NC_011083.1 405603 406295 D DNA transfer protein gp7 405603..406295 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044351.1 CDS SeHA_C0410 NC_011083.1 406335 407600 D hypothetical protein 406335..407600 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044352.1 CDS SeHA_C0411 NC_011083.1 407600 409597 D hypothetical protein 407600..409597 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044353.2 CDS SeHA_C0412 NC_011083.1 410576 410830 R hypothetical protein complement(410576..410830) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044354.1 CDS SeHA_C0413 NC_011083.1 410966 412969 D identified by match to protein family HMM PF09008; match to protein family HMM PF09251; bifunctional tail protein 410966..412969 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044355.1 CDS SeHA_C0414 NC_011083.1 413028 414485 R O-antigen conversion protein complement(413028..414485) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044356.1 CDS SeHA_C0415 NC_011083.1 414475 415407 R identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase complement(414475..415407) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044357.1 CDS SeHA_C0416 NC_011083.1 415404 415766 R identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase complement(415404..415766) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044358.2 CDS SeHA_C0419 NC_011083.1 417889 418188 D hypothetical protein 417889..418188 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044359.2 CDS SeHA_C0420 NC_011083.1 418431 419768 D identified by match to protein family HMM PF07690; permease 418431..419768 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044360.1 CDS leuC NC_011083.1 419900 421321 D 'dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate'; isopropylmalate isomerase large subunit 419900..421321 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044361.1 CDS leuD NC_011083.1 421323 421949 D identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171; 3-isopropylmalate dehydratase, small subunit 421323..421949 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044362.1 CDS SeHA_C0423 NC_011083.1 421964 422842 D identified by match to protein family HMM PF01557; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 421964..422842 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044363.1 CDS SeHA_C0426 NC_011083.1 423789 424754 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 423789..424754 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044364.1 CDS SeHA_C0427 NC_011083.1 424852 424965 D identified by glimmer; putative; hypothetical protein 424852..424965 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044365.2 CDS SeHA_C0428 NC_011083.1 425663 426061 D hypothetical protein 425663..426061 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044366.1 CDS SeHA_C0429 NC_011083.1 426108 426866 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone protein complement(426108..426866) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044367.1 CDS SeHA_C0430 NC_011083.1 426832 428157 R identified by match to protein family HMM PF00419; fimbrial usher complement(426832..428157) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044368.1 CDS SeHA_C0431 NC_011083.1 428162 430723 R identified by match to protein family HMM PF00577; outer membrane fimbrial usher protein complement(428162..430723) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044369.1 CDS SeHA_C0432 NC_011083.1 430707 431510 R identified by match to protein family HMM PF00345; fimbrial chaperone protein complement(430707..431510) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044370.1 CDS SeHA_C0433 NC_011083.1 431530 432066 R identified by match to protein family HMM PF00419; fimbrial protein complement(431530..432066) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044371.1 CDS SeHA_C0434 NC_011083.1 432730 433464 D transmembrane regulator 432730..433464 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044372.1 CDS SeHA_C0436 NC_011083.1 434261 435811 D identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase 434261..435811 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044373.1 CDS SeHA_C0437 NC_011083.1 435911 436654 D identified by match to protein family HMM PF00486; response regulator 435911..436654 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044374.1 CDS SeHA_C0438 NC_011083.1 436627 437115 D hypothetical protein 436627..437115 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044375.1 CDS SeHA_C0439 NC_011083.1 437515 438039 D identified by match to protein family HMM PF06316; match to protein family HMM TIGR03304; attachment invasion locus protein 437515..438039 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044376.1 CDS SeHA_C0440 NC_011083.1 438183 438824 D response regulator 438183..438824 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044377.1 CDS SeHA_C0441 NC_011083.1 438880 439059 D hypothetical protein 438880..439059 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044378.1 CDS SeHA_C0442 NC_011083.1 439093 439476 D cytochrome c type biogenesis protein CycH 439093..439476 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044379.1 CDS oprA NC_011083.1 439546 441003 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux protein OprA complement(439546..441003) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044380.1 CDS SeHA_C0444 NC_011083.1 441020 444187 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; hypothetical protein complement(441020..444187) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044381.1 CDS SeHA_C0445 NC_011083.1 444184 445410 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; auxiliary transport protein membrane fusion protein (MFP) family complement(444184..445410) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044382.1 CDS SeHA_C0446 NC_011083.1 445554 445667 D identified by glimmer; putative; hypothetical protein 445554..445667 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044383.1 CDS SeHA_C0447 NC_011083.1 445687 447975 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 445687..447975 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044384.1 CDS cueR NC_011083.1 447987 448451 D identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02044; Cu(I)-responsive transcriptional regulator 447987..448451 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044385.1 CDS SeHA_C0449 NC_011083.1 448529 448723 D identified by match to protein family HMM PF00403; hypothetical protein 448529..448723 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044386.1 CDS SeHA_C0450 NC_011083.1 448767 448880 R hypothetical protein complement(448767..448880) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044387.1 CDS SeHA_C0451 NC_011083.1 449015 450268 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily transporter 449015..450268 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044388.1 CDS SeHA_C0452 NC_011083.1 450457 452415 D identified by match to protein family HMM PF01555; type III restriction-modification system StyLTI enzyme mod 450457..452415 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044389.1 CDS SeHA_C0453 NC_011083.1 452428 455397 D identified by match to protein family HMM PF04851; match to protein family HMM PF08774; type III restriction-modification system StyLTI enzyme res 452428..455397 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044390.1 CDS SeHA_C0454 NC_011083.1 455892 457295 D identified by match to protein family HMM PF01654; cytochrome bd-II oxidase subunit 1 455892..457295 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044391.1 CDS cydB NC_011083.1 457292 458302 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 457292..458302 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044392.1 CDS SeHA_C0456 NC_011083.1 458302 458433 D hypothetical protein 458302..458433 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044393.1 CDS SeHA_C0457 NC_011083.1 458640 459644 D identified by match to protein family HMM PF00165; araC family transcriptional regulator 458640..459644 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044394.1 CDS SeHA_C0458 NC_011083.1 459808 461898 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferrichrome-iron receptor 459808..461898 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044395.1 CDS SeHA_C0459 NC_011083.1 461939 462571 R identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; transport protein complement(461939..462571) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044396.1 CDS SeHA_C0460 NC_011083.1 462803 463078 D identified by match to protein family HMM PF07338; hypothetical protein 462803..463078 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044397.1 CDS prpR NC_011083.1 463214 464839 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR02329; propionate catabolism operon regulatory protein PrpR complement(463214..464839) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044398.1 CDS prpB NC_011083.1 465105 465992 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 465105..465992 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044399.1 CDS prpC NC_011083.1 466115 467284 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 466115..467284 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044400.1 CDS prpD NC_011083.1 467322 468773 D 'functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C'; 2-methylcitrate dehydratase 467322..468773 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044401.1 CDS prpE NC_011083.1 468814 470700 D 'catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent'; propionyl-CoA synthetase 468814..470700 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044402.1 CDS hemB NC_011083.1 470804 471778 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(470804..471778) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044403.1 CDS SeHA_C0467 NC_011083.1 471998 472117 D identified by glimmer; putative; hypothetical protein 471998..472117 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044404.1 CDS SeHA_C0468 NC_011083.1 472108 472224 R identified by glimmer; putative; hypothetical protein complement(472108..472224) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044405.2 CDS SeHA_C0469 NC_011083.1 472291 475236 D identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter/pertactin 472291..475236 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083669.1 CDS SeHA_C0470 NC_011083.1 475322 475945 D hypothetical protein 475322..475945 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044406.1 CDS SeHA_C0471 NC_011083.1 475990 477147 R this protein has no known enzymatic function; beta-lactam binding protein AmpH complement(475990..477147) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044407.1 CDS smbA NC_011083.1 477494 478714 D 'in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope'; transporter 477494..478714 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044408.1 CDS SeHA_C0473 NC_011083.1 478729 479823 D identified by match to protein family HMM PF07759; hypothetical protein 478729..479823 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044409.1 CDS SeHA_C0474 NC_011083.1 479861 480169 R hypothetical protein complement(479861..480169) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044410.1 CDS SeHA_C0475 NC_011083.1 480437 480652 D hypothetical protein 480437..480652 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044411.1 CDS ddl NC_011083.1 480678 481772 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(480678..481772) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044412.1 CDS SeHA_C0477 NC_011083.1 481880 482563 D identified by match to protein family HMM PF06904; extensin family protein 481880..482563 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044413.1 CDS SeHA_C0478 NC_011083.1 482732 483943 D identified by match to protein family HMM PF07690; major facilitator superfamily transporter 482732..483943 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044414.1 CDS SeHA_C0479 NC_011083.1 484240 484500 D hypothetical protein 484240..484500 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044415.1 CDS SeHA_C0480 NC_011083.1 484524 484685 R identified by glimmer; putative; hypothetical protein complement(484524..484685) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044416.1 CDS SeHA_C0481 NC_011083.1 484852 485172 D identified by match to protein family HMM PF07769; hypothetical protein 484852..485172 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044417.1 CDS adrA NC_011083.1 485264 486376 D 'catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis'; diguanylate cyclase AdrA 485264..486376 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044418.1 CDS proC NC_011083.1 486391 487200 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(486391..487200) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044419.1 CDS SeHA_C0484 NC_011083.1 487234 487383 D identified by glimmer; putative; hypothetical protein 487234..487383 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044420.1 CDS SeHA_C0485 NC_011083.1 487340 487795 D identified by match to protein family HMM PF02639; hypothetical protein 487340..487795 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044421.1 CDS aroL NC_011083.1 487980 488525 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 487980..488525 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044422.1 CDS SeHA_C0487 NC_011083.1 488552 488743 D hypothetical protein 488552..488743 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044423.1 CDS SeHA_C0488 NC_011083.1 488994 489671 D identified by match to protein family HMM PF07302; hypothetical protein 488994..489671 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044424.1 CDS SeHA_C0489 NC_011083.1 489742 490026 D identified by match to protein family HMM PF06865; hypothetical protein 489742..490026 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044425.1 CDS rdgC NC_011083.1 490064 490975 R Required for efficient pilin antigenic variation; recombination associated protein complement(490064..490975) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044426.1 CDS SeHA_C0491 NC_011083.1 491101 492009 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 491101..492009 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044427.1 CDS SeHA_C0492 NC_011083.1 492031 493203 R member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ complement(492031..493203) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044428.1 CDS SeHA_C0493 NC_011083.1 493376 496516 R with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease subunit SbcC complement(493376..496516) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044429.1 CDS SeHA_C0494 NC_011083.1 496513 497715 R 'with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity'; exonuclease subunit SbcD complement(496513..497715) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044430.1 CDS phoB NC_011083.1 497930 498619 D two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 497930..498619 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044431.1 CDS phoR NC_011083.1 498689 499984 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 498689..499984 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044432.1 CDS SeHA_C0498 NC_011083.1 500197 500346 R hypothetical protein complement(500197..500346) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044433.1 CDS brnQ NC_011083.1 500393 501712 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 500393..501712 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044434.1 CDS proY NC_011083.1 501727 503157 D 'cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation'; proline-specific permease 501727..503157 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044435.1 CDS SeHA_C0501 NC_011083.1 503319 505136 D identified by match to protein family HMM PF00128; maltodextrin glucosidase 503319..505136 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044436.1 CDS SeHA_C0502 NC_011083.1 505208 505810 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; peroxiredoxin-2 complement(505208..505810) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044437.1 CDS acpH NC_011083.1 506020 506601 R Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; acyl carrier protein phosphodiesterase complement(506020..506601) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044438.1 CDS queA NC_011083.1 506695 507759 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 506695..507759 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044439.1 CDS tgt NC_011083.1 507956 509083 D 'Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)'; queuine tRNA-ribosyltransferase 507956..509083 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044440.1 CDS yajC NC_011083.1 509106 509438 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 509106..509438 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044441.1 CDS secD NC_011083.1 509466 511313 D 'part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane'; preprotein translocase subunit SecD 509466..511313 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044442.1 CDS secF NC_011083.1 511324 512295 D 'forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF'; preprotein translocase subunit SecF 511324..512295 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044443.1 CDS SeHA_C0509 NC_011083.1 512440 512805 D identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase 512440..512805 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044444.1 CDS SeHA_C0510 NC_011083.1 512831 513523 D identified by match to protein family HMM PF08279; helix-turn-helix, type 11 512831..513523 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044445.1 CDS SeHA_C0511 NC_011083.1 513693 514040 D identified by match to protein family HMM PF01844; hypothetical protein 513693..514040 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044446.1 CDS SeHA_C0513 NC_011083.1 514669 515532 R identified by match to protein family HMM PF03502; nucleoside-specific channel-forming protein tsx complement(514669..515532) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044447.1 CDS SeHA_C0514 NC_011083.1 515720 515857 R identified by glimmer; putative; hypothetical protein complement(515720..515857) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044448.1 CDS SeHA_C0515 NC_011083.1 515832 516329 R hypothetical protein complement(515832..516329) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044449.1 CDS SeHA_C0516 NC_011083.1 516404 516550 D identified by glimmer; putative; hypothetical protein 516404..516550 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044450.1 CDS nrdR NC_011083.1 516523 516972 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 516523..516972 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044451.1 CDS ribD NC_011083.1 516976 518079 D 'riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil'; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 516976..518079 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044452.1 CDS ribH NC_011083.1 518168 518638 D identified by match to protein family HMM PF00885; match to protein family HMM TIGR00114; 6,7-dimethyl-8-ribityllumazine synthase 518168..518638 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044453.1 CDS nusB NC_011083.1 518659 519078 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 518659..519078 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044454.1 CDS thiL NC_011083.1 519157 520137 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 519157..520137 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044455.1 CDS pgpA NC_011083.1 520124 520630 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 520124..520630 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044456.1 CDS SeHA_C0523 NC_011083.1 520734 521708 R identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family complement(520734..521708) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044457.1 CDS dxs NC_011083.1 521765 523627 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(521765..523627) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044458.1 CDS ispA NC_011083.1 523651 524550 R identified by match to protein family HMM PF00348; geranyltranstransferase complement(523651..524550) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044459.1 CDS xseB NC_011083.1 524551 524793 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(524551..524793) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044460.1 CDS thiI NC_011083.1 525003 526451 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 525003..526451 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044461.1 CDS phnV NC_011083.1 526495 527292 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR03255; 2-aminoethylphosphonate ABC transporter membrane protein PhnV complement(526495..527292) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044462.1 CDS phnU NC_011083.1 527286 528155 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR03226; 2-aminoethylphosphonate ABC transporter permease complement(527286..528155) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044463.1 CDS phnT NC_011083.1 528158 529267 R identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR03258; 2-aminoethylphosphonate ABC transporter ATP-binding protein PhnT complement(528158..529267) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044464.1 CDS phnS NC_011083.1 529273 530286 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR03227; 2-aminoethylphosphonate ABC transporter substrate-binding protein complement(529273..530286) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044465.1 CDS SeHA_C0532 NC_011083.1 530484 531203 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR03337; transcriptional regulator complement(530484..531203) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044466.1 CDS phnW NC_011083.1 531343 532446 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 531343..532446 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044467.1 CDS phnX NC_011083.1 532456 533265 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 532456..533265 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044468.1 CDS SeHA_C0535 NC_011083.1 533362 533952 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 family protein complement(533362..533952) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044469.1 CDS panE NC_011083.1 533915 534826 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(533915..534826) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044470.1 CDS SeHA_C0537 NC_011083.1 534952 535443 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 534952..535443 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044471.1 CDS SeHA_C0538 NC_011083.1 535490 536854 R identified by match to protein family HMM PF07690; inner membrane transport protein YajR complement(535490..536854) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044472.1 CDS SeHA_C0539 NC_011083.1 537379 538890 D identified by match to protein family HMM PF08238; hypothetical protein 537379..538890 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044473.1 CDS SeHA_C0540 NC_011083.1 538902 540395 D identified by match to protein family HMM PF08238; hypothetical protein 538902..540395 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044474.1 CDS cyoE NC_011083.1 540477 541364 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(540477..541364) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044475.1 CDS cyoD NC_011083.1 541379 541708 R identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847; cytochrome o ubiquinol oxidase subunit IV complement(541379..541708) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044476.1 CDS cyoC NC_011083.1 541708 542322 R identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842; cytochrome o ubiquinol oxidase subunit III complement(541708..542322) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044477.1 CDS cyoB NC_011083.1 542312 544303 R identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843; cytochrome o ubiquinol oxidase subunit I complement(542312..544303) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044478.1 CDS cyoA NC_011083.1 544314 545243 R identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433; cytochrome o ubiquinol oxidase subunit II complement(544314..545243) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044479.1 CDS SeHA_C0546 NC_011083.1 545517 545639 R identified by glimmer; putative; hypothetical protein complement(545517..545639) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044480.1 CDS ampG NC_011083.1 545723 547198 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter complement(545723..547198) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083670.1 CDS SeHA_C0548 NC_011083.1 547242 547874 R hypothetical protein complement(547242..547874) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044481.1 CDS SeHA_C0549 NC_011083.1 548124 548441 D 'positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress'; transcriptional regulator BolA 548124..548441 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044482.1 CDS tig NC_011083.1 548788 550086 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 548788..550086 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044483.1 CDS clpP NC_011083.1 550332 550955 D 'hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates'; ATP-dependent Clp protease proteolytic subunit 550332..550955 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044484.1 CDS clpX NC_011083.1 551207 552478 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 551207..552478 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044485.1 CDS lon NC_011083.1 552664 555018 D identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; DNA-binding ATP-dependent protease La 552664..555018 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044486.1 CDS hupB NC_011083.1 555227 555499 D histone-like DNA-binding protein; transcriptional regulator HU subunit beta 555227..555499 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044487.1 CDS ppiD NC_011083.1 555790 557661 D identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase 555790..557661 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044488.1 CDS SeHA_C0556 NC_011083.1 557811 558185 D identified by match to protein family HMM TIGR00426; competence protein ComEA 557811..558185 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044489.1 CDS SeHA_C0557 NC_011083.1 558289 558687 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase superfamily protein 558289..558687 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044490.1 CDS SeHA_C0558 NC_011083.1 558793 559488 R 'YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His'; queuosine biosynthesis protein QueC complement(558793..559488) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044491.1 CDS SeHA_C0559 NC_011083.1 559553 561253 R identified by match to protein family HMM PF00496; extracellular solute-binding protein complement(559553..561253) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044492.1 CDS SeHA_C0560 NC_011083.1 561354 562172 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein 561354..562172 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044493.1 CDS SeHA_C0561 NC_011083.1 562222 563277 R identified by match to protein family HMM PF00291; pyridoxal-5'-phosphate-dependent enzyme subunit beta complement(562222..563277) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044494.1 CDS SeHA_C0562 NC_011083.1 563390 563848 D identified by match to protein family HMM PF01037; glutamate uptake regulatory protein 563390..563848 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044495.1 CDS SeHA_C0563 NC_011083.1 563889 565661 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding protein 563889..565661 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044496.1 CDS SeHA_C0564 NC_011083.1 565654 567435 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding protein 565654..567435 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044497.1 CDS SeHA_C0565 NC_011083.1 567648 567986 D 'indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.'; nitrogen regulatory protein P-II 2 567648..567986 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044498.1 CDS amt NC_011083.1 568018 569304 D identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 568018..569304 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044499.1 CDS tesB NC_011083.1 569404 570264 R identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189; acyl-CoA thioesterase II complement(569404..570264) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044500.1 CDS SeHA_C0568 NC_011083.1 570479 571048 D hypothetical protein 570479..571048 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044501.1 CDS SeHA_C0569 NC_011083.1 571081 571470 R identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase complement(571081..571470) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044502.1 CDS SeHA_C0571 NC_011083.1 571701 573251 R identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein complement(571701..573251) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044503.1 CDS rpmE2 NC_011083.1 573476 573736 D 'RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome'; 50S ribosomal protein L31 573476..573736 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044504.1 CDS rpmJ NC_011083.1 573742 573882 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 573742..573882 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044505.1 CDS SeHA_C0574 NC_011083.1 573938 574408 R hypothetical protein complement(573938..574408) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044506.1 CDS SeHA_C0575 NC_011083.1 574525 575076 R identified by match to protein family HMM PF00132; maltose O-acetyltransferase complement(574525..575076) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044507.1 CDS SeHA_C0576 NC_011083.1 575255 575473 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein complement(575255..575473) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044508.1 CDS SeHA_C0577 NC_011083.1 575501 575875 R hypothetical protein complement(575501..575875) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044509.1 CDS SeHA_C0578 NC_011083.1 576371 579520 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; acriflavine resistance protein B complement(576371..579520) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044510.1 CDS acrA NC_011083.1 579543 580736 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein A complement(579543..580736) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044511.1 CDS acrR NC_011083.1 580878 581531 D regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 580878..581531 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044512.1 CDS SeHA_C0581 NC_011083.1 581656 585012 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 581656..585012 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044513.1 CDS SeHA_C0584 NC_011083.1 586184 586351 R hypothetical protein complement(586184..586351) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044514.1 CDS SeHA_C0585 NC_011083.1 586365 586880 R 'PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks'; primosomal replication protein N'' complement(586365..586880) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044515.1 CDS SeHA_C0586 NC_011083.1 586961 587338 D identified by match to protein family HMM PF04304; hypothetical protein 586961..587338 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044516.1 CDS apt NC_011083.1 587491 588042 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 587491..588042 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044517.1 CDS dnaX NC_011083.1 588156 590084 D 'catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA'; DNA polymerase III subunits gamma and tau 588156..590084 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044518.1 CDS SeHA_C0590 NC_011083.1 590130 590459 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 590130..590459 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044519.1 CDS recR NC_011083.1 590459 591064 D 'involved in a recombinational process of DNA repair, independent of the recBC complex'; recombination protein RecR 590459..591064 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044520.1 CDS htpG NC_011083.1 591175 593049 D molecular chaperone; heat shock protein 90 591175..593049 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044521.1 CDS adk NC_011083.1 593290 593934 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 593290..593934 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044522.1 CDS SeHA_C0594 NC_011083.1 594013 594153 D hypothetical protein 594013..594153 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044523.1 CDS hemH NC_011083.1 594163 595125 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 594163..595125 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044524.1 CDS gsk NC_011083.1 596245 597549 D identified by match to protein family HMM PF00294; inosine kinase 596245..597549 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044525.1 CDS SeHA_C0599 NC_011083.1 597598 599274 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; cation:proton antiport protein complement(597598..599274) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044526.1 CDS fsr NC_011083.1 599489 600709 R identified by match to protein family HMM PF07690; fosmidomycin resistance protein complement(599489..600709) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044527.1 CDS ushA NC_011083.1 600882 602534 D 'catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides'; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 600882..602534 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044528.1 CDS ybaK NC_011083.1 602651 603130 R identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; hypothetical protein complement(602651..603130) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044529.1 CDS SeHA_C0604 NC_011083.1 603332 604126 R identified by match to protein family HMM PF07446; GumN family protein complement(603332..604126) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044530.1 CDS SeHA_C0605 NC_011083.1 604212 605039 R hypothetical protein complement(604212..605039) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044531.1 CDS copA NC_011083.1 605193 607694 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper exporting ATPase complement(605193..607694) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044532.1 CDS cueR NC_011083.1 607804 608220 D activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 607804..608220 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044533.1 CDS SeHA_C0608 NC_011083.1 608221 608673 R identified by match to protein family HMM PF01957; hypothetical protein complement(608221..608673) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044534.1 CDS SeHA_C0609 NC_011083.1 608670 609587 R identified by match to protein family HMM PF01145; hypothetical protein complement(608670..609587) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044535.1 CDS SeHA_C0610 NC_011083.1 609734 610411 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein YbbL 609734..610411 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044536.1 CDS SeHA_C0611 NC_011083.1 610398 611177 D identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 610398..611177 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044537.1 CDS SeHA_C0612 NC_011083.1 611263 612144 R identified by match to protein family HMM PF00085; thioredoxin domain-containing protein complement(611263..612144) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044538.1 CDS SeHA_C0613 NC_011083.1 612177 612947 R identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase complement(612177..612947) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044539.1 CDS SeHA_C0615 NC_011083.1 613102 613716 R identified by match to protein family HMM PF00657; multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 complement(613102..613716) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044540.1 CDS SeHA_C0614 NC_011083.1 613687 614373 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein YbbA 613687..614373 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044541.1 CDS SeHA_C0616 NC_011083.1 614370 616784 D identified by match to protein family HMM PF02687; efflux ABC transporter permease 614370..616784 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044542.1 CDS SeHA_C0617 NC_011083.1 616970 618103 D outer membrane protein 616970..618103 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044543.1 CDS SeHA_C0618 NC_011083.1 618360 619190 D identified by match to protein family HMM PF03180; lipoprotein 618360..619190 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044544.1 CDS SeHA_C0619 NC_011083.1 619227 620243 D identified by match to protein family HMM PF00005; match to protein family HMM PF09383; methionine import ATP-binding protein MetN 2 619227..620243 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044545.1 CDS SeHA_C0620 NC_011083.1 620236 620895 D identified by match to protein family HMM PF00528; ABC transporter 620236..620895 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044546.1 CDS ybbB NC_011083.1 620934 622028 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(620934..622028) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044547.1 CDS SeHA_C0622 NC_011083.1 622098 623024 R activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS complement(622098..623024) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044548.1 CDS allA NC_011083.1 623251 623733 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 623251..623733 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044549.1 CDS allR NC_011083.1 623812 624630 D regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 623812..624630 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044550.1 CDS gcl NC_011083.1 624715 626496 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 624715..626496 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044551.1 CDS hyi NC_011083.1 626509 627285 D identified by match to protein family HMM PF01261; match to protein family HMM TIGR03234; hydroxypyruvate isomerase 626509..627285 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044552.1 CDS SeHA_C0627 NC_011083.1 627386 628264 D identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505; 2-hydroxy-3-oxopropionate reductase 627386..628264 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044553.1 CDS SeHA_C0628 NC_011083.1 628330 629577 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter protein 628330..629577 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044554.1 CDS ncs1 NC_011083.1 629673 631127 D identified by match to protein family HMM PF02133; match to protein family HMM TIGR00800; allantoin permease 629673..631127 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044555.1 CDS allB NC_011083.1 631206 632567 D Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 631206..632567 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044556.1 CDS SeHA_C0631 NC_011083.1 632626 633924 D identified by match to protein family HMM PF00860; purine permease YbbY 632626..633924 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044557.1 CDS SeHA_C0632 NC_011083.1 633947 635095 D identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 633947..635095 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044558.1 CDS SeHA_C0633 NC_011083.1 635175 635960 R identified by match to protein family HMM PF05899; match to protein family HMM PF07883; match to protein family HMM TIGR03214; hypothetical protein complement(635175..635960) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044559.1 CDS allC NC_011083.1 635971 637206 R 'allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide'; allantoate amidohydrolase complement(635971..637206) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044560.1 CDS allD NC_011083.1 637228 638277 R identified by match to protein family HMM PF02615; match to protein family HMM TIGR03175; ureidoglycolate dehydrogenase complement(637228..638277) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044561.1 CDS SeHA_C0636 NC_011083.1 638465 638596 D identified by glimmer; putative; hypothetical protein 638465..638596 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044562.1 CDS SeHA_C0637 NC_011083.1 638593 640257 D multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 638593..640257 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044563.1 CDS SeHA_C0638 NC_011083.1 640267 641526 D identified by match to protein family HMM PF06545; hypothetical protein 640267..641526 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044564.1 CDS SeHA_C0639 NC_011083.1 641559 642347 D hypothetical protein 641559..642347 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044565.1 CDS arcC NC_011083.1 642351 643244 D identified by match to protein family HMM PF00696; match to protein family HMM TIGR00746; carbamate kinase 642351..643244 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044566.1 CDS purK NC_011083.1 643285 644352 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(643285..644352) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044567.1 CDS purE NC_011083.1 644349 644858 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(644349..644858) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044568.1 CDS lpxH NC_011083.1 644976 645698 R 'catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine'; UDP-2,3-diacylglucosamine hydrolase complement(644976..645698) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044569.1 CDS ppiB NC_011083.1 645701 646195 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B complement(645701..646195) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044570.1 CDS cysS NC_011083.1 646368 647753 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 646368..647753 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044571.1 CDS SeHA_C0646 NC_011083.1 647798 648622 R hypothetical protein complement(647798..648622) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044572.1 CDS SeHA_C0647 NC_011083.1 648619 649056 R hypothetical protein complement(648619..649056) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044573.1 CDS SeHA_C0648 NC_011083.1 649049 649594 R identified by match to protein family HMM PF04307; hypothetical protein complement(649049..649594) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044574.1 CDS SeHA_C0649 NC_011083.1 649721 649933 R hypothetical protein complement(649721..649933) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044575.1 CDS folD NC_011083.1 649935 650801 R 'catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate'; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(649935..650801) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044576.1 CDS SeHA_C0651 NC_011083.1 650939 651094 D identified by glimmer; putative; hypothetical protein 650939..651094 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044577.1 CDS SeHA_C0652 NC_011083.1 651246 652226 R identified by match to protein family HMM PF01609; IS5 transposase complement(651246..652226) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044578.1 CDS SeHA_C0653 NC_011083.1 652547 653104 D identified by match to protein family HMM PF00419; type-1 fimbrial protein subunit A 652547..653104 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044579.1 CDS SeHA_C0654 NC_011083.1 653218 653712 D identified by match to protein family HMM PF00419; fimbrial protein 653218..653712 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044580.1 CDS SeHA_C0655 NC_011083.1 653735 654448 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 653735..654448 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044581.1 CDS SeHA_C0656 NC_011083.1 654479 657091 D identified by match to protein family HMM PF00577; outer membrane usher protein SfmD 654479..657091 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044582.1 CDS SeHA_C0657 NC_011083.1 657106 658113 D mannose binding protein FimH 657106..658113 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044583.1 CDS SeHA_C0658 NC_011083.1 658123 658641 D identified by match to protein family HMM PF00419; fimbrial protein 658123..658641 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044584.1 CDS SeHA_C0659 NC_011083.1 658687 659319 R activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ complement(658687..659319) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044585.1 CDS SeHA_C0660 NC_011083.1 659923 660645 R fimbriae Y protein complement(659923..660645) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044586.1 CDS SeHA_C0661 NC_011083.1 660606 660758 R identified by glimmer; putative; hypothetical protein complement(660606..660758) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044587.1 CDS SeHA_C0663 NC_011083.1 661137 661733 R fimbriae W protein complement(661137..661733) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044588.1 CDS SeHA_C0662 NC_011083.1 661689 661925 D hypothetical protein 661689..661925 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044589.1 CDS SeHA_C0666 NC_011083.1 663019 663177 D identified by glimmer; putative; hypothetical protein 663019..663177 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044590.1 CDS SeHA_C0667 NC_011083.1 663234 664874 R hypothetical protein complement(663234..664874) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044591.1 CDS SeHA_C0668 NC_011083.1 664867 665793 R identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase complement(664867..665793) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044592.1 CDS SeHA_C0669 NC_011083.1 665790 666152 R identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase complement(665790..666152) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044593.1 CDS SeHA_C0673 NC_011083.1 667449 667637 D cation efflux system protein CusA 667449..667637 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044594.1 CDS SeHA_C0674 NC_011083.1 667688 668542 R identified by match to protein family HMM PF00165; araC family transcriptional regulator complement(667688..668542) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044595.1 CDS SeHA_C0675 NC_011083.1 668758 670083 D Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 668758..670083 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044596.1 CDS SeHA_C0676 NC_011083.1 670240 670476 D identified by match to protein family HMM PF07338; hypothetical protein 670240..670476 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044597.1 CDS SeHA_C0677 NC_011083.1 670489 671049 D identified by match to protein family HMM PF04224; hypothetical protein 670489..671049 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044598.1 CDS SeHA_C0678 NC_011083.1 671128 672303 R heat shock protein DnaJ domain-containing protein complement(671128..672303) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044599.1 CDS SeHA_C0679 NC_011083.1 672629 674023 D identified by match to protein family HMM PF00324; phenylalanine transporter 672629..674023 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044600.1 CDS SeHA_C0680 NC_011083.1 674065 675312 R identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel family transporter complement(674065..675312) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044601.1 CDS SeHA_C0681 NC_011083.1 675342 675524 D hypothetical protein 675342..675524 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044602.1 CDS SeHA_C0682 NC_011083.1 675623 677593 D identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414; lipase 1 675623..677593 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044603.2 CDS SeHA_C0683 NC_011083.1 677760 680489 D identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF07728; AAA ATPase 677760..680489 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044604.1 CDS SeHA_C0684 NC_011083.1 680617 681603 R identified by match to protein family HMM PF01380; sugar isomerase complement(680617..681603) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044605.1 CDS SeHA_C0685 NC_011083.1 681670 682731 R identified by match to protein family HMM PF01380; sugar isomerase complement(681670..682731) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044606.1 CDS SeHA_C0686 NC_011083.1 682746 683600 R identified by match to protein family HMM PF03613; PTS system mannose-specific transporter subunit IID complement(682746..683600) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044607.1 CDS SeHA_C0687 NC_011083.1 683603 684346 R identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC complement(683603..684346) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044608.1 CDS SeHA_C0688 NC_011083.1 684361 684831 R identified by match to protein family HMM PF03830; PTS system sorbose subfamily transporter subunit IIB complement(684361..684831) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044609.1 CDS SeHA_C0689 NC_011083.1 684809 685258 R identified by match to protein family HMM PF03610; PTS system mannose-specific transporter subunit IIAB complement(684809..685258) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044610.1 CDS SeHA_C0690 NC_011083.1 685458 686111 R 'catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive'; dihydropteridine reductase complement(685458..686111) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044611.1 CDS SeHA_C0691 NC_011083.1 686208 686576 R identified by match to protein family HMM PF04237; hypothetical protein complement(686208..686576) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044612.1 CDS SeHA_C0692 NC_011083.1 686576 687157 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(686576..687157) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044613.1 CDS SeHA_C0693 NC_011083.1 687446 687787 D identified by match to protein family HMM PF00165; transposon Tn10 TetD protein 687446..687787 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044614.1 CDS SeHA_C0694 NC_011083.1 687793 688017 R hypothetical protein complement(687793..688017) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044615.1 CDS SeHA_C0695 NC_011083.1 688108 689226 R ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase complement(688108..689226) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044616.1 CDS SeHA_C0696 NC_011083.1 689238 689945 R identified by match to protein family HMM PF01648; enterobactin synthase multienzyme complex phosphopantetheinyltransferase complement(689238..689945) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044617.1 CDS SeHA_C0697 NC_011083.1 689988 692243 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(689988..692243) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044618.1 CDS SeHA_C0698 NC_011083.1 692432 693646 D identified by match to protein family HMM PF00756; enterobactin/ferric enterobactin esterase 692432..693646 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044619.1 CDS SeHA_C0699 NC_011083.1 693677 693895 D identified by match to protein family HMM PF03621; hypothetical protein 693677..693895 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044620.1 CDS entF NC_011083.1 693892 697776 D 'with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin'; enterobactin synthase subunit F 693892..697776 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044621.1 CDS SeHA_C0701 NC_011083.1 698026 699162 D part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 698026..699162 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044622.1 CDS SeHA_C0702 NC_011083.1 699215 700009 R with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein complement(699215..700009) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044623.1 CDS SeHA_C0703 NC_011083.1 700006 700995 R with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease complement(700006..700995) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044624.1 CDS SeHA_C0704 NC_011083.1 700995 702002 R with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein complement(700995..702002) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044625.1 CDS SeHA_C0705 NC_011083.1 702113 703357 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 702113..703357 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044626.1 CDS SeHA_C0706 NC_011083.1 703420 704376 R with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein complement(703420..704376) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044627.1 CDS SeHA_C0707 NC_011083.1 704685 705860 D identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase EntC 704685..705860 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044628.1 CDS entE NC_011083.1 705870 707480 D 'bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate'; enterobactin synthase subunit E 705870..707480 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044629.1 CDS entB NC_011083.1 707494 708351 D identified by match to protein family HMM PF00550; match to protein family HMM PF00857; isochorismatase 707494..708351 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044630.1 CDS entA NC_011083.1 708351 709106 D 'catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin'; 2,3-dihydroxybenzoate-2,3-dehydrogenase 708351..709106 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044631.1 CDS SeHA_C0711 NC_011083.1 709109 709522 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 709109..709522 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044632.1 CDS cstA NC_011083.1 709704 711809 D identified by match to protein family HMM PF02554; carbon starvation protein A 709704..711809 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044633.1 CDS SeHA_C0713 NC_011083.1 711873 712070 D identified by match to protein family HMM PF04328; hypothetical protein 711873..712070 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044634.1 CDS SeHA_C0714 NC_011083.1 712106 713194 R member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein complement(712106..713194) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044635.1 CDS SeHA_C0715 NC_011083.1 713321 714481 D catalyzes the transfer of an amino moiety; aminotransferase 713321..714481 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044636.1 CDS SeHA_C0716 NC_011083.1 714482 715099 R identified by match to protein family HMM PF02195; hypothetical protein complement(714482..715099) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044637.1 CDS SeHA_C0717 NC_011083.1 715072 716307 R identified by match to protein family HMM PF01507; bifunctional 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase/FAD synthetase complement(715072..716307) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044638.1 CDS SeHA_C0718 NC_011083.1 716473 717375 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(716473..717375) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044639.2 CDS dsbG NC_011083.1 717692 718438 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(717692..718438) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044640.1 CDS ahpC NC_011083.1 718879 719442 D with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C 718879..719442 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083671.1 CDS ahpF NC_011083.1 719684 721249 D alkyl hydroperoxide reductase subunit F 719684..721249 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044641.1 CDS SeHA_C0722 NC_011083.1 721582 722142 D identified by match to protein family HMM PF06192; anaerobic dehydrogenase subunit 721582..722142 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044642.1 CDS SeHA_C0723 NC_011083.1 722135 724414 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; molybdopterin-containing oxidoreductase catalytic subunit 722135..724414 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044643.1 CDS SeHA_C0724 NC_011083.1 724411 724968 D identified by match to protein family HMM PF00037; molybdopterin-containing oxidoreductase iron-sulfur subunit 724411..724968 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044644.1 CDS SeHA_C0725 NC_011083.1 724968 725735 D molybdopterin-containing oxidoreductase membrane anchor subunit 724968..725735 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044645.2 CDS SeHA_C0726 NC_011083.1 725803 726231 R universal stress protein G complement(725803..726231) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044646.1 CDS SeHA_C0728 NC_011083.1 726454 727692 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; S-(hydroxymethyl)glutathione dehydrogenase (glutathione-dependent formaldehyde dehydrogenase) (fdh) (faldh) 726454..727692 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044647.1 CDS SeHA_C0729 NC_011083.1 727773 728183 R 'Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation'; nucleoside diphosphate kinase regulator complement(727773..728183) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044648.1 CDS SeHA_C0730 NC_011083.1 728418 729224 R ribonuclease I complement(728418..729224) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044649.1 CDS SeHA_C0731 NC_011083.1 729334 730797 R identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; sodium:sulfate symporter family protein complement(729334..730797) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044650.1 CDS citG NC_011083.1 730835 731728 R catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase complement(730835..731728) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044651.1 CDS citX NC_011083.1 731703 732254 R 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase complement(731703..732254) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044652.1 CDS citF NC_011083.1 732258 733787 R identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha complement(732258..733787) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044653.1 CDS citE NC_011083.1 733797 734705 R identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta complement(733797..734705) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044654.1 CDS citD NC_011083.1 734702 734998 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(734702..734998) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044655.1 CDS citC NC_011083.1 734995 736071 R identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase complement(734995..736071) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044656.1 CDS SeHA_C0738 NC_011083.1 736137 736274 D identified by glimmer; putative; hypothetical protein 736137..736274 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044657.1 CDS SeHA_C0739 NC_011083.1 736331 736444 R identified by glimmer; putative; hypothetical protein complement(736331..736444) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044658.1 CDS SeHA_C0740 NC_011083.1 736456 738117 D identified by match to protein family HMM PF02518; sensor kinase DpiB 736456..738117 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044659.1 CDS dpiA NC_011083.1 738086 738766 D regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 738086..738766 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044660.1 CDS dcuC NC_011083.1 738820 740250 R responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC complement(738820..740250) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044661.1 CDS pagP NC_011083.1 740596 741156 D catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 740596..741156 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044662.1 CDS cspE NC_011083.1 741344 741553 D member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 741344..741553 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044663.1 CDS crcB NC_011083.1 741611 741994 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(741611..741994) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044664.1 CDS SeHA_C0746 NC_011083.1 742085 742873 D identified by match to protein family HMM PF00795; hydrolase YbeM 742085..742873 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044665.1 CDS tatE NC_011083.1 743002 743205 D TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein E 743002..743205 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044666.1 CDS lipA NC_011083.1 743291 744256 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(743291..744256) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044667.1 CDS SeHA_C0749 NC_011083.1 744297 744431 R identified by glimmer; putative; hypothetical protein complement(744297..744431) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044668.1 CDS SeHA_C0750 NC_011083.1 744462 745415 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator complement(744462..745415) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044669.1 CDS lipB NC_011083.1 745717 746358 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(745717..746358) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044670.1 CDS SeHA_C0752 NC_011083.1 746458 746721 R identified by match to protein family HMM PF04359; hypothetical protein complement(746458..746721) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044671.1 CDS dacA NC_011083.1 746829 748040 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase complement(746829..748040) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044672.1 CDS SeHA_C0754 NC_011083.1 748180 749313 R identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A complement(748180..749313) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044673.1 CDS mrdB NC_011083.1 749324 750436 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; cell wall shape-determining protein complement(749324..750436) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044674.1 CDS mrdA NC_011083.1 750439 752340 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 complement(750439..752340) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044675.1 CDS SeHA_C0757 NC_011083.1 752371 752838 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(752371..752838) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044676.1 CDS SeHA_C0758 NC_011083.1 752842 753159 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein complement(752842..753159) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044677.1 CDS cobC NC_011083.1 753488 754096 R identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162; alpha-ribazole phosphatase complement(753488..754096) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044678.1 CDS cobD NC_011083.1 754193 755287 D 'cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase'; threonine-phosphate decarboxylase 754193..755287 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044679.1 CDS nadD NC_011083.1 755262 755912 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(755262..755912) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044680.1 CDS holA NC_011083.1 755905 756936 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(755905..756936) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044681.1 CDS SeHA_C0763 NC_011083.1 756936 757526 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB complement(756936..757526) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044682.1 CDS leuS NC_011083.1 757541 760123 R 'leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase'; leucyl-tRNA synthetase complement(757541..760123) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044683.1 CDS SeHA_C0765 NC_011083.1 760250 760366 R identified by glimmer; putative; hypothetical protein complement(760250..760366) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044684.1 CDS SeHA_C0766 NC_011083.1 760411 760701 D identified by match to protein family HMM PF08666; UxaA family hydrolase 760411..760701 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044685.1 CDS SeHA_C0767 NC_011083.1 760724 761890 D identified by match to protein family HMM PF04295; UxaA family hydrolase 760724..761890 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044686.1 CDS SeHA_C0768 NC_011083.1 761940 762893 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 761940..762893 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044687.1 CDS SeHA_C0769 NC_011083.1 762961 764889 D identified by match to protein family HMM PF00158; match to protein family HMM PF06506; sigma-54 dependent transcriptional regulator 762961..764889 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044688.1 CDS SeHA_C0770 NC_011083.1 764982 765455 D identified by match to protein family HMM PF07295; hypothetical protein 764982..765455 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044689.1 CDS SeHA_C0771 NC_011083.1 765494 766489 R identified by match to protein family HMM PF08238; hypothetical protein complement(765494..766489) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044690.1 CDS SeHA_C0772 NC_011083.1 766707 767321 D identified by match to protein family HMM PF06889; hypothetical protein 766707..767321 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044691.1 CDS SeHA_C0773 NC_011083.1 767318 768751 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 767318..768751 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044692.1 CDS SeHA_C0774 NC_011083.1 768763 769458 D identified by match to protein family HMM PF06889; hypothetical protein 768763..769458 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044693.1 CDS SeHA_C0775 NC_011083.1 769455 770927 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 769455..770927 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044694.1 CDS SeHA_C0776 NC_011083.1 770949 772628 R identified by match to protein family HMM PF00012; chaperone protein HscC complement(770949..772628) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044695.1 CDS SeHA_C0777 NC_011083.1 772704 773942 R hypothetical protein complement(772704..773942) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044696.1 CDS rihA NC_011083.1 773974 774909 R 'Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific'; ribonucleoside hydrolase 1 complement(773974..774909) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044697.1 CDS gltL NC_011083.1 775026 775751 R identified by match to protein family HMM PF00005; glutamate/aspartate ABC transporter ATP-binding protein complement(775026..775751) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044698.1 CDS gltK NC_011083.1 775751 776425 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltK complement(775751..776425) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044699.1 CDS gltJ NC_011083.1 776425 777165 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltJ complement(776425..777165) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044700.1 CDS gltI NC_011083.1 777325 778233 R identified by match to protein family HMM PF00497; glutamate and aspartate transporter subunit complement(777325..778233) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044701.1 CDS lnt NC_011083.1 778588 780177 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(778588..780177) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044702.1 CDS corC NC_011083.1 780146 781024 R identified by match to protein family HMM PF00571; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC complement(780146..781024) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044703.1 CDS SeHA_C0786 NC_011083.1 781182 781655 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease complement(781182..781655) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044704.1 CDS SeHA_C0787 NC_011083.1 781652 782698 R identified by match to protein family HMM PF02562; PhoH family protein complement(781652..782698) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044705.1 CDS miaB NC_011083.1 782903 784327 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(782903..784327) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044706.1 CDS ubiF NC_011083.1 784471 785646 D 'catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q'; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 784471..785646 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044707.1 CDS SeHA_C0790 NC_011083.1 785713 786288 R hypothetical protein complement(785713..786288) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044708.1 CDS SeHA_C0797 NC_011083.1 787103 787243 D identified by glimmer; putative; hypothetical protein 787103..787243 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044709.1 CDS asnB NC_011083.1 787354 789018 R 'functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP'; asparagine synthetase B complement(787354..789018) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044710.1 CDS SeHA_C0800 NC_011083.1 789308 790060 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; UMP phosphatase complement(789308..790060) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044711.1 CDS nagC NC_011083.1 790107 791327 R identified by match to protein family HMM PF00480; N-acetylglucosamine repressor complement(790107..791327) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044712.1 CDS nagA NC_011083.1 791332 792486 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(791332..792486) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044713.1 CDS nagB NC_011083.1 792546 793346 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(792546..793346) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044714.1 CDS nagE NC_011083.1 793673 795625 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunit IIABC 793673..795625 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044715.1 CDS glnS NC_011083.1 795836 797503 D 'catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; glutaminyl-tRNA synthetase 795836..797503 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044716.1 CDS SeHA_C0806 NC_011083.1 797539 797652 D identified by glimmer; putative; hypothetical protein 797539..797652 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044717.1 CDS SeHA_C0807 NC_011083.1 797955 799361 D identified by match to protein family HMM PF03573; OprD family outer membrane porin 797955..799361 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044718.1 CDS SeHA_C0808 NC_011083.1 799411 799743 D hypothetical protein 799411..799743 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044719.1 CDS SeHA_C0809 NC_011083.1 799792 801096 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; citrate-proton symporter complement(799792..801096) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044720.1 CDS SeHA_C0810 NC_011083.1 801147 802286 R identified by match to protein family HMM TIGR02484; citrate utilization protein B complement(801147..802286) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044721.1 CDS cobZ NC_011083.1 802273 803676 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(802273..803676) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044722.1 CDS SeHA_C0812 NC_011083.1 803774 804700 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(803774..804700) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044723.1 CDS fur NC_011083.1 804815 805267 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(804815..805267) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044724.1 CDS fldA NC_011083.1 805549 806079 R 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin FldA complement(805549..806079) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044725.1 CDS SeHA_C0816 NC_011083.1 806230 806523 R identified by match to protein family HMM PF01402; LexA regulated protein complement(806230..806523) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044726.1 CDS SeHA_C0815 NC_011083.1 806522 806644 D identified by glimmer; putative; hypothetical protein 806522..806644 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044727.1 CDS ybfF NC_011083.1 806657 807427 R identified by match to protein family HMM PF00561; match to protein family HMM PF07819; hypothetical protein complement(806657..807427) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044728.1 CDS seqA NC_011083.1 807612 808154 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 807612..808154 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044729.1 CDS pgm NC_011083.1 808179 809819 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 808179..809819 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044730.1 CDS SeHA_C0820 NC_011083.1 809934 810437 R hypothetical protein complement(809934..810437) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044731.1 CDS potE NC_011083.1 810484 811803 R 'catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system'; putrescine transporter complement(810484..811803) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044732.1 CDS SeHA_C0822 NC_011083.1 811800 813998 R identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase complement(811800..813998) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044733.1 CDS SeHA_C0823 NC_011083.1 814396 814509 D hypothetical protein 814396..814509 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044734.1 CDS SeHA_C0824 NC_011083.1 814760 815437 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE complement(814760..815437) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044735.1 CDS SeHA_C0825 NC_011083.1 815434 818118 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD complement(815434..818118) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044736.1 CDS kdpC NC_011083.1 818115 818699 R 'One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex'; potassium-transporting ATPase subunit C complement(818115..818699) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044737.1 CDS kdpB NC_011083.1 818708 820756 R 'One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions'; potassium-transporting ATPase subunit B complement(818708..820756) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044738.1 CDS kdpA NC_011083.1 820777 822456 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(820777..822456) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083672.1 CDS kdpF NC_011083.1 822456 822653 R K+-transporting ATPase, F subunit complement(822456..822653) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044739.1 CDS SeHA_C0830 NC_011083.1 822882 823088 D hypothetical protein 822882..823088 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044740.1 CDS SeHA_C0831 NC_011083.1 823199 824620 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 823199..824620 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044741.1 CDS SeHA_C0832 NC_011083.1 824659 826140 R identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH complement(824659..826140) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044742.1 CDS SeHA_C0833 NC_011083.1 826184 826297 R identified by glimmer; putative; hypothetical protein complement(826184..826297) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044743.1 CDS SeHA_C0834 NC_011083.1 826469 827212 D identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hydrolase-oxidase 826469..827212 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044744.1 CDS SeHA_C0835 NC_011083.1 827228 827884 D identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 827228..827884 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044745.1 CDS SeHA_C0836 NC_011083.1 827878 828810 D identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 827878..828810 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044746.1 CDS SeHA_C0837 NC_011083.1 828800 829534 D identified by match to protein family HMM PF03746; LamB/YcsF family protein 828800..829534 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044747.1 CDS SeHA_C0838 NC_011083.1 829858 829989 D hypothetical protein 829858..829989 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044748.1 CDS SeHA_C0839 NC_011083.1 830049 830615 D identified by match to protein family HMM PF00589; DNA recombinase HbiF 830049..830615 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044749.1 CDS SeHA_C0841 NC_011083.1 831401 832141 D hypothetical protein 831401..832141 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044750.1 CDS glf NC_011083.1 832427 833578 D identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031; UDP-galactopyranose mutase 832427..833578 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044751.1 CDS SeHA_C0843 NC_011083.1 833578 834471 D identified by match to protein family HMM PF00535; glycosyl transferase 833578..834471 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044752.1 CDS SeHA_C0845 NC_011083.1 835443 835616 D galactosyltransferase 835443..835616 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044753.1 CDS SeHA_C0846 NC_011083.1 835745 836515 D identified by match to protein family HMM PF01061; O-antigen export system, permease 835745..836515 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044754.1 CDS SeHA_C0847 NC_011083.1 836519 837229 D identified by match to protein family HMM PF00005; ABC transporter domain-containing protein 836519..837229 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044755.1 CDS SeHA_C0848 NC_011083.1 837323 839101 D glycosyltransferase, cell wall biogenesis 837323..839101 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044756.1 CDS SeHA_C0849 NC_011083.1 839360 840127 D glycosyltransferase 839360..840127 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044757.1 CDS SeHA_C0850 NC_011083.1 840131 842080 D glycosyl transferase 840131..842080 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044758.1 CDS SeHA_C0851 NC_011083.1 842148 842285 D hypothetical protein 842148..842285 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044759.1 CDS SeHA_C0852 NC_011083.1 842334 843125 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 842334..843125 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044760.1 CDS SeHA_C0853 NC_011083.1 843180 844226 R identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082; hypothetical protein complement(843180..844226) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044761.1 CDS gltA NC_011083.1 844363 845646 R 'type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH'; type II citrate synthase complement(844363..845646) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044762.1 CDS sdhC NC_011083.1 846386 846790 D identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase cytochrome b556 large membrane subunit 846386..846790 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044763.1 CDS sdhD NC_011083.1 846784 847131 D identified by match to protein family HMM TIGR02968; succinate dehydrogenase cytochrome b556 small membrane subunit 846784..847131 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044764.1 CDS sdhA NC_011083.1 847131 848897 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 847131..848897 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044765.1 CDS sdhB NC_011083.1 848911 849630 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 848911..849630 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044766.1 CDS sucA NC_011083.1 850154 852955 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 850154..852955 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044767.1 CDS sucB NC_011083.1 852970 854178 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 852970..854178 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044768.1 CDS sucC NC_011083.1 854320 855486 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 854320..855486 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044769.1 CDS SeHA_C0862 NC_011083.1 855486 856355 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 855486..856355 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044770.1 CDS SeHA_C0863 NC_011083.1 856384 856509 D identified by glimmer; putative; hypothetical protein 856384..856509 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044771.1 CDS SeHA_C0864 NC_011083.1 856596 856721 D identified by glimmer; putative; hypothetical protein 856596..856721 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044772.1 CDS SeHA_C0865 NC_011083.1 857343 857468 D identified by glimmer; putative; hypothetical protein 857343..857468 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044773.1 CDS SeHA_C0866 NC_011083.1 857595 857708 R identified by glimmer; putative; hypothetical protein complement(857595..857708) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044774.1 CDS cydA NC_011083.1 857938 859506 D identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 857938..859506 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044775.1 CDS cydB1 NC_011083.1 859522 860661 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 859522..860661 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044776.1 CDS SeHA_C0869 NC_011083.1 860676 860789 D identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106; cyd operon protein YbgT 860676..860789 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044777.1 CDS SeHA_C0870 NC_011083.1 860789 861082 D identified by match to protein family HMM PF09600; match to protein family HMM TIGR02112; hypothetical protein 860789..861082 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044778.1 CDS SeHA_C0871 NC_011083.1 861311 861715 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase YbgC 861311..861715 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044779.1 CDS tolQ NC_011083.1 861712 862404 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 861712..862404 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044780.1 CDS tolR NC_011083.1 862408 862836 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 862408..862836 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044781.1 CDS tolA NC_011083.1 862901 864079 D 'inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins'; cell envelope integrity inner membrane protein TolA 862901..864079 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044782.1 CDS tolB NC_011083.1 864200 865495 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 864200..865495 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044783.1 CDS pal NC_011083.1 865530 866054 D identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; peptidoglycan-associated outer membrane lipoprotein 865530..866054 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044784.1 CDS SeHA_C0877 NC_011083.1 866064 866852 D periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 866064..866852 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044785.1 CDS nadA NC_011083.1 868472 869515 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 868472..869515 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044786.1 CDS SeHA_C0884 NC_011083.1 869540 870259 D identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; hypothetical protein 869540..870259 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044787.1 CDS SeHA_C0885 NC_011083.1 870256 871194 R involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB complement(870256..871194) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044788.1 CDS SeHA_C0886 NC_011083.1 871305 871691 R homeobox protein complement(871305..871691) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044789.1 CDS aroG NC_011083.1 872011 873063 D 'catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive'; phospho-2-dehydro-3-deoxyheptonate aldolase 872011..873063 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083673.1 CDS fumB NC_011083.1 873157 873702 R fumarate hydratase complement(873157..873702) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044790.1 CDS SeHA_C0889 NC_011083.1 873717 874562 R Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase complement(873717..874562) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044791.1 CDS SeHA_C0890 NC_011083.1 874692 875582 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 874692..875582 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044792.1 CDS SeHA_C0891 NC_011083.1 875583 876530 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator complement(875583..876530) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044793.1 CDS SeHA_C0892 NC_011083.1 876789 878057 D identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM PF06808; anion transporter 876789..878057 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044794.1 CDS SeHA_C0893 NC_011083.1 878146 878352 D catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 878146..878352 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044795.1 CDS oadA NC_011083.1 878368 880137 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 878368..880137 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044796.1 CDS SeHA_C0895 NC_011083.1 880153 881454 D identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta 880153..881454 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044797.1 CDS SeHA_C0896 NC_011083.1 881607 882305 D hypothetical protein 881607..882305 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044798.1 CDS SeHA_C0897 NC_011083.1 882685 883764 D identified by match to protein family HMM PF01032; ABC transporter permease 882685..883764 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044799.1 CDS SeHA_C0898 NC_011083.1 883764 884540 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 883764..884540 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044800.1 CDS gpmA NC_011083.1 884631 885383 R '2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate'; phosphoglyceromutase complement(884631..885383) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044801.1 CDS galM NC_011083.1 885607 886647 R 'catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose'; aldose 1-epimerase complement(885607..886647) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044802.1 CDS galK NC_011083.1 886641 887789 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(886641..887789) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044803.1 CDS galT NC_011083.1 887792 888838 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(887792..888838) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044804.1 CDS galE NC_011083.1 888849 889865 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-galactose-4-epimerase complement(888849..889865) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044805.1 CDS SeHA_C0904 NC_011083.1 890088 890996 R hypothetical protein complement(890088..890996) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044806.1 CDS SeHA_C0905 NC_011083.1 891167 892642 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum transport ATP-binding protein ModF complement(891167..892642) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044807.1 CDS SeHA_C0906 NC_011083.1 892710 893498 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE complement(892710..893498) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044808.1 CDS SeHA_C0907 NC_011083.1 893627 893776 D hypothetical protein 893627..893776 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044809.1 CDS modA NC_011083.1 893943 894716 D with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 893943..894716 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044810.1 CDS modB NC_011083.1 894716 895405 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 894716..895405 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044811.1 CDS modC NC_011083.1 895408 896466 D Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 895408..896466 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044812.1 CDS SeHA_C0911 NC_011083.1 896467 897327 R 'YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily'; phosphotransferase complement(896467..897327) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044813.1 CDS SeHA_C0912 NC_011083.1 897449 898444 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 897449..898444 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044814.1 CDS SeHA_C0913 NC_011083.1 898588 899871 R outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase complement(898588..899871) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044815.1 CDS hutI NC_011083.1 900109 901332 D 'catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway'; imidazolonepropionase 900109..901332 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044816.1 CDS hutG NC_011083.1 901329 902270 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 901329..902270 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044817.1 CDS hutC NC_011083.1 902315 903040 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018; histidine utilization repressor 902315..903040 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044818.1 CDS hutU NC_011083.1 903237 904922 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 903237..904922 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044819.1 CDS hutH NC_011083.1 904924 906444 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 904924..906444 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044820.1 CDS SeHA_C0919 NC_011083.1 906529 907005 R YbhB; similar to rat and human kinase inhibitory proteins; kinase inhibitor protein complement(906529..907005) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044821.1 CDS bioA NC_011083.1 907063 908352 R 'catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate'; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(907063..908352) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044822.1 CDS bioB NC_011083.1 908439 909479 D identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 908439..909479 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044823.1 CDS bioF NC_011083.1 909476 910633 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 909476..910633 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044824.1 CDS bioC NC_011083.1 910617 911372 D 'putative methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth'; biotin biosynthesis protein BioC 910617..911372 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044825.1 CDS bioD NC_011083.1 911365 912051 D 'DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium'; dithiobiotin synthetase 911365..912051 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044826.1 CDS uvrB NC_011083.1 912702 914723 D 'The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion'; excinuclease ABC subunit B 912702..914723 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044827.1 CDS SeHA_C0926 NC_011083.1 915282 917477 D hypothetical protein 915282..917477 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044828.1 CDS SeHA_C0927 NC_011083.1 917572 918480 R identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein complement(917572..918480) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044829.1 CDS moaA NC_011083.1 918877 919866 D 'together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z'; molybdenum cofactor biosynthesis protein A 918877..919866 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044830.1 CDS moaB NC_011083.1 919888 920400 D identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B 919888..920400 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044831.1 CDS moaC NC_011083.1 920403 920888 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 920403..920888 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044832.1 CDS moaD NC_011083.1 920881 921126 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 920881..921126 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044833.1 CDS moaE NC_011083.1 921128 921580 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 921128..921580 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044834.1 CDS SeHA_C0933 NC_011083.1 921628 922341 D identified by match to protein family HMM PF01027; hypothetical protein 921628..922341 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044835.1 CDS SeHA_C0934 NC_011083.1 922387 923367 D identified by match to protein family HMM PF01609; IS5 transposase 922387..923367 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044836.1 CDS SeHA_C0935 NC_011083.1 923732 924385 D hypothetical protein 923732..924385 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044837.1 CDS SeHA_C0936 NC_011083.1 924415 925017 D hypothetical protein 924415..925017 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044838.1 CDS SeHA_C0937 NC_011083.1 925025 925585 D hypothetical protein 925025..925585 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044839.1 CDS SeHA_C0938 NC_011083.1 925588 926550 R hypothetical protein complement(925588..926550) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044840.1 CDS SeHA_C0939 NC_011083.1 926550 927791 R identified by match to protein family HMM PF00614; cardiolipin synthase 2 complement(926550..927791) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044841.1 CDS SeHA_C0940 NC_011083.1 927788 928546 R identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein complement(927788..928546) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044842.1 CDS SeHA_C0941 NC_011083.1 928679 929089 D hypothetical protein 928679..929089 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044843.1 CDS SeHA_C0942 NC_011083.1 929051 930157 R identified by match to protein family HMM PF01061; ABC transporter permease complement(929051..930157) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044844.1 CDS SeHA_C0943 NC_011083.1 930273 931403 R identified by match to protein family HMM PF01061; inner membrane transport permease YbhS complement(930273..931403) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044845.1 CDS SeHA_C0944 NC_011083.1 931396 933132 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(931396..933132) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044846.1 CDS SeHA_C0945 NC_011083.1 933125 934120 R identified by match to protein family HMM PF00529; hypothetical protein complement(933125..934120) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044847.1 CDS SeHA_C0946 NC_011083.1 934120 934794 R identified by match to protein family HMM PF00440; match to protein family HMM PF09209; DNA-binding transcriptional regulator complement(934120..934794) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044848.1 CDS SeHA_C0947 NC_011083.1 935024 936385 D this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 935024..936385 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044849.1 CDS dinG NC_011083.1 936593 938737 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 936593..938737 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044850.1 CDS SeHA_C0949 NC_011083.1 938767 939741 D identified by match to protein family HMM PF02885; glycosyl transferase 938767..939741 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044851.1 CDS SeHA_C0951 NC_011083.1 939897 940157 R identified by match to protein family HMM PF07338; hypothetical protein complement(939897..940157) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044852.1 CDS SeHA_C0950 NC_011083.1 940126 940239 D identified by glimmer; putative; hypothetical protein 940126..940239 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044853.1 CDS SeHA_C0952 NC_011083.1 940442 940708 R identified by match to protein family HMM PF01258; hypothetical protein complement(940442..940708) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044854.1 CDS SeHA_C0953 NC_011083.1 940913 941839 D identified by match to protein family HMM PF05971; SAM-dependent methyltransferase 940913..941839 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044855.1 CDS SeHA_C0954 NC_011083.1 941836 944058 R identified by match to protein family HMM PF00924; hypothetical protein complement(941836..944058) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044856.1 CDS glnQ NC_011083.1 944177 944899 R similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein complement(944177..944899) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044857.1 CDS glnP NC_011083.1 944896 945555 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease complement(944896..945555) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044858.1 CDS glnH NC_011083.1 945699 946445 R similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter substrate-binding protein complement(945699..946445) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044859.1 CDS SeHA_C0958 NC_011083.1 946442 946564 R identified by glimmer; putative; hypothetical protein complement(946442..946564) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044860.1 CDS SeHA_C0959 NC_011083.1 946922 947425 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps complement(946922..947425) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044861.1 CDS SeHA_C0960 NC_011083.1 947541 947699 R hypothetical protein complement(947541..947699) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044862.1 CDS SeHA_C0961 NC_011083.1 947728 948615 R identified by match to protein family HMM PF00892; threonine and homoserine efflux system complement(947728..948615) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044863.1 CDS ompX NC_011083.1 948969 949484 D OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 948969..949484 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044864.1 CDS SeHA_C0963 NC_011083.1 949547 951127 R identified by match to protein family HMM PF00884; hypothetical protein complement(949547..951127) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044865.1 CDS SeHA_C0964 NC_011083.1 951128 951256 D identified by glimmer; putative; hypothetical protein 951128..951256 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044866.1 CDS SeHA_C0966 NC_011083.1 951706 952179 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 951706..952179 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044867.1 CDS SeHA_C0967 NC_011083.1 952176 953288 D identified by match to protein family HMM PF03600; citrate transporter family protein 952176..953288 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044868.1 CDS SeHA_C0968 NC_011083.1 953332 954252 R identified by match to protein family HMM PF03734; hypothetical protein complement(953332..954252) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044869.1 CDS SeHA_C0969 NC_011083.1 954471 956066 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 954471..956066 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044870.1 CDS SeHA_C0970 NC_011083.1 956188 957453 R identified by match to protein family HMM PF07350; hypothetical protein complement(956188..957453) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044872.1 CDS SeHA_C0972 NC_011083.1 957715 958524 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; sugar phosphatase SupH 957715..958524 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044873.1 CDS SeHA_C0973 NC_011083.1 958602 961034 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; formate C-acetyltransferase 3 complement(958602..961034) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044874.1 CDS SeHA_C0974 NC_011083.1 961040 961939 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating protein family complement(961040..961939) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044875.1 CDS moeB NC_011083.1 962217 962966 R 'ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase'; molybdopterin biosynthesis protein MoeB complement(962217..962966) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044876.1 CDS moeA NC_011083.1 962966 964201 R is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA complement(962966..964201) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044877.1 CDS SeHA_C0977 NC_011083.1 964404 965345 D identified by match to protein family HMM PF01112; L-asparaginase 964404..965345 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044878.1 CDS SeHA_C0978 NC_011083.1 965356 967227 D with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 965356..967227 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044879.1 CDS SeHA_C0979 NC_011083.1 967260 968798 D identified by match to protein family HMM PF00496; glutathione-binding protein GsiB 967260..968798 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044880.1 CDS gsiC NC_011083.1 968859 969779 D identified by match to protein family HMM PF00528; glutathione ABC transporter permease 968859..969779 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044881.1 CDS SeHA_C0981 NC_011083.1 969782 970693 D identified by match to protein family HMM PF00528; glutathione transport system permease GsiD 969782..970693 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044882.1 CDS rimO NC_011083.1 970784 972109 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(970784..972109) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044883.1 CDS SeHA_C0983 NC_011083.1 972136 972270 D identified by glimmer; putative; hypothetical protein 972136..972270 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044884.1 CDS bssR NC_011083.1 972340 972723 D 'BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing'; biofilm formation regulatory protein BssR 972340..972723 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044885.1 CDS SeHA_C0985 NC_011083.1 973437 973952 D citrate lyase 973437..973952 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044886.1 CDS SeHA_C0986 NC_011083.1 973975 974724 D identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 973975..974724 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044887.1 CDS SeHA_C0987 NC_011083.1 974735 975682 D identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 974735..975682 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044888.1 CDS SeHA_C0989 NC_011083.1 975976 977139 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase domain-containing protein 975976..977139 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044889.1 CDS SeHA_C0990 NC_011083.1 977588 979273 D identified by match to protein family HMM PF01266; match to protein family HMM PF05187; electron transfer flavoprotein-ubiquinone oxidoreductase 977588..979273 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044890.1 CDS SeHA_C0991 NC_011083.1 979279 980169 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(979279..980169) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044891.1 CDS SeHA_C0992 NC_011083.1 980434 980859 R citrate transporter family protein complement(980434..980859) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044892.1 CDS SeHA_C0995 NC_011083.1 981894 982520 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase family protein complement(981894..982520) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044893.1 CDS SeHA_C0996 NC_011083.1 982764 983966 D 'penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 982764..983966 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044894.1 CDS SeHA_C0997 NC_011083.1 984011 984769 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DNA-binding transcriptional repressor DeoR complement(984011..984769) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044895.1 CDS SeHA_C0998 NC_011083.1 984841 985449 R identified by match to protein family HMM PF01569; undecaprenyl pyrophosphate phosphatase complement(984841..985449) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044896.1 CDS SeHA_C0999 NC_011083.1 985762 986994 D identified by match to protein family HMM PF07690; multidrug resistance protein MdtM 985762..986994 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044897.1 CDS SeHA_C1000 NC_011083.1 987048 987863 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; phosphatase YbjI complement(987048..987863) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044898.1 CDS SeHA_C1001 NC_011083.1 987860 989071 R identified by match to protein family HMM PF07690; hypothetical protein complement(987860..989071) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044899.1 CDS SeHA_C1002 NC_011083.1 989239 989799 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 989239..989799 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044900.1 CDS SeHA_C1004 NC_011083.1 989976 991661 R identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein complement(989976..991661) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044901.2 CDS SeHA_C1005 NC_011083.1 991932 992309 D hypothetical protein 991932..992309 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044902.1 CDS grxA NC_011083.1 992341 992604 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(992341..992604) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044903.1 CDS SeHA_C1007 NC_011083.1 992774 993064 D YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 992774..993064 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044904.1 CDS nfsA NC_011083.1 993048 993770 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 993048..993770 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044905.1 CDS rimK NC_011083.1 993828 994730 D responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 993828..994730 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044906.1 CDS SeHA_C1010 NC_011083.1 994827 995303 D hypothetical protein 994827..995303 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044907.1 CDS SeHA_C1011 NC_011083.1 995649 996764 D identified by match to protein family HMM PF01547; putrescine ABC transporter substrate-binding protein 995649..996764 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044908.1 CDS potG NC_011083.1 996852 997985 D part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 996852..997985 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044909.1 CDS potH NC_011083.1 997995 998948 D identified by match to protein family HMM PF00528; putrescine ABC transporter membrane protein 997995..998948 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044910.1 CDS potI NC_011083.1 998945 999790 D identified by match to protein family HMM PF00528; putrescine ABC transporter membrane protein 998945..999790 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044911.1 CDS SeHA_C1015 NC_011083.1 999774 1000337 D hypothetical protein 999774..1000337 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044912.1 CDS rumB NC_011083.1 1000380 1001507 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 1000380..1001507 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044913.1 CDS SeHA_C1017 NC_011083.1 1001665 1001793 D hypothetical protein 1001665..1001793 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044914.1 CDS SeHA_C1018 NC_011083.1 1001802 1003145 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 1001802..1003145 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083674.1 CDS SeHA_C1019 NC_011083.1 1003175 1003495 D hypothetical protein 1003175..1003495 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044915.1 CDS SeHA_C1020 NC_011083.1 1003505 1004992 D identified by match to protein family HMM PF00884; sulfatase 1003505..1004992 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044917.1 CDS artJ NC_011083.1 1005211 1005942 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter periplasmic substrate-binding protein ArtJ complement(1005211..1005942) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044918.1 CDS artM NC_011083.1 1006179 1006847 R with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM complement(1006179..1006847) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044919.1 CDS artQ NC_011083.1 1006847 1007563 R with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ complement(1006847..1007563) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044920.1 CDS artI NC_011083.1 1007570 1008301 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein complement(1007570..1008301) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044921.1 CDS artP NC_011083.1 1008319 1009047 R With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit complement(1008319..1009047) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044922.1 CDS SeHA_C1027 NC_011083.1 1009277 1009792 R induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein complement(1009277..1009792) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044923.1 CDS SeHA_C1028 NC_011083.1 1009920 1010243 D identified by match to protein family HMM PF01906; hypothetical protein 1009920..1010243 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044924.1 CDS SeHA_C1029 NC_011083.1 1010240 1011070 D identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase AmiD 1010240..1011070 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044925.1 CDS SeHA_C1030 NC_011083.1 1011067 1012080 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family complement(1011067..1012080) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044926.1 CDS SeHA_C1031 NC_011083.1 1012176 1013609 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; NAD dependent epimerase/dehydratase family protein complement(1012176..1013609) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044927.1 CDS ltaE NC_011083.1 1013620 1014621 R 'low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine'; L-threonine aldolase complement(1013620..1014621) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044928.1 CDS poxB NC_011083.1 1014660 1016378 R catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase complement(1014660..1016378) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044929.1 CDS hcr NC_011083.1 1016536 1017507 R identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; HCP oxidoreductase, NADH-dependent complement(1016536..1017507) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044930.1 CDS hcp NC_011083.1 1017516 1019168 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(1017516..1019168) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044931.1 CDS SeHA_C1036 NC_011083.1 1019312 1020211 R identified by match to protein family HMM PF03956; hypothetical protein complement(1019312..1020211) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044932.1 CDS SeHA_C1037 NC_011083.1 1020413 1022071 D hypothetical protein 1020413..1022071 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044933.1 CDS SeHA_C1038 NC_011083.1 1022068 1023018 R identified by match to protein family HMM PF04393; hypothetical protein complement(1022068..1023018) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044934.1 CDS SeHA_C1039 NC_011083.1 1023164 1024282 D confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 1023164..1024282 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044935.1 CDS SeHA_C1040 NC_011083.1 1024279 1026225 D with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 1024279..1026225 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044936.1 CDS SeHA_C1041 NC_011083.1 1026257 1026400 D identified by glimmer; putative; hypothetical protein 1026257..1026400 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044937.1 CDS cspD NC_011083.1 1026355 1026576 R identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381; cold shock domain-containing protein CspD complement(1026355..1026576) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044938.1 CDS clpS NC_011083.1 1026900 1027220 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1026900..1027220 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044939.1 CDS clpA NC_011083.1 1027251 1029527 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1027251..1029527 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044940.1 CDS SeHA_C1045 NC_011083.1 1029718 1030176 D identified by match to protein family HMM PF01797; transposase 1029718..1030176 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044942.1 CDS SeHA_C1047 NC_011083.1 1030450 1030647 R hypothetical protein complement(1030450..1030647) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044943.1 CDS SeHA_C1048 NC_011083.1 1030809 1031186 R phage integrase complement(1030809..1031186) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044944.1 CDS SeHA_C1050 NC_011083.1 1032043 1032720 R identified by match to protein family HMM PF00857; hypothetical protein complement(1032043..1032720) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044945.1 CDS SeHA_C1051 NC_011083.1 1032740 1033600 R identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin protein complement(1032740..1033600) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044946.1 CDS SeHA_C1052 NC_011083.1 1033709 1034620 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1033709..1034620 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044947.1 CDS infA NC_011083.1 1034711 1034929 R 'stimulates the activities of the other two initiation factors, IF-2 and IF-3'; translation initiation factor IF-1 complement(1034711..1034929) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044948.1 CDS aat NC_011083.1 1035241 1035945 R 'leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys'; leucyl/phenylalanyl-tRNA--protein transferase complement(1035241..1035945) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044949.1 CDS SeHA_C1055 NC_011083.1 1035990 1037711 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(1035990..1037711) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044950.1 CDS cydD NC_011083.1 1037712 1039478 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(1037712..1039478) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044951.1 CDS trxB NC_011083.1 1039592 1040560 R catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase complement(1039592..1040560) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044952.1 CDS lrp NC_011083.1 1041106 1041600 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1041106..1041600 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044953.1 CDS SeHA_C1059 NC_011083.1 1041678 1045817 D DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 1041678..1045817 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044954.1 CDS lolA NC_011083.1 1045960 1046571 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1045960..1046571 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044955.1 CDS SeHA_C1061 NC_011083.1 1046581 1047924 D identified by match to protein family HMM PF00004; recombination factor protein RarA 1046581..1047924 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044956.1 CDS serS NC_011083.1 1048183 1049475 D 'catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; seryl-tRNA synthetase 1048183..1049475 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044957.1 CDS SeHA_C1063 NC_011083.1 1049712 1052156 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 1049712..1052156 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044958.1 CDS dmsB_2 NC_011083.1 1052167 1052784 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase, B subunit 1052167..1052784 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044959.1 CDS dmsC1 NC_011083.1 1052786 1053649 D identified by match to protein family HMM PF04976; anaerobic dimethyl sulfoxide reductase, C subunit 1052786..1053649 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044960.1 CDS SeHA_C1066 NC_011083.1 1053999 1055147 D identified by match to protein family HMM PF07690; MFS family transporter protein 1053999..1055147 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044961.1 CDS SeHA_C1067 NC_011083.1 1055365 1056786 D identified by match to protein family HMM PF00324; inner membrane transporter YcaM 1055365..1056786 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044962.1 CDS pflA NC_011083.1 1057079 1057876 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(1057079..1057876) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044963.1 CDS SeHA_C1069 NC_011083.1 1058004 1058153 D hypothetical protein 1058004..1058153 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044964.1 CDS SeHA_C1070 NC_011083.1 1058521 1059411 D hypothetical protein 1058521..1059411 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044965.1 CDS pflB2 NC_011083.1 1059484 1061766 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase complement(1059484..1061766) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044966.1 CDS SeHA_C1072 NC_011083.1 1061826 1062641 R identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790; formate transporter FocA complement(1061826..1062641) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044967.1 CDS SeHA_C1073 NC_011083.1 1063089 1064882 R identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702; hypothetical protein complement(1063089..1064882) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044968.1 CDS SeHA_C1074 NC_011083.1 1064986 1065678 D identified by match to protein family HMM PF04239; hypothetical protein 1064986..1065678 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044969.1 CDS serC NC_011083.1 1065864 1066952 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1065864..1066952 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044970.1 CDS aroA NC_011083.1 1067023 1068306 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1067023..1068306 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044971.1 CDS SeHA_C1077 NC_011083.1 1068450 1069211 D identified by match to protein family HMM PF01435; peptidase M48, Ste24p 1068450..1069211 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044972.1 CDS cmk NC_011083.1 1069384 1070067 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1069384..1070067 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044973.1 CDS rpsA NC_011083.1 1070181 1071854 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1070181..1071854 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044974.1 CDS ihfB NC_011083.1 1072010 1072294 D 'This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control'; integration host factor subunit beta 1072010..1072294 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044975.1 CDS SeHA_C1081 NC_011083.1 1072575 1074788 D identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; hypothetical protein 1072575..1074788 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044976.1 CDS msbA NC_011083.1 1074825 1076573 D involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 1074825..1076573 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044977.1 CDS lpxK NC_011083.1 1076570 1077547 D 'transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate'; tetraacyldisaccharide 4'-kinase 1076570..1077547 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044978.1 CDS SeHA_C1084 NC_011083.1 1077591 1078823 D identified by match to protein family HMM PF06224; hypothetical protein 1077591..1078823 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044979.1 CDS SeHA_C1085 NC_011083.1 1078875 1079057 D identified by match to protein family HMM PF03966; hypothetical protein 1078875..1079057 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044980.1 CDS kdsB NC_011083.1 1079054 1079800 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1079054..1079800 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044981.1 CDS SeHA_C1087 NC_011083.1 1080011 1080904 D hypothetical protein 1080011..1080904 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044982.1 CDS SeHA_C1088 NC_011083.1 1080884 1081660 R identified by match to protein family HMM PF02698; hypothetical protein complement(1080884..1081660) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044983.1 CDS smtA NC_011083.1 1081796 1082599 D involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA 1081796..1082599 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044984.1 CDS mukF NC_011083.1 1082592 1083914 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1082592..1083914 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044985.1 CDS mukE NC_011083.1 1083895 1084599 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1083895..1084599 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044986.1 CDS mukB NC_011083.1 1084599 1089065 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1084599..1089065 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044987.1 CDS SeHA_C1093 NC_011083.1 1089410 1091230 D identified by match to protein family HMM PF01471; hypothetical protein 1089410..1091230 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044988.1 CDS SeHA_C1094 NC_011083.1 1091490 1092038 D identified by match to protein family HMM PF05951; match to protein family HMM PF08291; Tat (twin-arginine translocation) pathway signal sequence domain/peptidase M15 family protein 1091490..1092038 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044989.1 CDS SeHA_C1095 NC_011083.1 1092066 1092713 D identified by match to protein family HMM PF00753; hydroxyacylglutathione hydrolase 1092066..1092713 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044990.1 CDS aspC NC_011083.1 1092775 1093965 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1092775..1093965) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044991.1 CDS SeHA_C1097 NC_011083.1 1094150 1095241 R identified by match to protein family HMM PF00267; outer membrane protein F complement(1094150..1095241) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044992.1 CDS SeHA_C1098 NC_011083.1 1095531 1095683 D identified by glimmer; putative; hypothetical protein 1095531..1095683 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044993.1 CDS SeHA_C1099 NC_011083.1 1095772 1095891 R identified by glimmer; putative; hypothetical protein complement(1095772..1095891) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044994.1 CDS asnC NC_011083.1 1095848 1097248 R 'catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; asparaginyl-tRNA synthetase complement(1095848..1097248) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044995.1 CDS SeHA_C1101 NC_011083.1 1097449 1097910 R identified by match to protein family HMM PF01037; regulator for leucine complement(1097449..1097910) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044996.1 CDS SeHA_C1102 NC_011083.1 1097907 1098128 R identified by glimmer; putative; hypothetical protein complement(1097907..1098128) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044997.1 CDS dpaL NC_011083.1 1098227 1099441 D 'catalyzes the formation of pyruvate from 2,3-diaminopropionate'; diaminopropionate ammonia-lyase 1098227..1099441 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044998.1 CDS SeHA_C1104 NC_011083.1 1099514 1099672 D hypothetical protein 1099514..1099672 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002044999.1 CDS SeHA_C1105 NC_011083.1 1099686 1101119 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; transcriptional regulator 1099686..1101119 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045000.1 CDS pncB NC_011083.1 1101200 1102402 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1101200..1102402) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045001.1 CDS SeHA_C1107 NC_011083.1 1102597 1103937 R identified by match to protein family HMM PF00589; integrase complement(1102597..1103937) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045002.1 CDS SeHA_C1108 NC_011083.1 1103934 1104182 R identified by match to protein family HMM PF06806; excisionase complement(1103934..1104182) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045003.1 CDS SeHA_C1109 NC_011083.1 1104223 1104465 R bacteriophage protein complement(1104223..1104465) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045004.1 CDS SeHA_C1110 NC_011083.1 1104468 1105337 R identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; retron adenine methylase complement(1104468..1105337) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045005.1 CDS SeHA_C1111 NC_011083.1 1105334 1106014 R identified by match to protein family HMM PF09588; exonuclease complement(1105334..1106014) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045006.1 CDS SeHA_C1112 NC_011083.1 1106011 1106796 R identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913; recombination protein bet complement(1106011..1106796) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045007.1 CDS SeHA_C1113 NC_011083.1 1106802 1107098 R identified by match to protein family HMM PF06064; host-nuclease inhibitor protein Gam complement(1106802..1107098) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045008.1 CDS kil NC_011083.1 1107189 1107389 R Rac prophage Kil protein; Kil overexpression leads to morphological defects and inhibits cell division; FtsZ inhibitor protein complement(1107189..1107389) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045009.1 CDS SeHA_C1115 NC_011083.1 1107677 1107883 D hypothetical protein 1107677..1107883 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045010.1 CDS SeHA_C1116 NC_011083.1 1107910 1108182 R hypothetical protein complement(1107910..1108182) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045011.2 CDS SeHA_C1117 NC_011083.1 1108814 1109209 R hypothetical protein complement(1108814..1109209) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045012.2 CDS SeHA_C1118 NC_011083.1 1109570 1109890 D Gifsy-1 prophage cI 1109570..1109890 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045013.1 CDS SeHA_C1119 NC_011083.1 1109982 1110887 D identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; replication protein O 1109982..1110887 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045014.1 CDS SeHA_C1120 NC_011083.1 1110884 1111585 D identified by match to protein family HMM PF06992; replication protein P 1110884..1111585 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045015.1 CDS SeHA_C1121 NC_011083.1 1111582 1112031 D hypothetical protein 1111582..1112031 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045016.1 CDS SeHA_C1122 NC_011083.1 1112028 1112561 D hypothetical protein 1112028..1112561 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045017.1 CDS SeHA_C1123 NC_011083.1 1112563 1112823 D hypothetical protein 1112563..1112823 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045018.1 CDS SeHA_C1124 NC_011083.1 1112864 1113844 D identified by match to protein family HMM PF01609; IS5 transposase 1112864..1113844 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045019.1 CDS SeHA_C1125 NC_011083.1 1114030 1114431 D hypothetical protein 1114030..1114431 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045020.2 CDS SeHA_C1126 NC_011083.1 1114539 1115183 D identified by glimmer; putative; hypothetical protein 1114539..1115183 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045021.1 CDS SeHA_C1127 NC_011083.1 1115414 1115647 D identified by match to protein family HMM PF06183; hypothetical protein 1115414..1115647 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045023.1 CDS SeHA_C1129 NC_011083.1 1116047 1116649 D identified by match to protein family HMM PF07105; gifsy-2 prophage protein 1116047..1116649 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045024.1 CDS SeHA_C1130 NC_011083.1 1116649 1116855 D hypothetical protein 1116649..1116855 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045025.1 CDS SeHA_C1131 NC_011083.1 1116858 1117469 D identified by match to protein family HMM PF05766; bacteriophage Lambda NinG protein 1116858..1117469 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045026.1 CDS SeHA_C1132 NC_011083.1 1117602 1118399 D antitermination protein Q 1117602..1118399 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045027.1 CDS SeHA_C1133 NC_011083.1 1118822 1118935 R identified by glimmer; putative; hypothetical protein complement(1118822..1118935) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045028.1 CDS SeHA_C1134 NC_011083.1 1119065 1119253 D identified by glimmer; putative; hypothetical protein 1119065..1119253 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045029.1 CDS SeHA_C1135 NC_011083.1 1119456 1119758 D phage-holin analog protein 1119456..1119758 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045030.1 CDS SeHA_C1136 NC_011083.1 1119736 1120275 D identified by match to protein family HMM PF00959; lysozyme 1119736..1120275 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045031.1 CDS SeHA_C1137 NC_011083.1 1120444 1120581 D bacteriophage protein 1120444..1120581 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045032.1 CDS SeHA_C1138 NC_011083.1 1120583 1121077 D identified by match to protein family HMM PF03245; bacteriophage lysis protein 1120583..1121077 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045033.1 CDS SeHA_C1139 NC_011083.1 1121288 1121821 D identified by match to protein family HMM PF07278; gifsy-2 prophage protein 1121288..1121821 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045034.1 CDS SeHA_C1140 NC_011083.1 1121775 1123916 D identified by match to protein family HMM PF05876; phage terminase large subunit 1121775..1123916 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045035.1 CDS SeHA_C1141 NC_011083.1 1123913 1124119 D hypothetical protein 1123913..1124119 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045036.1 CDS SeHA_C1142 NC_011083.1 1124116 1125663 D identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; phage portal protein, lambda family 1124116..1125663 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045037.1 CDS SeHA_C1143 NC_011083.1 1125614 1127665 D identified by match to protein family HMM PF00574; ATP-dependent protease 1125614..1127665 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045038.1 CDS SeHA_C1144 NC_011083.1 1127756 1128079 D RecA/RadA recombinase 1127756..1128079 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045039.1 CDS SeHA_C1145 NC_011083.1 1128072 1128371 D hypothetical protein 1128072..1128371 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045040.1 CDS SeHA_C1146 NC_011083.1 1128352 1128918 D identified by match to protein family HMM PF06763; prophage minor tail protein Z 1128352..1128918 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045041.1 CDS SeHA_C1147 NC_011083.1 1128915 1129316 D identified by match to protein family HMM PF06141; phage minor tail protein U 1128915..1129316 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045042.1 CDS SeHA_C1148 NC_011083.1 1129328 1130077 D identified by match to protein family HMM PF02368; gifsy-2 prophage VmtV 1129328..1130077 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045043.1 CDS SeHA_C1149 NC_011083.1 1130123 1130521 D identified by match to protein family HMM PF06894; match to protein family HMM TIGR01674; phage minor tail protein G 1130123..1130521 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045044.1 CDS SeHA_C1150 NC_011083.1 1130584 1130847 D identified by match to protein family HMM PF06223; match to protein family HMM TIGR01715; phage tail assembly protein T 1130584..1130847 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045045.1 CDS SeHA_C1151 NC_011083.1 1130828 1133914 D identified by match to protein family HMM PF06791; match to protein family HMM PF09718; match to protein family HMM TIGR01541; gifsy-1 prophage VmtH 1130828..1133914 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045046.1 CDS SeHA_C1152 NC_011083.1 1133911 1134243 D identified by match to protein family HMM PF05939; phage minor tail protein 1133911..1134243 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045047.1 CDS SeHA_C1153 NC_011083.1 1134342 1134866 D identified by match to protein family HMM PF06316; attachment/invasion protein 1134342..1134866 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045048.1 CDS sodC NC_011083.1 1134956 1135489 R identified by match to protein family HMM PF00080; copper/zinc superoxide dismutase complement(1134956..1135489) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045049.1 CDS SeHA_C1155 NC_011083.1 1135579 1136274 D identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600; phage minor tail protein L 1135579..1136274 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045050.1 CDS SeHA_C1156 NC_011083.1 1136284 1137021 D identified by match to protein family HMM PF00877; tail assembly protein 1136284..1137021 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045051.1 CDS SeHA_C1157 NC_011083.1 1137081 1137623 D identified by match to protein family HMM PF06805; bacteriophage lambda tail assembly protein I 1137081..1137623 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045052.1 CDS SeHA_C1158 NC_011083.1 1137695 1141045 D identified by match to protein family HMM PF00041; match to protein family HMM PF09327; host specificity protein J 1137695..1141045 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045053.1 CDS SeHA_C1159 NC_011083.1 1141084 1141326 D hypothetical protein 1141084..1141326 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045054.1 CDS SeHA_C1160 NC_011083.1 1141380 1143755 D identified by match to protein family HMM PF03406; match to protein family HMM PF07484; match to protein family HMM PF08400; side tail fiber protein 1141380..1143755 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083675.1 CDS SeHA_C1161 NC_011083.1 1143752 1144576 D phage tail protein 1143752..1144576 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045055.1 CDS SeHA_C1162 NC_011083.1 1144566 1145147 D identified by match to protein family HMM PF02413; phage tail assembly protein 1144566..1145147 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045056.1 CDS SeHA_C1163 NC_011083.1 1145344 1146066 R identified by match to protein family HMM PF05364; match to protein family HMM PF07487; guanine nucleotide exchange factor SopE complement(1145344..1146066) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045057.1 CDS SeHA_C1164 NC_011083.1 1146279 1146497 D identified by match to protein family HMM PF02796; DNA-invertase 1146279..1146497 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045058.1 CDS SeHA_C1165 NC_011083.1 1146717 1147937 D identified by match to protein family HMM PF01610; transposase 1146717..1147937 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045059.1 CDS pepN NC_011083.1 1148866 1151478 D identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase N 1148866..1151478 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045060.1 CDS pyrD NC_011083.1 1151686 1152696 D 'catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors'; dihydroorotate dehydrogenase 2 1151686..1152696 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045061.1 CDS SeHA_C1168 NC_011083.1 1152862 1153404 D identified by match to protein family HMM PF07126; hypothetical protein 1152862..1153404 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045062.1 CDS SeHA_C1169 NC_011083.1 1153401 1154510 R identified by match to protein family HMM PF00111; match to protein family HMM PF03473; match to protein family HMM PF03476; MOSC domain-containing protein complement(1153401..1154510) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045063.1 CDS rlmL NC_011083.1 1154609 1156717 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1154609..1156717 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045064.1 CDS SeHA_C1171 NC_011083.1 1156730 1158637 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1156730..1158637 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045065.1 CDS SeHA_C1172 NC_011083.1 1158652 1159905 D identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; paraquat-inducible protein A 1158652..1159905 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045066.1 CDS SeHA_C1173 NC_011083.1 1159910 1161550 D identified by match to protein family HMM PF02470; paraquat-inducible protein B 1159910..1161550 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045067.1 CDS SeHA_C1174 NC_011083.1 1161547 1162110 D identified by match to protein family HMM PF03886; hypothetical protein 1161547..1162110 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045068.1 CDS SeHA_C1175 NC_011083.1 1162065 1162202 R identified by glimmer; putative; hypothetical protein complement(1162065..1162202) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045069.1 CDS fabA NC_011083.1 1162633 1163151 R 'catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP'; 3-hydroxydecanoyl-ACP dehydratase complement(1162633..1163151) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045070.1 CDS SeHA_C1177 NC_011083.1 1163220 1164980 R identified by match to protein family HMM PF05362; protease La-like protein complement(1163220..1164980) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045071.1 CDS SeHA_C1178 NC_011083.1 1165166 1165618 D identified by match to protein family HMM PF06303; hypothetical protein 1165166..1165618 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045072.1 CDS ompA NC_011083.1 1165690 1166766 R 'OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d'; outer membrane protein A complement(1165690..1166766) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045073.1 CDS SeHA_C1180 NC_011083.1 1167099 1167608 R identified by match to protein family HMM PF03846; match to protein family HMM TIGR00623; SOS cell division inhibitor complement(1167099..1167608) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045074.1 CDS SeHA_C1181 NC_011083.1 1167825 1168430 D identified by match to protein family HMM PF04993; match to protein family HMM PF04994; TfoX family protein 1167825..1168430 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045075.1 CDS yccS NC_011083.1 1168417 1170570 R identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667; hypothetical protein complement(1168417..1170570) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045076.1 CDS SeHA_C1183 NC_011083.1 1170589 1171035 R identified by match to protein family HMM PF03733; hypothetical protein complement(1170589..1171035) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045077.1 CDS helD NC_011083.1 1171159 1173213 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1171159..1173213 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045078.1 CDS mgsA NC_011083.1 1173249 1173707 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(1173249..1173707) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045079.1 CDS SeHA_C1186 NC_011083.1 1173802 1174464 R hypothetical protein complement(1173802..1174464) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083676.1 CDS SeHA_C1187 NC_011083.1 1174635 1175051 D hypothetical protein 1174635..1175051 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045080.1 CDS SeHA_C1188 NC_011083.1 1175096 1175413 R identified by match to protein family HMM PF08755; match to protein family HMM TIGR02097; heat shock protein HspQ complement(1175096..1175413) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045081.1 CDS SeHA_C1189 NC_011083.1 1175471 1176682 R hypothetical protein complement(1175471..1176682) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045082.1 CDS SeHA_C1190 NC_011083.1 1176897 1177445 D identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 1176897..1177445 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045083.1 CDS SeHA_C1191 NC_011083.1 1177462 1178250 D identified by match to protein family HMM PF00165; regulatory protein 1177462..1178250 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045084.1 CDS SeHA_C1192 NC_011083.1 1178299 1178580 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1178299..1178580 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045085.1 CDS SeHA_C1193 NC_011083.1 1178577 1178906 R transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE complement(1178577..1178906) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045086.1 CDS SeHA_C1194 NC_011083.1 1178993 1179652 R identified by match to protein family HMM PF01027; hypothetical protein complement(1178993..1179652) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045087.1 CDS SeHA_C1196 NC_011083.1 1180080 1180199 D hypothetical protein 1180080..1180199 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045088.2 CDS SeHA_C1197 NC_011083.1 1180273 1180953 R pathogenicity island-encoded protein A complement(1180273..1180953) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045089.1 CDS SeHA_C1198 NC_011083.1 1181175 1182050 R identified by match to protein family HMM PF00805; secreted effector protein complement(1181175..1182050) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045090.1 CDS SeHA_C1199 NC_011083.1 1182310 1182588 D hypothetical protein 1182310..1182588 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045091.1 CDS SeHA_C1200 NC_011083.1 1182598 1182939 R identified by match to protein family HMM PF07824; chaperone protein SigE complement(1182598..1182939) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045092.1 CDS SeHA_C1201 NC_011083.1 1182956 1184641 R identified by match to protein family HMM PF05925; inositol phosphate phosphatase SopB complement(1182956..1184641) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045093.1 CDS SeHA_C1202 NC_011083.1 1185004 1185144 D hypothetical protein 1185004..1185144 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045094.1 CDS SeHA_C1203 NC_011083.1 1185176 1185361 D identified by glimmer; putative; hypothetical protein 1185176..1185361 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045095.1 CDS SeHA_C1204 NC_011083.1 1185364 1186926 R identified by match to protein family HMM PF03577; peptidase family C69 complement(1185364..1186926) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045096.1 CDS SeHA_C1205 NC_011083.1 1187006 1188370 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386; heavy metal sensor kinase subfamily complement(1187006..1188370) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045097.1 CDS uraH NC_011083.1 1189179 1189589 D identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; hydroxyisourate hydrolase 1189179..1189589 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045098.1 CDS hpaC NC_011083.1 1189922 1190434 R identified by match to protein family HMM PF01613; match to protein family HMM TIGR02296; 4-hydroxyphenylacetate 3-monooxygenase, reductase component complement(1189922..1190434) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045099.1 CDS hpaB NC_011083.1 1190452 1192014 R identified by match to protein family HMM PF03241; match to protein family HMM TIGR02310; 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component complement(1190452..1192014) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045100.1 CDS hpaR NC_011083.1 1192232 1192672 R identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337; homoprotocatechuate degradation operon regulator, HpaR complement(1192232..1192672) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045101.1 CDS SeHA_C1211 NC_011083.1 1192947 1194236 D identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303; match to protein family HMM TIGR02305; bifunctional 4-hydroxyphenylacetate degradation isomerase/decarboxylase 1192947..1194236 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045102.1 CDS hpaE NC_011083.1 1194233 1195699 D identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 1194233..1195699 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045103.1 CDS hpaD NC_011083.1 1195701 1196552 D identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1195701..1196552 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045104.1 CDS hpcD NC_011083.1 1196562 1196942 D identified by match to protein family HMM PF02962; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1196562..1196942 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045105.1 CDS hpaH NC_011083.1 1197086 1197889 D identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1197086..1197889 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045106.1 CDS hpaI NC_011083.1 1197900 1198691 D identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1197900..1198691 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045107.1 CDS hpaX NC_011083.1 1198763 1200139 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR02332; 4-hydroxyphenylacetate permease 1198763..1200139 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045108.1 CDS hpaA NC_011083.1 1200149 1201045 D identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM TIGR02297; 4-hydroxyphenylacetate catabolism regulatory protein HpaA 1200149..1201045 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045109.1 CDS SeHA_C1219 NC_011083.1 1201059 1201997 D identified by match to protein family HMM PF00753; hypothetical protein 1201059..1201997 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045110.1 CDS SeHA_C1220 NC_011083.1 1203215 1203370 D hypothetical protein 1203215..1203370 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045111.1 CDS SeHA_C1221 NC_011083.1 1203421 1203726 R with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM complement(1203421..1203726) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045112.1 CDS SeHA_C1222 NC_011083.1 1203726 1204646 R 'functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock'; curved DNA-binding protein CbpA complement(1203726..1204646) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045113.1 CDS SeHA_C1223 NC_011083.1 1204882 1205244 D copper-sensitivity suppressor protein A 1204882..1205244 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045114.1 CDS SeHA_C1224 NC_011083.1 1205293 1207179 D identified by match to protein family HMM PF02683; membrane protein, suppressor for copper-sensitivity B 1205293..1207179 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045115.1 CDS SeHA_C1225 NC_011083.1 1207176 1207799 D identified by match to protein family HMM PF01323; copper sensitivity supression protein 1207176..1207799 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045116.1 CDS SeHA_C1226 NC_011083.1 1207789 1208295 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; suppressor for copper-sensitivity D 1207789..1208295 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045117.1 CDS SeHA_C1227 NC_011083.1 1208428 1209669 D identified by match to protein family HMM PF00328; glucose-1-phosphatase/inositol phosphatase 1208428..1209669 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045118.1 CDS SeHA_C1228 NC_011083.1 1209703 1209930 R hypothetical protein complement(1209703..1209930) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045119.1 CDS wrbA NC_011083.1 1209951 1210547 R stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA complement(1209951..1210547) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045120.1 CDS SeHA_C1230 NC_011083.1 1210945 1211139 D hypothetical protein 1210945..1211139 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045121.1 CDS SeHA_C1231 NC_011083.1 1211236 1211874 D identified by match to protein family HMM PF00440; match to protein family HMM PF08362; HTH-type transcriptional regulator RutR 1211236..1211874 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045122.1 CDS SeHA_C1232 NC_011083.1 1211871 1212266 R identified by match to protein family HMM PF07007; hypothetical protein complement(1211871..1212266) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045123.1 CDS putA NC_011083.1 1212325 1216287 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; multifunctional functional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1212325..1216287) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045124.1 CDS putP NC_011083.1 1216709 1218217 D identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter 1216709..1218217 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083677.1 CDS SeHA_C1236 NC_011083.1 1219110 1219898 D hypothetical protein 1219110..1219898 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045125.1 CDS SeHA_C1237 NC_011083.1 1220004 1220885 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator complement(1220004..1220885) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045126.1 CDS SeHA_C1238 NC_011083.1 1221171 1222667 R identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium-glucose/galactose cotransporter complement(1221171..1222667) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045127.1 CDS SeHA_C1239 NC_011083.1 1222996 1223676 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1222996..1223676) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045128.1 CDS SeHA_C1240 NC_011083.1 1224194 1225336 D identified by match to protein family HMM PF01344; match to protein family HMM PF07646; match to protein family HMM TIGR03547; N-acetylneuraminic acid mutarotase 1224194..1225336 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045129.1 CDS SeHA_C1241 NC_011083.1 1225382 1226074 D identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 1225382..1226074 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045130.1 CDS SeHA_C1242 NC_011083.1 1226357 1227637 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; sialic acid transporter 1226357..1227637 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045131.1 CDS SeHA_C1243 NC_011083.1 1227651 1228754 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase YjhC 1227651..1228754 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045132.1 CDS SeHA_C1246 NC_011083.1 1229251 1229415 R identified by glimmer; putative; hypothetical protein complement(1229251..1229415) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045133.1 CDS SeHA_C1245 NC_011083.1 1229414 1230352 D identified by match to protein family HMM PF02826; 2-hydroxyacid dehydrogenase YcdW 1229414..1230352 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045134.1 CDS SeHA_C1247 NC_011083.1 1230437 1231174 D identified by match to protein family HMM PF02811; hydrolase 1230437..1231174 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045135.1 CDS SeHA_C1248 NC_011083.1 1231198 1231752 D identified by match to protein family HMM PF06192; chaperone, TorD family 1231198..1231752 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045136.1 CDS SeHA_C1249 NC_011083.1 1231841 1232335 D identified by match to protein family HMM PF06496; hypothetical protein 1231841..1232335 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045137.1 CDS SeHA_C1250 NC_011083.1 1232374 1233207 R identified by match to protein family HMM PF03783; curli production assembly/transport component CsgG complement(1232374..1233207) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045138.1 CDS SeHA_C1251 NC_011083.1 1233234 1233650 R nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF complement(1233234..1233650) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045139.1 CDS SeHA_C1252 NC_011083.1 1233677 1234072 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE complement(1233677..1234072) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045140.1 CDS csgD NC_011083.1 1234077 1234727 R activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD complement(1234077..1234727) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045141.1 CDS csgB NC_011083.1 1235481 1235936 D CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1235481..1235936 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045142.1 CDS SeHA_C1255 NC_011083.1 1235978 1236433 D identified by match to protein family HMM PF07012; cryptic curlin major subunit 1235978..1236433 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045143.1 CDS csgC NC_011083.1 1236495 1236821 D involved in autoagglutination of curliated cells; not involved in production of curli fibers; autoagglutination protein 1236495..1236821 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045144.1 CDS SeHA_C1257 NC_011083.1 1236952 1237272 D hypothetical protein 1236952..1237272 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045145.1 CDS SeHA_C1258 NC_011083.1 1237359 1237898 D identified by match to protein family HMM PF01661; hypothetical protein 1237359..1237898 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045146.2 CDS SeHA_C1259 NC_011083.1 1237837 1239321 D identified by match to protein family HMM PF00614; phopholipase D 1237837..1239321 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045147.1 CDS mdoC NC_011083.1 1239338 1240492 R required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein complement(1239338..1240492) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045148.1 CDS mdoG NC_011083.1 1240746 1242299 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1240746..1242299 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045149.1 CDS SeHA_C1262 NC_011083.1 1242292 1244835 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1242292..1244835 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045150.1 CDS SeHA_C1263 NC_011083.1 1244933 1245136 D identified by match to protein family HMM PF07119; hypothetical protein 1244933..1245136 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045151.1 CDS SeHA_C1264 NC_011083.1 1245137 1245511 R hypothetical protein complement(1245137..1245511) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045152.1 CDS SeHA_C1265 NC_011083.1 1245593 1246807 R Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG complement(1245593..1246807) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045153.1 CDS SeHA_C1266 NC_011083.1 1246962 1247882 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(1246962..1247882) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045154.1 CDS SeHA_C1267 NC_011083.1 1248102 1249154 D identified by match to protein family HMM PF00581; hypothetical protein 1248102..1249154 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045155.1 CDS SeHA_C1268 NC_011083.1 1249206 1249781 R identified by match to protein family HMM PF04264; hypothetical protein complement(1249206..1249781) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045156.1 CDS SeHA_C1269 NC_011083.1 1249778 1250350 R identified by match to protein family HMM PF01292; hypothetical protein complement(1249778..1250350) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045157.1 CDS SeHA_C1270 NC_011083.1 1250361 1250564 D hypothetical protein 1250361..1250564 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045158.1 CDS SeHA_C1271 NC_011083.1 1250613 1250726 R hypothetical protein complement(1250613..1250726) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045159.1 CDS solA NC_011083.1 1250767 1251885 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase complement(1250767..1251885) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045160.1 CDS bssS NC_011083.1 1251998 1252255 R 'BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing'; biofilm formation regulatory protein BssS complement(1251998..1252255) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045161.1 CDS SeHA_C1274 NC_011083.1 1252542 1252787 R identified by match to protein family HMM PF06183; DNA damage-inducible protein I complement(1252542..1252787) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045162.1 CDS pyrC NC_011083.1 1252861 1253907 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1252861..1253907) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045163.1 CDS SeHA_C1276 NC_011083.1 1254011 1254571 R identified by match to protein family HMM PF07273; hypothetical protein complement(1254011..1254571) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045164.1 CDS grxB NC_011083.1 1254696 1255343 R cofactor involved in the reduction of disulfides; glutaredoxin complement(1254696..1255343) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045165.1 CDS SeHA_C1278 NC_011083.1 1255407 1256615 R Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH complement(1255407..1256615) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045166.1 CDS SeHA_C1279 NC_011083.1 1256852 1257436 D identified by match to protein family HMM PF00583; ribosomal-protein-S5-alanine N-acetyltransferase 1256852..1257436 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045167.1 CDS SeHA_C1280 NC_011083.1 1257472 1258119 D identified by match to protein family HMM PF04337; hypothetical protein 1257472..1258119 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045168.1 CDS SeHA_C1281 NC_011083.1 1258121 1259044 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; virulence factor MviM-like protein 1258121..1259044 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045169.1 CDS mviN NC_011083.1 1259309 1260883 D identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 1259309..1260883 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045170.1 CDS SeHA_C1283 NC_011083.1 1260965 1261357 R identified by match to protein family HMM PF05130; flagella synthesis protein FlgN complement(1260965..1261357) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045171.1 CDS SeHA_C1284 NC_011083.1 1261392 1261685 R regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM complement(1261392..1261685) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045172.1 CDS flgA NC_011083.1 1261777 1262436 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1261777..1262436) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045173.1 CDS flgB NC_011083.1 1262593 1263009 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1262593..1263009 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045174.1 CDS flgC NC_011083.1 1263013 1263417 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1263013..1263417 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045175.1 CDS flgD NC_011083.1 1263429 1264127 D 'acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production'; flagellar basal body rod modification protein 1263429..1264127 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045176.1 CDS flgE NC_011083.1 1264154 1265365 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1264154..1265365 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045177.1 CDS flgF NC_011083.1 1265386 1266141 D 'FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod'; flagellar basal body rod protein FlgF 1265386..1266141 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045178.1 CDS flgG NC_011083.1 1266155 1266937 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1266155..1266937 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045179.1 CDS flgH NC_011083.1 1267025 1267690 D 'part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod'; flagellar basal body L-ring protein 1267025..1267690 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045180.1 CDS flgI NC_011083.1 1267702 1268799 D 'part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum'; flagellar basal body P-ring protein 1267702..1268799 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045181.1 CDS flgJ NC_011083.1 1268799 1269749 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1268799..1269749 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045182.1 CDS flgK NC_011083.1 1269814 1271475 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1269814..1271475 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045183.1 CDS flgL NC_011083.1 1271490 1272443 D 'with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes'; flagellar hook-associated protein FlgL 1271490..1272443 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045184.1 CDS rne NC_011083.1 1272700 1275903 R 'bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase'; ribonuclease E complement(1272700..1275903) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045185.1 CDS SeHA_C1299 NC_011083.1 1276477 1277436 D 'catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA'; 23S rRNA pseudouridylate synthase C 1276477..1277436 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045186.1 CDS SeHA_C1300 NC_011083.1 1277574 1278335 D hypothetical protein 1277574..1278335 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045187.1 CDS SeHA_C1301 NC_011083.1 1278538 1278762 D hypothetical protein 1278538..1278762 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045188.1 CDS maf NC_011083.1 1278833 1279417 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1278833..1279417) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045189.1 CDS SeHA_C1304 NC_011083.1 1279615 1280136 D identified by match to protein family HMM PF02620; hypothetical protein 1279615..1280136 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045190.1 CDS SeHA_C1305 NC_011083.1 1280122 1280526 R identified by glimmer; putative; hypothetical protein complement(1280122..1280526) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045191.1 CDS plsX NC_011083.1 1280495 1281574 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1280495..1281574 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045192.1 CDS fabH NC_011083.1 1281654 1282607 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1281654..1282607 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045193.1 CDS fabD NC_011083.1 1282623 1283552 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1282623..1283552 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045194.1 CDS fabG NC_011083.1 1283565 1284299 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1283565..1284299 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045195.1 CDS acpP NC_011083.1 1284455 1284691 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1284455..1284691 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045196.1 CDS fabF NC_011083.1 1284777 1286018 D 'FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP'; 3-oxoacyl-(acyl carrier protein) synthase II 1284777..1286018 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045197.1 CDS pabC NC_011083.1 1286142 1286951 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1286142..1286951 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045198.1 CDS SeHA_C1313 NC_011083.1 1286954 1287976 D identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 1286954..1287976 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045199.1 CDS tmk NC_011083.1 1287966 1288607 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1287966..1288607 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045200.1 CDS SeHA_C1315 NC_011083.1 1288604 1289608 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1288604..1289608 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045201.1 CDS SeHA_C1316 NC_011083.1 1289619 1290416 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; metallodependent hydrolase 1289619..1290416 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045202.1 CDS ptsG NC_011083.1 1290711 1292144 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 1290711..1292144 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045203.1 CDS SeHA_C1318 NC_011083.1 1292229 1294403 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferric-rhodotorulic acid outer membrane transporter complement(1292229..1294403) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045204.1 CDS SeHA_C1319 NC_011083.1 1294726 1295103 D identified by match to protein family HMM PF01230; purine nucleoside phosphoramidase 1294726..1295103 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045205.1 CDS SeHA_C1320 NC_011083.1 1295106 1295480 D identified by match to protein family HMM PF07233; hypothetical protein 1295106..1295480 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045206.1 CDS SeHA_C1321 NC_011083.1 1295494 1296132 D identified by match to protein family HMM TIGR02722; hypothetical protein 1295494..1296132 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045207.1 CDS thiK NC_011083.1 1296113 1296937 D catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1296113..1296937 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045208.1 CDS nagZ NC_011083.1 1296948 1297973 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1296948..1297973 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045209.1 CDS SeHA_C1324 NC_011083.1 1297998 1298540 D identified by match to protein family HMM PF05728; hypothetical protein 1297998..1298540 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045210.1 CDS ndh NC_011083.1 1298767 1300098 D identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992; NADH dehydrogenase 1298767..1300098 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045211.1 CDS SeHA_C1326 NC_011083.1 1300277 1300816 D identified by match to protein family HMM PF05433; hypothetical protein 1300277..1300816 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045212.1 CDS SeHA_C1327 NC_011083.1 1300891 1301526 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1300891..1301526) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045213.1 CDS SeHA_C1328 NC_011083.1 1301768 1302025 D identified by match to protein family HMM PF07338; hypothetical protein 1301768..1302025 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045214.1 CDS SeHA_C1329 NC_011083.1 1302122 1303087 R identified by match to protein family HMM PF01476; match to protein family HMM PF03734; LysM domain/ErfK/YbiS/YcfS/YnhG family protein complement(1302122..1303087) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045215.1 CDS mfd NC_011083.1 1303235 1306681 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(1303235..1306681) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045216.1 CDS SeHA_C1331 NC_011083.1 1306687 1306845 D identified by glimmer; putative; hypothetical protein 1306687..1306845 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045217.1 CDS lolC NC_011083.1 1307019 1308218 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1307019..1308218 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045218.1 CDS lolD NC_011083.1 1308211 1308912 D 'outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone'; lipoprotein transporter ATP-binding subunit 1308211..1308912 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045219.1 CDS lolE NC_011083.1 1308912 1310156 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1308912..1310156 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045220.1 CDS nagK NC_011083.1 1310185 1311096 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1310185..1311096 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045221.1 CDS SeHA_C1336 NC_011083.1 1311115 1311936 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1311115..1311936 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045222.1 CDS potD NC_011083.1 1312018 1313064 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein complement(1312018..1313064) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045223.1 CDS potC NC_011083.1 1313089 1313868 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter permease complement(1313089..1313868) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045224.1 CDS SeHA_C1339 NC_011083.1 1313971 1314093 R identified by glimmer; putative; hypothetical protein complement(1313971..1314093) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045225.1 CDS sifA NC_011083.1 1314184 1315194 R translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein complement(1314184..1315194) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045226.1 CDS SeHA_C1341 NC_011083.1 1315253 1315429 R hypothetical protein complement(1315253..1315429) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045227.1 CDS potB NC_011083.1 1315523 1316386 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter permease complement(1315523..1316386) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045228.1 CDS potA NC_011083.1 1316370 1317506 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase complement(1316370..1317506) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045229.1 CDS pepT NC_011083.1 1317757 1318986 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1317757..1318986 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045230.1 CDS SeHA_C1345 NC_011083.1 1318990 1320324 D identified by match to protein family HMM PF07719; hypothetical protein 1318990..1320324 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045231.1 CDS SeHA_C1346 NC_011083.1 1320364 1321485 R identified by match to protein family HMM PF08007; cupin family protein complement(1320364..1321485) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045232.1 CDS SeHA_C1347 NC_011083.1 1321566 1323029 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08918; sensor protein PhoQ complement(1321566..1323029) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045233.1 CDS SeHA_C1348 NC_011083.1 1323029 1323703 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP complement(1323029..1323703) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045234.1 CDS purB NC_011083.1 1323827 1325197 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1323827..1325197) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045235.1 CDS SeHA_C1350 NC_011083.1 1325201 1325842 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1325201..1325842) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045236.1 CDS mnmA NC_011083.1 1325929 1327035 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1325929..1327035) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045237.1 CDS SeHA_C1352 NC_011083.1 1327089 1327550 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(1327089..1327550) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045238.1 CDS SeHA_C1353 NC_011083.1 1327562 1327891 R hypothetical protein complement(1327562..1327891) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045239.2 CDS SeHA_C1354 NC_011083.1 1327888 1328553 R identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase E complement(1327888..1328553) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045240.1 CDS icd NC_011083.1 1328725 1329975 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1328725..1329975 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045241.1 CDS SeHA_C1356 NC_011083.1 1330171 1330629 D identified by match to protein family HMM PF01797; transposase 1330171..1330629 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045242.1 CDS SeHA_C1357 NC_011083.1 1331123 1332247 D hypothetical protein 1331123..1332247 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045243.1 CDS SeHA_C1359 NC_011083.1 1333232 1334020 R envelope protein EnvF complement(1333232..1334020) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045244.1 CDS SeHA_C1360 NC_011083.1 1334510 1334749 R identified by match to protein family HMM PF06183; hypothetical protein complement(1334510..1334749) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045245.1 CDS SeHA_C1361 NC_011083.1 1334940 1335461 R identified by match to protein family HMM PF00652; envelope protein EnvE complement(1334940..1335461) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045246.1 CDS SeHA_C1362 NC_011083.1 1336786 1336914 D hypothetical protein 1336786..1336914 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045247.1 CDS SeHA_C1363 NC_011083.1 1337293 1337850 D identified by match to protein family HMM PF06316; virulence membrane protein PagC 1337293..1337850 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045248.1 CDS SeHA_C1366 NC_011083.1 1338847 1338972 D identified by glimmer; putative; hypothetical protein 1338847..1338972 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045249.1 CDS SeHA_C1367 NC_011083.1 1339087 1339431 R PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor complement(1339087..1339431) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045250.1 CDS SeHA_C1368 NC_011083.1 1339809 1339934 D hypothetical protein 1339809..1339934 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045251.1 CDS SeHA_C1369 NC_011083.1 1340066 1340239 R hypothetical protein complement(1340066..1340239) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045252.1 CDS SeHA_C1370 NC_011083.1 1340555 1341025 D identified by match to protein family HMM PF00011; heat shock protein 1340555..1341025 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045253.1 CDS SeHA_C1371 NC_011083.1 1341364 1342407 D hypothetical protein 1341364..1342407 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045254.1 CDS SeHA_C1372 NC_011083.1 1342489 1343019 R identified by match to protein family HMM PF01292; nickel-dependent hydrogenase, B-type cytochrome subunit complement(1342489..1343019) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045255.1 CDS SeHA_C1373 NC_011083.1 1343168 1343482 R hypothetical protein complement(1343168..1343482) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045256.1 CDS SeHA_C1374 NC_011083.1 1343574 1343732 R identified by glimmer; putative; hypothetical protein complement(1343574..1343732) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045257.1 CDS SeHA_C1375 NC_011083.1 1343878 1344021 R identified by glimmer; putative; hypothetical protein complement(1343878..1344021) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045258.1 CDS SeHA_C1376 NC_011083.1 1344164 1345798 D identified by match to protein family HMM PF00496; nickel ABC transporter substrate-binding protein 1344164..1345798 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045259.1 CDS SeHA_C1377 NC_011083.1 1345798 1346772 D identified by match to protein family HMM PF00528; dipeptide/oligopeptide/nickel ABC transporter permease 1345798..1346772 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045260.1 CDS SeHA_C1378 NC_011083.1 1346762 1347574 D identified by match to protein family HMM PF00528; nickel/di-oligopepetide ABC transporter permease 1346762..1347574 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045261.1 CDS SeHA_C1379 NC_011083.1 1347568 1348365 D identified by match to protein family HMM PF00005; nickel/di-oligopepetide ABC transporter ATP-binding protein 1347568..1348365 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045262.1 CDS SeHA_C1380 NC_011083.1 1348359 1348949 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1348359..1348949 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045263.1 CDS SeHA_C1381 NC_011083.1 1349031 1350164 R identified by match to protein family HMM PF00924; mechanosensitive ion channel protein MscS complement(1349031..1350164) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045264.1 CDS SeHA_C1383 NC_011083.1 1350553 1350720 R hypothetical protein complement(1350553..1350720) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045265.1 CDS SeHA_C1384 NC_011083.1 1350878 1351528 D identified by match to protein family HMM PF09223; hypothetical protein 1350878..1351528 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045266.2 CDS SeHA_C1385 NC_011083.1 1351636 1352424 D streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1351636..1352424 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045267.1 CDS SeHA_C1386 NC_011083.1 1352569 1353162 D identified by match to protein family HMM PF00196; regulatory protein 1352569..1353162 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045268.1 CDS SeHA_C1387 NC_011083.1 1353231 1354079 D identified by match to protein family HMM PF00376; transcriptional regulator 1353231..1354079 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045269.1 CDS SeHA_C1388 NC_011083.1 1354334 1354522 R hypothetical protein complement(1354334..1354522) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045270.1 CDS SeHA_C1389 NC_011083.1 1354661 1354816 R hypothetical protein complement(1354661..1354816) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045271.1 CDS SeHA_C1390 NC_011083.1 1354899 1355444 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1354899..1355444 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045272.1 CDS SeHA_C1391 NC_011083.1 1355641 1356279 D identified by match to protein family HMM PF01810; leucine export protein LeuE 1355641..1356279 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045273.1 CDS SeHA_C1393 NC_011083.1 1356356 1356475 R identified by glimmer; putative; hypothetical protein complement(1356356..1356475) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045274.1 CDS SeHA_C1392 NC_011083.1 1356452 1356814 D identified by match to protein family HMM PF09313; hypothetical protein 1356452..1356814 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045275.1 CDS SeHA_C1394 NC_011083.1 1356817 1356999 D identified by match to protein family HMM PF08956; hypothetical protein 1356817..1356999 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045276.1 CDS SeHA_C1395 NC_011083.1 1357229 1357870 D nitric oxide reductase 1357229..1357870 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045277.1 CDS SeHA_C1396 NC_011083.1 1357991 1358176 D hypothetical protein 1357991..1358176 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045278.1 CDS SeHA_C1398 NC_011083.1 1358184 1358432 D identified by match to protein family HMM PF04226; hypothetical protein 1358184..1358432 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045280.1 CDS SeHA_C1400 NC_011083.1 1358865 1359116 D identified by match to protein family HMM PF03891; hemolysin 1358865..1359116 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045281.1 CDS SeHA_C1401 NC_011083.1 1359185 1359496 D hypothetical protein 1359185..1359496 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045282.1 CDS SeHA_C1402 NC_011083.1 1359482 1359829 R identified by match to protein family HMM PF04343; hypothetical protein complement(1359482..1359829) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045283.1 CDS SeHA_C1403 NC_011083.1 1359948 1361132 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00896; inner membrane transport protein YeaN complement(1359948..1361132) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083678.1 CDS SeHA_C1404 NC_011083.1 1361233 1362027 D transcriptional regulator 1361233..1362027 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045284.1 CDS SeHA_C1406 NC_011083.1 1362007 1362453 R identified by match to protein family HMM PF04284; hypothetical protein complement(1362007..1362453) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045285.1 CDS SeHA_C1405 NC_011083.1 1362440 1362592 D hypothetical protein 1362440..1362592 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045286.1 CDS SeHA_C1407 NC_011083.1 1362623 1362766 D hypothetical protein 1362623..1362766 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045287.1 CDS SeHA_C1408 NC_011083.1 1362763 1363290 R identified by match to protein family HMM PF04073; YbaK/prolyl-tRNA synthetase-associated domain-containing protein complement(1362763..1363290) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045288.1 CDS SeHA_C1409 NC_011083.1 1363331 1364824 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain-containing protein complement(1363331..1364824) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045289.1 CDS SeHA_C1410 NC_011083.1 1365465 1366751 R identified by match to protein family HMM PF04285; hypothetical protein complement(1365465..1366751) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045290.1 CDS SeHA_C1411 NC_011083.1 1366752 1366871 D identified by glimmer; putative; hypothetical protein 1366752..1366871 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045291.1 CDS SeHA_C1412 NC_011083.1 1366874 1368808 R identified by match to protein family HMM PF06798; match to protein family HMM PF08298; serine protein kinase, PrkA complement(1366874..1368808) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045292.1 CDS SeHA_C1413 NC_011083.1 1369234 1369980 D identified by match to protein family HMM PF06629; MltA-interacting protein 1369234..1369980 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045293.1 CDS SeHA_C1414 NC_011083.1 1370270 1371466 D chondroitin sulfate/heparin utilization regulation protein 1370270..1371466 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045294.1 CDS SeHA_C1415 NC_011083.1 1371572 1372420 D identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 1371572..1372420 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045295.1 CDS SeHA_C1416 NC_011083.1 1372519 1373403 R identified by match to protein family HMM PF01263; aldose 1-epimerase complement(1372519..1373403) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045296.1 CDS gapA NC_011083.1 1373738 1374733 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; gIyceraldehyde-3-phosphate dehydrogenase complement(1373738..1374733) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045297.1 CDS msrB NC_011083.1 1375075 1375488 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1375075..1375488 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045298.1 CDS SeHA_C1419 NC_011083.1 1375530 1375808 D identified by match to protein family HMM PF07023; general negative regulator of transcription subunit 1 1375530..1375808 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045299.1 CDS SeHA_C1420 NC_011083.1 1376160 1376816 R catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase complement(1376160..1376816) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045300.2 CDS ansA NC_011083.1 1376843 1377859 R converts asparagine to aspartate and ammonia; asparaginase complement(1376843..1377859) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045301.1 CDS sppA NC_011083.1 1377955 1379811 R SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 complement(1377955..1379811) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045302.1 CDS SeHA_C1423 NC_011083.1 1379985 1380536 D identified by match to protein family HMM PF00881; hypothetical protein 1379985..1380536 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045303.1 CDS selD NC_011083.1 1380654 1381697 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1380654..1381697 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045304.1 CDS topB NC_011083.1 1381702 1383651 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1381702..1383651 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045305.1 CDS gdhA NC_011083.1 1383681 1385024 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1383681..1385024) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045306.1 CDS SeHA_C1427 NC_011083.1 1385263 1385538 D identified by match to protein family HMM PF07383; hypothetical protein 1385263..1385538 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045307.1 CDS SeHA_C1428 NC_011083.1 1385498 1385914 R identified by match to protein family HMM PF00293; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase complement(1385498..1385914) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045308.1 CDS xth NC_011083.1 1385987 1386793 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1385987..1386793) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045309.1 CDS astC NC_011083.1 1387239 1388465 D catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1387239..1388465 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045310.1 CDS astA NC_011083.1 1388456 1389490 D identified by match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244; arginine succinyltransferase 1388456..1389490 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045311.1 CDS astD NC_011083.1 1389487 1390965 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1389487..1390965 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045312.1 CDS astB NC_011083.1 1390962 1392305 D 'catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation'; succinylarginine dihydrolase 1390962..1392305 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045313.1 CDS astE NC_011083.1 1392298 1393266 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1392298..1393266 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045315.1 CDS spy NC_011083.1 1393602 1394087 D periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1393602..1394087 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045316.1 CDS SeHA_C1437 NC_011083.1 1394162 1395043 R 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease complement(1394162..1395043) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045317.1 CDS nadE NC_011083.1 1395164 1395991 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1395164..1395991) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045318.1 CDS SeHA_C1438 NC_011083.1 1395944 1396078 D identified by glimmer; putative; hypothetical protein 1395944..1396078 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045319.1 CDS osmE NC_011083.1 1396210 1396551 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1396210..1396551 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045320.1 CDS chbB NC_011083.1 1396852 1397172 D 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1396852..1397172 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045321.1 CDS chbC NC_011083.1 1397255 1398613 D 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1397255..1398613 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045322.1 CDS SeHA_C1443 NC_011083.1 1398664 1399011 D 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1398664..1399011 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045323.1 CDS SeHA_C1444 NC_011083.1 1399022 1399864 D represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1399022..1399864 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045324.1 CDS SeHA_C1445 NC_011083.1 1399989 1401344 D identified by match to protein family HMM PF02056; 6-phospho-beta-glucosidase 1399989..1401344 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045325.1 CDS SeHA_C1446 NC_011083.1 1401357 1402115 D identified by match to protein family HMM PF04794; hypothetical protein 1401357..1402115 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045326.1 CDS katE NC_011083.1 1402159 1404411 R Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II complement(1402159..1404411) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045327.1 CDS SeHA_C1448 NC_011083.1 1404776 1405018 D cell division modulator 1404776..1405018 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045328.1 CDS SeHA_C1449 NC_011083.1 1405120 1406511 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family complement(1405120..1406511) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045329.1 CDS SeHA_C1450 NC_011083.1 1406648 1407247 R identified by match to protein family HMM PF04307; hypothetical protein complement(1406648..1407247) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045330.1 CDS SeHA_C1451 NC_011083.1 1407385 1408053 R 'YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate'; 2-deoxyglucose-6-phosphatase complement(1407385..1408053) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045331.1 CDS SeHA_C1452 NC_011083.1 1408202 1408738 D hypothetical protein 1408202..1408738 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045332.1 CDS SeHA_C1453 NC_011083.1 1408781 1409641 R identified by match to protein family HMM PF01636; match to protein family HMM PF03881; fructosamine kinase complement(1408781..1409641) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045333.1 CDS SeHA_C1454 NC_011083.1 1409748 1410038 R hypothetical protein complement(1409748..1410038) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045334.1 CDS pfkB NC_011083.1 1410134 1411066 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 6-phosphofructokinase complement(1410134..1411066) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045335.1 CDS SeHA_C1456 NC_011083.1 1411388 1412113 D identified by match to protein family HMM PF04338; hypothetical protein 1411388..1412113 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045336.1 CDS SeHA_C1457 NC_011083.1 1412162 1413121 R hypothetical protein complement(1412162..1413121) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045337.1 CDS SeHA_C1458 NC_011083.1 1413263 1413577 D hypothetical protein 1413263..1413577 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045338.1 CDS SeHA_C1459 NC_011083.1 1413574 1414428 D identified by match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 1413574..1414428 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045339.1 CDS SeHA_C1460 NC_011083.1 1415130 1416353 R O-antigen polymerase complement(1415130..1416353) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045340.1 CDS thrS NC_011083.1 1417245 1419173 D 'catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; threonyl-tRNA synthetase 1417245..1419173 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045341.1 CDS infC NC_011083.1 1419285 1419719 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1419285..1419719 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045342.1 CDS rpmI NC_011083.1 1419815 1420012 D identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1419815..1420012 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045343.1 CDS rplT NC_011083.1 1420063 1420419 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1420063..1420419 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045344.1 CDS pheS NC_011083.1 1420721 1421704 D 'catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily'; phenylalanyl-tRNA synthetase subunit alpha 1420721..1421704 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045345.1 CDS pheT NC_011083.1 1421720 1424107 D 'catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily'; phenylalanyl-tRNA synthetase subunit beta 1421720..1424107 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045346.1 CDS ihfA NC_011083.1 1424112 1424411 D 'This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control'; integration host factor subunit alpha 1424112..1424411 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045347.1 CDS SeHA_C1468 NC_011083.1 1424614 1425594 D with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1424614..1425594 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045348.1 CDS btuE NC_011083.1 1425686 1426237 D similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; glutathione peroxidase 1425686..1426237 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045349.1 CDS SeHA_C1470 NC_011083.1 1426237 1426986 D ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1426237..1426986 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045350.1 CDS SeHA_C1471 NC_011083.1 1427063 1427527 D identified by match to protein family HMM PF00877; hypothetical protein 1427063..1427527 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045351.1 CDS SeHA_C1474 NC_011083.1 1428616 1430058 D identified by match to protein family HMM PF02696; hypothetical protein 1428616..1430058 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045352.1 CDS SeHA_C1475 NC_011083.1 1430093 1430275 R hypothetical protein complement(1430093..1430275) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045353.1 CDS aroH NC_011083.1 1430441 1431487 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1430441..1431487) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045354.1 CDS SeHA_C1477 NC_011083.1 1431643 1432476 R identified by match to protein family HMM PF03618; hypothetical protein complement(1431643..1432476) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045355.1 CDS ppsA NC_011083.1 1432813 1435191 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1432813..1435191 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045356.1 CDS SeHA_C1480 NC_011083.1 1435233 1436873 R acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase complement(1435233..1436873) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045357.1 CDS SeHA_C1481 NC_011083.1 1436963 1437256 R 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein complement(1436963..1437256) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045358.1 CDS SeHA_C1482 NC_011083.1 1437253 1438539 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; hypothetical protein complement(1437253..1438539) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045359.1 CDS SeHA_C1483 NC_011083.1 1438596 1439531 R May play a role in a redox process; electron transfer flavoprotein subunit YdiR complement(1438596..1439531) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045360.1 CDS ydiQ NC_011083.1 1439553 1440317 R 'YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain'; electron transfer flavoprotein YdiQ complement(1439553..1440317) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045361.1 CDS SeHA_C1485 NC_011083.1 1440573 1440722 R identified by glimmer; putative; hypothetical protein complement(1440573..1440722) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045362.1 CDS SeHA_C1486 NC_011083.1 1440780 1441670 D identified by match to protein family HMM PF00165; match to protein family HMM PF07883; araC family transcriptional regulator 1440780..1441670 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045363.1 CDS SeHA_C1487 NC_011083.1 1441746 1442897 R may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase complement(1441746..1442897) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045364.1 CDS SeHA_C1488 NC_011083.1 1442911 1444506 R identified by match to protein family HMM PF01144; propionate CoA-transferase complement(1442911..1444506) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045365.1 CDS aroD NC_011083.1 1444660 1445418 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(1444660..1445418) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045366.1 CDS SeHA_C1490 NC_011083.1 1445463 1446329 R YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase complement(1445463..1446329) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045367.1 CDS SeHA_C1491 NC_011083.1 1446396 1447631 R identified by match to protein family HMM PF07690; major facilitator family transporter protein complement(1446396..1447631) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045368.1 CDS SeHA_C1492 NC_011083.1 1448144 1449355 R identified by match to protein family HMM PF07690; inner membrane transport protein YdiM complement(1448144..1449355) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045369.1 CDS SeHA_C1493 NC_011083.1 1449496 1449855 R identified by match to protein family HMM PF08965; hypothetical protein complement(1449496..1449855) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045370.1 CDS SeHA_C1495 NC_011083.1 1450313 1451431 R 'YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function'; inner membrane protein complement(1450313..1451431) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045371.1 CDS SeHA_C1496 NC_011083.1 1451696 1454752 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; FAD linked oxidase 1451696..1454752 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045372.1 CDS SeHA_C1497 NC_011083.1 1454749 1455159 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 1454749..1455159 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045373.1 CDS SeHA_C1500 NC_011083.1 1455734 1457080 R identified by match to protein family HMM PF00375; dicarboxylate/amino acid:cation (Na+ or H+) symporter family protein complement(1455734..1457080) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045374.1 CDS sufA NC_011083.1 1457507 1457875 D functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1457507..1457875 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045375.1 CDS sufB NC_011083.1 1457884 1459371 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1457884..1459371 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045376.1 CDS sufC NC_011083.1 1459388 1460134 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1459388..1460134 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045377.1 CDS sufD NC_011083.1 1460109 1461380 D with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1460109..1461380 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045378.1 CDS SeHA_C1505 NC_011083.1 1461377 1462597 D catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1461377..1462597 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045379.1 CDS SeHA_C1506 NC_011083.1 1462610 1463026 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1462610..1463026 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045380.1 CDS SeHA_C1507 NC_011083.1 1463181 1464182 D identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1463181..1464182 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045381.1 CDS SeHA_C1508 NC_011083.1 1464249 1464488 R identified by match to protein family HMM PF04728; hypothetical protein complement(1464249..1464488) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045382.1 CDS SeHA_C1509 NC_011083.1 1464530 1464745 D identified by glimmer; putative; hypothetical protein 1464530..1464745 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045383.1 CDS lpp NC_011083.1 1464894 1465130 R identified by match to protein family HMM PF04728; major outer membrane lipoprotein complement(1464894..1465130) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045384.1 CDS pykF NC_011083.1 1465441 1466853 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1465441..1466853) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045385.1 CDS SeHA_C1513 NC_011083.1 1467255 1468598 R identified by match to protein family HMM PF00324; amino acid transporter complement(1467255..1468598) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083679.1 CDS SeHA_C1514 NC_011083.1 1468620 1469513 R proline aminopeptidase complement(1468620..1469513) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045386.1 CDS SeHA_C1515 NC_011083.1 1469572 1470309 R identified by match to protein family HMM PF07090; hypothetical protein complement(1469572..1470309) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045387.1 CDS SeHA_C1516 NC_011083.1 1470321 1471547 R identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; regulatory protein complement(1470321..1471547) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045388.1 CDS SeHA_C1517 NC_011083.1 1471870 1474932 R identified by match to protein family HMM PF01568; match to protein family HMM PF04879; tetrathionate reductase complex subunit A complement(1471870..1474932) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045389.1 CDS SeHA_C1518 NC_011083.1 1474925 1475947 R identified by match to protein family HMM PF03916; tetrathionate reductase complex subunit C complement(1474925..1475947) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045390.1 CDS SeHA_C1519 NC_011083.1 1475948 1476682 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; tetrathionate reductase subunit B complement(1475948..1476682) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045391.1 CDS SeHA_C1520 NC_011083.1 1476894 1478642 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor-kinase 1476894..1478642 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045392.1 CDS SeHA_C1521 NC_011083.1 1478599 1479237 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; response regulator 1478599..1479237 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045393.1 CDS SeHA_C1522 NC_011083.1 1479335 1479547 D hypothetical protein 1479335..1479547 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045394.1 CDS SeHA_C1523 NC_011083.1 1479643 1480602 R identified by match to protein family HMM PF04463; match to protein family HMM PF08349; pathogenicity island protein complement(1479643..1480602) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045395.1 CDS SeHA_C1525 NC_011083.1 1480775 1481503 R identified by match to protein family HMM PF00376; merR family transcriptional regulator complement(1480775..1481503) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045396.1 CDS SeHA_C1526 NC_011083.1 1481682 1482320 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; two-component response regulator EsrB complement(1481682..1482320) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045397.1 CDS SeHA_C1527 NC_011083.1 1482351 1485113 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; secretion system regulator:Sensor component complement(1482351..1485113) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045398.1 CDS SeHA_C1528 NC_011083.1 1485917 1487410 D identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; type III secretion outer membrane pore, YscC/HrcC family 1485917..1487410 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045399.1 CDS SeHA_C1529 NC_011083.1 1487403 1488602 D identified by match to protein family HMM TIGR02500; type III secretion apparatus protein, YscD/HrpQ family 1487403..1488602 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045400.1 CDS SeHA_C1530 NC_011083.1 1488610 1488852 D identified by match to protein family HMM TIGR02501; type III secretion system protein, YseE family 1488610..1488852 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045401.1 CDS SeHA_C1531 NC_011083.1 1489449 1490039 D identified by match to protein family HMM PF03433; secretion system effector protein SseB 1489449..1490039 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045402.1 CDS SeHA_C1532 NC_011083.1 1489994 1490509 D identified by match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1489994..1490509 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045403.1 CDS SeHA_C1533 NC_011083.1 1490512 1491966 D identified by match to protein family HMM PF04888; translocation machinery component 1490512..1491966 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045404.1 CDS SeHA_C1534 NC_011083.1 1492066 1492569 D translocation machinery component 1492066..1492569 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045405.1 CDS SeHA_C1535 NC_011083.1 1492572 1492988 D secreted effector protein 1492572..1492988 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045406.1 CDS SeHA_C1536 NC_011083.1 1493046 1493474 D identified by match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1493046..1493474 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045407.1 CDS SeHA_C1537 NC_011083.1 1493490 1494272 D secreted effector protein 1493490..1494272 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045408.2 CDS SeHA_C1538 NC_011083.1 1494269 1494958 D secretion system effector protein SseG 1494269..1494958 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045409.1 CDS eprI NC_011083.1 1495052 1495267 D identified by match to protein family HMM PF09392; match to protein family HMM TIGR02105; type III secretion apparatus needle protein 1495052..1495267 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045410.1 CDS SeHA_C1540 NC_011083.1 1495245 1495535 D identified by match to protein family HMM TIGR02498; type III secretion system protein, SsaH family 1495245..1495535 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045411.1 CDS SeHA_C1541 NC_011083.1 1495532 1495795 D identified by match to protein family HMM PF09525; match to protein family HMM TIGR02497; type III secretion system apparatus protein 1495532..1495795 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045412.1 CDS SeHA_C1542 NC_011083.1 1495792 1496541 D identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein, YscJ/HrcJ family 1495792..1496541 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045413.1 CDS SeHA_C1543 NC_011083.1 1496559 1497107 D hypothetical protein 1496559..1497107 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045414.1 CDS SeHA_C1544 NC_011083.1 1497104 1497778 D identified by match to protein family HMM TIGR02499; type III secretion apparatus protein, HrpE/YscL family 1497104..1497778 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045415.1 CDS SeHA_C1545 NC_011083.1 1497795 1498760 D identified by match to protein family HMM PF07018; match to protein family HMM TIGR02511; secretion system apparatus protein SsaL 1497795..1498760 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045416.1 CDS SeHA_C1546 NC_011083.1 1498818 1499186 D secretion system apparatus protein SsaM 1498818..1499186 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045417.1 CDS SeHA_C1547 NC_011083.1 1499171 1501216 D with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1499171..1501216 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045418.1 CDS SeHA_C1548 NC_011083.1 1501206 1502507 D identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546; type III secretion system ATPase 1501206..1502507 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045419.1 CDS SeHA_C1549 NC_011083.1 1502510 1502887 D secretion system apparatus protein SsaO 1502510..1502887 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045420.1 CDS SeHA_C1550 NC_011083.1 1502901 1503242 D secretion system apparatus protein SsaP 1502901..1503242 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045421.1 CDS epaO NC_011083.1 1503223 1504191 D identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551; type III secretion system protein 1503223..1504191 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045422.1 CDS epaP NC_011083.1 1504259 1504906 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1504259..1504906 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045423.2 CDS SeHA_C1553 NC_011083.1 1504903 1505169 D secretion system apparatus protein SsaS 1504903..1505169 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045424.1 CDS epaR NC_011083.1 1505170 1505949 D identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT 1505170..1505949 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045425.1 CDS SeHA_C1555 NC_011083.1 1505946 1507004 D 'member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli'; secretion system apparatus protein SsaU 1505946..1507004 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045426.1 CDS SeHA_C1558 NC_011083.1 1507477 1508850 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(1507477..1508850) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045427.1 CDS ribE NC_011083.1 1509067 1509708 D 'catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine'; riboflavin synthase subunit alpha 1509067..1509708 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045428.1 CDS cfa NC_011083.1 1509750 1510898 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(1509750..1510898) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045429.1 CDS SeHA_C1561 NC_011083.1 1511188 1512393 R uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC complement(1511188..1512393) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045430.1 CDS SeHA_C1562 NC_011083.1 1512506 1513438 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 1512506..1513438 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045431.1 CDS purR NC_011083.1 1513435 1514460 R 'binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers'; DNA-binding transcriptional repressor PurR complement(1513435..1514460) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045432.1 CDS SeHA_C1564 NC_011083.1 1514787 1515119 R hypothetical protein complement(1514787..1515119) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045433.1 CDS SeHA_C1566 NC_011083.1 1515505 1515723 R transposase complement(1515505..1515723) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045434.1 CDS SeHA_C1565 NC_011083.1 1515700 1516404 D identified by match to protein family HMM PF00665; IS26 transposase 1515700..1516404 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045435.1 CDS SeHA_C1567 NC_011083.1 1516438 1517514 R identified by match to protein family HMM PF01526; transposase complement(1516438..1517514) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045436.1 CDS SeHA_C1568 NC_011083.1 1517640 1518254 D identified by match to protein family HMM PF00239; helix-turn-helix, Fis-type 1517640..1518254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045437.1 CDS SeHA_C1569 NC_011083.1 1518591 1519448 D identified by match to protein family HMM PF00665; transposase InsF for insertion sequence IS3A/B/C/D/E/fA 1518591..1519448 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045438.1 CDS strA NC_011083.1 1519450 1520358 D identified by match to protein family HMM PF01636; aminoglycoside resistance protein A 1519450..1520358 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045439.1 CDS strB NC_011083.1 1520349 1521194 D identified by match to protein family HMM PF04655; aminoglycoside resistance protein B 1520349..1521194 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045440.1 CDS SeHA_C1572 NC_011083.1 1521322 1521792 D identified by match to protein family HMM PF00565; hypothetical protein 1521322..1521792 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045441.1 CDS SeHA_C1573 NC_011083.1 1521807 1521956 D identified by glimmer; putative; hypothetical protein 1521807..1521956 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045442.1 CDS SeHA_C1574 NC_011083.1 1522090 1522236 R identified by glimmer; putative; hypothetical protein complement(1522090..1522236) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045443.1 CDS SeHA_C1575 NC_011083.1 1522472 1523689 D identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase 3 1522472..1523689 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045444.1 CDS SeHA_C1576 NC_011083.1 1523686 1524297 R transposase complement(1523686..1524297) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045445.1 CDS SeHA_C1578 NC_011083.1 1524337 1525041 R identified by match to protein family HMM PF00665; IS26 transposase complement(1524337..1525041) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045446.1 CDS SeHA_C1577 NC_011083.1 1525032 1525148 D replication initiator protein 1525032..1525148 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045447.1 CDS SeHA_C1579 NC_011083.1 1525220 1525777 D identified by match to protein family HMM PF00239; match to protein family HMM PF02796; transposon Tn3 resolvase 1525220..1525777 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045448.1 CDS blaT NC_011083.1 1525960 1526820 D identified by match to protein family HMM PF00144; beta-lactamase TEM 1525960..1526820 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045449.1 CDS SeHA_C1581 NC_011083.1 1527527 1528312 D identified by match to protein family HMM PF01695; transposon NTP-binding protein 1527527..1528312 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045450.1 CDS folP NC_011083.1 1529475 1530314 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(1529475..1530314) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045451.1 CDS SeHA_C1584 NC_011083.1 1530308 1530769 R identified by match to protein family HMM PF00893; multidrug efflux protein complement(1530308..1530769) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045452.1 CDS SeHA_C1583 NC_011083.1 1530746 1531450 D identified by match to protein family HMM PF00665; IS26 transposase 1530746..1531450 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045453.1 CDS SeHA_C1585 NC_011083.1 1532241 1533230 D identified by match to protein family HMM PF00004; AAA ATPase, central domain-containing protein 1532241..1533230 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045454.1 CDS SeHA_C1586 NC_011083.1 1533251 1535794 D hypothetical protein 1533251..1535794 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045455.1 CDS SeHA_C1587 NC_011083.1 1536740 1537705 D identified by match to protein family HMM PF00589; phage integrase family protein 1536740..1537705 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045456.1 CDS SeHA_C1588 NC_011083.1 1537818 1537937 R identified by glimmer; putative; hypothetical protein complement(1537818..1537937) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045457.1 CDS SeHA_C1589 NC_011083.1 1538412 1538549 R identified by glimmer; putative; hypothetical protein complement(1538412..1538549) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045458.1 CDS SeHA_C1590 NC_011083.1 1539155 1539430 D hypothetical protein 1539155..1539430 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045459.1 CDS SeHA_C1591 NC_011083.1 1539796 1540233 D identified by glimmer; putative; hypothetical protein 1539796..1540233 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045460.1 CDS SeHA_C1592 NC_011083.1 1540739 1543324 R identified by match to protein family HMM PF00270; match to protein family HMM PF04851; helicase c2 complement(1540739..1543324) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045461.1 CDS SeHA_C1593 NC_011083.1 1543589 1544455 R hypothetical protein complement(1543589..1544455) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045462.1 CDS SeHA_C1594 NC_011083.1 1544664 1548101 D identified by match to protein family HMM PF07916; sex pilus assembly 1544664..1548101 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045463.1 CDS SeHA_C1595 NC_011083.1 1548505 1548684 R identified by glimmer; putative; hypothetical protein complement(1548505..1548684) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045464.1 CDS SeHA_C1596 NC_011083.1 1548937 1549125 D identified by glimmer; putative; hypothetical protein 1548937..1549125 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045465.1 CDS SeHA_C1597 NC_011083.1 1549128 1549670 D regulator protein 1549128..1549670 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045466.1 CDS SeHA_C1598 NC_011083.1 1549757 1552492 D TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 1549757..1552492 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045467.1 CDS SeHA_C1599 NC_011083.1 1553107 1554348 D identified by match to protein family HMM PF03090; match to protein family HMM PF08708; replication protein A 1553107..1554348 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045468.1 CDS SeHA_C1600 NC_011083.1 1554848 1556062 R identified by match to protein family HMM PF00589; phage integrase family protein complement(1554848..1556062) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045469.1 CDS SeHA_C1601 NC_011083.1 1556533 1557114 R SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase complement(1556533..1557114) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045470.1 CDS SeHA_C1602 NC_011083.1 1557241 1558062 R identified by match to protein family HMM PF00877; NlpC/P60 family protein complement(1557241..1558062) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045471.1 CDS SeHA_C1603 NC_011083.1 1558397 1558744 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; hypothetical protein 1558397..1558744 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045472.1 CDS rnt NC_011083.1 1558822 1559469 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1558822..1559469) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045473.1 CDS gloA NC_011083.1 1559570 1559977 R Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I complement(1559570..1559977) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045474.1 CDS SeHA_C1606 NC_011083.1 1560046 1561143 R FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase complement(1560046..1561143) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045475.1 CDS SeHA_C1607 NC_011083.1 1561202 1561801 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1561202..1561801) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045476.1 CDS SeHA_C1608 NC_011083.1 1561991 1562143 D hypothetical protein 1561991..1562143 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045477.1 CDS SeHA_C1609 NC_011083.1 1562194 1563090 D identified by match to protein family HMM PF00248; oxidoreductase YdhF 1562194..1563090 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045478.1 CDS sodC NC_011083.1 1563170 1563691 D SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1563170..1563691 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045479.1 CDS SeHA_C1611 NC_011083.1 1563667 1565706 R identified by match to protein family HMM PF04632; fusaric acid resistance domain-containing protein complement(1563667..1565706) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045480.1 CDS SeHA_C1612 NC_011083.1 1565706 1566566 R identified by match to protein family HMM PF00529; P-hydroxybenzoic acid efflux pump subunit AaeA complement(1565706..1566566) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045481.1 CDS SeHA_C1613 NC_011083.1 1566569 1566760 R identified by match to protein family HMM PF07869; hypothetical protein complement(1566569..1566760) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045482.1 CDS SeHA_C1614 NC_011083.1 1567000 1567440 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1567000..1567440 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045483.1 CDS SeHA_C1615 NC_011083.1 1567487 1567954 R identified by match to protein family HMM PF05433; outer membrane lipoprotein pcp complement(1567487..1567954) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045484.1 CDS anmK NC_011083.1 1568226 1569347 D 'catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling'; anhydro-N-acetylmuramic acid kinase 1568226..1569347 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045485.1 CDS SeHA_C1617 NC_011083.1 1569441 1569764 D MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1569441..1569764 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045486.1 CDS pdxH NC_011083.1 1569823 1570479 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1569823..1570479 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045487.1 CDS tyrS NC_011083.1 1570606 1571880 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1570606..1571880 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045488.1 CDS SeHA_C1620 NC_011083.1 1571940 1572800 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1571940..1572800 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045489.1 CDS gst NC_011083.1 1572859 1573464 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathionine S-transferase complement(1572859..1573464) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045490.1 CDS tppB NC_011083.1 1573569 1575074 R mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; tripeptide transporter permease complement(1573569..1575074) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045491.1 CDS nth NC_011083.1 1575676 1576311 R 'DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines'; endonuclease III complement(1575676..1576311) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045492.1 CDS SeHA_C1624 NC_011083.1 1576311 1577003 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(1576311..1577003) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045493.1 CDS SeHA_C1625 NC_011083.1 1577006 1577626 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(1577006..1577626) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045494.1 CDS rnfD NC_011083.1 1577630 1578688 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD complement(1577630..1578688) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045495.1 CDS SeHA_C1627 NC_011083.1 1578689 1580896 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(1578689..1580896) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045496.1 CDS rnfB NC_011083.1 1580889 1581467 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(1580889..1581467) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045497.1 CDS rnfA NC_011083.1 1581467 1582048 R identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943; Na(+)-translocating NADH-quinone reductase subunit E complement(1581467..1582048) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045498.1 CDS SeHA_C1630 NC_011083.1 1582125 1582598 R hypothetical protein complement(1582125..1582598) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045499.1 CDS SeHA_C1631 NC_011083.1 1582654 1582869 R 'YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes'; oriC-binding nucleoid-associated protein complement(1582654..1582869) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045500.1 CDS SeHA_C1632 NC_011083.1 1583501 1584541 D identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase 1583501..1584541 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045501.1 CDS add NC_011083.1 1584615 1585616 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(1584615..1585616) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045502.1 CDS SeHA_C1634 NC_011083.1 1586323 1587831 R identified by match to protein family HMM PF06097; hypothetical protein complement(1586323..1587831) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045503.1 CDS manA NC_011083.1 1587934 1589109 R identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase, class I complement(1587934..1589109) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045504.1 CDS SeHA_C1636 NC_011083.1 1589309 1590955 D identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic 1589309..1590955 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045505.1 CDS fumC NC_011083.1 1591123 1592526 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1591123..1592526 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045506.1 CDS tus NC_011083.1 1592523 1593452 R binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein complement(1592523..1593452) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045507.1 CDS SeHA_C1639 NC_011083.1 1593528 1594829 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein RstB complement(1593528..1594829) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045508.1 CDS SeHA_C1640 NC_011083.1 1594940 1596640 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family complement(1594940..1596640) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045509.1 CDS SeHA_C1641 NC_011083.1 1596799 1597950 R identified by match to protein family HMM PF00267; outer membrane protein N complement(1596799..1597950) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045510.1 CDS SeHA_C1642 NC_011083.1 1598215 1598343 R hypothetical protein complement(1598215..1598343) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045511.1 CDS SeHA_C1643 NC_011083.1 1598430 1599161 R response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA complement(1598430..1599161) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045512.1 CDS SeHA_C1644 NC_011083.1 1599288 1599623 D identified by match to protein family HMM PF06942; GlpM family protein 1599288..1599623 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045513.1 CDS SeHA_C1645 NC_011083.1 1599685 1601067 R identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/ornithine antiporter complement(1599685..1601067) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045514.1 CDS SeHA_C1646 NC_011083.1 1601366 1602310 R identified by match to protein family HMM PF07338; hypothetical protein complement(1601366..1602310) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045515.1 CDS pntA NC_011083.1 1602837 1604366 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1602837..1604366 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045516.1 CDS pntB NC_011083.1 1604377 1605765 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1604377..1605765 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045517.1 CDS tqsA NC_011083.1 1605940 1606974 R transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; transport protein complement(1605940..1606974) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045518.1 CDS SeHA_C1650 NC_011083.1 1607143 1607280 D hypothetical protein 1607143..1607280 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045519.1 CDS SeHA_C1651 NC_011083.1 1607392 1607754 D 'with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS'; multidrug efflux system protein MdtJ 1607392..1607754 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045520.1 CDS SeHA_C1652 NC_011083.1 1607741 1608070 D 'with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS'; multidrug efflux system protein MdtI 1607741..1608070 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045521.1 CDS SeHA_C1653 NC_011083.1 1608105 1608926 R identified by match to protein family HMM PF00089; peptidase S1 and S6 chymotrypsin/Hap complement(1608105..1608926) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045522.1 CDS SeHA_C1654 NC_011083.1 1609026 1609145 R identified by glimmer; putative; hypothetical protein complement(1609026..1609145) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045523.1 CDS SeHA_C1655 NC_011083.1 1609195 1609446 R required for growth and survival under moderately acid conditions; acid shock protein complement(1609195..1609446) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045524.1 CDS SeHA_C1656 NC_011083.1 1609841 1611094 R identified by match to protein family HMM PF07690; inner membrane transport protein YnfM complement(1609841..1611094) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045525.1 CDS SeHA_C1657 NC_011083.1 1611214 1612113 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1611214..1612113 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045526.1 CDS mic NC_011083.1 1612241 1613461 D identified by match to protein family HMM PF00480; transcriptional regulator Mic 1612241..1613461 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045527.1 CDS bioD2 NC_011083.1 1613587 1614282 D 'DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium'; dithiobiotin synthetase 1613587..1614282 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045528.1 CDS SeHA_C1660 NC_011083.1 1614238 1615527 R identified by match to protein family HMM PF00654; voltage-gated ClC-type chloride channel ClcB complement(1614238..1615527) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045529.1 CDS SeHA_C1661 NC_011083.1 1615663 1616811 R identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; choline transport ATP-binding protein OpuBA complement(1615663..1616811) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045530.1 CDS SeHA_C1662 NC_011083.1 1616811 1617458 R identified by match to protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein complement(1616811..1617458) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045531.1 CDS SeHA_C1663 NC_011083.1 1617468 1618370 R identified by match to protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein complement(1617468..1618370) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045532.1 CDS SeHA_C1664 NC_011083.1 1618399 1619109 R identified by match to protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein complement(1618399..1619109) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045533.1 CDS SeHA_C1665 NC_011083.1 1619414 1620028 R 'binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane'; twin-argninine leader-binding protein DmsD complement(1619414..1620028) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045534.1 CDS dmsC NC_011083.1 1620071 1620928 R identified by match to protein family HMM PF04976; dmso reductase anchor subunit complement(1620071..1620928) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045535.1 CDS dmsB_2 NC_011083.1 1620930 1621547 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase, B subunit complement(1620930..1621547) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045536.1 CDS SeHA_C1668 NC_011083.1 1621558 1623993 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A complement(1621558..1623993) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045537.1 CDS SeHA_C1669 NC_011083.1 1624092 1626530 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A complement(1624092..1626530) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045538.1 CDS SeHA_C1670 NC_011083.1 1626687 1626992 R identified by match to protein family HMM PF06649; hypothetical protein complement(1626687..1626992) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045539.1 CDS SeHA_C1671 NC_011083.1 1627099 1627809 D identified by match to protein family HMM PF06788; hypothetical protein 1627099..1627809 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045540.1 CDS speG NC_011083.1 1627850 1628410 R identified by match to protein family HMM PF00583; diamine N-acetyltransferase complement(1627850..1628410) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045541.1 CDS SeHA_C1673 NC_011083.1 1628446 1628787 R identified by match to protein family HMM PF06932; hypothetical protein complement(1628446..1628787) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045542.1 CDS SeHA_C1674 NC_011083.1 1628940 1629266 D identified by match to protein family HMM PF02694; hypothetical protein 1628940..1629266 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045543.1 CDS SeHA_C1675 NC_011083.1 1629388 1630602 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; starvation sensing protein RspA 1629388..1630602 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045544.1 CDS SeHA_C1676 NC_011083.1 1630613 1631632 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; dehydrogenase 1630613..1631632 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045545.1 CDS SeHA_C1677 NC_011083.1 1631725 1633065 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; inner membrane metabolite transport protein YdfJ 1631725..1633065 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045547.1 CDS SeHA_C1678 NC_011083.1 1633209 1634675 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 1633209..1634675 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045548.1 CDS SeHA_C1680 NC_011083.1 1634742 1634945 R identified by match to protein family HMM TIGR03318; selenium-binding protein YdfZ complement(1634742..1634945) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045549.1 CDS SeHA_C1681 NC_011083.1 1635126 1635812 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(1635126..1635812) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045550.1 CDS SeHA_C1682 NC_011083.1 1635942 1636688 R 'NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine'; 3-hydroxy acid dehydrogenase complement(1635942..1636688) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045551.1 CDS SeHA_C1683 NC_011083.1 1636827 1638869 D identified by match to protein family HMM PF01432; dipeptidyl carboxypeptidase II 1636827..1638869 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045552.1 CDS SeHA_C1684 NC_011083.1 1639213 1639395 D hypothetical protein 1639213..1639395 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045553.1 CDS SeHA_C1685 NC_011083.1 1639515 1640042 R identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A complement(1639515..1640042) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045554.1 CDS SeHA_C1686 NC_011083.1 1640469 1640861 D identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein 1640469..1640861 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045555.1 CDS SeHA_C1687 NC_011083.1 1641209 1641331 R hypothetical protein complement(1641209..1641331) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045556.1 CDS SeHA_C1688 NC_011083.1 1641552 1642739 R YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; MFS-type transporter YdeE complement(1641552..1642739) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045557.1 CDS SeHA_C1689 NC_011083.1 1642967 1643869 D identified by match to protein family HMM PF00892; O-acetylserine/cysteine export protein 1642967..1643869 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045558.1 CDS SeHA_C1690 NC_011083.1 1643988 1644230 R hypothetical protein complement(1643988..1644230) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045559.1 CDS SeHA_C1691 NC_011083.1 1644232 1644615 R 'transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF'; DNA-binding transcriptional activator MarA complement(1644232..1644615) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045560.1 CDS marR NC_011083.1 1644635 1645069 R Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR complement(1644635..1645069) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045561.1 CDS SeHA_C1693 NC_011083.1 1645328 1645993 D 'protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function'; multiple drug resistance protein MarC 1645328..1645993 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045562.1 CDS SeHA_C1694 NC_011083.1 1646040 1647230 R identified by match to protein family HMM PF07690; sugar efflux transporter complement(1646040..1647230) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045563.1 CDS SeHA_C1695 NC_011083.1 1647346 1648218 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain complement(1647346..1648218) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045564.1 CDS SeHA_C1696 NC_011083.1 1648321 1649709 D in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase 1648321..1649709 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045565.1 CDS SeHA_C1697 NC_011083.1 1649782 1650708 D catalyzes the formation of glutamate from glutamine; glutaminase 1649782..1650708 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045566.1 CDS SeHA_C1698 NC_011083.1 1650708 1651067 D hypothetical protein 1650708..1651067 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083680.1 CDS SeHA_C1699 NC_011083.1 1651291 1652238 D hypothetical protein 1651291..1652238 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045567.1 CDS SeHA_C1700 NC_011083.1 1652294 1652821 R hypothetical protein complement(1652294..1652821) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045568.1 CDS SeHA_C1701 NC_011083.1 1653553 1654671 D identified by match to protein family HMM PF00267; outer membrane protein N 1653553..1654671 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045569.1 CDS hypA NC_011083.1 1654801 1655142 R identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA complement(1654801..1655142) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045570.1 CDS SeHA_C1703 NC_011083.1 1655155 1656042 R ATP/GTP-binding protein complement(1655155..1656042) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045571.1 CDS SeHA_C1704 NC_011083.1 1656030 1657091 R identified by match to protein family HMM PF00301; match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF2 complement(1656030..1657091) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045572.1 CDS SeHA_C1705 NC_011083.1 1657109 1657519 R identified by match to protein family HMM PF07449; hydrogenase-1 operon protein HyaE2 complement(1657109..1657519) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045573.1 CDS hypC NC_011083.1 1657516 1657815 R identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF complement(1657516..1657815) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045574.1 CDS hybD NC_011083.1 1657815 1658423 R identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; hydrogenase expression/formation protein complement(1657815..1658423) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045575.1 CDS cybH NC_011083.1 1658429 1659172 R identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; Ni/Fe-hydrogenase, B-type cytochrome subunit complement(1658429..1659172) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045576.1 CDS SeHA_C1709 NC_011083.1 1659123 1660925 R identified by match to protein family HMM PF00374; [Ni/Fe] hydrogenase large subunit complement(1659123..1660925) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045577.1 CDS SeHA_C1710 NC_011083.1 1660928 1662031 R identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; uptake hydrogenase small subunit complement(1660928..1662031) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045578.1 CDS SeHA_C1711 NC_011083.1 1662459 1663550 D identified by match to protein family HMM PF02275; choloylglycine hydrolase 1662459..1663550 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045579.1 CDS SeHA_C1712 NC_011083.1 1663716 1664387 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; regulatory protein 1663716..1664387 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045580.1 CDS SeHA_C1713 NC_011083.1 1664446 1665471 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-type alcohol dehydrogenase complement(1664446..1665471) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045581.1 CDS SeHA_C1714 NC_011083.1 1665446 1666732 R identified by match to protein family HMM PF07690; membrane transport protein complement(1665446..1666732) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045582.2 CDS pqaA NC_011083.1 1666909 1668465 R PqaA protein complement(1666909..1668465) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045583.1 CDS SeHA_C1716 NC_011083.1 1668535 1669776 R identified by match to protein family HMM PF07690; major facilitator superfamily transporter complement(1668535..1669776) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045584.1 CDS SeHA_C1717 NC_011083.1 1669766 1671274 R identified by match to protein family HMM PF01494; hypothetical protein complement(1669766..1671274) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045585.1 CDS SeHA_C1718 NC_011083.1 1671319 1671807 D identified by match to protein family HMM PF01047; marR family transcriptional regulator 1671319..1671807 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045586.1 CDS SeHA_C1719 NC_011083.1 1671999 1673072 D S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 1671999..1673072 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045587.1 CDS SeHA_C1720 NC_011083.1 1673130 1673519 R identified by match to protein family HMM PF01042; endoribonuclease L-PSP family protein complement(1673130..1673519) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045588.1 CDS SeHA_C1721 NC_011083.1 1673690 1673974 R identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; stability protein StbE complement(1673690..1673974) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045589.1 CDS SeHA_C1722 NC_011083.1 1673964 1674212 R identified by match to protein family HMM PF02604; stability protein StbD complement(1673964..1674212) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045590.1 CDS SeHA_C1723 NC_011083.1 1674569 1674901 D identified by match to protein family HMM PF07377; hypothetical protein 1674569..1674901 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045591.1 CDS SeHA_C1727 NC_011083.1 1676877 1677086 D hypothetical protein 1676877..1677086 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045592.1 CDS SeHA_C1728 NC_011083.1 1677595 1678503 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1677595..1678503 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045593.1 CDS SeHA_C1729 NC_011083.1 1678677 1679657 D identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 1678677..1679657 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045594.1 CDS SeHA_C1730 NC_011083.1 1680440 1680580 R identified by glimmer; putative; hypothetical protein complement(1680440..1680580) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045595.1 CDS SeHA_C1731 NC_011083.1 1680647 1680802 R identified by glimmer; putative; hypothetical protein complement(1680647..1680802) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045596.1 CDS SeHA_C1732 NC_011083.1 1680981 1681988 D identified by match to protein family HMM PF00532; HTH-type transcriptional regulator GalR 1680981..1681988 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045597.1 CDS nhaC NC_011083.1 1682132 1683583 D identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC 1682132..1683583 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045598.1 CDS SeHA_C1734 NC_011083.1 1683596 1684798 D identified by match to protein family HMM PF00155; class I and II aminotransferase 1683596..1684798 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045599.1 CDS glgX NC_011083.1 1684911 1686986 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; glycogen debranching protein GlgX complement(1684911..1686986) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045600.1 CDS treY NC_011083.1 1687043 1689571 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401; malto-oligosyltrehalose synthase complement(1687043..1689571) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045601.1 CDS treZ NC_011083.1 1689568 1691352 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402; malto-oligosyltrehalose trehalohydrolase complement(1689568..1691352) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045602.1 CDS SeHA_C1738 NC_011083.1 1691481 1692266 R identified by match to protein family HMM PF06884; hypothetical protein complement(1691481..1692266) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045603.1 CDS hdeB NC_011083.1 1692409 1692738 R acid-resistance protein complement(1692409..1692738) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045604.1 CDS SeHA_C1740 NC_011083.1 1693088 1693519 R identified by match to protein family HMM PF02566; match to protein family HMM TIGR03562; peroxiredoxin OsmC complement(1693088..1693519) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045605.1 CDS SeHA_C1741 NC_011083.1 1694031 1694246 D biofilm-dependent modulation protein 1694031..1694246 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045606.1 CDS rpsV NC_011083.1 1694341 1694484 D protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1694341..1694484 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045607.1 CDS SeHA_C1743 NC_011083.1 1694661 1696358 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1694661..1696358 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045608.1 CDS SeHA_C1744 NC_011083.1 1696644 1697654 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1696644..1697654 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045609.1 CDS SeHA_C1745 NC_011083.1 1697745 1698401 R 'nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase'; formate dehydrogenase-N subunit gamma complement(1697745..1698401) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045610.1 CDS fdnH NC_011083.1 1698394 1699278 R nitrate-inducible; identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase iron-sulfur subunit complement(1698394..1699278) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045611.1 CDS SeHA_C1749 NC_011083.1 1702575 1703498 D identified by match to protein family HMM PF00892; hypothetical protein 1702575..1703498 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045612.1 CDS SeHA_C1750 NC_011083.1 1704021 1705109 D identified by match to protein family HMM PF00267; outer membrane porin protein LC 1704021..1705109 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045613.1 CDS SeHA_C1751 NC_011083.1 1705193 1705633 D identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating, GFA 1705193..1705633 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045614.1 CDS SeHA_C1752 NC_011083.1 1705658 1707145 R identified by match to protein family HMM PF07690; methyl viologen resistance protein SmvA complement(1705658..1707145) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045615.1 CDS SeHA_C1753 NC_011083.1 1707263 1707841 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1707263..1707841 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045616.1 CDS SeHA_C1754 NC_011083.1 1708043 1709443 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 2 1708043..1709443 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045617.1 CDS SeHA_C1755 NC_011083.1 1709535 1713275 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase subunit alpha 1709535..1713275 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045618.1 CDS narY NC_011083.1 1713272 1714816 D identified by match to protein family HMM TIGR01660; nitrate reductase 2 subunit beta 1713272..1714816 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045619.1 CDS narW NC_011083.1 1714816 1715511 D identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 2 1714816..1715511 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045620.1 CDS narV NC_011083.1 1715508 1716188 D identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase 2 subunit gamma 1715508..1716188 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045621.1 CDS SeHA_C1759 NC_011083.1 1716294 1717187 D identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; hypothetical protein 1716294..1717187 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045622.1 CDS SeHA_C1760 NC_011083.1 1717223 1718068 R identified by match to protein family HMM PF00797; N-acetyltransferase superfamily protein complement(1717223..1718068) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045623.1 CDS SeHA_C1761 NC_011083.1 1718161 1718316 D identified by glimmer; putative; hypothetical protein 1718161..1718316 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045624.1 CDS SeHA_C1762 NC_011083.1 1718350 1718982 R hypothetical protein complement(1718350..1718982) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045625.1 CDS SeHA_C1763 NC_011083.1 1719495 1720988 D identified by match to protein family HMM PF00324; L-asparagine permease 1719495..1720988 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045626.1 CDS SeHA_C1764 NC_011083.1 1721065 1721286 R identified by match to protein family HMM PF06004; hypothetical protein complement(1721065..1721286) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045627.1 CDS SeHA_C1765 NC_011083.1 1721431 1722492 R hypothetical protein complement(1721431..1722492) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045628.1 CDS SeHA_C1766 NC_011083.1 1722756 1724876 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor yncD 1722756..1724876 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045629.1 CDS SeHA_C1767 NC_011083.1 1724943 1725608 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; DNA-binding transcriptional regulator complement(1724943..1725608) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045630.1 CDS SeHA_C1768 NC_011083.1 1725827 1725949 R identified by glimmer; putative; hypothetical protein complement(1725827..1725949) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045631.1 CDS SeHA_C1769 NC_011083.1 1725942 1726979 R identified by match to protein family HMM PF00107; NADP-dependent oxidoreductase Yncb complement(1725942..1726979) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045632.1 CDS yncA NC_011083.1 1727191 1727706 D identified by match to protein family HMM PF00583; phosphinothricin acetyltransferase 1727191..1727706 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045633.1 CDS SeHA_C1771 NC_011083.1 1727706 1728155 D identified by match to protein family HMM PF04657; hypothetical protein 1727706..1728155 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045634.1 CDS SeHA_C1772 NC_011083.1 1728160 1728393 R hypothetical protein complement(1728160..1728393) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045635.1 CDS SeHA_C1773 NC_011083.1 1728617 1729936 D ssrAB activated gene 1728617..1729936 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045636.1 CDS SeHA_C1774 NC_011083.1 1729941 1732922 D identified by match to protein family HMM PF07520; virulence protein SrfB 1729941..1732922 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045637.1 CDS SeHA_C1775 NC_011083.1 1732919 1735063 D virulence effector protein 1732919..1735063 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045638.1 CDS SeHA_C1776 NC_011083.1 1735108 1735281 R hypothetical protein complement(1735108..1735281) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045639.1 CDS ydcW NC_011083.1 1735680 1737125 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(1735680..1737125) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045640.1 CDS SeHA_C1778 NC_011083.1 1737240 1738664 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; aminotransferase, classes I and II superfamily complement(1737240..1738664) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045641.1 CDS SeHA_C1779 NC_011083.1 1738800 1739729 R identified by match to protein family HMM PF01427; D-alanyl-D-alanine dipeptidase complement(1738800..1739729) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045642.1 CDS sifB NC_011083.1 1740266 1741216 D translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1740266..1741216 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045643.1 CDS SeHA_C1781 NC_011083.1 1741490 1741720 D hypothetical protein 1741490..1741720 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045644.1 CDS SeHA_C1782 NC_011083.1 1741721 1743685 R identified by match to protein family HMM PF01136; peptidase, U32 family complement(1741721..1743685) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045645.1 CDS SeHA_C1783 NC_011083.1 1743764 1744300 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; XRE family transcriptional regulator complement(1743764..1744300) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083681.1 CDS SeHA_C1784 NC_011083.1 1744391 1745569 D benzoate transporter 1744391..1745569 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045646.1 CDS SeHA_C1785 NC_011083.1 1745623 1746291 R hypothetical protein complement(1745623..1746291) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045647.1 CDS tehB NC_011083.1 1746447 1747043 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(1746447..1747043) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045648.1 CDS SeHA_C1787 NC_011083.1 1747030 1748043 R identified by match to protein family HMM PF03595; match to protein family HMM TIGR00816; potassium-tellurite ethidium and proflavin transporter complement(1747030..1748043) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045649.1 CDS SeHA_C1788 NC_011083.1 1748150 1749130 D hypothetical protein 1748150..1749130 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045650.1 CDS SeHA_C1789 NC_011083.1 1749127 1749666 R identified by match to protein family HMM PF00583; ribosomal-protein-L7/L12-serine acetyltransferase complement(1749127..1749666) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045651.1 CDS SeHA_C1790 NC_011083.1 1749883 1751001 D identified by match to protein family HMM PF01546; match to protein family HMM PF05343; sgc region protein SgcX 1749883..1751001 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045652.1 CDS SeHA_C1791 NC_011083.1 1750998 1751279 D identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB 1750998..1751279 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045653.1 CDS SeHA_C1792 NC_011083.1 1751290 1752603 D identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system transporter subunit IIC 1751290..1752603 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045654.1 CDS SeHA_C1793 NC_011083.1 1752617 1753423 D identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259; hypothetical protein 1752617..1753423 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045655.1 CDS SeHA_C1794 NC_011083.1 1753555 1753992 D identified by match to protein family HMM PF00359; PTS system sugar transporter subunit IIA 1753555..1753992 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045656.1 CDS SeHA_C1795 NC_011083.1 1754004 1754636 D identified by match to protein family HMM PF00834; epimerase 1754004..1754636 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045657.1 CDS SeHA_C1796 NC_011083.1 1754646 1755443 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; regulatory protein 1754646..1755443 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045658.1 CDS SeHA_C1797 NC_011083.1 1755443 1755880 D identified by match to protein family HMM PF00583; aminoglycoside 6'-N-acetyltransferase Iz 1755443..1755880 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045659.1 CDS SeHA_C1798 NC_011083.1 1755935 1757137 R identified by match to protein family HMM PF01070; match to protein family HMM PF01180; L-lactate oxidase complement(1755935..1757137) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045660.1 CDS SeHA_C1799 NC_011083.1 1757149 1757715 R identified by match to protein family HMM PF04264; hypothetical protein complement(1757149..1757715) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045661.1 CDS mdoD NC_011083.1 1757920 1759539 R involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D complement(1757920..1759539) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045662.1 CDS SeHA_C1801 NC_011083.1 1759795 1761303 R identified by match to protein family HMM PF00135; carboxylesterase, type B complement(1759795..1761303) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045663.1 CDS SeHA_C1802 NC_011083.1 1761352 1762695 R identified by match to protein family HMM PF07063; hypothetical protein complement(1761352..1762695) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045664.1 CDS SeHA_C1803 NC_011083.1 1762997 1763920 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1762997..1763920 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045665.1 CDS SeHA_C1804 NC_011083.1 1763981 1765588 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein III complement(1763981..1765588) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045666.1 CDS SeHA_C1805 NC_011083.1 1765775 1766893 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(1765775..1766893) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045667.1 CDS SeHA_C1806 NC_011083.1 1766925 1767200 R identified by match to protein family HMM PF02583; hypothetical protein complement(1766925..1767200) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045668.1 CDS SeHA_C1807 NC_011083.1 1767963 1768088 R identified by glimmer; putative; hypothetical protein complement(1767963..1768088) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045669.1 CDS SeHA_C1808 NC_011083.1 1768108 1768263 D identified by glimmer; putative; hypothetical protein 1768108..1768263 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045670.1 CDS SeHA_C1809 NC_011083.1 1768253 1768969 R hypothetical protein complement(1768253..1768969) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045671.1 CDS SeHA_C1810 NC_011083.1 1769395 1770621 D secreted effector protein 1769395..1770621 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045672.1 CDS SeHA_C1811 NC_011083.1 1770742 1771086 R identified by match to protein family HMM PF06961; cyanate transport complement(1770742..1771086) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045673.1 CDS SeHA_C1812 NC_011083.1 1771993 1772754 D identified by match to protein family HMM PF00497; hypothetical protein 1771993..1772754 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045674.1 CDS SeHA_C1813 NC_011083.1 1772761 1773408 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; ABC transporter permease 1772761..1773408 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045675.1 CDS SeHA_C1814 NC_011083.1 1773433 1774164 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1773433..1774164 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045676.1 CDS SeHA_C1815 NC_011083.1 1774161 1774841 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; ABC-type transport system membrane protein 1774161..1774841 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045677.1 CDS SeHA_C1816 NC_011083.1 1774978 1776528 D hypothetical protein 1774978..1776528 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045678.1 CDS SeHA_C1817 NC_011083.1 1776992 1777654 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; type 12 methyltransferase 1776992..1777654 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045679.1 CDS SeHA_C1819 NC_011083.1 1777926 1778456 R B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 complement(1777926..1778456) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045680.1 CDS SeHA_C1820 NC_011083.1 1778573 1779373 R identified by match to protein family HMM PF02698; hypothetical protein complement(1778573..1779373) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045681.1 CDS hrpA NC_011083.1 1779437 1783357 R 'involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain'; ATP-dependent RNA helicase HrpA complement(1779437..1783357) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045682.1 CDS SeHA_C1822 NC_011083.1 1783540 1784145 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1783540..1784145 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045683.1 CDS SeHA_C1823 NC_011083.1 1784142 1784591 R identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating, GFA complement(1784142..1784591) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045684.1 CDS SeHA_C1824 NC_011083.1 1784734 1785057 R identified by match to protein family HMM PF07027; hypothetical protein complement(1784734..1785057) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045685.1 CDS SeHA_C1825 NC_011083.1 1785065 1785256 R hypothetical protein complement(1785065..1785256) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045686.1 CDS SeHA_C1826 NC_011083.1 1785256 1787892 R hypothetical protein complement(1785256..1787892) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045687.1 CDS SeHA_C1827 NC_011083.1 1788132 1789121 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 1788132..1789121 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045688.1 CDS SeHA_C1828 NC_011083.1 1789232 1789642 D identified by match to protein family HMM PF03724; heat-inducible protein 1789232..1789642 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045689.1 CDS SeHA_C1829 NC_011083.1 1789686 1789952 R hypothetical protein complement(1789686..1789952) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045690.1 CDS SeHA_C1830 NC_011083.1 1789991 1790122 R hypothetical protein complement(1789991..1790122) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045691.1 CDS nifJ NC_011083.1 1790228 1793752 D identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 1790228..1793752 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045692.1 CDS SeHA_C1833 NC_011083.1 1793811 1794020 R identified by glimmer; putative; hypothetical protein complement(1793811..1794020) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045693.1 CDS SeHA_C1834 NC_011083.1 1794234 1794668 D identified by match to protein family HMM PF00582; universal stress protein F 1794234..1794668 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045694.1 CDS SeHA_C1835 NC_011083.1 1794718 1795056 R identified by match to protein family HMM PF00893; multidrug transporter EmrE complement(1794718..1795056) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045695.1 CDS SeHA_C1836 NC_011083.1 1795049 1795243 R identified by glimmer; putative; hypothetical protein complement(1795049..1795243) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045696.1 CDS SeHA_C1837 NC_011083.1 1795411 1796346 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1795411..1796346 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045697.1 CDS SeHA_C1838 NC_011083.1 1796390 1797763 R 'exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA'; ATP-dependent RNA helicase DbpA complement(1796390..1797763) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045698.1 CDS zntB NC_011083.1 1798250 1799233 R identified by match to protein family HMM PF01544; zinc transporter complement(1798250..1799233) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045699.1 CDS SeHA_C1841 NC_011083.1 1799379 1800491 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(1799379..1800491) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045700.1 CDS SeHA_C1842 NC_011083.1 1800784 1800963 R identified by glimmer; putative; hypothetical protein complement(1800784..1800963) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045701.1 CDS SeHA_C1843 NC_011083.1 1800944 1801507 R identified by match to protein family HMM PF01713; Smr protein/MutS2 complement(1800944..1801507) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045702.1 CDS SeHA_C1844 NC_011083.1 1801765 1802280 D identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1801765..1802280 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045703.1 CDS fnr NC_011083.1 1802476 1803228 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1802476..1803228 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045704.1 CDS uspE NC_011083.1 1803379 1804326 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1803379..1804326 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045705.1 CDS SeHA_C1847 NC_011083.1 1804381 1804635 R hypothetical protein complement(1804381..1804635) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045706.1 CDS SeHA_C1848 NC_011083.1 1804874 1805905 D identified by match to protein family HMM PF00924; MscS family hypothetical protein 1804874..1805905 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045707.1 CDS SeHA_C1849 NC_011083.1 1805987 1806589 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; Cro/CI family transcriptional regulator complement(1805987..1806589) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045708.1 CDS SeHA_C1850 NC_011083.1 1806633 1807319 D identified by match to protein family HMM PF03483; B3/4 domain-containing protein 1806633..1807319 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045709.1 CDS SeHA_C1851 NC_011083.1 1807347 1807685 D hypothetical protein 1807347..1807685 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045710.1 CDS SeHA_C1852 NC_011083.1 1807792 1808310 R thiol peroxidase complement(1807792..1808310) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045711.1 CDS SeHA_C1853 NC_011083.1 1808313 1809149 R hypothetical protein complement(1808313..1809149) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045712.1 CDS SeHA_C1854 NC_011083.1 1809176 1811158 R hypothetical protein complement(1809176..1811158) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045713.1 CDS SeHA_C1855 NC_011083.1 1811233 1812078 R hypothetical protein complement(1811233..1812078) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045714.1 CDS SeHA_C1856 NC_011083.1 1812276 1813256 D identified by match to protein family HMM PF01609; IS5 transposase 1812276..1813256 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045715.1 CDS SeHA_C1857 NC_011083.1 1813454 1814563 D hypothetical protein 1813454..1814563 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045716.2 CDS SeHA_C1858 NC_011083.1 1814777 1815013 R identified by match to protein family HMM PF06004; hypothetical protein complement(1814777..1815013) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045717.1 CDS SeHA_C1859 NC_011083.1 1815142 1815732 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1815142..1815732) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045718.1 CDS SeHA_C1860 NC_011083.1 1815810 1816523 D identified by match to protein family HMM PF00106; oxidoreductase 1815810..1816523 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045719.1 CDS SeHA_C1861 NC_011083.1 1816614 1817483 R identified by match to protein family HMM PF00248; 2,5-diketo-D-gluconic acid reductase A complement(1816614..1817483) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045720.1 CDS SeHA_C1862 NC_011083.1 1817674 1817799 R identified by glimmer; putative; hypothetical protein complement(1817674..1817799) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045721.1 CDS SeHA_C1863 NC_011083.1 1817760 1818665 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; regulatory protein LysR complement(1817760..1818665) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045722.1 CDS SeHA_C1864 NC_011083.1 1818784 1819713 D identified by match to protein family HMM PF05368; isoflavone reductase 1818784..1819713 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045723.1 CDS mppA NC_011083.1 1819810 1821423 R identified by match to protein family HMM PF00496; periplasmic murein peptide-binding protein complement(1819810..1821423) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045724.1 CDS SeHA_C1866 NC_011083.1 1821613 1822341 D identified by match to protein family HMM PF00246; murein peptide amidase A 1821613..1822341 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045725.1 CDS SeHA_C1867 NC_011083.1 1822316 1823281 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase / muconate lactonizing enzyme, N- domain-containing protein complement(1822316..1823281) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045726.1 CDS tpx NC_011083.1 1823397 1823903 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1823397..1823903 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045727.1 CDS SeHA_C1869 NC_011083.1 1823993 1825534 R regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR complement(1823993..1825534) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045728.1 CDS SeHA_C1870 NC_011083.1 1825682 1826743 R identified by match to protein family HMM PF05128; match to protein family HMM TIGR01620; hypothetical protein complement(1825682..1826743) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045729.1 CDS SeHA_C1871 NC_011083.1 1826740 1828137 R identified by match to protein family HMM PF04317; hypothetical protein complement(1826740..1828137) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045730.1 CDS SeHA_C1872 NC_011083.1 1828286 1828597 R rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase complement(1828286..1828597) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045731.1 CDS pspD NC_011083.1 1828676 1828894 R identified by match to protein family HMM PF09584; match to protein family HMM TIGR02979; peripheral inner membrane phage-shock protein complement(1828676..1828894) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045732.1 CDS pspC NC_011083.1 1828917 1829276 R 'with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock'; DNA-binding transcriptional activator PspC complement(1828917..1829276) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045733.1 CDS pspB NC_011083.1 1829276 1829500 R 'acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding'; phage shock protein B complement(1829276..1829500) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045734.1 CDS pspA NC_011083.1 1829560 1830228 R involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA complement(1829560..1830228) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045735.1 CDS pspF NC_011083.1 1830384 1831379 D 'transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor'; phage shock protein operon transcriptional activator 1830384..1831379 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045736.1 CDS SeHA_C1878 NC_011083.1 1831467 1833140 D identified by match to protein family HMM PF00496; peptide transport periplasmic protein SapA 1831467..1833140 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045737.1 CDS sapB NC_011083.1 1833137 1834102 D identified by match to protein family HMM PF00528; peptide ABC transporter permease SapB 1833137..1834102 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045738.1 CDS sapC NC_011083.1 1834089 1834979 D identified by match to protein family HMM PF00528; peptide ABC transporter permease SapC 1834089..1834979 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045739.1 CDS sapD NC_011083.1 1834979 1835971 D identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein SapD 1834979..1835971 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045740.1 CDS sapF NC_011083.1 1835973 1836779 D identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein SapF 1835973..1836779 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045741.1 CDS SeHA_C1883 NC_011083.1 1836795 1837502 R hypothetical protein complement(1836795..1837502) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045742.2 CDS SeHA_C1884 NC_011083.1 1837969 1839342 R hypothetical protein complement(1837969..1839342) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045743.1 CDS fabI NC_011083.1 1839947 1840735 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1839947..1840735 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083682.1 CDS SeHA_C1886 NC_011083.1 1840935 1842068 D hypothetical protein 1840935..1842068 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045744.1 CDS rnb NC_011083.1 1842157 1844091 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1842157..1844091 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045745.1 CDS SeHA_C1888 NC_011083.1 1844344 1846335 D c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1844344..1846335 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045746.1 CDS SeHA_C1889 NC_011083.1 1846457 1846636 D hypothetical protein 1846457..1846636 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045747.1 CDS SeHA_C1890 NC_011083.1 1846723 1847475 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 1846723..1847475 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045748.1 CDS SeHA_C1891 NC_011083.1 1847734 1847952 D lipoprotein 1847734..1847952 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045749.1 CDS SeHA_C1892 NC_011083.1 1848072 1848398 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1848072..1848398) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045750.1 CDS pyrF NC_011083.1 1848398 1849195 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1848398..1849195) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045751.1 CDS SeHA_C1893 NC_011083.1 1849151 1849276 D identified by glimmer; putative; hypothetical protein 1849151..1849276 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045752.1 CDS SeHA_C1895 NC_011083.1 1849326 1850495 R identified by match to protein family HMM PF07719; hypothetical protein complement(1849326..1850495) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045753.1 CDS SeHA_C1896 NC_011083.1 1850502 1850810 R identified by match to protein family HMM PF06305; hypothetical protein complement(1850502..1850810) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045754.1 CDS SeHA_C1897 NC_011083.1 1850960 1851724 R identified by match to protein family HMM PF01569; phosphatidylglycerophosphatase B complement(1850960..1851724) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045755.2 CDS ribA NC_011083.1 1851920 1852510 D 'catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate'; GTP cyclohydrolase II 1851920..1852510 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045756.1 CDS acnA NC_011083.1 1852566 1855241 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1852566..1855241) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045757.1 CDS SeHA_C1900 NC_011083.1 1855626 1855796 R hypothetical protein complement(1855626..1855796) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045758.1 CDS SeHA_C1901 NC_011083.1 1855797 1855925 R hypothetical protein complement(1855797..1855925) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045759.1 CDS cysB NC_011083.1 1856218 1857192 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(1856218..1857192) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045760.1 CDS SeHA_C1903 NC_011083.1 1857148 1857312 D identified by glimmer; putative; hypothetical protein 1857148..1857312 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045761.1 CDS topA NC_011083.1 1857603 1860200 R 'catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity'; DNA topoisomerase I complement(1857603..1860200) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045762.1 CDS SeHA_C1905 NC_011083.1 1860603 1860854 D hypothetical protein 1860603..1860854 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045763.1 CDS SeHA_C1906 NC_011083.1 1860896 1861942 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(1860896..1861942) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045764.1 CDS SeHA_C1907 NC_011083.1 1862180 1862941 D identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 1862180..1862941 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045765.1 CDS cobO NC_011083.1 1862938 1863528 D 'catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide'; cob(I)yrinic acid a,c-diamide adenosyltransferase 1862938..1863528 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045766.1 CDS rluB NC_011083.1 1863615 1864490 R catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B complement(1863615..1864490) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045767.1 CDS SeHA_C1910 NC_011083.1 1864591 1865211 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; hypothetical protein complement(1864591..1865211) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045768.1 CDS SeHA_C1911 NC_011083.1 1865219 1866067 R identified by match to protein family HMM PF02811; phosphoesterase complement(1865219..1866067) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045769.1 CDS trpE NC_011083.1 1866361 1867923 D 'with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine'; anthranilate synthase component I 1866361..1867923 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045770.1 CDS trpD NC_011083.1 1867923 1869518 D bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1867923..1869518 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045771.1 CDS SeHA_C1915 NC_011083.1 1869522 1870880 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1869522..1870880 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045772.1 CDS trpB NC_011083.1 1870890 1872083 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1870890..1872083 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045773.1 CDS trpA NC_011083.1 1872083 1872889 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1872083..1872889 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045774.1 CDS SeHA_C1918 NC_011083.1 1873368 1873550 D hypothetical protein 1873368..1873550 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045775.1 CDS SeHA_C1919 NC_011083.1 1873640 1874143 D identified by match to protein family HMM PF05974; hypothetical protein 1873640..1874143 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045776.1 CDS SeHA_C1920 NC_011083.1 1874217 1874723 D identified by match to protein family HMM PF05974; hypothetical protein 1874217..1874723 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045777.1 CDS SeHA_C1921 NC_011083.1 1874743 1875621 D identified by match to protein family HMM PF05067; catalase 1874743..1875621 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045778.1 CDS SeHA_C1922 NC_011083.1 1875703 1876341 R receptor for colicin S4; outer membrane protein W complement(1875703..1876341) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045779.1 CDS SeHA_C1923 NC_011083.1 1876679 1877083 D identified by match to protein family HMM PF03692; ferredoxin 1876679..1877083 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045780.1 CDS SeHA_C1924 NC_011083.1 1877109 1877852 D identified by match to protein family HMM PF06790; hypothetical protein 1877109..1877852 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045781.1 CDS ispZ NC_011083.1 1877909 1878448 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1877909..1878448 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045782.1 CDS SeHA_C1926 NC_011083.1 1878618 1879010 D YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1878618..1879010 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045783.1 CDS SeHA_C1927 NC_011083.1 1879069 1879791 R 'membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins'; transporter complement(1879069..1879791) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045784.1 CDS SeHA_C1928 NC_011083.1 1880015 1880311 D 'unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity'; YciI-like protein 1880015..1880311 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045785.1 CDS SeHA_C1929 NC_011083.1 1880355 1880528 R hypothetical protein complement(1880355..1880528) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045786.1 CDS cls NC_011083.1 1880671 1882131 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1880671..1882131 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045787.1 CDS SeHA_C1932 NC_011083.1 1882542 1883378 R identified by match to protein family HMM PF00520; match to protein family HMM PF07885; Ion transport protein complement(1882542..1883378) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045788.1 CDS oppF NC_011083.1 1883426 1884430 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein OppF complement(1883426..1884430) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045789.1 CDS oppD NC_011083.1 1884427 1885434 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein complement(1884427..1885434) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045790.1 CDS oppC NC_011083.1 1885446 1886354 R identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease OppC complement(1885446..1886354) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045791.1 CDS oppB NC_011083.1 1886369 1887289 R identified by match to protein family HMM PF00528; oligopeptide transporter permease complement(1886369..1887289) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045792.1 CDS SeHA_C1937 NC_011083.1 1887412 1889043 R identified by match to protein family HMM PF00496; periplasmic oligopeptide-binding protein complement(1887412..1889043) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045793.1 CDS SeHA_C1938 NC_011083.1 1889808 1890455 R identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; hypothetical protein complement(1889808..1890455) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045794.1 CDS adhE NC_011083.1 1890932 1893610 D identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1890932..1893610 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045795.1 CDS tdk NC_011083.1 1893807 1894424 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(1893807..1894424) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045796.1 CDS SeHA_C1941 NC_011083.1 1895087 1895500 D identified by match to protein family HMM PF00816; global DNA-binding transcriptional dual regulator H-NS 1895087..1895500 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045797.1 CDS galU NC_011083.1 1895632 1896540 R 'together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose'; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(1895632..1896540) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045798.1 CDS SeHA_C1943 NC_011083.1 1896743 1897756 R identified by match to protein family HMM PF00072; response regulator of RpoS complement(1896743..1897756) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045799.1 CDS SeHA_C1944 NC_011083.1 1897847 1898752 R identified by match to protein family HMM PF01734; hypothetical protein complement(1897847..1898752) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045800.1 CDS SeHA_C1945 NC_011083.1 1898815 1899321 D identified by match to protein family HMM PF02810; hypothetical protein 1898815..1899321 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045801.1 CDS purU NC_011083.1 1899372 1900214 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1899372..1900214 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045802.1 CDS SeHA_C1954 NC_011083.1 1901530 1903059 R identified by match to protein family HMM PF08238; hypothetical protein complement(1901530..1903059) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045803.1 CDS SeHA_C1955 NC_011083.1 1903095 1903259 D hypothetical protein 1903095..1903259 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045804.1 CDS narI NC_011083.1 1903301 1903978 R identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase subunit gamma complement(1903301..1903978) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045805.1 CDS narJ NC_011083.1 1903978 1904688 R identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 1 complement(1903978..1904688) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045806.1 CDS narH NC_011083.1 1904685 1906220 R identified by match to protein family HMM TIGR01660; nitrate reductase 1 subunit beta complement(1904685..1906220) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045807.1 CDS narG NC_011083.1 1906217 1909960 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase 1 subunit alpha complement(1906217..1909960) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045808.1 CDS SeHA_C1960 NC_011083.1 1910348 1911745 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 1 complement(1910348..1911745) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045809.1 CDS SeHA_C1961 NC_011083.1 1912086 1913882 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarX 1912086..1913882 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045810.1 CDS narL NC_011083.1 1913875 1914525 D two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1913875..1914525 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045811.1 CDS SeHA_C1963 NC_011083.1 1914526 1915950 R hypothetical protein complement(1914526..1915950) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045812.1 CDS SeHA_C1964 NC_011083.1 1916127 1916480 D identified by match to protein family HMM PF02635; hypothetical protein 1916127..1916480 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045813.1 CDS chaB NC_011083.1 1916560 1916790 R in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator complement(1916560..1916790) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045814.1 CDS SeHA_C1966 NC_011083.1 1917061 1918161 D identified by match to protein family HMM PF01699; match to protein family HMM TIGR00846; calcium/sodium:proton antiporter 1917061..1918161 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045815.1 CDS kdsA NC_011083.1 1918215 1919069 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1918215..1919069) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045816.1 CDS sirB1 NC_011083.1 1919107 1919916 R transcriptional regulator complement(1919107..1919916) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045817.1 CDS SeHA_C1969 NC_011083.1 1919920 1920297 R identified by match to protein family HMM PF04247; transcriptional regulator complement(1919920..1920297) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045818.1 CDS hemK NC_011083.1 1920306 1921139 R HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1920306..1921139) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045819.1 CDS prfA NC_011083.1 1921139 1922221 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1921139..1922221) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045820.1 CDS hemA NC_011083.1 1922262 1923518 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1922262..1923518) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045821.1 CDS SeHA_C1973 NC_011083.1 1923686 1923814 R identified by glimmer; putative; hypothetical protein complement(1923686..1923814) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045822.1 CDS lolB NC_011083.1 1923832 1924455 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1923832..1924455 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045823.1 CDS ipk NC_011083.1 1924455 1925303 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1924455..1925303 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045824.1 CDS SeHA_C1976 NC_011083.1 1925300 1925470 R identified by glimmer; putative; hypothetical protein complement(1925300..1925470) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045825.1 CDS prs NC_011083.1 1925569 1926516 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1925569..1926516 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045826.1 CDS ychM NC_011083.1 1926641 1928326 D putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 1926641..1928326 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045827.1 CDS SeHA_C1979 NC_011083.1 1928371 1928649 R 'YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function'; hypothetical protein complement(1928371..1928649) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045828.1 CDS pth NC_011083.1 1928925 1929509 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1928925..1929509 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045829.1 CDS engD NC_011083.1 1929626 1930717 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1929626..1930717 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045831.1 CDS SeHA_C1983 NC_011083.1 1930876 1932141 R hypothetical protein complement(1930876..1932141) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045832.2 CDS SeHA_C1984 NC_011083.1 1932636 1933754 D identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; hydrogenase-1 small chain 1932636..1933754 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045833.1 CDS SeHA_C1985 NC_011083.1 1933751 1935544 D involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1933751..1935544 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045834.1 CDS cybH NC_011083.1 1935563 1936294 D identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; hydrogenase 1 b-type cytochrome subunit 1935563..1936294 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045835.1 CDS hybD NC_011083.1 1936291 1936887 D HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1936291..1936887 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045836.1 CDS SeHA_C1988 NC_011083.1 1936877 1937281 D involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1936877..1937281 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045837.1 CDS SeHA_C1989 NC_011083.1 1937278 1938126 D identified by match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF 1937278..1938126 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045838.1 CDS SeHA_C1990 NC_011083.1 1938201 1939745 D identified by match to protein family HMM PF01654; cytochrome D ubiquinol oxidase subunit 1 1938201..1939745 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045839.1 CDS cydB NC_011083.1 1939757 1940893 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 1939757..1940893 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045840.1 CDS SeHA_C1992 NC_011083.1 1941390 1942664 D identified by match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase 1941390..1942664 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045842.1 CDS treA NC_011083.1 1942878 1944587 D periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1942878..1944587 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045843.1 CDS SeHA_C1995 NC_011083.1 1944650 1944904 R identified by match to protein family HMM PF04226; transglycosylase-associated protein complement(1944650..1944904) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045844.1 CDS SeHA_C1996 NC_011083.1 1945073 1945807 D identified by match to protein family HMM PF07238; match to protein family HMM PF07317; hypothetical protein 1945073..1945807 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083683.1 CDS SeHA_C1997 NC_011083.1 1945821 1946432 R membrane-bound lytic murein transglycosylase E complement(1945821..1946432) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045845.1 CDS ldcA NC_011083.1 1946603 1947517 D catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1946603..1947517 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045846.1 CDS SeHA_C1999 NC_011083.1 1947614 1949347 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1947614..1949347 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045847.1 CDS dadX NC_011083.1 1949410 1950480 R 'catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA'; alanine racemase complement(1949410..1950480) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045848.1 CDS SeHA_C2001 NC_011083.1 1950494 1951792 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(1950494..1951792) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045849.1 CDS SeHA_C2002 NC_011083.1 1952115 1953647 D identified by match to protein family HMM PF04293; SpoVR family protein 1952115..1953647 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045850.1 CDS fadR NC_011083.1 1953694 1954413 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(1953694..1954413) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045851.1 CDS nhaB NC_011083.1 1954633 1956177 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1954633..1956177 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045852.1 CDS SeHA_C2005 NC_011083.1 1956319 1956849 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1956319..1956849 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045853.1 CDS SeHA_C2006 NC_011083.1 1956958 1957299 D identified by match to protein family HMM PF09313; tellurite resistance protein TehB 1956958..1957299 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045854.1 CDS SeHA_C2007 NC_011083.1 1957371 1957544 R identified by match to protein family HMM PF08178; hypothetical protein complement(1957371..1957544) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045857.1 CDS SeHA_C2010 NC_011083.1 1958225 1958686 R identified by match to protein family HMM PF03692; hypothetical protein complement(1958225..1958686) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045858.1 CDS SeHA_C2011 NC_011083.1 1958764 1959423 R identified by match to protein family HMM PF01557; hypothetical protein complement(1958764..1959423) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045859.2 CDS SeHA_C2012 NC_011083.1 1959473 1959805 R identified by match to protein family HMM PF05166; hypothetical protein complement(1959473..1959805) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045860.1 CDS minC NC_011083.1 1959892 1960599 D blocks the formation of polar Z-ring septums; septum formation inhibitor 1959892..1960599 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045861.1 CDS minD NC_011083.1 1960623 1961435 D ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1960623..1961435 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045862.1 CDS minE NC_011083.1 1961439 1961705 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1961439..1961705 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045863.1 CDS rnd NC_011083.1 1961827 1962954 R identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D complement(1961827..1962954) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045864.1 CDS SeHA_C2018 NC_011083.1 1963027 1964712 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1963027..1964712) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045865.1 CDS SeHA_C2019 NC_011083.1 1964732 1964938 D hypothetical protein 1964732..1964938 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045866.1 CDS slp NC_011083.1 1964917 1965498 R identified by match to protein family HMM PF03843; match to protein family HMM TIGR00752; outer membrane protein Slp complement(1964917..1965498) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045867.1 CDS SeHA_C2021 NC_011083.1 1965570 1966265 R identified by match to protein family HMM PF00814; M22 peptidase-like protein YeaZ complement(1965570..1966265) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045868.1 CDS SeHA_C2022 NC_011083.1 1966323 1968233 R hypothetical protein complement(1966323..1968233) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045869.1 CDS SeHA_C2023 NC_011083.1 1968364 1968708 D identified by match to protein family HMM PF01042; endoribonuclease L-PSP family protein 1968364..1968708 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045870.1 CDS SeHA_C2024 NC_011083.1 1968714 1968893 R identified by match to protein family HMM PF03701; hypothetical protein complement(1968714..1968893) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045871.1 CDS pabB NC_011083.1 1968974 1970338 D identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; aminodeoxychorismate synthase, component I 1968974..1970338 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045872.1 CDS SeHA_C2026 NC_011083.1 1970342 1970920 D identified by match to protein family HMM PF00293; hypothetical protein 1970342..1970920 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045873.1 CDS SeHA_C2027 NC_011083.1 1971184 1972548 D identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 1971184..1972548 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045874.1 CDS SeHA_C2028 NC_011083.1 1972686 1974287 D identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 1972686..1974287 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045875.1 CDS SeHA_C2029 NC_011083.1 1974309 1975868 R identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741; TerC family/CBS/transporter membrane protein complement(1974309..1975868) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045876.1 CDS manX NC_011083.1 1976341 1977309 D identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; match to protein family HMM TIGR00854; PTS system mannose-specific transporter subunit IIA 1976341..1977309 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045877.1 CDS manY NC_011083.1 1977362 1978162 D identified by match to protein family HMM PF03609; match to protein family HMM TIGR00822; PTS system mannose-specific transporter subunit IIC 1977362..1978162 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045878.1 CDS manZ NC_011083.1 1978175 1979026 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1978175..1979026 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045879.1 CDS SeHA_C2033 NC_011083.1 1979084 1979542 D identified by match to protein family HMM PF06173; hypothetical protein 1979084..1979542 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045880.1 CDS SeHA_C2035 NC_011083.1 1979952 1980518 D identified by match to protein family HMM PF02659; membrane protein YebN 1979952..1980518 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045881.1 CDS rrmA NC_011083.1 1980515 1981324 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A complement(1980515..1981324) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045882.1 CDS SeHA_C2037 NC_011083.1 1981390 1983135 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI complement(1981390..1983135) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045883.1 CDS cspC NC_011083.1 1983355 1983564 R identified by match to protein family HMM PF00313; cold shock-like protein CspC complement(1983355..1983564) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045885.1 CDS SeHA_C2040 NC_011083.1 1984369 1984656 R hypothetical protein complement(1984369..1984656) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045886.1 CDS SeHA_C2041 NC_011083.1 1984727 1984870 R hypothetical protein complement(1984727..1984870) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045887.1 CDS SeHA_C2042 NC_011083.1 1985028 1985267 D hypothetical protein 1985028..1985267 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045888.1 CDS SeHA_C2043 NC_011083.1 1985479 1986270 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator KdgR complement(1985479..1986270) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083684.1 CDS SeHA_C2044 NC_011083.1 1986446 1987819 D major facilitatior transporter 1986446..1987819 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045889.1 CDS SeHA_C2045 NC_011083.1 1987867 1988748 R putative metalloprotease; heat shock protein HtpX complement(1987867..1988748) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045890.1 CDS prc NC_011083.1 1988942 1990990 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(1988942..1990990) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045891.1 CDS proQ NC_011083.1 1991010 1991696 R affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector complement(1991010..1991696) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045892.2 CDS SeHA_C2048 NC_011083.1 1991794 1992378 R identified by match to protein family HMM PF01590; GAF domain-containing protein complement(1991794..1992378) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045893.1 CDS SeHA_C2049 NC_011083.1 1992420 1993703 D identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; hypothetical protein 1992420..1993703 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045894.1 CDS SeHA_C2050 NC_011083.1 1993672 1996305 D identified by match to protein family HMM PF02470; mce-like protein 1993672..1996305 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045895.1 CDS yebU NC_011083.1 1996281 1997822 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1996281..1997822 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045896.1 CDS SeHA_C2052 NC_011083.1 1997794 1997925 D identified by glimmer; putative; hypothetical protein 1997794..1997925 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045897.1 CDS SeHA_C2053 NC_011083.1 1997937 1998176 D identified by match to protein family HMM PF07351; hypothetical protein 1997937..1998176 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045898.1 CDS SeHA_C2054 NC_011083.1 1998344 1998478 D identified by match to protein family HMM PF07358; hypothetical protein 1998344..1998478 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045899.1 CDS pphA NC_011083.1 1998497 1999147 R Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 complement(1998497..1999147) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045900.1 CDS SeHA_C2056 NC_011083.1 1999165 1999338 R identified by glimmer; putative; hypothetical protein complement(1999165..1999338) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045901.1 CDS SeHA_C2057 NC_011083.1 1999371 1999535 R hypothetical protein complement(1999371..1999535) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045902.1 CDS SeHA_C2058 NC_011083.1 1999621 1999746 R hypothetical protein complement(1999621..1999746) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045903.1 CDS SeHA_C2059 NC_011083.1 1999820 2000542 R identified by match to protein family HMM PF05364; match to protein family HMM PF07487; guanine nucleotide exchange factor SopE complement(1999820..2000542) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045904.1 CDS SeHA_C2060 NC_011083.1 2000823 2000954 D identified by glimmer; putative; hypothetical protein 2000823..2000954 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045905.1 CDS SeHA_C2061 NC_011083.1 2001241 2001621 D identified by match to protein family HMM PF07166; hypothetical protein 2001241..2001621 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045906.1 CDS SeHA_C2062 NC_011083.1 2001951 2002427 D hypothetical protein 2001951..2002427 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045907.1 CDS SeHA_C2063 NC_011083.1 2002814 2003251 R acetyltransferase complement(2002814..2003251) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045908.1 CDS SeHA_C2064 NC_011083.1 2003362 2003556 R hypothetical protein complement(2003362..2003556) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045909.1 CDS SeHA_C2065 NC_011083.1 2003779 2003925 D hypothetical protein 2003779..2003925 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045910.1 CDS SeHA_C2066 NC_011083.1 2003963 2004112 R identified by glimmer; putative; hypothetical protein complement(2003963..2004112) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045911.1 CDS SeHA_C2069 NC_011083.1 2005642 2006010 D hypothetical protein 2005642..2006010 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045912.1 CDS SeHA_C2070 NC_011083.1 2005995 2006141 R identified by glimmer; putative; hypothetical protein complement(2005995..2006141) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045913.1 CDS SeHA_C2071 NC_011083.1 2006810 2006938 D identified by glimmer; putative; hypothetical protein 2006810..2006938 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045914.1 CDS SeHA_C2072 NC_011083.1 2007331 2008245 D identified by match to protein family HMM PF00892; hypothetical protein 2007331..2008245 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045915.1 CDS SeHA_C2073 NC_011083.1 2008378 2008536 D hypothetical protein 2008378..2008536 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045916.1 CDS SeHA_C2074 NC_011083.1 2008546 2009160 D hypothetical protein 2008546..2009160 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045917.1 CDS SeHA_C2075 NC_011083.1 2010307 2010432 R arsenical pump membrane protein complement(2010307..2010432) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045918.1 CDS SeHA_C2076 NC_011083.1 2010764 2011744 D identified by match to protein family HMM PF01609; IS5 transposase 2010764..2011744 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045919.1 CDS SeHA_C2077 NC_011083.1 2012498 2012734 R identified by match to protein family HMM PF02413; Tail fiber assembly protein-like protein complement(2012498..2012734) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045920.1 CDS SeHA_C2079 NC_011083.1 2013533 2013796 R identified by match to protein family HMM PF07278; gifsy-2 prophage protein complement(2013533..2013796) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045921.1 CDS SeHA_C2080 NC_011083.1 2014104 2014271 D hypothetical protein 2014104..2014271 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045922.1 CDS SeHA_C2081 NC_011083.1 2014321 2014494 D hypothetical protein 2014321..2014494 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045923.1 CDS SeHA_C2082 NC_011083.1 2014528 2015061 R hypothetical protein complement(2014528..2015061) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045924.1 CDS SeHA_C2083 NC_011083.1 2015376 2016029 D rac prophage; exonuclease VIII, 5' -> 3' specific dsdna exonuclease 2015376..2016029 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045925.1 CDS SeHA_C2084 NC_011083.1 2016089 2016943 D identified by match to protein family HMM PF00589; integrase 2016089..2016943 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045926.1 CDS SeHA_C2087 NC_011083.1 2017317 2017670 R hypothetical protein complement(2017317..2017670) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045927.1 CDS SeHA_C2088 NC_011083.1 2017687 2018562 R identified by match to protein family HMM PF05425; copper resistance protein D complement(2017687..2018562) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045928.1 CDS SeHA_C2089 NC_011083.1 2018563 2018937 R identified by match to protein family HMM PF04234; hypothetical protein complement(2018563..2018937) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045929.1 CDS SeHA_C2090 NC_011083.1 2019075 2019305 D identified by match to protein family HMM PF06440; DNA polymerase III subunit theta 2019075..2019305 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045930.1 CDS SeHA_C2091 NC_011083.1 2019413 2020069 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 2019413..2020069 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045931.1 CDS SeHA_C2092 NC_011083.1 2020093 2020791 D 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 2020093..2020791 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045932.1 CDS SeHA_C2093 NC_011083.1 2020826 2022877 R PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 complement(2020826..2022877) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045933.1 CDS SeHA_C2094 NC_011083.1 2023090 2023749 R identified by match to protein family HMM PF04391; hypothetical protein complement(2023090..2023749) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045934.1 CDS SeHA_C2095 NC_011083.1 2023843 2024196 R secreted protein; unknown function; hypothetical protein complement(2023843..2024196) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045935.1 CDS SeHA_C2096 NC_011083.1 2024264 2024554 R identified by match to protein family HMM PF07130; DNA damage-inducible protein YebG complement(2024264..2024554) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045936.1 CDS purT NC_011083.1 2024685 2025863 D 'non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis'; phosphoribosylglycinamide formyltransferase 2 2024685..2025863 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045937.1 CDS eda NC_011083.1 2025963 2026604 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(2025963..2026604) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045938.1 CDS edd NC_011083.1 2026642 2028453 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(2026642..2028453) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045939.1 CDS zwf NC_011083.1 2028688 2030163 R 'catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate'; glucose-6-phosphate 1-dehydrogenase complement(2028688..2030163) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045940.1 CDS SeHA_C2101 NC_011083.1 2030505 2031374 D 'Represses the expression of the zwf, eda, glp and gap'; DNA-binding transcriptional regulator HexR 2030505..2031374 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045941.1 CDS pykA NC_011083.1 2031498 2032940 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2031498..2032940 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045942.1 CDS msbB NC_011083.1 2033013 2033984 R 'Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA'; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(2033013..2033984) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045943.1 CDS SeHA_C2104 NC_011083.1 2034101 2035420 R identified by match to protein family HMM PF01476; match to protein family HMM PF01551; match to protein family HMM PF04225; match to protein family HMM PF08525; hypothetical protein complement(2034101..2035420) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045944.1 CDS znuA NC_011083.1 2035436 2036380 R involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein complement(2035436..2036380) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045945.1 CDS znuC NC_011083.1 2036459 2037214 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 2036459..2037214 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045946.1 CDS znuB NC_011083.1 2037211 2037996 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 2037211..2037996 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045947.1 CDS ruvB NC_011083.1 2038075 2039085 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2038075..2039085) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045948.1 CDS ruvA NC_011083.1 2039094 2039705 R plays an essential role in ATP-dependent branch migration of the Holliday junction; holliday junction DNA helicase RuvA complement(2039094..2039705) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045949.1 CDS SeHA_C2110 NC_011083.1 2040065 2040757 R hypothetical protein complement(2040065..2040757) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045950.1 CDS SeHA_C2111 NC_011083.1 2040967 2041566 D identified by match to protein family HMM PF06520; hypothetical protein 2040967..2041566 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045951.1 CDS ruvC NC_011083.1 2041568 2042089 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; holliday junction resolvase complement(2041568..2042089) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045952.1 CDS SeHA_C2113 NC_011083.1 2042126 2042866 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(2042126..2042866) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045953.1 CDS ntpA NC_011083.1 2042896 2043348 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(2042896..2043348) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045954.1 CDS aspS NC_011083.1 2043451 2045223 R 'catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes'; aspartyl-tRNA synthetase complement(2043451..2045223) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045955.1 CDS SeHA_C2116 NC_011083.1 2045548 2046114 D identified by match to protein family HMM PF00857; hypothetical protein 2045548..2046114 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045956.1 CDS SeHA_C2117 NC_011083.1 2046111 2046929 D identified by match to protein family HMM PF01904; hypothetical protein 2046111..2046929 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045957.1 CDS SeHA_C2118 NC_011083.1 2046982 2047377 D hypothetical protein 2046982..2047377 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045958.1 CDS SeHA_C2119 NC_011083.1 2047418 2048161 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740; methyltransferase 2047418..2048161 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045959.1 CDS SeHA_C2120 NC_011083.1 2048158 2049129 D identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM TIGR00452; methyltransferase 2048158..2049129 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045960.1 CDS SeHA_C2121 NC_011083.1 2049365 2050111 R identified by match to protein family HMM PF03932; copper homeostasis protein CutC complement(2049365..2050111) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045961.1 CDS SeHA_C2122 NC_011083.1 2050131 2050700 R identified by match to protein family HMM PF06185; hypothetical protein complement(2050131..2050700) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045963.1 CDS argS NC_011083.1 2050937 2052670 D 'catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase'; arginyl-tRNA synthetase 2050937..2052670 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045964.1 CDS mrdA NC_011083.1 2052859 2054730 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 2052859..2054730 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045965.1 CDS SeHA_C2126 NC_011083.1 2054784 2055923 R identified by match to protein family HMM PF07470; glycosyl hydrolase, family 88 complement(2054784..2055923) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045966.1 CDS SeHA_C2127 NC_011083.1 2056160 2056552 R identified by match to protein family HMM PF06366; flagellar protein FlhE complement(2056160..2056552) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045967.1 CDS flhA NC_011083.1 2056552 2058630 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2056552..2058630) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045968.1 CDS flhB NC_011083.1 2058623 2059774 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(2058623..2059774) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045969.1 CDS SeHA_C2130 NC_011083.1 2059968 2060612 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ complement(2059968..2060612) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045970.1 CDS cheY NC_011083.1 2060623 2061012 R 'chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble'; chemotaxis regulatory protein CheY complement(2060623..2061012) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045971.1 CDS cheB NC_011083.1 2061030 2062079 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(2061030..2062079) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045972.1 CDS cheR NC_011083.1 2062076 2062942 R methylates the MCP; chemotaxis methyltransferase CheR complement(2062076..2062942) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045973.1 CDS SeHA_C2134 NC_011083.1 2063103 2064764 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein II complement(2063103..2064764) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045974.1 CDS SeHA_C2135 NC_011083.1 2064826 2064957 D identified by glimmer; putative; hypothetical protein 2064826..2064957 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045975.1 CDS SeHA_C2136 NC_011083.1 2065001 2065504 R identified by match to protein family HMM PF01584; purine-binding chemotaxis protein complement(2065001..2065504) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045976.1 CDS SeHA_C2137 NC_011083.1 2065525 2067534 R chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA complement(2065525..2067534) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045977.1 CDS motB NC_011083.1 2067545 2068474 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(2067545..2068474) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045978.1 CDS motA NC_011083.1 2068471 2069358 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(2068471..2069358) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045979.1 CDS flhC NC_011083.1 2069483 2070061 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC complement(2069483..2070061) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045980.1 CDS flhD NC_011083.1 2070064 2070405 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD complement(2070064..2070405) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045981.1 CDS SeHA_C2142 NC_011083.1 2070627 2070770 R identified by glimmer; putative; hypothetical protein complement(2070627..2070770) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045982.1 CDS SeHA_C2143 NC_011083.1 2071201 2071629 D 'ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress'; universal stress protein UspC 2071201..2071629 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045983.1 CDS otsA NC_011083.1 2071647 2073068 R identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400; trehalose-6-phosphate synthase complement(2071647..2073068) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045984.1 CDS otsB NC_011083.1 2073043 2073846 R biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase complement(2073043..2073846) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045985.1 CDS SeHA_C2146 NC_011083.1 2074479 2075036 R identified by match to protein family HMM PF01965; ThiJ/PfpI domain-containing protein complement(2074479..2075036) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045986.1 CDS SeHA_C2147 NC_011083.1 2075587 2076090 D identified by match to protein family HMM PF00210; ferritin 2075587..2076090 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045987.1 CDS SeHA_C2148 NC_011083.1 2076269 2076907 R identified by match to protein family HMM PF02502; hypothetical protein complement(2076269..2076907) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045988.1 CDS SeHA_C2149 NC_011083.1 2077163 2077498 D hypothetical protein 2077163..2077498 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045989.1 CDS ftnA NC_011083.1 2077738 2078235 D cytoplasmic iron storage protein; ferritin 2077738..2078235 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045990.1 CDS SeHA_C2151 NC_011083.1 2078281 2078520 R hypothetical protein complement(2078281..2078520) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045991.1 CDS SeHA_C2152 NC_011083.1 2078690 2079958 D identified by match to protein family HMM PF01490; match to protein family HMM PF03222; match to protein family HMM TIGR00837; tyrosine-specific transport protein 2078690..2079958 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045992.1 CDS SeHA_C2153 NC_011083.1 2080033 2080698 R identified by match to protein family HMM PF02810; match to protein family HMM TIGR02292; hypothetical protein complement(2080033..2080698) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045993.1 CDS SeHA_C2154 NC_011083.1 2080937 2081263 R glucose-6-phosphate dehydrogenase complement(2080937..2081263) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045994.1 CDS SeHA_C2155 NC_011083.1 2081476 2082912 R identified by match to protein family HMM PF00877; cell wall-associated hydrolase complement(2081476..2082912) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045995.1 CDS SeHA_C2156 NC_011083.1 2083128 2083445 R hypothetical protein complement(2083128..2083445) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045996.1 CDS pgsA NC_011083.1 2084161 2084709 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; phosphatidylglycerophosphate synthetase complement(2084161..2084709) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045997.1 CDS uvrC NC_011083.1 2084766 2086598 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2084766..2086598) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045998.1 CDS uvrY NC_011083.1 2086595 2087251 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(2086595..2087251) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002045999.1 CDS SeHA_C2163 NC_011083.1 2087563 2087718 D hypothetical protein 2087563..2087718 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046000.1 CDS SeHA_C2164 NC_011083.1 2087715 2087939 D hypothetical protein 2087715..2087939 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046001.1 CDS SeHA_C2165 NC_011083.1 2088006 2088728 R regulates genes involved in cell division; DNA-binding transcriptional activator SdiA complement(2088006..2088728) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046002.1 CDS SeHA_C2166 NC_011083.1 2088960 2089712 R identified by match to protein family HMM PF00005; amino-acid ABC transporter ATP-binding protein YecC complement(2088960..2089712) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046003.1 CDS SeHA_C2167 NC_011083.1 2089709 2090377 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; L-cystine transport system permease TcyB complement(2089709..2090377) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046004.1 CDS SeHA_C2168 NC_011083.1 2090398 2091384 R catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase complement(2090398..2091384) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046005.1 CDS fliY NC_011083.1 2091538 2092338 R identified by match to protein family HMM PF00497; cystine transporter subunit complement(2091538..2092338) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083685.1 CDS SeHA_C2170 NC_011083.1 2092485 2093006 R flagellar biosynthesis protein FliZ complement(2092485..2093006) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046006.1 CDS fliA NC_011083.1 2093095 2093784 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(2093095..2093784) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046007.1 CDS SeHA_C2172 NC_011083.1 2094011 2095216 R lysine-N-methylase complement(2094011..2095216) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046008.1 CDS SeHA_C2173 NC_011083.1 2095295 2096776 R 'structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes'; flagellin complement(2095295..2096776) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046009.1 CDS SeHA_C2174 NC_011083.1 2096926 2097054 D identified by glimmer; putative; hypothetical protein 2096926..2097054 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046010.1 CDS fliD NC_011083.1 2097033 2098436 D involved in flagellin assembly; flagellar capping protein 2097033..2098436 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046011.1 CDS fliS NC_011083.1 2098451 2098858 D flagellin specific chaperone; flagellar protein FliS 2098451..2098858 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046012.1 CDS SeHA_C2177 NC_011083.1 2098858 2099226 D binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2098858..2099226 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046013.1 CDS SeHA_C2178 NC_011083.1 2099298 2100782 D 'converts 1,4-alpha-D-glucans to maltodextrin'; alpha-amylase 2099298..2100782 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046014.1 CDS SeHA_C2179 NC_011083.1 2100822 2101235 R hypothetical protein complement(2100822..2101235) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046015.2 CDS SeHA_C2180 NC_011083.1 2101361 2102626 D identified by match to protein family HMM PF04143; inner membrane protein 2101361..2102626 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046016.1 CDS SeHA_C2181 NC_011083.1 2102623 2102856 D identified by match to protein family HMM PF01206; hypothetical protein 2102623..2102856 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046017.1 CDS SeHA_C2182 NC_011083.1 2103154 2103507 D 50S ribosomal protein 2103154..2103507 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046018.1 CDS fliE NC_011083.1 2103628 2103942 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(2103628..2103942) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046019.1 CDS SeHA_C2184 NC_011083.1 2103989 2104138 R hypothetical protein complement(2103989..2104138) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046020.1 CDS fliF NC_011083.1 2104102 2105841 D 'the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod'; flagellar MS-ring protein 2104102..2105841 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046021.1 CDS fliG NC_011083.1 2105834 2106829 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2105834..2106829 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046022.1 CDS fliH NC_011083.1 2106822 2107529 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2106822..2107529 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046023.1 CDS fliI NC_011083.1 2107529 2108899 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2107529..2108899 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046024.1 CDS fliJ NC_011083.1 2108921 2109364 D rod/hook and filament chaperone; flagellar biosynthesis chaperone 2108921..2109364 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046025.1 CDS SeHA_C2190 NC_011083.1 2109361 2110578 D identified by match to protein family HMM PF02120; flagellar hook-length control protein 2109361..2110578 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046026.1 CDS fliL NC_011083.1 2110683 2111150 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2110683..2111150 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046027.1 CDS fliM NC_011083.1 2111155 2112159 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2111155..2112159 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046028.1 CDS fliN NC_011083.1 2112156 2112569 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2112156..2112569 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046029.1 CDS SeHA_C2194 NC_011083.1 2112569 2112946 D 'with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus'; flagellar biosynthesis protein FliO 2112569..2112946 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046030.1 CDS fliP NC_011083.1 2112946 2113683 D 'FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus'; flagellar biosynthesis protein FliP 2112946..2113683 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046031.1 CDS fliQ NC_011083.1 2113693 2113962 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2113693..2113962 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046032.1 CDS fliR NC_011083.1 2113971 2114765 D 'FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus'; flagellar biosynthesis protein FliR 2113971..2114765 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046033.1 CDS SeHA_C2198 NC_011083.1 2114976 2115089 D identified by glimmer; putative; hypothetical protein 2114976..2115089 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046034.1 CDS rcsA NC_011083.1 2115047 2115670 D identified by match to protein family HMM PF00196; colanic acid capsular biosynthesis activation protein A 2115047..2115670 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046035.1 CDS SeHA_C2200 NC_011083.1 2115709 2115903 R hypothetical protein complement(2115709..2115903) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046036.1 CDS SeHA_C2201 NC_011083.1 2116032 2116259 D hypothetical protein 2116032..2116259 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046037.1 CDS SeHA_C2203 NC_011083.1 2116569 2117384 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2116569..2117384 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046038.1 CDS SeHA_C2204 NC_011083.1 2117363 2119075 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; cellulose synthesis regulatory protein complement(2117363..2119075) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046039.1 CDS SeHA_C2205 NC_011083.1 2119502 2120413 R identified by match to protein family HMM PF05661; hypothetical protein complement(2119502..2120413) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046040.1 CDS SeHA_C2206 NC_011083.1 2120589 2121509 D identified by match to protein family HMM PF00892; hypothetical protein 2120589..2121509 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046041.1 CDS SeHA_C2207 NC_011083.1 2121498 2121968 R identified by match to protein family HMM PF03852; match to protein family HMM TIGR00632; very short patch repair protein complement(2121498..2121968) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046042.1 CDS SeHA_C2208 NC_011083.1 2121949 2123379 R identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA cytosine methylase complement(2121949..2123379) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046043.1 CDS SeHA_C2209 NC_011083.1 2123453 2124148 R identified by match to protein family HMM PF01966; hypothetical protein complement(2123453..2124148) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046044.1 CDS SeHA_C2210 NC_011083.1 2124228 2124506 R outer membrane protein N complement(2124228..2124506) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046045.1 CDS SeHA_C2211 NC_011083.1 2124615 2124746 D identified by glimmer; putative; hypothetical protein 2124615..2124746 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046046.1 CDS SeHA_C2212 NC_011083.1 2125190 2126386 D identified by match to protein family HMM PF00267; outer membrane protein N 2125190..2126386 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046047.1 CDS SeHA_C2213 NC_011083.1 2126414 2126533 R identified by glimmer; putative; hypothetical protein complement(2126414..2126533) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046048.1 CDS umuC NC_011083.1 2127510 2128778 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(2127510..2128778) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046049.1 CDS SeHA_C2216 NC_011083.1 2128781 2129200 R binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD complement(2128781..2129200) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046050.1 CDS SeHA_C2217 NC_011083.1 2129327 2129488 R hypothetical protein complement(2129327..2129488) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046051.1 CDS SeHA_C2219 NC_011083.1 2129969 2130766 D identified by match to protein family HMM PF06167; hypothetical protein 2129969..2130766 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046052.1 CDS SeHA_C2223 NC_011083.1 2132076 2132549 D endoprotease 2132076..2132549 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046053.1 CDS SeHA_C2224 NC_011083.1 2132647 2132781 R identified by glimmer; putative; hypothetical protein complement(2132647..2132781) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046054.1 CDS SeHA_C2225 NC_011083.1 2133024 2133722 D branched chain amino acid transport protein 2133024..2133722 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046055.1 CDS SeHA_C2226 NC_011083.1 2133700 2133855 D transposase 2133700..2133855 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046056.1 CDS SeHA_C2227 NC_011083.1 2134065 2136233 D identified by match to protein family HMM PF07661; match to protein family HMM PF08238; hypothetical protein 2134065..2136233 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046057.1 CDS SeHA_C2228 NC_011083.1 2136290 2138020 D hypothetical protein 2136290..2138020 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046058.1 CDS SeHA_C2229 NC_011083.1 2138051 2138185 D hypothetical protein 2138051..2138185 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046059.1 CDS SeHA_C2230 NC_011083.1 2138230 2138403 D hypothetical protein 2138230..2138403 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046060.1 CDS amn NC_011083.1 2138924 2140378 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(2138924..2140378) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046061.1 CDS SeHA_C2232 NC_011083.1 2140463 2140585 D hypothetical protein 2140463..2140585 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046062.1 CDS SeHA_C2233 NC_011083.1 2140574 2140900 R identified by match to protein family HMM PF07377; hypothetical protein complement(2140574..2140900) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083686.1 CDS SeHA_C2235 NC_011083.1 2141993 2143519 R mate efflux family protein complement(2141993..2143519) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046063.1 CDS SeHA_C2237 NC_011083.1 2143911 2144840 R identified by match to protein family HMM PF03734; hypothetical protein complement(2143911..2144840) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046064.1 CDS cobT NC_011083.1 2144918 2145988 R 'catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole'; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2144918..2145988) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046065.1 CDS cobS NC_011083.1 2146015 2146758 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(2146015..2146758) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046066.1 CDS cobU NC_011083.1 2146755 2147300 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase complement(2146755..2147300) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046067.1 CDS cobQ NC_011083.1 2147297 2148817 R 'catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation'; cobyric acid synthase complement(2147297..2148817) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046068.1 CDS cbiO NC_011083.1 2148814 2149629 R with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit complement(2148814..2149629) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046069.1 CDS cbiQ NC_011083.1 2149638 2150315 R identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ complement(2149638..2150315) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046070.1 CDS SeHA_C2244 NC_011083.1 2150302 2150583 R periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN complement(2150302..2150583) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046071.1 CDS cbiM NC_011083.1 2150585 2151322 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(2150585..2151322) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046072.1 CDS cobI NC_011083.1 2151319 2152032 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(2151319..2152032) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046073.1 CDS SeHA_C2247 NC_011083.1 2152029 2152823 R identified by match to protein family HMM PF06180; sirohydrochlorin cobaltochelatase complement(2152029..2152823) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046074.1 CDS cobK NC_011083.1 2152826 2153617 R 'CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6'; cobalt-precorrin-6x reductase complement(2152826..2153617) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046075.1 CDS cobJ NC_011083.1 2153614 2154339 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase complement(2153614..2154339) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046076.1 CDS SeHA_C2250 NC_011083.1 2154339 2155394 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(2154339..2155394) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046077.1 CDS cobM NC_011083.1 2155375 2156148 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase complement(2155375..2156148) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046078.1 CDS SeHA_C2252 NC_011083.1 2156132 2156710 R catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase complement(2156132..2156710) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046079.1 CDS cbiE NC_011083.1 2156700 2157305 R catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase complement(2156700..2157305) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046080.1 CDS cbiD NC_011083.1 2157299 2158438 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2157299..2158438) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046081.1 CDS cbiC NC_011083.1 2158438 2159070 R catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase complement(2158438..2159070) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046082.1 CDS cbiB NC_011083.1 2159081 2160040 R CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein complement(2159081..2160040) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046083.1 CDS cobB NC_011083.1 2160037 2161416 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2160037..2161416) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046084.1 CDS SeHA_C2259 NC_011083.1 2162014 2162925 R identified by match to protein family HMM PF00165; regulatory protein PocR complement(2162014..2162925) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046085.1 CDS SeHA_C2260 NC_011083.1 2163142 2163936 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; propanediol diffusion facilitator complement(2163142..2163936) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046086.1 CDS pduA NC_011083.1 2164461 2164745 D identified by match to protein family HMM PF00936; propanediol utilization protein PduA 2164461..2164745 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046087.1 CDS SeHA_C2262 NC_011083.1 2164742 2165554 D identified by match to protein family HMM PF00936; propanediol utilization protein PduB 2164742..2165554 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046088.1 CDS pduC NC_011083.1 2165573 2167237 D identified by match to protein family HMM PF02286; propanediol utilization dehydratase large subunit 2165573..2167237 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046089.1 CDS SeHA_C2264 NC_011083.1 2167248 2167922 D identified by match to protein family HMM PF02288; propanediol dehydratase medium subunit 2167248..2167922 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046090.1 CDS SeHA_C2265 NC_011083.1 2167937 2168458 D identified by match to protein family HMM PF02287; propanediol dehydratase small subunit 2167937..2168458 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046091.1 CDS SeHA_C2266 NC_011083.1 2168474 2170306 D identified by match to protein family HMM PF08841; glycerol dehydratase reactivation factor large subunit 2168474..2170306 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046092.1 CDS SeHA_C2267 NC_011083.1 2170296 2170646 D propanediol dehydratase reactivation protein 2170296..2170646 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046093.1 CDS SeHA_C2268 NC_011083.1 2170665 2170940 D identified by match to protein family HMM PF00936; propanediol utilization protein PduJ 2170665..2170940 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046094.1 CDS SeHA_C2269 NC_011083.1 2170965 2171426 D identified by match to protein family HMM PF00936; propanediol utilization protein 2170965..2171426 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046095.1 CDS SeHA_C2270 NC_011083.1 2171426 2172058 D identified by match to protein family HMM PF06130; propanediol utilization 2171426..2172058 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046096.1 CDS SeHA_C2271 NC_011083.1 2172055 2172546 D propanediol utilization 2172055..2172546 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046097.1 CDS SeHA_C2272 NC_011083.1 2172550 2172825 D identified by match to protein family HMM PF03319; polyhedral body protein 2172550..2172825 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046098.1 CDS SeHA_C2273 NC_011083.1 2172835 2173845 D identified by match to protein family HMM PF01923; match to protein family HMM PF03928; match to protein family HMM TIGR00636; hypothetical protein 2172835..2173845 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046099.1 CDS SeHA_C2274 NC_011083.1 2173842 2175236 D identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE 2173842..2175236 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046100.1 CDS SeHA_C2275 NC_011083.1 2175248 2176360 D identified by match to protein family HMM PF00465; propanol dehydrogenase 2175248..2176360 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046101.1 CDS SeHA_C2276 NC_011083.1 2176357 2177712 D identified by match to protein family HMM PF01512; polyhedral body protein 2176357..2177712 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046102.1 CDS SeHA_C2277 NC_011083.1 2177715 2178269 D identified by match to protein family HMM PF00936; polyhedral body protein 2177715..2178269 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046103.1 CDS SeHA_C2278 NC_011083.1 2178269 2178619 D identified by match to protein family HMM PF00936; propanediol utilization protein PduU 2178269..2178619 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046104.1 CDS eutP NC_011083.1 2178624 2179076 D identified by match to protein family HMM TIGR02528; ethanolamine utilization protein, EutP 2178624..2179076 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046105.1 CDS ackA NC_011083.1 2179061 2180275 D 'involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol'; propionate kinase 2179061..2180275 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046106.1 CDS SeHA_C2281 NC_011083.1 2180369 2181235 D identified by match to protein family HMM PF00288; match to protein family HMM PF08544; propanediol utilization protein 2180369..2181235 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046107.1 CDS SeHA_C2282 NC_011083.1 2181269 2181604 R identified by match to protein family HMM PF04363; hypothetical protein complement(2181269..2181604) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046108.1 CDS SeHA_C2283 NC_011083.1 2181849 2182907 R hypothetical protein complement(2181849..2182907) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046109.1 CDS SeHA_C2284 NC_011083.1 2183026 2183493 R identified by match to protein family HMM PF06445; DNA gyrase inhibitor complement(2183026..2183493) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046110.1 CDS dacD NC_011083.1 2183644 2184816 R 'removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase complement(2183644..2184816) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046111.1 CDS SeHA_C2286 NC_011083.1 2184940 2185704 R identified by match to protein family HMM PF01292; thiosulfate reductase cytochrome B subunit complement(2184940..2185704) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046112.1 CDS SeHA_C2287 NC_011083.1 2185701 2186279 R identified by match to protein family HMM PF00037; 4Fe-4S binding protein complement(2185701..2186279) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046113.1 CDS SeHA_C2288 NC_011083.1 2186294 2188570 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; thiosulfate reductase complement(2186294..2188570) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046114.1 CDS SeHA_C2289 NC_011083.1 2189189 2191537 D secreted effector protein 2189189..2191537 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046115.1 CDS SeHA_C2290 NC_011083.1 2191741 2191863 R identified by glimmer; putative; hypothetical protein complement(2191741..2191863) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046116.1 CDS sbcB NC_011083.1 2191880 2193310 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2191880..2193310 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046117.1 CDS yeeF NC_011083.1 2193446 2194804 R identified by match to protein family HMM PF00324; amino acid permease complement(2193446..2194804) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046118.1 CDS SeHA_C2292 NC_011083.1 2194779 2194895 D identified by glimmer; putative; hypothetical protein 2194779..2194895 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046119.1 CDS SeHA_C2294 NC_011083.1 2195090 2196004 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein complement(2195090..2196004) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046120.1 CDS SeHA_C2295 NC_011083.1 2196050 2196874 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; hypothetical protein complement(2196050..2196874) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046121.1 CDS hisG NC_011083.1 2197234 2198133 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2197234..2198133 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046122.1 CDS hisD NC_011083.1 2198236 2199540 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2198236..2199540 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046123.1 CDS hisC NC_011083.1 2199537 2200616 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2199537..2200616 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046124.1 CDS hisB NC_011083.1 2200613 2201680 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2200613..2201680 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046125.1 CDS hisH NC_011083.1 2201680 2202270 D 'with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide'; imidazole glycerol phosphate synthase subunit HisH 2201680..2202270 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046126.1 CDS hisA NC_011083.1 2202270 2203007 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2202270..2203007 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046127.1 CDS hisF NC_011083.1 2202989 2203765 D 'catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase'; imidazole glycerol phosphate synthase subunit HisF 2202989..2203765 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046128.1 CDS SeHA_C2304 NC_011083.1 2203759 2204370 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2203759..2204370 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046129.1 CDS SeHA_C2305 NC_011083.1 2204451 2205428 R identified by match to protein family HMM PF02706; chain length determinant protein complement(2204451..2205428) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046130.1 CDS SeHA_C2306 NC_011083.1 2205577 2206743 R identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; udp-glucose 6-dehydrogenase complement(2205577..2206743) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046131.1 CDS gnd NC_011083.1 2206980 2208386 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2206980..2208386) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046132.1 CDS SeHA_C2308 NC_011083.1 2208550 2209980 R identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025; undecaprenyl-phosphate galactose phosphotransferase complement(2208550..2209980) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046133.1 CDS SeHA_C2309 NC_011083.1 2210052 2211485 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase complement(2210052..2211485) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046134.1 CDS SeHA_C2310 NC_011083.1 2211472 2212911 R identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(2211472..2212911) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046135.1 CDS SeHA_C2311 NC_011083.1 2212912 2213856 R identified by match to protein family HMM PF00535; O antigen biosynthesis rhamnosyltransferase complement(2212912..2213856) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046136.1 CDS SeHA_C2312 NC_011083.1 2213857 2214918 R identified by match to protein family HMM PF00534; hypothetical protein complement(2213857..2214918) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046137.1 CDS SeHA_C2313 NC_011083.1 2215238 2216239 R identified by match to protein family HMM PF00535; O antigen biosynthesis abequosyltransferase RfbV complement(2215238..2216239) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046138.1 CDS SeHA_C2314 NC_011083.1 2216244 2217524 R identified by match to protein family HMM PF01943; O-antigen transporter complement(2216244..2217524) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046139.1 CDS SeHA_C2315 NC_011083.1 2217618 2218517 R identified by match to protein family HMM PF01370; CDP-abequose synthase complement(2217618..2218517) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046140.1 CDS SeHA_C2316 NC_011083.1 2218545 2219858 R identified by match to protein family HMM PF01041; lipopolysaccharide biosynthesis protein RfbH complement(2218545..2219858) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046141.1 CDS rfbG NC_011083.1 2219885 2220964 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622; CDP-glucose 4,6-dehydratase complement(2219885..2220964) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046142.1 CDS rfbF NC_011083.1 2220969 2221742 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623; glucose-1-phosphate cytidylyltransferase complement(2220969..2221742) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046143.1 CDS SeHA_C2319 NC_011083.1 2221739 2222731 R 'catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose'; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(2221739..2222731) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046144.1 CDS rfbC NC_011083.1 2222737 2223285 R identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2222737..2223285) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046145.1 CDS rfbA NC_011083.1 2223289 2224173 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase complement(2223289..2224173) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046146.1 CDS rfbD NC_011083.1 2224215 2225114 R 'with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose'; dTDP-4-dehydrorhamnose reductase complement(2224215..2225114) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046147.1 CDS rfbB NC_011083.1 2225114 2226199 R NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose 4,6 dehydratase complement(2225114..2226199) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046148.1 CDS galF NC_011083.1 2226576 2227469 R 'together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose'; UTP--glucose-1-phosphate uridylyltransferase subunit GalF complement(2226576..2227469) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046149.1 CDS wcaM NC_011083.1 2227647 2229050 R WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein complement(2227647..2229050) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046150.1 CDS SeHA_C2326 NC_011083.1 2229061 2230281 R identified by match to protein family HMM PF00534; colanic acid biosynthesis glycosyltransferase WcaL complement(2229061..2230281) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046151.1 CDS SeHA_C2327 NC_011083.1 2230278 2231558 R identified by match to protein family HMM PF04230; pyruvyl transferase complement(2230278..2231558) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046152.1 CDS SeHA_C2328 NC_011083.1 2231580 2233112 R identified by match to protein family HMM PF01943; colanic acid exporter complement(2231580..2233112) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046153.1 CDS SeHA_C2329 NC_011083.1 2233160 2234554 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase complement(2233160..2234554) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046154.1 CDS cpsG NC_011083.1 2234608 2235978 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase complement(2234608..2235978) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046155.1 CDS cpsB NC_011083.1 2236089 2237525 R identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase complement(2236089..2237525) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046156.1 CDS wcaI NC_011083.1 2237528 2238751 R identified by match to protein family HMM PF00534; glycosyl transferase complement(2237528..2238751) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046157.1 CDS nudD NC_011083.1 2238748 2239221 R identified by match to protein family HMM PF00293; GDP-mannose mannosyl hydrolase complement(2238748..2239221) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046158.1 CDS fcl NC_011083.1 2239224 2240189 R identified by match to protein family HMM PF01370; GDP-L-fucose synthetase complement(2239224..2240189) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046159.1 CDS gmd NC_011083.1 2240192 2241313 R identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase complement(2240192..2241313) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046160.1 CDS SeHA_C2336 NC_011083.1 2241337 2241891 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF complement(2241337..2241891) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046161.1 CDS SeHA_C2337 NC_011083.1 2241907 2242653 R identified by match to protein family HMM PF00535; glycosyl transferase complement(2241907..2242653) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046162.1 CDS wcaD NC_011083.1 2242666 2243880 R essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid biosynthesis protein complement(2242666..2243880) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046163.1 CDS SeHA_C2339 NC_011083.1 2243855 2245072 R glycosyl transferase complement(2243855..2245072) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046164.1 CDS SeHA_C2340 NC_011083.1 2245069 2245509 R 'acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium'; colanic acid biosynthesis acetyltransferase WcaB complement(2245069..2245509) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046165.1 CDS SeHA_C2341 NC_011083.1 2245560 2246402 R identified by match to protein family HMM PF00535; glycosyl transferase complement(2245560..2246402) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046166.1 CDS SeHA_C2342 NC_011083.1 2246489 2248648 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase complement(2246489..2248648) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046167.1 CDS wzb NC_011083.1 2248645 2249094 R 'Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis'; tyrosine phosphatase complement(2248645..2249094) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046168.1 CDS SeHA_C2344 NC_011083.1 2249100 2250239 R identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export protein complement(2249100..2250239) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083687.1 CDS SeHA_C2346 NC_011083.1 2250914 2252494 D hypothetical protein 2250914..2252494 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046170.1 CDS SeHA_C2347 NC_011083.1 2252580 2254436 R 'YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs'; assembly protein complement(2252580..2254436) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046171.1 CDS dcd NC_011083.1 2254475 2255056 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2254475..2255056) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046172.1 CDS udk NC_011083.1 2255147 2255788 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2255147..2255788) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046173.1 CDS SeHA_C2350 NC_011083.1 2255864 2256034 R hypothetical protein complement(2255864..2256034) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046174.1 CDS SeHA_C2351 NC_011083.1 2256113 2259109 D identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF05231; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; mase1 domain family protein 2256113..2259109 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046175.1 CDS SeHA_C2352 NC_011083.1 2259077 2259946 R 'inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine'; 3-methyladenine DNA glycosylase complement(2259077..2259946) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046176.1 CDS SeHA_C2353 NC_011083.1 2260080 2261432 D chaperone 2260080..2261432 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046178.1 CDS SeHA_C2356 NC_011083.1 2261873 2263114 D 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtA 2261873..2263114 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046179.1 CDS mdtB NC_011083.1 2263114 2266236 D 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtB 2263114..2266236 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046180.1 CDS mdtC NC_011083.1 2266237 2269317 D 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtC 2266237..2269317 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046181.1 CDS SeHA_C2359 NC_011083.1 2269314 2270726 D identified by match to protein family HMM PF07690; multidrug efflux system protein MdtE 2269314..2270726 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046182.1 CDS SeHA_C2360 NC_011083.1 2270726 2272129 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; signal transduction histidine-protein kinase BaeS 2270726..2272129 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046183.1 CDS SeHA_C2361 NC_011083.1 2272126 2272848 D 'response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport'; DNA-binding transcriptional regulator BaeR 2272126..2272848 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046184.1 CDS SeHA_C2362 NC_011083.1 2273117 2274319 D hypothetical protein 2273117..2274319 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046185.1 CDS SeHA_C2363 NC_011083.1 2274319 2275035 D hypothetical protein 2274319..2275035 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046186.1 CDS SeHA_C2364 NC_011083.1 2275046 2277157 D hypothetical protein 2275046..2277157 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046187.1 CDS SeHA_C2365 NC_011083.1 2277273 2278634 D identified by match to protein family HMM PF01136; peptidase, U32 family 2277273..2278634 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046188.1 CDS SeHA_C2367 NC_011083.1 2279241 2280131 D hypothetical protein 2279241..2280131 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046189.1 CDS SeHA_C2368 NC_011083.1 2280167 2280436 R Tir chaperone complement(2280167..2280436) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046190.1 CDS SeHA_C2369 NC_011083.1 2280705 2281040 R hypothetical protein complement(2280705..2281040) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046193.1 CDS SeHA_C2372 NC_011083.1 2281602 2282501 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2281602..2282501 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083688.1 CDS SeHA_C2373 NC_011083.1 2282554 2283606 R fructose-bisphosphate aldolase complement(2282554..2283606) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046194.1 CDS yegT NC_011083.1 2283815 2285131 D identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside transporter 2283815..2285131 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046195.1 CDS SeHA_C2375 NC_011083.1 2285128 2286132 D identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase family protein 2285128..2286132 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046196.1 CDS SeHA_C2376 NC_011083.1 2286129 2287094 D identified by match to protein family HMM PF00294; kinase, PfkB family 2286129..2287094 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046197.1 CDS SeHA_C2377 NC_011083.1 2287068 2287814 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(2287068..2287814) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046198.1 CDS thiD NC_011083.1 2287850 2288650 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(2287850..2288650) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046199.1 CDS thiM NC_011083.1 2288637 2289434 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(2288637..2289434) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046200.1 CDS SeHA_C2381 NC_011083.1 2289533 2289718 R identified by glimmer; putative; hypothetical protein complement(2289533..2289718) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046201.1 CDS SeHA_C2382 NC_011083.1 2289844 2290158 D hypothetical protein 2289844..2290158 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046202.1 CDS SeHA_C2383 NC_011083.1 2290420 2291427 R hypothetical protein complement(2290420..2291427) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046203.1 CDS SeHA_C2384 NC_011083.1 2291443 2293932 R identified by match to protein family HMM PF00577; fimbrial usher protein complement(2291443..2293932) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046204.1 CDS SeHA_C2385 NC_011083.1 2293946 2294629 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; gram-negative pilus assembly chaperone complement(2293946..2294629) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046205.1 CDS SeHA_C2386 NC_011083.1 2294685 2295215 R identified by match to protein family HMM PF00419; fimbrial protein complement(2294685..2295215) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046206.1 CDS SeHA_C2387 NC_011083.1 2295494 2295775 R hypothetical protein complement(2295494..2295775) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046207.1 CDS SeHA_C2388 NC_011083.1 2296053 2297162 R ATPase complement(2296053..2297162) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046208.1 CDS metG NC_011083.1 2297327 2299360 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2297327..2299360 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046209.1 CDS SeHA_C2390 NC_011083.1 2299601 2300059 D identified by match to protein family HMM PF06998; hypothetical protein 2299601..2300059 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046210.1 CDS SeHA_C2391 NC_011083.1 2300231 2300761 D identified by match to protein family HMM PF06998; hypothetical protein 2300231..2300761 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046211.1 CDS SeHA_C2392 NC_011083.1 2300818 2301285 R identified by match to protein family HMM PF07308; hypothetical protein complement(2300818..2301285) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046212.1 CDS SeHA_C2393 NC_011083.1 2301332 2302051 R unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT complement(2301332..2302051) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046213.1 CDS SeHA_C2394 NC_011083.1 2302048 2303733 R identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase complement(2302048..2303733) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046214.1 CDS SeHA_C2395 NC_011083.1 2303956 2304687 D identified by match to protein family HMM PF00376; merR family transcriptional regulator 2303956..2304687 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046215.1 CDS SeHA_C2396 NC_011083.1 2304835 2305566 R identified by match to protein family HMM PF00528; inner membrane ABC transporter permease YehW complement(2304835..2305566) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046216.1 CDS SeHA_C2397 NC_011083.1 2305550 2306497 R identified by match to protein family HMM PF00005; glycine betaine/carnitine/choline transport ATP-binding protein opuCA complement(2305550..2306497) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046217.1 CDS SeHA_C2398 NC_011083.1 2306490 2307659 R identified by match to protein family HMM PF00528; inner membrane ABC transporter permease YehY complement(2306490..2307659) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046218.1 CDS SeHA_C2399 NC_011083.1 2307663 2308580 R identified by match to protein family HMM PF04069; amine ABC transporter substrate-binding protein complement(2307663..2308580) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046219.1 CDS SeHA_C2400 NC_011083.1 2308761 2311028 R identified by match to protein family HMM PF00933; match to protein family HMM PF01915; beta-glucosidase complement(2308761..2311028) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046220.1 CDS SeHA_C2401 NC_011083.1 2311325 2313055 D 'component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent'; D-lactate dehydrogenase 2311325..2313055 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046221.1 CDS pbpG NC_011083.1 2313113 2314021 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2313113..2314021) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046222.1 CDS SeHA_C2403 NC_011083.1 2314226 2314813 R identified by match to protein family HMM PF06930; hypothetical protein complement(2314226..2314813) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046223.1 CDS SeHA_C2404 NC_011083.1 2314972 2315541 D identified by match to protein family HMM PF09335; hypothetical protein 2314972..2315541 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046224.1 CDS SeHA_C2405 NC_011083.1 2315590 2316372 R identified by match to protein family HMM PF00106; acetoin dehydrogenase complement(2315590..2316372) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046225.1 CDS SeHA_C2406 NC_011083.1 2316417 2317853 R 'may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride'; multidrug resistance outer membrane protein MdtQ complement(2316417..2317853) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046226.1 CDS SeHA_C2407 NC_011083.1 2317904 2318041 R hypothetical protein complement(2317904..2318041) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046227.1 CDS SeHA_C2408 NC_011083.1 2318044 2318241 D hypothetical protein 2318044..2318241 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046228.1 CDS SeHA_C2409 NC_011083.1 2318312 2319250 R identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase C complement(2318312..2319250) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046229.1 CDS SeHA_C2410 NC_011083.1 2319359 2320552 R catalyzes the formation of catechol from salicylate; salicylate hydroxylase complement(2319359..2320552) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046230.1 CDS maiA NC_011083.1 2320567 2321211 R identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262; maleylacetoacetate isomerase complement(2320567..2321211) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046231.1 CDS SeHA_C2412 NC_011083.1 2321220 2321921 R identified by match to protein family HMM PF01557; FAA-hydrolase family protein complement(2321220..2321921) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046232.1 CDS gtdA NC_011083.1 2321937 2322974 R identified by match to protein family HMM PF07883; match to protein family HMM TIGR02272; gentisate 1,2-dioxygenase complement(2321937..2322974) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046233.1 CDS SeHA_C2414 NC_011083.1 2322986 2324344 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; 4-hydroxybenzoate transporter complement(2322986..2324344) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083689.1 CDS SeHA_C2415 NC_011083.1 2324470 2325378 D transcriptional regulator 2324470..2325378 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046234.1 CDS SeHA_C2416 NC_011083.1 2325510 2325908 D identified by match to protein family HMM PF03788; hypothetical protein 2325510..2325908 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046235.1 CDS SeHA_C2417 NC_011083.1 2325905 2326600 D identified by match to protein family HMM PF04172; match to protein family HMM TIGR00659; hypothetical protein 2325905..2326600 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046236.1 CDS cdd NC_011083.1 2326754 2327638 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2326754..2327638 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046237.1 CDS SeHA_C2419 NC_011083.1 2327815 2328534 D identified by match to protein family HMM PF02698; hypothetical protein 2327815..2328534 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046238.1 CDS SeHA_C2420 NC_011083.1 2328537 2328776 D hypothetical protein 2328537..2328776 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046239.1 CDS SeHA_C2421 NC_011083.1 2328981 2330222 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2328981..2330222 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046240.1 CDS SeHA_C2422 NC_011083.1 2330216 2331451 D 'catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines'; dihydropyrimidine dehydrogenase 2330216..2331451 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046241.1 CDS mglC NC_011083.1 2331526 2332536 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein complement(2331526..2332536) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046242.1 CDS SeHA_C2424 NC_011083.1 2332552 2334072 R with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein complement(2332552..2334072) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046243.1 CDS SeHA_C2425 NC_011083.1 2334206 2335204 R identified by match to protein family HMM PF00532; D-galactose-binding periplasmic protein complement(2334206..2335204) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046244.1 CDS SeHA_C2426 NC_011083.1 2335703 2336725 R negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS complement(2335703..2336725) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046245.1 CDS SeHA_C2427 NC_011083.1 2336875 2338017 R identified by match to protein family HMM PF04171; match to protein family HMM PF04235; hypothetical protein complement(2336875..2338017) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046246.1 CDS folE NC_011083.1 2338032 2338700 R 'involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer'; GTP cyclohydrolase I complement(2338032..2338700) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046247.1 CDS fghA NC_011083.1 2339030 2339887 D identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821; S-formylglutathione hydrolase 2339030..2339887 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046248.1 CDS SeHA_C2430 NC_011083.1 2339876 2340265 R identified by match to protein family HMM PF01381; transcriptional regulator complement(2339876..2340265) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046249.1 CDS SeHA_C2431 NC_011083.1 2340270 2341637 R identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase complement(2340270..2341637) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046250.1 CDS serB NC_011083.1 2341854 2342741 D identified by match to protein family HMM PF00702; match to protein family HMM PF06888; match to protein family HMM PF08282; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 2341854..2342741 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046251.1 CDS SeHA_C2433 NC_011083.1 2342774 2344096 D identified by match to protein family HMM PF07690; regulatory protein UhpC 2342774..2344096 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046252.1 CDS SeHA_C2434 NC_011083.1 2344140 2346092 R 'Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein'; colicin I receptor complement(2344140..2346092) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046253.1 CDS SeHA_C2435 NC_011083.1 2346477 2347946 R identified by match to protein family HMM PF00324; lysine transporter complement(2346477..2347946) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046254.1 CDS SeHA_C2436 NC_011083.1 2348136 2348999 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator complement(2348136..2348999) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046255.1 CDS SeHA_C2438 NC_011083.1 2349027 2349146 R hypothetical protein complement(2349027..2349146) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046256.1 CDS SeHA_C2437 NC_011083.1 2349120 2350169 D identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698; hypothetical protein 2349120..2350169 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046257.1 CDS SeHA_C2439 NC_011083.1 2350248 2351105 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2350248..2351105 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046258.1 CDS SeHA_C2440 NC_011083.1 2351170 2352858 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC complement(2351170..2352858) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046259.1 CDS fruK NC_011083.1 2352875 2353813 R 'converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers'; 1-phosphofructokinase complement(2352875..2353813) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046260.1 CDS fruB NC_011083.1 2353813 2354943 R 'phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr'; PTS system fructose-specific transporter subunit IIA/HPr protein complement(2353813..2354943) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046261.1 CDS SeHA_C2443 NC_011083.1 2354964 2355095 D identified by glimmer; putative; hypothetical protein 2354964..2355095 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046262.1 CDS SeHA_C2444 NC_011083.1 2355179 2355301 D identified by glimmer; putative; hypothetical protein 2355179..2355301 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046263.1 CDS SeHA_C2445 NC_011083.1 2355311 2356492 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00899; sugar efflux transporter B 2355311..2356492 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046264.1 CDS SeHA_C2446 NC_011083.1 2356556 2357221 R hypothetical protein complement(2356556..2357221) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046265.1 CDS SeHA_C2447 NC_011083.1 2357223 2357345 R hypothetical protein complement(2357223..2357345) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046266.1 CDS SeHA_C2448 NC_011083.1 2358311 2358883 D 'Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein'; elongation factor P 2358311..2358883 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046267.2 CDS SeHA_C2449 NC_011083.1 2359096 2360082 D identified by match to protein family HMM PF02492; cobalamin biosynthesis protein 2359096..2360082 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046268.1 CDS SeHA_C2450 NC_011083.1 2360085 2360831 D identified by match to protein family HMM PF01569; hypothetical protein 2360085..2360831 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046269.1 CDS spr NC_011083.1 2361245 2361817 D 'by similarity, Spr seems to have peptidase activity; involved in thermoresistance'; outer membrane lipoprotein 2361245..2361817 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046270.1 CDS SeHA_C2452 NC_011083.1 2362143 2363699 D identified by match to protein family HMM PF00563; hypothetical protein 2362143..2363699 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046271.1 CDS SeHA_C2453 NC_011083.1 2363806 2365611 D identified by match to protein family HMM PF00496; extracellular solute-binding protein 2363806..2365611 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046272.1 CDS SeHA_C2454 NC_011083.1 2365621 2366715 D identified by match to protein family HMM PF00528; inner membrane ABC transporter permease YejB 2365621..2366715 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046273.1 CDS SeHA_C2455 NC_011083.1 2366715 2367740 D identified by match to protein family HMM PF00528; inner membrane ABC transporter permease YejE 2366715..2367740 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046274.1 CDS SeHA_C2456 NC_011083.1 2367742 2369331 D identified by match to protein family HMM PF00005; match to protein family HMM PF08352; glutathione import ATP-binding protein GsiA 2367742..2369331 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046275.1 CDS SeHA_C2457 NC_011083.1 2369335 2369679 R hypothetical protein complement(2369335..2369679) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046276.1 CDS bcr NC_011083.1 2370070 2371260 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein complement(2370070..2371260) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046277.1 CDS rsuA NC_011083.1 2371288 2371983 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A complement(2371288..2371983) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046278.1 CDS SeHA_C2460 NC_011083.1 2372135 2373895 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase 2372135..2373895 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046279.1 CDS rplY NC_011083.1 2374020 2374304 D 'the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response'; 50S ribosomal protein L25 2374020..2374304 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046280.1 CDS SeHA_C2462 NC_011083.1 2374413 2375033 R hypothetical protein complement(2374413..2375033) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046281.1 CDS ndpA NC_011083.1 2375061 2376068 R identified by match to protein family HMM PF04245; nucleoid-associated protein NdpA complement(2375061..2376068) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046282.1 CDS SeHA_C2464 NC_011083.1 2376248 2376475 D identified by match to protein family HMM PF07208; hypothetical protein 2376248..2376475 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046283.1 CDS SeHA_C2465 NC_011083.1 2376507 2378267 D identified by match to protein family HMM PF00884; hypothetical protein 2376507..2378267 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046284.2 CDS SeHA_C2467 NC_011083.1 2378548 2379051 R DNA polymerase V subunit complement(2378548..2379051) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046285.2 CDS SeHA_C2468 NC_011083.1 2379079 2379369 D virulence protein 2379079..2379369 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046286.1 CDS SeHA_C2469 NC_011083.1 2379518 2379637 D identified by glimmer; putative; hypothetical protein 2379518..2379637 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046287.2 CDS SeHA_C2471 NC_011083.1 2381593 2382036 R identified by match to protein family HMM PF02413; tail fiber assembly protein complement(2381593..2382036) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046288.1 CDS SeHA_C2472 NC_011083.1 2382414 2382941 R identified by match to protein family HMM PF02413; phage tail fiber assembly protein complement(2382414..2382941) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046289.1 CDS SeHA_C2473 NC_011083.1 2382944 2384185 R hypothetical protein complement(2382944..2384185) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046290.1 CDS SeHA_C2474 NC_011083.1 2384246 2384764 R identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543; phage prohead protease, HK97 family complement(2384246..2384764) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046291.1 CDS SeHA_C2475 NC_011083.1 2384778 2385107 R identified by match to protein family HMM TIGR01594; phage holin, lambda family complement(2384778..2385107) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046292.1 CDS SeHA_C2476 NC_011083.1 2385404 2386735 D identified by match to protein family HMM PF07693; KAP P-loop domain-containing protein 2385404..2386735 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046293.1 CDS SeHA_C2477 NC_011083.1 2387147 2388142 R identified by match to protein family HMM PF06914; hypothetical protein complement(2387147..2388142) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046295.1 CDS SeHA_C2479 NC_011083.1 2388465 2390831 R hypothetical protein complement(2388465..2390831) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046296.1 CDS SeHA_C2480 NC_011083.1 2390926 2391168 D identified by glimmer; putative; hypothetical protein 2390926..2391168 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046297.1 CDS SeHA_C2481 NC_011083.1 2391149 2391268 R identified by glimmer; putative; hypothetical protein complement(2391149..2391268) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046298.1 CDS SeHA_C2483 NC_011083.1 2392420 2392797 D virulence protein MsgA 2392420..2392797 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046299.1 CDS SeHA_C2484 NC_011083.1 2392989 2393546 R identified by match to protein family HMM PF09411; hypothetical protein complement(2392989..2393546) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046300.1 CDS SeHA_C2485 NC_011083.1 2393742 2393888 D identified by glimmer; putative; hypothetical protein 2393742..2393888 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046301.1 CDS SeHA_C2486 NC_011083.1 2394282 2394929 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2394282..2394929 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046302.1 CDS SeHA_C2487 NC_011083.1 2394973 2396016 R identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 complement(2394973..2396016) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046303.1 CDS SeHA_C2488 NC_011083.1 2396013 2396570 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interchange protein DsbE complement(2396013..2396570) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046304.1 CDS ccmF NC_011083.1 2396567 2398498 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF complement(2396567..2398498) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046305.1 CDS SeHA_C2490 NC_011083.1 2398495 2398974 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(2398495..2398974) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046306.1 CDS ccmD NC_011083.1 2398971 2399144 R identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; heme exporter protein CcmD complement(2398971..2399144) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046307.1 CDS SeHA_C2492 NC_011083.1 2399180 2399926 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC superfamily protein complement(2399180..2399926) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046308.1 CDS ccmB NC_011083.1 2399969 2400625 R identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB complement(2399969..2400625) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046309.1 CDS ccmA NC_011083.1 2400625 2401248 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(2400625..2401248) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046310.1 CDS napC NC_011083.1 2401263 2401865 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC complement(2401263..2401865) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046311.1 CDS napB NC_011083.1 2401875 2402324 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit complement(2401875..2402324) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046312.1 CDS napH NC_011083.1 2402440 2403309 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(2402440..2403309) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046313.1 CDS napG NC_011083.1 2403296 2403991 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(2403296..2403991) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046314.1 CDS napA NC_011083.1 2403998 2406484 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(2403998..2406484) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046315.1 CDS napD NC_011083.1 2406481 2406744 R identified by match to protein family HMM PF03927; assembly protein for periplasmic nitrate reductase complement(2406481..2406744) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046316.1 CDS SeHA_C2501 NC_011083.1 2406734 2406871 R identified by match to protein family HMM PF00037; ferredoxin-type protein NapF complement(2406734..2406871) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046317.1 CDS SeHA_C2502 NC_011083.1 2407627 2408133 D 'serine protease inhibitor, inhibits trypsin and other proteases'; ecotin 2407627..2408133 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046318.1 CDS SeHA_C2503 NC_011083.1 2408325 2409968 R efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component complement(2408325..2409968) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046319.1 CDS SeHA_C2504 NC_011083.1 2410044 2410694 R identified by match to protein family HMM PF03171; alpha-ketoglutarate-dependent dioxygenase AlkB complement(2410044..2410694) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046320.1 CDS SeHA_C2505 NC_011083.1 2410697 2411755 R identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589; regulatory protein ada complement(2410697..2411755) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046321.1 CDS SeHA_C2506 NC_011083.1 2411839 2412891 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE complement(2411839..2412891) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046322.1 CDS SeHA_C2507 NC_011083.1 2413006 2414142 R allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C complement(2413006..2414142) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046323.1 CDS SeHA_C2509 NC_011083.1 2414871 2417540 D identified by match to protein family HMM PF01627; match to protein family HMM PF02518; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2414871..2417540 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046324.1 CDS rcsB NC_011083.1 2417557 2418207 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2417557..2418207 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046325.1 CDS SeHA_C2511 NC_011083.1 2418309 2421155 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF09456; hybrid sensory kinase in two-component regulatory system with RcsB and YojN complement(2418309..2421155) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046326.1 CDS gyrA NC_011083.1 2421273 2423909 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(2421273..2423909) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046327.1 CDS SeHA_C2513 NC_011083.1 2424319 2425521 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase complement(2424319..2425521) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046328.1 CDS SeHA_C2514 NC_011083.1 2425536 2426861 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; permease complement(2425536..2426861) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046329.1 CDS SeHA_C2515 NC_011083.1 2426911 2427795 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2426911..2427795 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046330.1 CDS ubiG NC_011083.1 2427878 2428606 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2427878..2428606 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046331.1 CDS nrdA NC_011083.1 2428962 2431247 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2428962..2431247 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046332.1 CDS nrdB NC_011083.1 2431360 2432490 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2431360..2432490 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046333.1 CDS SeHA_C2519 NC_011083.1 2432490 2432744 D 'plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases'; 2Fe-2S ferredoxin 2432490..2432744 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046334.1 CDS SeHA_C2520 NC_011083.1 2432746 2433936 R identified by match to protein family HMM PF07690; quinolone resistence NorA protein complement(2432746..2433936) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046335.1 CDS SeHA_C2521 NC_011083.1 2434098 2434976 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2434098..2434976 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046336.1 CDS glpQ NC_011083.1 2435092 2436162 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(2435092..2436162) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046337.1 CDS glpT NC_011083.1 2436167 2437525 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter complement(2436167..2437525) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046338.1 CDS glpA NC_011083.1 2437798 2439426 D 'anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor'; sn-glycerol-3-phosphate dehydrogenase subunit A 2437798..2439426 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046339.1 CDS glpB NC_011083.1 2439416 2440675 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2439416..2440675 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046340.1 CDS glpC NC_011083.1 2440672 2441862 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2440672..2441862 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046341.1 CDS SeHA_C2527 NC_011083.1 2442288 2443310 D 'similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system'; deubiquitinase 2442288..2443310 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046342.1 CDS SeHA_C2528 NC_011083.1 2443420 2443596 R competence damage-inducible protein A complement(2443420..2443596) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046343.1 CDS SeHA_C2529 NC_011083.1 2443602 2444405 R identified by match to protein family HMM PF03328; aldolase complement(2443602..2444405) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046344.1 CDS SeHA_C2530 NC_011083.1 2444431 2445720 R identified by match to protein family HMM PF07690; major facilitator family transporter protein complement(2444431..2445720) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046345.1 CDS SeHA_C2531 NC_011083.1 2445776 2446981 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein complement(2445776..2446981) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046346.1 CDS SeHA_C2532 NC_011083.1 2446995 2447777 R identified by match to protein family HMM PF01614; transcriptional regulator complement(2446995..2447777) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046347.1 CDS SeHA_C2533 NC_011083.1 2448027 2449223 R identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR00200; competence damage-inducible protein A complement(2448027..2449223) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046348.1 CDS SeHA_C2534 NC_011083.1 2449338 2450012 R identified by match to protein family HMM PF07437; hypothetical protein complement(2449338..2450012) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046349.1 CDS SeHA_C2535 NC_011083.1 2450159 2450584 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 2450159..2450584 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046350.1 CDS SeHA_C2536 NC_011083.1 2450629 2451234 R identified by match to protein family HMM PF00300; Ais protein complement(2450629..2451234) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046351.1 CDS SeHA_C2537 NC_011083.1 2451515 2452672 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2451515..2452672 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046352.1 CDS SeHA_C2538 NC_011083.1 2452675 2453658 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2452675..2453658 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046353.1 CDS SeHA_C2539 NC_011083.1 2453655 2455637 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2453655..2455637 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046354.1 CDS SeHA_C2540 NC_011083.1 2455634 2456533 D identified by match to protein family HMM PF01522; polysaccharide deacetylase domain-containing protein 2455634..2456533 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046355.1 CDS arnT NC_011083.1 2456530 2458176 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2456530..2458176 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046356.1 CDS SeHA_C2542 NC_011083.1 2458173 2458508 D identified by match to protein family HMM PF00893; hypothetical protein 2458173..2458508 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046357.1 CDS SeHA_C2543 NC_011083.1 2458508 2458885 D hypothetical protein 2458508..2458885 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046358.1 CDS SeHA_C2544 NC_011083.1 2458880 2459137 R signal transduction protein PmrD complement(2458880..2459137) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046359.1 CDS menE NC_011083.1 2459235 2460602 R identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase complement(2459235..2460602) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046360.1 CDS menC NC_011083.1 2460599 2461561 R 'catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate'; O-succinylbenzoate synthase complement(2460599..2461561) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046361.1 CDS menB NC_011083.1 2461561 2462418 R 'catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA'; naphthoate synthase complement(2461561..2462418) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046362.1 CDS SeHA_C2548 NC_011083.1 2462433 2463191 R catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB complement(2462433..2463191) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046363.1 CDS menD NC_011083.1 2463188 2464858 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2463188..2464858) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046364.1 CDS SeHA_C2550 NC_011083.1 2464944 2466239 R identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; menaquinone-specific isochorismate synthase complement(2464944..2466239) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046365.1 CDS SeHA_C2551 NC_011083.1 2466340 2466645 R identified by match to protein family HMM PF05957; hypothetical protein complement(2466340..2466645) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046366.1 CDS SeHA_C2552 NC_011083.1 2466700 2467161 R identified by match to protein family HMM PF00583; hypothetical protein complement(2466700..2467161) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046367.1 CDS rnz NC_011083.1 2467222 2468139 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2467222..2468139 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046368.1 CDS SeHA_C2554 NC_011083.1 2468205 2469209 D identified by match to protein family HMM PF00072; match to protein family HMM PF01584; CheW protein 2468205..2469209 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046369.1 CDS nuoN NC_011083.1 2469348 2470805 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(2469348..2470805) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046370.1 CDS nuoM NC_011083.1 2470812 2472341 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(2470812..2472341) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046371.1 CDS nuoL NC_011083.1 2472418 2474259 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(2472418..2474259) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046372.1 CDS nuoK NC_011083.1 2474256 2474558 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(2474256..2474558) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046373.1 CDS nuoJ NC_011083.1 2474555 2475109 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(2474555..2475109) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046374.1 CDS nuoI NC_011083.1 2475120 2475662 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2475120..2475662) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046375.1 CDS nuoH NC_011083.1 2475677 2476654 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(2475677..2476654) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046376.1 CDS nuoG NC_011083.1 2476651 2479377 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(2476651..2479377) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046377.1 CDS nuoF NC_011083.1 2479408 2480745 R 'shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase'; NADH dehydrogenase I subunit F complement(2479408..2480745) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046378.1 CDS nuoE NC_011083.1 2480742 2481242 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(2480742..2481242) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046379.1 CDS nuoC NC_011083.1 2481245 2483047 R 'NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms'; NADH:ubiquinone oxidoreductase subunit C/D complement(2481245..2483047) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046380.1 CDS nuoB NC_011083.1 2483134 2483796 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2483134..2483796) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046381.1 CDS nuoA NC_011083.1 2483812 2484255 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(2483812..2484255) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046382.1 CDS SeHA_C2568 NC_011083.1 2484650 2484802 R hypothetical protein complement(2484650..2484802) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046383.1 CDS SeHA_C2569 NC_011083.1 2484882 2485820 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; HTH-type transcriptional regulator PecT complement(2484882..2485820) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046384.1 CDS SeHA_C2570 NC_011083.1 2486486 2486671 R hypothetical protein complement(2486486..2486671) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046385.1 CDS SeHA_C2571 NC_011083.1 2486753 2487967 D 'broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor'; aminotransferase AlaT 2486753..2487967 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046386.1 CDS SeHA_C2572 NC_011083.1 2488061 2488660 D identified by match to protein family HMM PF01966; hypothetical protein 2488061..2488660 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046387.1 CDS SeHA_C2573 NC_011083.1 2488766 2490592 R identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808; citrate transporter complement(2488766..2490592) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046388.1 CDS SeHA_C2574 NC_011083.1 2490669 2491328 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphatase complement(2490669..2491328) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046389.1 CDS SeHA_C2575 NC_011083.1 2491339 2491878 R identified by match to protein family HMM PF03887; hypothetical protein complement(2491339..2491878) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046390.1 CDS SeHA_C2576 NC_011083.1 2491916 2492371 R identified by match to protein family HMM PF04217; hypothetical protein complement(2491916..2492371) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046391.1 CDS SeHA_C2577 NC_011083.1 2492540 2492674 D identified by glimmer; putative; hypothetical protein 2492540..2492674 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046392.1 CDS ackA NC_011083.1 2492711 2493913 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2492711..2493913 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046393.1 CDS pta NC_011083.1 2493990 2496134 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2493990..2496134 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046394.1 CDS SeHA_C2580 NC_011083.1 2496352 2497872 D identified by match to protein family HMM PF03606; hypothetical protein 2496352..2497872 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046395.1 CDS SeHA_C2581 NC_011083.1 2497921 2498874 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase domain-containing protein complement(2497921..2498874) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046396.1 CDS SeHA_C2582 NC_011083.1 2498867 2499697 R identified by match to protein family HMM PF00456; transketolase domain-containing protein complement(2498867..2499697) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046397.1 CDS ulaA NC_011083.1 2499694 2501085 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2499694..2501085) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046398.1 CDS SeHA_C2584 NC_011083.1 2501106 2501378 R identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB complement(2501106..2501378) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046399.1 CDS SeHA_C2585 NC_011083.1 2501459 2501902 R identified by match to protein family HMM PF00359; PTS system mannitol-specific transporter subunit IIA cryptic complement(2501459..2501902) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046400.1 CDS SeHA_C2586 NC_011083.1 2502155 2503174 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI 2502155..2503174 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046401.1 CDS SeHA_C2587 NC_011083.1 2503180 2503734 R identified by match to protein family HMM PF00293; nudix hydrolase 3 complement(2503180..2503734) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046402.1 CDS SeHA_C2588 NC_011083.1 2503791 2504342 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase complement(2503791..2504342) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046403.1 CDS SeHA_C2589 NC_011083.1 2504398 2505042 R identified by match to protein family HMM PF02798; glutathione S-transferase domain-containing protein complement(2504398..2505042) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046404.1 CDS SeHA_C2590 NC_011083.1 2505185 2505832 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase, N- domain 2505185..2505832 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046405.1 CDS SeHA_C2591 NC_011083.1 2505958 2506851 D identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM PF08338; match to protein family HMM TIGR01777; hypothetical protein 2505958..2506851 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046406.1 CDS hisP NC_011083.1 2506903 2507679 R identified by match to protein family HMM PF00005; histidine/lysine/arginine/ornithine transporter subunit complement(2506903..2507679) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046407.1 CDS hisM NC_011083.1 2507690 2508397 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisM complement(2507690..2508397) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046408.1 CDS hisQ NC_011083.1 2508394 2509080 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisQ complement(2508394..2509080) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046409.1 CDS SeHA_C2595 NC_011083.1 2509261 2510043 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein complement(2509261..2510043) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046410.1 CDS SeHA_C2596 NC_011083.1 2510281 2511063 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein complement(2510281..2511063) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046411.1 CDS SeHA_C2597 NC_011083.1 2511141 2511263 D hypothetical protein 2511141..2511263 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046412.1 CDS SeHA_C2598 NC_011083.1 2511352 2511921 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2511352..2511921) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046413.1 CDS SeHA_C2599 NC_011083.1 2511948 2513354 R identified by match to protein family HMM PF00324; amino acid permease complement(2511948..2513354) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046414.1 CDS SeHA_C2600 NC_011083.1 2513418 2514521 R identified by match to protein family HMM PF01168; amino acid racemase complement(2513418..2514521) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046415.1 CDS SeHA_C2601 NC_011083.1 2514523 2515944 R identified by match to protein family HMM PF00324; amino acid transporter complement(2514523..2515944) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046416.1 CDS SeHA_C2602 NC_011083.1 2516035 2517432 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase complement(2516035..2517432) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046417.1 CDS SeHA_C2603 NC_011083.1 2517643 2519070 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229; regulatory protein 2517643..2519070 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046418.1 CDS purF NC_011083.1 2519106 2520623 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2519106..2520623) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046419.1 CDS cvpA NC_011083.1 2520661 2521149 R membrane protein required for colicin V production; colicin V production protein complement(2520661..2521149) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046420.1 CDS SeHA_C2606 NC_011083.1 2521460 2522134 R identified by match to protein family HMM PF05036; hypothetical protein complement(2521460..2522134) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046421.1 CDS folC NC_011083.1 2522124 2523392 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(2522124..2523392) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046422.1 CDS accD NC_011083.1 2523460 2524374 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(2523460..2524374) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046423.1 CDS SeHA_C2609 NC_011083.1 2524524 2525183 R identified by match to protein family HMM PF09335; hypothetical protein complement(2524524..2525183) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046424.1 CDS truA NC_011083.1 2525232 2526044 R 'mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability'; tRNA pseudouridine synthase A complement(2525232..2526044) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046425.1 CDS SeHA_C2611 NC_011083.1 2526044 2527057 R identified by match to protein family HMM PF01118; match to protein family HMM PF02774; semialdehyde dehydrogenase complement(2526044..2527057) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046426.1 CDS pdxB NC_011083.1 2527125 2528261 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; erythronate-4-phosphate dehydrogenase complement(2527125..2528261) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046427.1 CDS flk NC_011083.1 2528365 2529366 D in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2528365..2529366 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046428.1 CDS SeHA_C2614 NC_011083.1 2529363 2530541 R identified by match to protein family HMM PF07690; hypothetical protein complement(2529363..2530541) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046429.1 CDS SeHA_C2615 NC_011083.1 2530722 2531096 R hypothetical protein complement(2530722..2531096) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046430.1 CDS SeHA_C2616 NC_011083.1 2531269 2531517 D regulator for maltose metabolism 2531269..2531517 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046431.1 CDS SeHA_C2617 NC_011083.1 2531686 2532054 D hypothetical protein 2531686..2532054 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046432.1 CDS SeHA_C2618 NC_011083.1 2532054 2532572 D hypothetical protein 2532054..2532572 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046433.1 CDS SeHA_C2619 NC_011083.1 2532639 2533250 R identified by match to protein family HMM PF02517; hypothetical protein complement(2532639..2533250) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046434.1 CDS SeHA_C2620 NC_011083.1 2533393 2534607 R 'FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP'; 3-oxoacyl-ACP synthase complement(2533393..2534607) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046435.1 CDS mnmC NC_011083.1 2534767 2536767 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2534767..2536767 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046436.1 CDS SeHA_C2622 NC_011083.1 2536819 2537094 R identified by match to protein family HMM PF08891; hypothetical protein complement(2536819..2537094) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046437.1 CDS SeHA_C2623 NC_011083.1 2537127 2537675 R identified by match to protein family HMM PF04315; hypothetical protein complement(2537127..2537675) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046438.1 CDS SeHA_C2624 NC_011083.1 2537675 2538484 R identified by match to protein family HMM PF01925; hypothetical protein complement(2537675..2538484) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046439.1 CDS mepA NC_011083.1 2538484 2539308 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(2538484..2539308) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046440.1 CDS aroC NC_011083.1 2539312 2540397 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2539312..2540397) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083690.1 CDS prmB NC_011083.1 2540433 2541365 R 50S ribosomal protein L3 glutamine methyltransferase complement(2540433..2541365) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046441.1 CDS SeHA_C2628 NC_011083.1 2541531 2542082 D identified by match to protein family HMM PF01713; hypothetical protein 2541531..2542082 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046442.1 CDS sixA NC_011083.1 2542182 2542667 R identified by match to protein family HMM TIGR00249; phosphohistidine phosphatase complement(2542182..2542667) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046443.1 CDS fadJ NC_011083.1 2542876 2545023 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(2542876..2545023) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046444.1 CDS fadI NC_011083.1 2545023 2546333 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(2545023..2546333) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046445.1 CDS SeHA_C2632 NC_011083.1 2546510 2546794 R identified by match to protein family HMM PF04175; match to protein family HMM TIGR00743; hypothetical protein complement(2546510..2546794) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046446.1 CDS SeHA_C2633 NC_011083.1 2546901 2547041 D identified by glimmer; putative; hypothetical protein 2546901..2547041 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046447.1 CDS SeHA_C2634 NC_011083.1 2547159 2548472 D identified by match to protein family HMM PF03349; long-chain fatty acid outer membrane transporter 2547159..2548472 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046448.1 CDS SeHA_C2635 NC_011083.1 2548533 2549288 R identified by match to protein family HMM PF04333; VacJ family lipoprotein complement(2548533..2549288) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046449.1 CDS SeHA_C2636 NC_011083.1 2549577 2550518 D hypothetical protein 2549577..2550518 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046450.1 CDS SeHA_C2638 NC_011083.1 2550781 2552010 D identified by match to protein family HMM PF00589; integrase 2550781..2552010 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046451.1 CDS SeHA_C2639 NC_011083.1 2552025 2553746 R hypothetical protein complement(2552025..2553746) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046452.1 CDS SeHA_C2640 NC_011083.1 2554020 2555450 R identified by glimmer; putative; hypothetical protein complement(2554020..2555450) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046454.1 CDS SeHA_C2642 NC_011083.1 2556453 2559140 R identified by match to protein family HMM PF06048; match to protein family HMM PF08273; zinc-binding domain of primase-helicase family complement(2556453..2559140) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046455.1 CDS SeHA_C2643 NC_011083.1 2559137 2559547 R hypothetical protein complement(2559137..2559547) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046456.1 CDS SeHA_C2644 NC_011083.1 2559540 2559776 R hypothetical protein complement(2559540..2559776) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046457.1 CDS SeHA_C2645 NC_011083.1 2559773 2560168 R phage immunity repressor protein complement(2559773..2560168) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046458.1 CDS SeHA_C2646 NC_011083.1 2560452 2561456 R major capsid protein complement(2560452..2561456) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046459.1 CDS SeHA_C2647 NC_011083.1 2561479 2562339 R hypothetical protein complement(2561479..2562339) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046460.1 CDS SeHA_C2648 NC_011083.1 2563186 2564124 R outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease complement(2563186..2564124) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046461.1 CDS SeHA_C2649 NC_011083.1 2564392 2565639 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; phosphoglycerate transport system transcriptional regulator PgtA complement(2564392..2565639) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046462.1 CDS SeHA_C2650 NC_011083.1 2565629 2567635 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; phosphoglycerate transport system sensor protein PgtB complement(2565629..2567635) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046463.1 CDS SeHA_C2651 NC_011083.1 2567632 2568855 R phosphoglycerate transport: protein for signal transmission complement(2567632..2568855) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046464.1 CDS SeHA_C2652 NC_011083.1 2568869 2569129 R hypothetical protein complement(2568869..2569129) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046465.1 CDS SeHA_C2653 NC_011083.1 2569261 2570652 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00881; phosphoglycerate transport: transporter 2569261..2570652 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046466.1 CDS SeHA_C2654 NC_011083.1 2570891 2571133 R hypothetical protein complement(2570891..2571133) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046467.1 CDS SeHA_C2655 NC_011083.1 2571294 2571407 R identified by glimmer; putative; hypothetical protein complement(2571294..2571407) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083691.1 CDS SeHA_C2656 NC_011083.1 2571655 2572575 D lipid A biosynthesis lauroyl acyltransferase 2571655..2572575 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046468.1 CDS SeHA_C2657 NC_011083.1 2572690 2572812 D identified by glimmer; putative; hypothetical protein 2572690..2572812 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046469.1 CDS SeHA_C2658 NC_011083.1 2573171 2573629 R identified by match to protein family HMM PF01797; transposase complement(2573171..2573629) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046470.1 CDS SeHA_C2659 NC_011083.1 2573808 2575046 R identified by match to protein family HMM PF00155; aminotransferase complement(2573808..2575046) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046471.1 CDS SeHA_C2660 NC_011083.1 2575393 2575539 R identified by glimmer; putative; hypothetical protein complement(2575393..2575539) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046472.1 CDS glk NC_011083.1 2575767 2576732 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase complement(2575767..2576732) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046473.1 CDS SeHA_C2662 NC_011083.1 2576936 2578171 D identified by match to protein family HMM PF00654; hypothetical protein 2576936..2578171 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046474.1 CDS SeHA_C2663 NC_011083.1 2578191 2579843 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase complement(2578191..2579843) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046475.1 CDS SeHA_C2664 NC_011083.1 2580023 2581021 D identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 2580023..2581021 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046476.1 CDS SeHA_C2665 NC_011083.1 2581135 2581461 D hypothetical protein 2581135..2581461 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046477.2 CDS SeHA_C2666 NC_011083.1 2581522 2582763 R identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH complement(2581522..2582763) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046478.1 CDS nupC NC_011083.1 2583106 2584308 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; nucleoside transporter NupC 2583106..2584308 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046479.1 CDS SeHA_C2668 NC_011083.1 2584361 2586550 R identified by match to protein family HMM PF00563; match to protein family HMM PF05231; diguanylate cyclase complement(2584361..2586550) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046480.1 CDS SeHA_C2671 NC_011083.1 2587171 2587518 D identified by match to protein family HMM PF07037; hypothetical protein 2587171..2587518 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046481.1 CDS SeHA_C2672 NC_011083.1 2587520 2587912 D identified by match to protein family HMM PF07037; hypothetical protein 2587520..2587912 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046482.1 CDS gltX NC_011083.1 2587966 2589381 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2587966..2589381) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046483.1 CDS SeHA_C2678 NC_011083.1 2590197 2591081 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional activator XapR complement(2590197..2591081) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046484.1 CDS SeHA_C2679 NC_011083.1 2591133 2591291 R identified by match to protein family HMM TIGR03510; XapX domain-containing protein complement(2591133..2591291) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046485.1 CDS nupG NC_011083.1 2591350 2592606 R identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside permease NupG complement(2591350..2592606) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046486.1 CDS xapA NC_011083.1 2592661 2593494 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(2592661..2593494) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046487.1 CDS SeHA_C2682 NC_011083.1 2593750 2594511 D identified by match to protein family HMM PF07135; hypothetical protein 2593750..2594511 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046488.1 CDS SeHA_C2683 NC_011083.1 2594573 2595499 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; OsmT protein complement(2594573..2595499) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046489.1 CDS SeHA_C2684 NC_011083.1 2595589 2596587 D identified by match to protein family HMM PF01758; bile acid/Na+ symporter family transporter 2595589..2596587 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046490.1 CDS SeHA_C2685 NC_011083.1 2596584 2596802 R hypothetical protein complement(2596584..2596802) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046491.1 CDS ligA NC_011083.1 2596804 2598819 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2596804..2598819) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046492.1 CDS zipA NC_011083.1 2598891 2599877 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(2598891..2599877) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046493.2 CDS SeHA_C2688 NC_011083.1 2600109 2600870 D putative role in sulfur assimilation; sulfate transport protein CysZ 2600109..2600870 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046494.1 CDS cysK NC_011083.1 2601182 2602153 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2601182..2602153 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046495.1 CDS SeHA_C2690 NC_011083.1 2602272 2602397 R hypothetical protein complement(2602272..2602397) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046496.1 CDS ptsH NC_011083.1 2602537 2602794 D identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2602537..2602794 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046497.1 CDS ptsI NC_011083.1 2602843 2604570 D 'Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system'; phosphoenolpyruvate-protein phosphotransferase 2602843..2604570 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046498.1 CDS crr NC_011083.1 2604611 2605120 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2604611..2605120 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046499.1 CDS SeHA_C2694 NC_011083.1 2605269 2605508 R hypothetical protein complement(2605269..2605508) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046500.1 CDS pdxK NC_011083.1 2605505 2606371 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase complement(2605505..2606371) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046501.1 CDS SeHA_C2696 NC_011083.1 2606454 2607746 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2606454..2607746 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046502.1 CDS SeHA_C2697 NC_011083.1 2607761 2608480 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2607761..2608480 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046503.1 CDS SeHA_C2698 NC_011083.1 2608539 2608922 D hypothetical protein 2608539..2608922 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046504.1 CDS SeHA_C2699 NC_011083.1 2609022 2609630 R identified by match to protein family HMM PF08238; Sel1 domain-containing protein repeat-containing protein complement(2609022..2609630) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046505.1 CDS cysM NC_011083.1 2609882 2610793 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(2609882..2610793) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046506.1 CDS cysA NC_011083.1 2610861 2611958 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968; sulfate/thiosulfate transporter subunit complement(2610861..2611958) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046507.1 CDS cysW NC_011083.1 2611948 2612823 R Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit complement(2611948..2612823) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046508.1 CDS cysT NC_011083.1 2612823 2613656 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate/thiosulfate transporter subunit complement(2612823..2613656) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046509.1 CDS cysP NC_011083.1 2613656 2614672 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; thiosulfate transporter subunit complement(2613656..2614672) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046510.1 CDS fabG NC_011083.1 2614830 2615621 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; short chain dehydrogenase complement(2614830..2615621) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046511.1 CDS SeHA_C2706 NC_011083.1 2615859 2616758 R identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413; dyp-type peroxidase family protein complement(2615859..2616758) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046512.1 CDS SeHA_C2707 NC_011083.1 2616853 2617428 R identified by match to protein family HMM PF06572; hypothetical protein complement(2616853..2617428) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046513.1 CDS SeHA_C2708 NC_011083.1 2617490 2617939 R hypothetical protein complement(2617490..2617939) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046514.1 CDS SeHA_C2709 NC_011083.1 2617926 2618351 R identified by match to protein family HMM PF00583; acetyltransferase complement(2617926..2618351) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046515.1 CDS amiA NC_011083.1 2618564 2619433 D identified by match to protein family HMM PF01520; match to protein family HMM TIGR01409; N-acetylmuramoyl-l-alanine amidase I 2618564..2619433 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046516.1 CDS hemF NC_011083.1 2619436 2620335 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2619436..2620335 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046517.1 CDS SeHA_C2712 NC_011083.1 2620362 2621033 D identified by glimmer; putative; hypothetical protein 2620362..2621033 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046518.1 CDS SeHA_C2713 NC_011083.1 2621017 2621214 D identified by glimmer; putative; hypothetical protein 2621017..2621214 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046519.1 CDS SeHA_C2714 NC_011083.1 2621295 2622347 R activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR complement(2621295..2622347) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046520.1 CDS SeHA_C2715 NC_011083.1 2622395 2622889 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutK complement(2622395..2622889) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046521.1 CDS SeHA_C2716 NC_011083.1 2622902 2623561 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutL complement(2622902..2623561) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046522.1 CDS eutC NC_011083.1 2623571 2624467 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(2623571..2624467) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046523.1 CDS eutB NC_011083.1 2624486 2625847 R identified by match to protein family HMM PF06751; ethanolamine ammonia-lyase large subunit complement(2624486..2625847) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046524.1 CDS eutA NC_011083.1 2625859 2627262 R ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase complement(2625859..2627262) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046525.1 CDS eutH NC_011083.1 2627259 2628485 R identified by match to protein family HMM PF04346; ethanolamine utilization protein EutH complement(2627259..2628485) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046526.1 CDS SeHA_C2721 NC_011083.1 2628605 2629792 R identified by match to protein family HMM PF00465; ethanolamine utilization protein EutG complement(2628605..2629792) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046527.1 CDS eutJ NC_011083.1 2629782 2630621 R identified by match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ complement(2629782..2630621) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046528.1 CDS eutE NC_011083.1 2630632 2632035 R identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE complement(2630632..2632035) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046529.1 CDS eutN NC_011083.1 2632047 2632334 R identified by match to protein family HMM PF03319; ethanolamine utilization protein complement(2632047..2632334) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083692.1 CDS SeHA_C2725 NC_011083.1 2632447 2632737 R ethanolamine utilization protein EutM complement(2632447..2632737) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046530.1 CDS eutD NC_011083.1 2632778 2633794 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(2632778..2633794) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046531.1 CDS eutT NC_011083.1 2633791 2634594 R identified by match to protein family HMM PF01923; ethanolamine utilization cobalamin adenosyltransferase complement(2633791..2634594) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046532.1 CDS SeHA_C2728 NC_011083.1 2634591 2635280 R identified by match to protein family HMM PF05899; match to protein family HMM PF06249; ethanolamine utilization protein EutQ complement(2634591..2635280) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046533.1 CDS eutP NC_011083.1 2635258 2635737 R identified by match to protein family HMM TIGR02528; ethanolamine utilization protein, EutP complement(2635258..2635737) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046534.1 CDS SeHA_C2730 NC_011083.1 2635750 2636085 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS complement(2635750..2636085) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046535.1 CDS SeHA_C2731 NC_011083.1 2636502 2638781 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(2636502..2638781) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046536.1 CDS tal1 NC_011083.1 2639053 2640003 D identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase A 2639053..2640003 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046537.1 CDS tkt NC_011083.1 2640023 2642023 D 'catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase'; transketolase 2640023..2642023 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046538.1 CDS SeHA_C2734 NC_011083.1 2642086 2642316 R hypothetical protein complement(2642086..2642316) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046539.1 CDS SeHA_C2735 NC_011083.1 2642444 2643487 R identified by match to protein family HMM PF06674; hypothetical protein complement(2642444..2643487) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046540.1 CDS SeHA_C2736 NC_011083.1 2643612 2644187 R identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; hydrolase YffH complement(2643612..2644187) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046541.1 CDS SeHA_C2737 NC_011083.1 2644391 2645689 D identified by match to protein family HMM PF00144; hypothetical protein 2644391..2645689 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046542.1 CDS SeHA_C2738 NC_011083.1 2646138 2648099 R 'unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic)'; oxidoreductase Fe-S binding subunit complement(2646138..2648099) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046543.1 CDS SeHA_C2739 NC_011083.1 2648285 2649985 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarQ 2648285..2649985 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046544.1 CDS acrD NC_011083.1 2650170 2653283 D identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; aminoglycoside/multidrug efflux system 2650170..2653283 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046545.1 CDS SeHA_C2741 NC_011083.1 2653857 2654213 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 2653857..2654213 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046546.1 CDS dapE NC_011083.1 2654217 2655344 D 'dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.'; succinyl-diaminopimelate desuccinylase 2654217..2655344 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046547.1 CDS SeHA_C2743 NC_011083.1 2655372 2655572 D hypothetical protein 2655372..2655572 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046548.1 CDS SeHA_C2744 NC_011083.1 2655599 2657617 R identified by match to protein family HMM PF00583; match to protein family HMM PF05127; acetyltransferase complement(2655599..2657617) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046549.1 CDS SeHA_C2745 NC_011083.1 2657633 2658496 R identified by match to protein family HMM PF04228; zinc protease complement(2657633..2658496) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046550.1 CDS purC NC_011083.1 2658627 2659340 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(2658627..2659340) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046551.1 CDS SeHA_C2747 NC_011083.1 2659515 2660549 R identified by match to protein family HMM PF06804; lipoprotein complement(2659515..2660549) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046552.1 CDS dapA NC_011083.1 2660566 2661444 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2660566..2661444) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046553.1 CDS gcvR NC_011083.1 2661590 2662162 D negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2661590..2662162 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046554.1 CDS bcp NC_011083.1 2662162 2662632 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2662162..2662632 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046555.1 CDS SeHA_C2751 NC_011083.1 2662679 2663032 R glycerate kinase complement(2662679..2663032) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046556.1 CDS SeHA_C2752 NC_011083.1 2663219 2664307 R identified by match to protein family HMM PF01594; permease PerM complement(2663219..2664307) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046557.1 CDS SeHA_C2753 NC_011083.1 2664494 2665957 D identified by match to protein family HMM PF01435; TPR repeat-containing protein YfgC 2664494..2665957 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046558.1 CDS arsC NC_011083.1 2665997 2666356 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 2665997..2666356 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046559.1 CDS hda NC_011083.1 2666383 2667108 R 'controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP'; DNA replication initiation factor complement(2666383..2667108) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046560.1 CDS uraA NC_011083.1 2667179 2668468 R identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil transporter complement(2667179..2668468) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046561.1 CDS upp NC_011083.1 2668556 2669182 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2668556..2669182) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046562.1 CDS SeHA_C2758 NC_011083.1 2669416 2669559 D identified by glimmer; putative; hypothetical protein 2669416..2669559 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046563.1 CDS purM NC_011083.1 2669595 2670632 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2669595..2670632 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046564.1 CDS purN NC_011083.1 2670632 2671270 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2670632..2671270 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046565.1 CDS ppk NC_011083.1 2671459 2673525 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2671459..2673525 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046566.1 CDS SeHA_C2762 NC_011083.1 2673530 2675071 D identified by match to protein family HMM PF02541; exopolyphosphatase 2673530..2675071 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046567.1 CDS SeHA_C2763 NC_011083.1 2675107 2677320 R identified by match to protein family HMM PF00563; match to protein family HMM PF05231; hypothetical protein complement(2675107..2677320) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046568.1 CDS SeHA_C2764 NC_011083.1 2677781 2677924 D hypothetical protein 2677781..2677924 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046569.1 CDS SeHA_C2765 NC_011083.1 2678969 2679325 R transposase B complement(2678969..2679325) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046570.1 CDS guaA NC_011083.1 2679482 2681059 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2679482..2681059) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046571.1 CDS guaB NC_011083.1 2681129 2682595 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2681129..2682595) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046572.1 CDS xseA NC_011083.1 2682756 2684105 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2682756..2684105 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046573.1 CDS SeHA_C2771 NC_011083.1 2698553 2704132 R identified by match to protein family HMM PF05688; match to protein family HMM PF05689; hypothetical protein complement(2698553..2704132) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046574.1 CDS SeHA_C2773 NC_011083.1 2704270 2705232 R hypothetical protein complement(2704270..2705232) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046575.1 CDS SeHA_C2772 NC_011083.1 2705187 2705309 D identified by glimmer; putative; hypothetical protein 2705187..2705309 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046576.1 CDS SeHA_C2774 NC_011083.1 2705290 2707482 R hypothetical protein complement(2705290..2707482) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046577.1 CDS SeHA_C2775 NC_011083.1 2707828 2708049 R identified by match to protein family HMM PF07191; hypothetical protein complement(2707828..2708049) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083693.1 CDS engA NC_011083.1 2708138 2709652 R GTPase EngA complement(2708138..2709652) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046578.1 CDS SeHA_C2777 NC_011083.1 2709727 2710905 R 'with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis'; outer membrane protein assembly complex subunit YfgL complement(2709727..2710905) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046579.1 CDS SeHA_C2778 NC_011083.1 2710916 2711536 R hypothetical protein complement(2710916..2711536) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046580.1 CDS hisS NC_011083.1 2711550 2712824 R 'catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG'; histidyl-tRNA synthetase complement(2711550..2712824) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046581.1 CDS ispG NC_011083.1 2712935 2714053 R 'catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis'; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2712935..2714053) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046582.1 CDS SeHA_C2782 NC_011083.1 2714080 2715084 R identified by match to protein family HMM PF01381; cytoskeletal protein RodZ complement(2714080..2715084) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046583.1 CDS SeHA_C2783 NC_011083.1 2715376 2716542 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(2715376..2716542) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046584.1 CDS ndk NC_011083.1 2716749 2717180 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2716749..2717180) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046585.1 CDS SeHA_C2785 NC_011083.1 2717301 2718164 R identified by match to protein family HMM PF00037; polyferredoxin complement(2717301..2718164) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046586.1 CDS SeHA_C2786 NC_011083.1 2718164 2718973 R dimethylsulfoxide reductase complement(2718164..2718973) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046587.1 CDS dmsB NC_011083.1 2718966 2719595 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B complement(2718966..2719595) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046588.1 CDS SeHA_C2788 NC_011083.1 2719592 2721970 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A complement(2719592..2721970) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046589.1 CDS pbpC NC_011083.1 2722125 2724440 R penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C complement(2722125..2724440) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046590.1 CDS SeHA_C2790 NC_011083.1 2724441 2729375 R identified by match to protein family HMM PF01835; match to protein family HMM PF07703; hypothetical protein complement(2724441..2729375) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046591.1 CDS sseA NC_011083.1 2729584 2730426 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2729584..2730426 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046594.1 CDS SeHA_C2793 NC_011083.1 2730673 2731341 D hypothetical protein 2730673..2731341 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046595.1 CDS SeHA_C2795 NC_011083.1 2731396 2731524 R identified by glimmer; putative; hypothetical protein complement(2731396..2731524) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046596.1 CDS sseB NC_011083.1 2731910 2732665 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB complement(2731910..2732665) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046597.1 CDS SeHA_C2798 NC_011083.1 2732805 2734088 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B complement(2732805..2734088) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046598.1 CDS iscX NC_011083.1 2734335 2734535 R identified by match to protein family HMM PF04384; match to protein family HMM TIGR03412; hypothetical protein complement(2734335..2734535) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046599.1 CDS fdx NC_011083.1 2734547 2734882 R identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007; ferredoxin complement(2734547..2734882) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046600.1 CDS hscA NC_011083.1 2734884 2736734 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2734884..2736734) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046601.1 CDS hscB NC_011083.1 2736747 2737262 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(2736747..2737262) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046602.1 CDS iscA NC_011083.1 2737458 2737781 R forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein complement(2737458..2737781) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046603.1 CDS iscU NC_011083.1 2737810 2738196 R identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein complement(2737810..2738196) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046604.1 CDS iscS NC_011083.1 2738224 2739438 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(2738224..2739438) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046605.1 CDS iscR NC_011083.1 2739619 2740113 R regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR complement(2739619..2740113) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046606.1 CDS SeHA_C2807 NC_011083.1 2740273 2741004 R identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase complement(2740273..2741004) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046607.1 CDS suhB NC_011083.1 2741123 2741926 D identified by match to protein family HMM PF00459; inositol monophosphatase 2741123..2741926 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046608.1 CDS SeHA_C2809 NC_011083.1 2742071 2742949 D hypothetical protein 2742071..2742949 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046609.1 CDS asrA NC_011083.1 2743131 2744174 D identified by match to protein family HMM TIGR02910; sulfite reductase subunit A 2743131..2744174 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046610.1 CDS asrB NC_011083.1 2744178 2744996 D with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2744178..2744996 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046611.1 CDS asrC NC_011083.1 2745007 2746020 D identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; sulfite reductase subunit C 2745007..2746020 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046612.1 CDS SeHA_C2813 NC_011083.1 2746021 2747007 R identified by match to protein family HMM PF03824; high-affinity nickel-transporter complement(2746021..2747007) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046613.1 CDS SeHA_C2814 NC_011083.1 2746998 2747666 R identified by match to protein family HMM PF06226; hypothetical protein complement(2746998..2747666) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046614.1 CDS SeHA_C2815 NC_011083.1 2747762 2749039 D identified by match to protein family HMM PF00874; stationary phase inducible protein CsiE 2747762..2749039 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046615.1 CDS SeHA_C2816 NC_011083.1 2749034 2750173 R putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter complement(2749034..2750173) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046616.1 CDS glyA NC_011083.1 2750369 2751622 R 'catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate'; serine hydroxymethyltransferase complement(2750369..2751622) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046617.1 CDS SeHA_C2818 NC_011083.1 2751760 2751906 R hypothetical protein complement(2751760..2751906) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046618.1 CDS hmp NC_011083.1 2751947 2753137 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2751947..2753137 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046619.1 CDS SeHA_C2820 NC_011083.1 2753319 2754863 D regulates the cadBA operon; DNA-binding transcriptional activator CadC 2753319..2754863 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046620.1 CDS cadB NC_011083.1 2755224 2756555 D antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2755224..2756555 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046621.1 CDS SeHA_C2822 NC_011083.1 2756638 2758782 D identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 2756638..2758782 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046622.1 CDS SeHA_C2823 NC_011083.1 2758838 2760298 D identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH 2758838..2760298 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046623.1 CDS SeHA_C2824 NC_011083.1 2760347 2760685 R 'indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA'; nitrogen regulatory protein P-II 1 complement(2760347..2760685) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046624.1 CDS SeHA_C2825 NC_011083.1 2760762 2762099 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728; transcriptional regulator ZraR complement(2760762..2762099) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046625.1 CDS SeHA_C2826 NC_011083.1 2762096 2762782 R hypothetical protein complement(2762096..2762782) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083694.1 CDS SeHA_C2827 NC_011083.1 2762862 2764304 R hypothetical protein complement(2762862..2764304) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046626.1 CDS SeHA_C2830 NC_011083.1 2764555 2764683 D identified by glimmer; putative; hypothetical protein 2764555..2764683 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046627.1 CDS purL NC_011083.1 2764942 2768829 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2764942..2768829) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046628.1 CDS SeHA_C2832 NC_011083.1 2768943 2769080 D hypothetical protein 2768943..2769080 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046629.1 CDS SeHA_C2833 NC_011083.1 2769085 2770629 D 'YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function'; transglycosylase 2769085..2770629 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046630.1 CDS SeHA_C2834 NC_011083.1 2770680 2771198 R identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase complement(2770680..2771198) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046631.1 CDS yfhB NC_011083.1 2771256 2771891 R identified by match to protein family HMM TIGR01545; hypothetical protein complement(2771256..2771891) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046632.1 CDS SeHA_C2836 NC_011083.1 2771895 2773256 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system transporter subunit IIC complement(2771895..2773256) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046633.1 CDS murQ NC_011083.1 2773267 2774160 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(2773267..2774160) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046634.1 CDS SeHA_C2838 NC_011083.1 2774276 2775124 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; DNA-binding transcriptional regulator 2774276..2775124 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046635.1 CDS panE NC_011083.1 2775163 2776080 R identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase complement(2775163..2776080) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046636.1 CDS SeHA_C2840 NC_011083.1 2776102 2777298 R identified by match to protein family HMM PF07690; major facilitator family transporter protein complement(2776102..2777298) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046637.1 CDS SeHA_C2841 NC_011083.1 2777414 2778340 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2777414..2778340 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046638.1 CDS SeHA_C2842 NC_011083.1 2778378 2778638 D identified by match to protein family HMM PF00037; ferredoxin 2778378..2778638 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046639.1 CDS acpS NC_011083.1 2778750 2779130 R 'Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids'; 4'-phosphopantetheinyl transferase complement(2778750..2779130) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046640.1 CDS pdxJ NC_011083.1 2779130 2779861 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2779130..2779861) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046641.1 CDS recO NC_011083.1 2779873 2780601 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2779873..2780601) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046642.1 CDS era NC_011083.1 2780613 2781518 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2780613..2781518) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046643.1 CDS rnc NC_011083.1 2781515 2782252 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(2781515..2782252) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046644.1 CDS lepB NC_011083.1 2782469 2783443 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I complement(2782469..2783443) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046645.1 CDS lepA NC_011083.1 2783460 2785259 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2783460..2785259) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046646.1 CDS SeHA_C2851 NC_011083.1 2785511 2785990 R involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC complement(2785511..2785990) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046647.1 CDS rseB NC_011083.1 2785987 2786943 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(2785987..2786943) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046648.1 CDS rseA NC_011083.1 2786943 2787593 R identified by match to protein family HMM PF03872; match to protein family HMM PF03873; anti-RNA polymerase sigma factor SigE complement(2786943..2787593) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046649.1 CDS rpoE NC_011083.1 2787625 2788200 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(2787625..2788200) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046650.1 CDS SeHA_C2855 NC_011083.1 2788361 2788540 R identified by glimmer; putative; hypothetical protein complement(2788361..2788540) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046651.1 CDS nadB NC_011083.1 2788625 2790247 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2788625..2790247 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_007419099.1 CDS SeHA_C2857 NC_011083.1 2790232 2790969 R methyltransferase complement(2790232..2790969) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046652.1 CDS SeHA_C2858 NC_011083.1 2791100 2792434 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2791100..2792434 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046653.1 CDS SeHA_C2860 NC_011083.1 2792452 2793396 R identified by match to protein family HMM PF03466; LysR substrate binding domain complement(2792452..2793396) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046654.1 CDS SeHA_C2861 NC_011083.1 2793454 2794041 D identified by match to protein family HMM PF01810; neutral amino-acid efflux protein 2793454..2794041 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046655.1 CDS grcA NC_011083.1 2794103 2794486 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(2794103..2794486) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046656.1 CDS ung NC_011083.1 2794805 2795494 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2794805..2795494 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046657.1 CDS SeHA_C2864 NC_011083.1 2795610 2796647 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; methyltransferase complement(2795610..2796647) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046658.1 CDS SeHA_C2865 NC_011083.1 2796851 2797270 D identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068; thioredoxin 2 2796851..2797270 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046659.1 CDS SeHA_C2866 NC_011083.1 2797343 2798023 D identified by match to protein family HMM PF03942; DTW domain-containing protein 2797343..2798023 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046660.1 CDS SeHA_C2867 NC_011083.1 2798077 2800737 D identified by match to protein family HMM PF00583; match to protein family HMM PF02629; CoA binding domain/acetyltransferase domain-containing protein 2798077..2800737 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046661.1 CDS pssA NC_011083.1 2800852 2802207 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2800852..2802207 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046662.1 CDS SeHA_C2869 NC_011083.1 2802252 2802575 D hypothetical protein 2802252..2802575 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046663.1 CDS SeHA_C2870 NC_011083.1 2802572 2803873 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; alpha-ketoglutarate transporter complement(2802572..2803873) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046664.1 CDS SeHA_C2871 NC_011083.1 2803977 2804432 R hypothetical protein complement(2803977..2804432) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046666.1 CDS clpB NC_011083.1 2810313 2812886 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; protein disaggregation chaperone complement(2810313..2812886) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046667.1 CDS SeHA_C2878 NC_011083.1 2813016 2813747 R identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein complement(2813016..2813747) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046668.1 CDS rluD NC_011083.1 2813744 2814724 R 'responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA'; 23S rRNA pseudouridine synthase D complement(2813744..2814724) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046669.1 CDS SeHA_C2880 NC_011083.1 2814856 2815593 D 'with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline'; outer membrane protein assembly complex subunit YfiO 2814856..2815593 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046670.1 CDS SeHA_C2881 NC_011083.1 2815865 2816203 D associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2815865..2816203 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046671.1 CDS pheA NC_011083.1 2816454 2817614 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2816454..2817614 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046672.1 CDS SeHA_C2883 NC_011083.1 2817575 2818483 R identified by match to protein family HMM PF08450; SMP-30/gluconolaconase/LRE domain-containing protein complement(2817575..2818483) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046673.1 CDS tyrA NC_011083.1 2818541 2819662 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(2818541..2819662) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046674.1 CDS aroF NC_011083.1 2819672 2820742 R 'catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive'; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2819672..2820742) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046676.1 CDS SeHA_C2887 NC_011083.1 2821182 2821700 D hypothetical protein 2821182..2821700 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046677.2 CDS SeHA_C2888 NC_011083.1 2821693 2822913 D identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; hypothetical protein 2821693..2822913 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046678.1 CDS rplS NC_011083.1 2823070 2823417 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2823070..2823417) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046679.1 CDS trmD NC_011083.1 2823458 2824225 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2823458..2824225) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046680.1 CDS rimM NC_011083.1 2824270 2824821 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(2824270..2824821) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046681.1 CDS rpsP NC_011083.1 2824837 2825085 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2824837..2825085) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046682.1 CDS ffh NC_011083.1 2825399 2826760 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(2825399..2826760) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083695.1 CDS SeHA_C2894 NC_011083.1 2826926 2827717 D hypothetical protein 2826926..2827717 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046683.1 CDS SeHA_C2895 NC_011083.1 2827782 2829023 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 2827782..2829023 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046684.1 CDS SeHA_C2896 NC_011083.1 2829108 2829749 D hypothetical protein 2829108..2829749 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046685.1 CDS grpE NC_011083.1 2829784 2830374 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2829784..2830374) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046686.1 CDS ppnK NC_011083.1 2830497 2831375 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2830497..2831375 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046687.1 CDS recN NC_011083.1 2831461 2833122 D identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; recombination and repair protein 2831461..2833122 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046688.1 CDS SeHA_C2900 NC_011083.1 2833271 2833609 D identified by match to protein family HMM PF04355; hypothetical protein 2833271..2833609 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046689.1 CDS SeHA_C2901 NC_011083.1 2833775 2834065 R identified by match to protein family HMM PF03658; hypothetical protein complement(2833775..2834065) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046690.1 CDS SeHA_C2902 NC_011083.1 2834055 2834531 R identified by match to protein family HMM PF03364; hypothetical protein complement(2834055..2834531) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046691.1 CDS smpB NC_011083.1 2834681 2835163 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; ssrA-binding protein 2834681..2835163 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046692.1 CDS SeHA_C2904 NC_011083.1 2835310 2835429 R identified by glimmer; putative; hypothetical protein complement(2835310..2835429) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046693.1 CDS SeHA_C2905 NC_011083.1 2835779 2847253 D identified by match to protein family HMM TIGR01965; hypothetical protein 2835779..2847253 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046694.1 CDS SeHA_C2906 NC_011083.1 2847318 2848727 D identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844; type I secretion outer membrane protein, TolC family 2847318..2848727 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046695.1 CDS SeHA_C2907 NC_011083.1 2848724 2850904 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR03375; protein secretion ABC efflux system permease/ATP-binding protein 2848724..2850904 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046696.1 CDS SeHA_C2908 NC_011083.1 2850885 2852075 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; type I secretion membrane fusion protein, HlyD family 2850885..2852075 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046697.1 CDS SeHA_C2913 NC_011083.1 2853923 2854561 D hypothetical protein 2853923..2854561 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046698.1 CDS SeHA_C2914 NC_011083.1 2855005 2856144 D identified by match to protein family HMM PF02810; hypothetical protein 2855005..2856144 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046699.1 CDS SeHA_C2915 NC_011083.1 2856479 2857291 R hypothetical protein complement(2856479..2857291) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046700.1 CDS SeHA_C2916 NC_011083.1 2857757 2857972 D identified by match to protein family HMM PF05930; hypothetical protein 2857757..2857972 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046701.1 CDS SeHA_C2917 NC_011083.1 2858008 2860077 D identified by match to protein family HMM PF06048; hypothetical protein 2858008..2860077 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046702.1 CDS SeHA_C2918 NC_011083.1 2860197 2860322 D identified by glimmer; putative; hypothetical protein 2860197..2860322 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046703.1 CDS SeHA_C2919 NC_011083.1 2860580 2861863 D ATPase 2860580..2861863 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046704.1 CDS SeHA_C2920 NC_011083.1 2861860 2862726 D hypothetical protein 2861860..2862726 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046705.1 CDS SeHA_C2921 NC_011083.1 2862723 2862863 R identified by glimmer; putative; hypothetical protein complement(2862723..2862863) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046706.1 CDS SeHA_C2922 NC_011083.1 2862879 2863169 R identified by match to protein family HMM PF01381; XRE family transcriptional regulator complement(2862879..2863169) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046707.1 CDS SeHA_C2923 NC_011083.1 2863330 2863614 D regulator for maltose metabolism 2863330..2863614 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046708.1 CDS SeHA_C2924 NC_011083.1 2863727 2864248 D identified by match to protein family HMM PF03608; glucitol/sorbitol permease iic component 2863727..2864248 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046709.1 CDS SeHA_C2925 NC_011083.1 2864248 2864619 D identified by match to protein family HMM PF03829; PTS system glucitol-specific transporter subunit III 2864248..2864619 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046710.1 CDS SeHA_C2926 NC_011083.1 2864616 2865596 D identified by match to protein family HMM PF03612; match to protein family HMM PF07663; glucitol/sorbitol-specific phosphotransferase enzyme iib component 2864616..2865596 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046711.1 CDS SeHA_C2927 NC_011083.1 2865607 2866620 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; dehydrogenase 2865607..2866620 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046712.1 CDS SeHA_C2928 NC_011083.1 2866915 2868117 D hexulose 6 phosphate synthase 2866915..2868117 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046713.1 CDS hxlA NC_011083.1 2868191 2868826 R identified by match to protein family HMM PF00215; match to protein family HMM TIGR03128; 3-hexulose-6-phosphate synthase complement(2868191..2868826) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046714.1 CDS hxlB NC_011083.1 2868850 2869416 R identified by match to protein family HMM PF01380; match to protein family HMM TIGR03127; 6-phospho 3-hexuloisomerase complement(2868850..2869416) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046715.1 CDS SeHA_C2931 NC_011083.1 2869413 2870255 R identified by match to protein family HMM PF06560; hypothetical protein complement(2869413..2870255) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046716.1 CDS ptsG NC_011083.1 2870385 2871926 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02002; PTS system glucose-specific transporter subunit IIBC complement(2870385..2871926) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046717.1 CDS SeHA_C2933 NC_011083.1 2872149 2873828 D identified by match to protein family HMM PF00496; dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein 2872149..2873828 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046720.1 CDS SeHA_C2936 NC_011083.1 2874945 2875820 D DNA-binding prophage protein 2874945..2875820 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046721.1 CDS SeHA_C2937 NC_011083.1 2875986 2877860 D hypothetical protein 2875986..2877860 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046722.1 CDS SeHA_C2938 NC_011083.1 2878120 2879442 R hypothetical protein complement(2878120..2879442) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046723.1 CDS SeHA_C2939 NC_011083.1 2879640 2879795 R identified by glimmer; putative; hypothetical protein complement(2879640..2879795) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046724.1 CDS SeHA_C2942 NC_011083.1 2881572 2881838 R identified by match to protein family HMM PF01527; transposase subfamily protein complement(2881572..2881838) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046725.1 CDS SeHA_C2943 NC_011083.1 2882926 2884908 R DNA/RNA helicase complement(2882926..2884908) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046726.1 CDS SeHA_C2944 NC_011083.1 2885187 2885486 D identified by match to protein family HMM PF01527; IS3, transposase orfA 2885187..2885486 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046727.1 CDS SeHA_C2945 NC_011083.1 2885483 2886349 D identified by match to protein family HMM PF00665; transposase InsF for insertion sequence IS3A/B/C/D/E/fA 2885483..2886349 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046728.2 CDS SeHA_C2946 NC_011083.1 2887129 2887668 R identified by match to protein family HMM PF03614; phase 1 flagellin represson complement(2887129..2887668) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046729.1 CDS SeHA_C2947 NC_011083.1 2887736 2889256 R 'structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes'; flagellin complement(2887736..2889256) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046730.1 CDS SeHA_C2948 NC_011083.1 2889630 2890193 R identified by match to protein family HMM PF00239; match to protein family HMM PF02796; DNA-invertase hin complement(2889630..2890193) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046731.1 CDS SeHA_C2949 NC_011083.1 2890884 2891999 D identified by match to protein family HMM PF06722; glycosyltransferase 2890884..2891999 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046732.1 CDS SeHA_C2950 NC_011083.1 2892080 2895736 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ATP-binding protein 2892080..2895736 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046733.1 CDS SeHA_C2951 NC_011083.1 2895846 2897090 D identified by match to protein family HMM PF00756; enterochelin esterase 2895846..2897090 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046734.1 CDS SeHA_C2952 NC_011083.1 2897122 2898057 D hypothetical protein 2897122..2898057 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046735.1 CDS SeHA_C2953 NC_011083.1 2898099 2900273 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(2898099..2900273) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046736.1 CDS SeHA_C2955 NC_011083.1 2901312 2902412 R identified by match to protein family HMM PF00805; effector protein pipB2 complement(2901312..2902412) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046737.1 CDS SeHA_C2956 NC_011083.1 2902883 2903812 D identified by match to protein family HMM PF04393; virulence protein 2902883..2903812 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046738.1 CDS SeHA_C2957 NC_011083.1 2903912 2904109 D identified by glimmer; putative; hypothetical protein 2903912..2904109 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046739.1 CDS SeHA_C2958 NC_011083.1 2904106 2905002 D identified by match to protein family HMM PF07395; hypothetical protein 2904106..2905002 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046740.1 CDS SeHA_C2959 NC_011083.1 2905081 2905233 R identified by glimmer; putative; hypothetical protein complement(2905081..2905233) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046741.1 CDS SeHA_C2960 NC_011083.1 2905371 2905502 D identified by glimmer; putative; hypothetical protein 2905371..2905502 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046742.1 CDS SeHA_C2961 NC_011083.1 2905518 2905631 D hypothetical protein 2905518..2905631 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046743.1 CDS hoxN NC_011083.1 2905724 2906737 R identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802; high-affinity nickel transport protein complement(2905724..2906737) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046744.1 CDS SeHA_C2963 NC_011083.1 2906870 2908285 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521; tricarboxylic transport: regulatory protein complement(2906870..2908285) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046745.1 CDS SeHA_C2964 NC_011083.1 2908272 2908946 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator TctD complement(2908272..2908946) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046746.1 CDS SeHA_C2965 NC_011083.1 2909101 2910078 D identified by match to protein family HMM PF03401; tricarboxylic transport 2909101..2910078 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046747.1 CDS SeHA_C2966 NC_011083.1 2910093 2910524 D tricarboxylic transport 2910093..2910524 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046748.1 CDS SeHA_C2967 NC_011083.1 2910535 2912049 D identified by match to protein family HMM PF01970; tricarboxylic transport 2910535..2912049 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083696.1 CDS SeHA_C2969 NC_011083.1 2912352 2913329 D hypothetical protein 2912352..2913329 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046750.1 CDS SeHA_C2970 NC_011083.1 2913355 2914623 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2913355..2914623 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046751.1 CDS gabD NC_011083.1 2914645 2916093 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2914645..2916093 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046752.1 CDS gabT NC_011083.1 2916108 2917391 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2916108..2917391 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046753.1 CDS gabP NC_011083.1 2917521 2918921 D identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773; gamma-aminobutyrate transporter 2917521..2918921 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046754.1 CDS SeHA_C2974 NC_011083.1 2918963 2919640 D regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2918963..2919640 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046755.1 CDS SeHA_C2975 NC_011083.1 2919662 2920111 R identified by match to protein family HMM PF01476; match to protein family HMM PF04972; LysM domain/BON superfamily protein complement(2919662..2920111) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046756.1 CDS SeHA_C2976 NC_011083.1 2920211 2920369 R identified by match to protein family HMM PF01679; hypothetical protein complement(2920211..2920369) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046757.1 CDS SeHA_C2977 NC_011083.1 2920552 2920851 D identified by match to protein family HMM PF01022; regulatory protein ArsR 2920552..2920851 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046758.1 CDS SeHA_C2978 NC_011083.1 2920861 2921388 D identified by match to protein family HMM PF00581; hypothetical protein 2920861..2921388 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046759.1 CDS SeHA_C2979 NC_011083.1 2921467 2921646 D hypothetical protein 2921467..2921646 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046760.1 CDS SeHA_C2980 NC_011083.1 2921736 2922137 R identified by match to protein family HMM PF00816; DNA binding protein, nucleoid-associated complement(2921736..2922137) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046762.1 CDS SeHA_C2982 NC_011083.1 2922836 2923285 D identified by match to protein family HMM PF06610; hypothetical protein 2922836..2923285 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046763.1 CDS SeHA_C2983 NC_011083.1 2923320 2923670 R identified by match to protein family HMM PF09400; hypothetical protein complement(2923320..2923670) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046764.1 CDS SeHA_C2984 NC_011083.1 2923832 2924158 D identified by match to protein family HMM PF05957; hypothetical protein 2923832..2924158 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046765.1 CDS SeHA_C2985 NC_011083.1 2924242 2925576 R with aminotransferase domain; identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator complement(2924242..2925576) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046766.1 CDS SeHA_C2986 NC_011083.1 2925662 2926096 D identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase AhpD family core domain-containing protein 2925662..2926096 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046767.1 CDS SeHA_C2987 NC_011083.1 2926111 2926269 D hypothetical protein 2926111..2926269 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046768.1 CDS SeHA_C2988 NC_011083.1 2926368 2926613 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; glutaredoxin-like protein 2926368..2926613 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046769.1 CDS nrdI NC_011083.1 2926610 2927020 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2926610..2927020 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046770.1 CDS SeHA_C2990 NC_011083.1 2926993 2929137 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2926993..2929137 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046771.1 CDS nrdF NC_011083.1 2929148 2930107 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2929148..2930107 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046772.1 CDS proV NC_011083.1 2930462 2931664 D with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2930462..2931664 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046773.1 CDS SeHA_C2993 NC_011083.1 2931657 2932721 D with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2931657..2932721 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046774.1 CDS proX NC_011083.1 2932791 2933786 D 'with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine'; glycine betaine transporter periplasmic subunit 2932791..2933786 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046775.1 CDS SeHA_C2995 NC_011083.1 2933951 2935135 D identified by match to protein family HMM PF07690; major facilitator family transporter protein 2933951..2935135 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046776.1 CDS mprA NC_011083.1 2935632 2936162 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2935632..2936162 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046777.1 CDS emrA NC_011083.1 2936289 2937461 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR00998; multidrug resistance protein A 2936289..2937461 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046778.1 CDS emrB NC_011083.1 2937478 2939016 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein B 2937478..2939016 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046779.1 CDS SeHA_C2999 NC_011083.1 2939065 2940435 R glycoporin complement(2939065..2940435) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046780.1 CDS SeHA_C3000 NC_011083.1 2940580 2940723 D hypothetical protein 2940580..2940723 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046781.1 CDS luxS NC_011083.1 2940781 2941296 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(2940781..2941296) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046782.1 CDS gshA NC_011083.1 2941446 2943002 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(2941446..2943002) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046783.1 CDS SeHA_C3004 NC_011083.1 2943079 2943504 R hypothetical protein complement(2943079..2943504) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046784.1 CDS SeHA_C3005 NC_011083.1 2943501 2944067 R 'YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent'; fructose-1-phosphatase complement(2943501..2944067) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046785.1 CDS SeHA_C3006 NC_011083.1 2944150 2944311 R identified by glimmer; putative; hypothetical protein complement(2944150..2944311) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046786.1 CDS csrA NC_011083.1 2945461 2945646 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(2945461..2945646) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046787.1 CDS alaS NC_011083.1 2945881 2948511 R 'Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; alanyl-tRNA synthetase complement(2945881..2948511) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046788.1 CDS recX NC_011083.1 2948747 2949247 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2948747..2949247) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046789.1 CDS recA NC_011083.1 2949364 2950425 R 'catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs'; recombinase A complement(2949364..2950425) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046790.1 CDS SeHA_C3016 NC_011083.1 2950510 2951007 R identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A complement(2950510..2951007) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046791.1 CDS mltB NC_011083.1 2951485 2952564 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B complement(2951485..2952564) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046792.1 CDS SeHA_C3018 NC_011083.1 2952818 2953381 D identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821; glucitol/sorbitol permease iic component 2952818..2953381 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046793.1 CDS SeHA_C3019 NC_011083.1 2953378 2954349 D identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825; glucitol/sorbitol-specific phosphotransferase enzyme iib component 2953378..2954349 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046794.1 CDS SeHA_C3020 NC_011083.1 2954361 2954723 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 2954361..2954723 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046795.1 CDS srlD NC_011083.1 2954735 2955514 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 2954735..2955514 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046796.1 CDS SeHA_C3022 NC_011083.1 2955591 2955950 D regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2955591..2955950 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046797.1 CDS srlR NC_011083.1 2956148 2956921 D regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2956148..2956921 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046798.1 CDS gutQ NC_011083.1 2956914 2957879 D catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 2956914..2957879 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046799.1 CDS norR NC_011083.1 2957876 2959396 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(2957876..2959396) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046800.1 CDS norV NC_011083.1 2959582 2961021 D detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2959582..2961021 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046801.1 CDS SeHA_C3027 NC_011083.1 2961018 2962151 D catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2961018..2962151 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046802.1 CDS hypF NC_011083.1 2962248 2964488 R identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF complement(2962248..2964488) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046803.1 CDS SeHA_C3029 NC_011083.1 2964634 2965179 R involved in electron transport from formate to hydrogen; electron transport protein HydN complement(2964634..2965179) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046804.1 CDS SeHA_C3030 NC_011083.1 2965148 2965282 R hypothetical protein complement(2965148..2965282) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046805.1 CDS SeHA_C3031 NC_011083.1 2965380 2966189 R hypothetical protein complement(2965380..2966189) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046806.1 CDS hycI NC_011083.1 2966216 2966686 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease complement(2966216..2966686) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046807.1 CDS SeHA_C3033 NC_011083.1 2966679 2967089 R identified by match to protein family HMM PF07450; formate hydrogenlyase maturation protein complement(2966679..2967089) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046808.1 CDS hycG NC_011083.1 2967086 2967853 R identified by match to protein family HMM PF01058; formate hydrogenlyase subunit G complement(2967086..2967853) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046809.1 CDS hycF NC_011083.1 2967853 2968395 R 'electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate'; formate hydrogenlyase complex iron-sulfur subunit complement(2967853..2968395) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046810.1 CDS hycE NC_011083.1 2968405 2970114 R identified by match to protein family HMM PF00329; match to protein family HMM PF00346; formate hydrogenlyase subunit E complement(2968405..2970114) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046811.1 CDS hycD NC_011083.1 2970132 2971055 R identified by match to protein family HMM PF00146; formate hydrogenlyase subunit D complement(2970132..2971055) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046812.1 CDS hycC NC_011083.1 2971058 2972884 R 'catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3)'; formate hydrogenlyase subunit 3 complement(2971058..2972884) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046813.1 CDS hycB NC_011083.1 2972884 2973492 R identified by match to protein family HMM PF00037; formate hydrogenlyase subunit B complement(2972884..2973492) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046815.1 CDS SeHA_C3041 NC_011083.1 2973638 2974099 R regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA complement(2973638..2974099) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046816.1 CDS SeHA_C3042 NC_011083.1 2974145 2974348 D identified by glimmer; putative; hypothetical protein 2974145..2974348 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046817.1 CDS hypA NC_011083.1 2974309 2974665 D plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 2974309..2974665 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046818.1 CDS hypB NC_011083.1 2974734 2975606 D GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 2974734..2975606 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046819.1 CDS hypC NC_011083.1 2975597 2975869 D 'HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase'; hydrogenase assembly chaperone 2975597..2975869 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046820.1 CDS hypD NC_011083.1 2975869 2976990 D identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 2975869..2976990 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046821.1 CDS hypE NC_011083.1 2976987 2977997 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 2976987..2977997 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046822.1 CDS SeHA_C3048 NC_011083.1 2978231 2980294 D identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; formate hydrogenlyase transcriptional activator 2978231..2980294 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046823.1 CDS SeHA_C3049 NC_011083.1 2980356 2980700 R hypothetical protein complement(2980356..2980700) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046824.1 CDS SeHA_C3050 NC_011083.1 2980882 2981799 D identified by match to protein family HMM PF01297; periplasmic chelated iron-binding protein YfeA 2980882..2981799 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046825.1 CDS SeHA_C3051 NC_011083.1 2981796 2982617 D identified by match to protein family HMM PF00005; chelated iron transport system membrane protein YfeB 2981796..2982617 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046826.1 CDS SeHA_C3052 NC_011083.1 2982614 2983474 D identified by match to protein family HMM PF00950; match to protein family HMM PF01032; chelated iron transport system membrane protein YfeC 2982614..2983474 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046827.1 CDS SeHA_C3053 NC_011083.1 2983465 2984313 D identified by match to protein family HMM PF00950; chelated iron transport system membrane protein YfeD 2983465..2984313 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046828.1 CDS SeHA_C3054 NC_011083.1 2984412 2985254 R identified by match to protein family HMM PF03421; secreted effector protein complement(2984412..2985254) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046829.1 CDS SeHA_C3055 NC_011083.1 2985481 2986236 R transcriptional regulator complement(2985481..2986236) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046830.1 CDS SeHA_C3056 NC_011083.1 2986621 2987508 R identified by match to protein family HMM PF00165; araC family transcriptional regulator complement(2986621..2987508) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046831.2 CDS SeHA_C3057 NC_011083.1 2987853 2988305 R hypothetical protein complement(2987853..2988305) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046832.1 CDS SeHA_C3058 NC_011083.1 2988302 2988982 R oxygen-regulated invasion protein OrgB complement(2988302..2988982) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046833.1 CDS SeHA_C3059 NC_011083.1 2988939 2989517 R identified by match to protein family HMM PF09482; match to protein family HMM TIGR02555; type III secretion apparatus protein OrgA/MxiK complement(2988939..2989517) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046834.1 CDS SeHA_C3060 NC_011083.1 2989510 2990268 R identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein, YscJ/HrcJ family complement(2989510..2990268) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046835.2 CDS SeHA_C3061 NC_011083.1 2990265 2990570 R hypothetical protein complement(2990265..2990570) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046836.1 CDS eprI NC_011083.1 2990589 2990831 R identified by match to protein family HMM PF09392; match to protein family HMM TIGR02105; type III secretion apparatus needle protein complement(2990589..2990831) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046837.2 CDS eprH NC_011083.1 2990856 2992034 R identified by match to protein family HMM PF09480; match to protein family HMM TIGR02554; type III secretion apparatus protein PrgH/EprH complement(2990856..2992034) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046838.1 CDS SeHA_C3064 NC_011083.1 2992350 2993279 D identified by match to protein family HMM PF00165; transcriptional regulator HilD 2992350..2993279 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046839.1 CDS SeHA_C3065 NC_011083.1 2994370 2996031 D Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 2994370..2996031 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046840.1 CDS SeHA_C3066 NC_011083.1 2996049 2996531 D identified by match to protein family HMM PF01464; invasion protein IagB 2996049..2996531 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046841.1 CDS SeHA_C3069 NC_011083.1 2998203 2998595 R identified by match to protein family HMM PF05932; secretion chaperone complement(2998203..2998595) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046842.1 CDS SeHA_C3070 NC_011083.1 2998622 2998846 R hypothetical protein complement(2998622..2998846) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046843.1 CDS SeHA_C3071 NC_011083.1 2998926 2999174 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2998926..2999174) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046844.1 CDS SeHA_C3072 NC_011083.1 2999193 3001205 R identified by match to protein family HMM PF09052; cell invasion protein SipA complement(2999193..3001205) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083697.1 CDS SeHA_C3073 NC_011083.1 3001269 3002300 R type III effector protein IpaD/SipD/SspD complement(3001269..3002300) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083698.1 CDS SeHA_C3074 NC_011083.1 3002371 3003600 R cell invasion protein SipC complement(3002371..3003600) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046845.1 CDS SeHA_C3075 NC_011083.1 3003628 3005409 R identified by match to protein family HMM PF03518; cell invasion protein SipB complement(3003628..3005409) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046846.1 CDS SeHA_C3076 NC_011083.1 3005412 3005909 R identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD complement(3005412..3005909) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046847.1 CDS SeHA_C3077 NC_011083.1 3006047 3007117 R Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS complement(3006047..3007117) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046848.1 CDS epaR NC_011083.1 3007104 3007895 R identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT complement(3007104..3007895) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046849.1 CDS SeHA_C3079 NC_011083.1 3007899 3008159 R identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403; secretory protein EpaQ complement(3007899..3008159) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046850.1 CDS spaP NC_011083.1 3008185 3008859 R part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP complement(3008185..3008859) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046851.1 CDS epaO NC_011083.1 3008849 3009760 R involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO complement(3008849..3009760) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046852.1 CDS SeHA_C3082 NC_011083.1 3009760 3010770 R identified by match to protein family HMM PF02510; antigen presentation protein SpaN complement(3009760..3010770) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046853.1 CDS SeHA_C3083 NC_011083.1 3010770 3011213 R identified by match to protein family HMM PF02090; surface presentation of antigens protein SpaM complement(3010770..3011213) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046854.1 CDS SeHA_C3084 NC_011083.1 3011191 3012486 R Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL complement(3011191..3012486) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046855.1 CDS SeHA_C3085 NC_011083.1 3012483 3012890 R identified by match to protein family HMM PF03519; surface presentation of antigens protein SpaK complement(3012483..3012890) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046856.1 CDS SeHA_C3086 NC_011083.1 3012914 3014971 R identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399; invasion protein InvA complement(3012914..3014971) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046857.1 CDS SeHA_C3087 NC_011083.1 3014996 3016114 R identified by match to protein family HMM PF02523; match to protein family HMM TIGR02568; invasion protein InvE complement(3014996..3016114) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046858.1 CDS SeHA_C3088 NC_011083.1 3016111 3017781 R identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; type III secretion outer membrane pore, YscC/HrcC family complement(3016111..3017781) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046859.1 CDS SeHA_C3089 NC_011083.1 3017796 3018545 R identified by match to protein family HMM PF00165; invasion protein complement(3017796..3018545) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046860.1 CDS SeHA_C3090 NC_011083.1 3018903 3019346 D identified by match to protein family HMM PF04741; cell adherance/invasion protein 3018903..3019346 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046861.1 CDS SeHA_C3091 NC_011083.1 3020832 3021158 R hypothetical protein complement(3020832..3021158) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046862.1 CDS SeHA_C3092 NC_011083.1 3021856 3022137 D identified by match to protein family HMM PF08681; ABC transporter 3021856..3022137 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046863.1 CDS SeHA_C3093 NC_011083.1 3022137 3022661 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 3022137..3022661 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046864.1 CDS SeHA_C3095 NC_011083.1 3023376 3024032 D identified by match to protein family HMM PF00149; serine/threonine-specific protein phosphatase 2 3023376..3024032 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046865.2 CDS SeHA_C3096 NC_011083.1 3024204 3024725 R hypothetical protein complement(3024204..3024725) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046867.1 CDS mutS NC_011083.1 3024884 3027451 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3024884..3027451 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046868.1 CDS SeHA_C3099 NC_011083.1 3027507 3027887 R hypothetical protein complement(3027507..3027887) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046869.1 CDS SeHA_C3100 NC_011083.1 3027884 3029092 R identified by match to protein family HMM PF07690; major facilitator family transporter protein complement(3027884..3029092) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046870.1 CDS SeHA_C3101 NC_011083.1 3029201 3030112 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3029201..3030112 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046871.1 CDS SeHA_C3102 NC_011083.1 3030154 3031650 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; gluconate transporter GntP complement(3030154..3031650) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046872.1 CDS SeHA_C3103 NC_011083.1 3031647 3032597 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein complement(3031647..3032597) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046873.1 CDS SeHA_C3104 NC_011083.1 3032637 3033413 R identified by match to protein family HMM PF01261; hypothetical protein complement(3032637..3033413) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046874.1 CDS SeHA_C3105 NC_011083.1 3033418 3034056 R identified by match to protein family HMM PF00596; aldolase complement(3033418..3034056) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046875.1 CDS SeHA_C3106 NC_011083.1 3034053 3035315 R identified by match to protein family HMM PF07005; YgbK domain-containing protein complement(3034053..3035315) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046876.1 CDS SeHA_C3107 NC_011083.1 3035309 3036232 R identified by match to protein family HMM PF03446; 6-phosphogluconate dehydrogenase complement(3035309..3036232) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046877.1 CDS SeHA_C3108 NC_011083.1 3036429 3037193 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 3036429..3037193 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046878.1 CDS SeHA_C3109 NC_011083.1 3037212 3037616 R identified by match to protein family HMM PF01047; transcriptional regulator HosA complement(3037212..3037616) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046879.1 CDS kpdB NC_011083.1 3037787 3038380 D identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; 4-hydroxybenzoate decarboxylase subunit B 3037787..3038380 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046880.1 CDS kpdC NC_011083.1 3038380 3039807 D identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 4-hydroxybenzoate decarboxylase subunit C 3038380..3039807 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046881.1 CDS kpdD NC_011083.1 3039818 3040054 D 4-hydroxybenzoate decarboxylase subunit D 3039818..3040054 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046882.1 CDS rpoS NC_011083.1 3040100 3041092 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(3040100..3041092) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046883.1 CDS nlpD NC_011083.1 3041155 3042288 R outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD complement(3041155..3042288) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046884.1 CDS pcm NC_011083.1 3042464 3043090 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(3042464..3043090) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046885.1 CDS surE NC_011083.1 3043084 3043851 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3043084..3043851) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046886.1 CDS truD NC_011083.1 3043826 3044875 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(3043826..3044875) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046887.1 CDS ispF NC_011083.1 3044872 3045351 R 'catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate'; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3044872..3045351) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046888.1 CDS ispD NC_011083.1 3045351 3046061 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3045351..3046061) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046889.1 CDS ftsB NC_011083.1 3046080 3046391 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(3046080..3046391) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046890.2 CDS SeHA_C3122 NC_011083.1 3046582 3046938 R hypothetical protein complement(3046582..3046938) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046891.1 CDS cysC NC_011083.1 3046956 3047561 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(3046956..3047561) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046892.1 CDS cysN NC_011083.1 3047548 3048987 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(3047548..3048987) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046893.1 CDS cysD NC_011083.1 3048997 3049905 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3048997..3049905) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046894.1 CDS SeHA_C3126 NC_011083.1 3050156 3051202 D catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase isozyme conversion aminopeptidase 3050156..3051202 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046895.1 CDS cas2 NC_011083.1 3052976 3053269 R identified by match to protein family HMM PF09707; match to protein family HMM TIGR01873; hypothetical protein complement(3052976..3053269) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046896.1 CDS cas1 NC_011083.1 3053269 3054189 R identified by match to protein family HMM TIGR00287; CRISPR-associated protein Cas1 complement(3053269..3054189) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046897.1 CDS cse3 NC_011083.1 3054186 3054836 R identified by match to protein family HMM PF08798; match to protein family HMM TIGR01907; Cse3 family CRISPR-associated protein complement(3054186..3054836) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046898.1 CDS SeHA_C3134 NC_011083.1 3054818 3055564 R (Cas_Cas5e); identified by match to protein family HMM PF09708; match to protein family HMM TIGR01868; match to protein family HMM TIGR02593; CRISPR-associated protein complement(3054818..3055564) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046899.1 CDS cse4 NC_011083.1 3055575 3056633 R identified by match to protein family HMM PF09344; match to protein family HMM TIGR01869; Cse4 family CRISPR-associated protein complement(3055575..3056633) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046900.1 CDS cse2 NC_011083.1 3056647 3057207 R identified by match to protein family HMM PF09485; match to protein family HMM TIGR02548; Cse2 family CRISPR-associated protein complement(3056647..3057207) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046901.1 CDS cse1 NC_011083.1 3057204 3058760 R identified by match to protein family HMM PF09481; match to protein family HMM TIGR02547; Cse1 family CRISPR-associated protein complement(3057204..3058760) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046902.1 CDS SeHA_C3138 NC_011083.1 3058772 3061435 R identified by match to protein family HMM TIGR01587; crispr-associated helicase Cas3 complement(3058772..3061435) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046903.1 CDS SeHA_C3140 NC_011083.1 3061750 3062832 D Sop effector protein SopD 3061750..3062832 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046904.1 CDS cysH NC_011083.1 3063045 3063779 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3063045..3063779) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046905.1 CDS cysI NC_011083.1 3063855 3065567 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3063855..3065567) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046906.1 CDS cysJ NC_011083.1 3065567 3067366 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha complement(3065567..3067366) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046907.1 CDS queD NC_011083.1 3067790 3068152 D identified by match to protein family HMM PF01242; match to protein family HMM TIGR00039; match to protein family HMM TIGR03367; queuosine biosynthesis protein QueD 3067790..3068152 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046908.1 CDS SeHA_C3145 NC_011083.1 3068242 3069039 R identified by match to protein family HMM PF00753; beta-lactamase domain-containing protein complement(3068242..3069039) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046910.1 CDS SeHA_C3147 NC_011083.1 3070383 3070529 R identified by glimmer; putative; hypothetical protein complement(3070383..3070529) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046911.1 CDS SeHA_C3148 NC_011083.1 3070560 3071231 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(3070560..3071231) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046912.1 CDS eno NC_011083.1 3071367 3072665 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3071367..3072665) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046913.1 CDS pyrG NC_011083.1 3072748 3074385 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3072748..3074385) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046914.1 CDS mazG NC_011083.1 3074613 3075413 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(3074613..3075413) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046915.1 CDS SeHA_C3152 NC_011083.1 3076018 3076605 D identified by match to protein family HMM PF00419; fimbrial subunit 3076018..3076605 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046916.1 CDS SeHA_C3153 NC_011083.1 3076739 3079384 D identified by match to protein family HMM PF00577; fimbrial usher protein 3076739..3079384 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046917.1 CDS SeHA_C3154 NC_011083.1 3079397 3080170 D identified by match to protein family HMM PF00345; chaperone protein PapD 3079397..3080170 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046918.1 CDS SeHA_C3155 NC_011083.1 3080190 3080696 D identified by match to protein family HMM PF00419; fimbrial subunit 3080190..3080696 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046919.1 CDS SeHA_C3156 NC_011083.1 3080711 3081181 D identified by match to protein family HMM PF00419; fimbrial subunit 3080711..3081181 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046920.1 CDS SeHA_C3157 NC_011083.1 3081178 3081714 D identified by match to protein family HMM PF00419; fimbrial subunit 3081178..3081714 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046921.1 CDS SeHA_C3158 NC_011083.1 3081769 3082800 D hypothetical protein 3081769..3082800 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046922.1 CDS SeHA_C3159 NC_011083.1 3083274 3084359 D hypothetical protein 3083274..3084359 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046923.1 CDS SeHA_C3160 NC_011083.1 3084817 3085113 R identified by match to protein family HMM PF05016; RelE/ParE family plasmid stabilization system protein complement(3084817..3085113) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046924.1 CDS SeHA_C3161 NC_011083.1 3085079 3085366 R identified by match to protein family HMM PF01402; match to protein family HMM PF03693; match to protein family HMM TIGR02606; addiction module antidote protein complement(3085079..3085366) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046925.1 CDS relA NC_011083.1 3085519 3087753 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase complement(3085519..3087753) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046926.1 CDS rumA NC_011083.1 3087805 3089100 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3087805..3089100) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046927.1 CDS SeHA_C3164 NC_011083.1 3089158 3091914 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3089158..3091914 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046928.1 CDS SeHA_C3165 NC_011083.1 3091958 3093100 R identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase complement(3091958..3093100) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046929.1 CDS SeHA_C3166 NC_011083.1 3093178 3094518 R identified by match to protein family HMM PF01188; match to protein family HMM TIGR03247; glucarate dehydratase complement(3093178..3094518) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046930.1 CDS SeHA_C3167 NC_011083.1 3094539 3095879 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; glucarate dehydratase complement(3094539..3095879) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046931.1 CDS gudP NC_011083.1 3095876 3097234 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00893; glucarate permease complement(3095876..3097234) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046932.1 CDS SeHA_C3169 NC_011083.1 3097317 3097565 D hypothetical protein 3097317..3097565 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046933.1 CDS SeHA_C3170 NC_011083.1 3097715 3098164 R 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin complement(3097715..3098164) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046934.1 CDS SeHA_C3171 NC_011083.1 3098183 3098965 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(3098183..3098965) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046935.1 CDS SeHA_C3172 NC_011083.1 3098965 3099294 R identified by match to protein family HMM PF04287; hypothetical protein complement(3098965..3099294) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046936.1 CDS SeHA_C3174 NC_011083.1 3099906 3100451 R putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3099906..3100451) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046937.1 CDS queF NC_011083.1 3100520 3101368 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3100520..3101368 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046938.1 CDS SeHA_C3176 NC_011083.1 3101481 3102845 D identified by match to protein family HMM PF03641; lysine decarboxylase family protein 3101481..3102845 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046939.1 CDS SeHA_C3177 NC_011083.1 3102842 3102961 R identified by glimmer; putative; hypothetical protein complement(3102842..3102961) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046940.1 CDS SeHA_C3178 NC_011083.1 3103410 3104699 D identified by match to protein family HMM TIGR00814; serine transporter family protein 3103410..3104699 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046941.1 CDS SeHA_C3179 NC_011083.1 3104758 3106125 D identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 3104758..3106125 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046942.2 CDS xni NC_011083.1 3106236 3107051 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3106236..3107051 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046943.1 CDS fucO NC_011083.1 3107143 3108291 R identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; L-1,2-propanediol oxidoreductase complement(3107143..3108291) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046944.1 CDS fucA NC_011083.1 3108308 3108955 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase complement(3108308..3108955) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046945.1 CDS SeHA_C3183 NC_011083.1 3109109 3109276 R hypothetical protein complement(3109109..3109276) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046946.1 CDS SeHA_C3184 NC_011083.1 3109363 3109485 R identified by glimmer; putative; hypothetical protein complement(3109363..3109485) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046947.1 CDS fucP NC_011083.1 3109511 3110827 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose transporter 3109511..3110827 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046948.1 CDS fucI NC_011083.1 3110859 3112634 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3110859..3112634 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046949.1 CDS fucK NC_011083.1 3112735 3114153 D identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR02628; L-fuculokinase 3112735..3114153 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046950.1 CDS SeHA_C3188 NC_011083.1 3114155 3114577 D identified by match to protein family HMM PF05025; fuscose operon FucU protein 3114155..3114577 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046951.1 CDS SeHA_C3189 NC_011083.1 3114635 3115345 D regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3114635..3115345 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046952.1 CDS SeHA_C3190 NC_011083.1 3115404 3116504 R RNA 2'-O-ribose methyltransferase complement(3115404..3116504) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046953.1 CDS SeHA_C3191 NC_011083.1 3116497 3116892 R identified by match to protein family HMM PF04241; hypothetical protein complement(3116497..3116892) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046954.1 CDS gcvA NC_011083.1 3116911 3117828 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3116911..3117828) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046955.1 CDS SeHA_C3194 NC_011083.1 3118175 3118402 R identified by match to protein family HMM PF06004; hypothetical protein complement(3118175..3118402) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046956.1 CDS csdA NC_011083.1 3118595 3119800 D identified by match to protein family HMM PF00266; match to protein family HMM TIGR03392; cysteine sulfinate desulfinase 3118595..3119800 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046957.1 CDS csdE NC_011083.1 3119800 3120243 D identified by match to protein family HMM PF02657; match to protein family HMM TIGR03391; cysteine desulfurase, sulfur acceptor subunit CsdE 3119800..3120243 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046958.1 CDS SeHA_C3197 NC_011083.1 3120393 3120515 D identified by glimmer; putative; hypothetical protein 3120393..3120515 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046959.1 CDS rarD NC_011083.1 3120516 3121430 D identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; hypothetical protein 3120516..3121430 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046960.1 CDS SeHA_C3199 NC_011083.1 3121482 3122288 R identified by match to protein family HMM PF00899; ThiF family protein complement(3121482..3122288) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083699.1 CDS SeHA_C3200 NC_011083.1 3122398 3123495 R membrane-bound lytic murein transglycosylase A complement(3122398..3123495) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083700.1 CDS SeHA_C3203 NC_011083.1 3123995 3125248 R N-acetylmuramoyl-L-alanine amidase AmiC complement(3123995..3125248) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046961.1 CDS argA NC_011083.1 3125481 3126812 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3125481..3126812 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046962.1 CDS recD NC_011083.1 3126914 3128749 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha complement(3126914..3128749) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046963.1 CDS recB NC_011083.1 3128746 3132291 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta complement(3128746..3132291) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046964.1 CDS SeHA_C3207 NC_011083.1 3132284 3135172 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; protease 3 complement(3132284..3135172) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046965.1 CDS recC NC_011083.1 3135350 3138721 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma complement(3135350..3138721) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046966.1 CDS ppdC NC_011083.1 3138737 3139057 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein complement(3138737..3139057) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046967.1 CDS SeHA_C3210 NC_011083.1 3139042 3139449 R alternate name YgdB, URF2; orf of X03966; 2nd start; ORF_f121; hypothetical protein complement(3139042..3139449) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046968.1 CDS SeHA_C3211 NC_011083.1 3139446 3140009 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein complement(3139446..3140009) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046969.1 CDS SeHA_C3212 NC_011083.1 3140000 3140470 R identified by match to protein family HMM TIGR02532; hypothetical protein complement(3140000..3140470) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046970.1 CDS SeHA_C3213 NC_011083.1 3140480 3140662 D hypothetical protein 3140480..3140662 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046971.1 CDS thyA NC_011083.1 3140655 3141449 R 'ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived'; thymidylate synthase complement(3140655..3141449) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046972.1 CDS lgt NC_011083.1 3141456 3142331 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3141456..3142331) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046973.1 CDS ptsP NC_011083.1 3142547 3144793 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein complement(3142547..3144793) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046974.1 CDS nudH NC_011083.1 3144806 3145336 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3144806..3145336) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046975.1 CDS mutH NC_011083.1 3146019 3146714 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3146019..3146714 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046976.1 CDS SeHA_C3219 NC_011083.1 3146896 3147609 D identified by match to protein family HMM PF03741; hypothetical protein 3146896..3147609 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046977.1 CDS SeHA_C3220 NC_011083.1 3147779 3147997 D identified by match to protein family HMM PF06004; hypothetical protein 3147779..3147997 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046978.1 CDS tas NC_011083.1 3148188 3149228 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 3148188..3149228 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046979.1 CDS SeHA_C3222 NC_011083.1 3149315 3150517 R identified by match to protein family HMM PF07690; lysophospholipid transporter LplT complement(3149315..3150517) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046980.1 CDS SeHA_C3223 NC_011083.1 3150510 3152669 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(3150510..3152669) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046981.1 CDS SeHA_C3227 NC_011083.1 3153138 3153272 R hypothetical protein complement(3153138..3153272) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046982.1 CDS SeHA_C3226 NC_011083.1 3153262 3154290 D controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3153262..3154290 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046983.1 CDS SeHA_C3228 NC_011083.1 3154304 3155323 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator AscG 3154304..3155323 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046984.1 CDS lysA NC_011083.1 3155333 3156595 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(3155333..3156595) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046985.1 CDS SeHA_C3230 NC_011083.1 3156713 3157648 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3156713..3157648 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046986.1 CDS SeHA_C3231 NC_011083.1 3157620 3158327 R identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; racemase complement(3157620..3158327) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046987.1 CDS SeHA_C3232 NC_011083.1 3158441 3159859 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; L-arabinose/proton symport protein complement(3158441..3159859) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046988.1 CDS kduD NC_011083.1 3160213 3160974 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase complement(3160213..3160974) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046989.1 CDS kduI NC_011083.1 3161031 3161867 R '4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate'; 5-keto-4-deoxyuronate isomerase complement(3161031..3161867) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046990.1 CDS SeHA_C3235 NC_011083.1 3161858 3162028 R identified by glimmer; putative; hypothetical protein complement(3161858..3162028) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046991.1 CDS SeHA_C3236 NC_011083.1 3162137 3162259 D identified by glimmer; putative; hypothetical protein 3162137..3162259 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046992.1 CDS SeHA_C3237 NC_011083.1 3162298 3163476 R 'Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis'; acetyl-CoA acetyltransferase complement(3162298..3163476) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046993.1 CDS SeHA_C3238 NC_011083.1 3163599 3164462 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(3163599..3164462) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046994.1 CDS SeHA_C3239 NC_011083.1 3164566 3165021 D identified by match to protein family HMM PF05232; transmembrane pair domain-containing protein 3164566..3165021 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046995.1 CDS SeHA_C3240 NC_011083.1 3165163 3166392 D inner membrane transport protein YqeG 3165163..3166392 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046996.1 CDS SeHA_C3241 NC_011083.1 3166423 3166695 R identified by match to protein family HMM PF02583; hypothetical protein complement(3166423..3166695) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046997.1 CDS SeHA_C3242 NC_011083.1 3166818 3167702 D membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3166818..3167702 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046998.1 CDS SeHA_C3243 NC_011083.1 3167912 3168670 R hypothetical protein complement(3167912..3168670) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002046999.1 CDS SeHA_C3244 NC_011083.1 3168657 3169169 R identified by match to protein family HMM PF07180; hypothetical protein complement(3168657..3169169) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047000.1 CDS SeHA_C3245 NC_011083.1 3169314 3170390 R hypothetical protein complement(3169314..3170390) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047001.1 CDS SeHA_C3246 NC_011083.1 3170387 3171130 R identified by match to protein family HMM PF00345; pili assembly chaperone protein complement(3170387..3171130) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047002.1 CDS SeHA_C3247 NC_011083.1 3171171 3173660 R identified by match to protein family HMM PF00577; fimbrial usher protein complement(3171171..3173660) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047003.1 CDS SeHA_C3248 NC_011083.1 3173780 3174361 R identified by match to protein family HMM PF00419; fimbrial protein complement(3173780..3174361) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047004.1 CDS SeHA_C3249 NC_011083.1 3175080 3175712 R hypothetical protein complement(3175080..3175712) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047005.1 CDS SeHA_C3250 NC_011083.1 3175759 3176295 R identified by match to protein family HMM PF06316; outer membrane protein complement(3175759..3176295) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047006.1 CDS SeHA_C3251 NC_011083.1 3176341 3176526 R hypothetical protein complement(3176341..3176526) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047007.1 CDS SeHA_C3252 NC_011083.1 3176905 3177465 R identified by match to protein family HMM PF01380; 3-hexulose-6-phosphate isomerase complement(3176905..3177465) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047008.1 CDS fabG NC_011083.1 3177480 3178232 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; 3-oxoacyl-(acyl-carrier-protein) reductase complement(3177480..3178232) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047009.1 CDS rpe NC_011083.1 3178355 3178999 R identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase complement(3178355..3178999) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047010.1 CDS SeHA_C3255 NC_011083.1 3179018 3180271 R identified by match to protein family HMM PF03611; PTS system galactitol-specific transporter subunit IIC complement(3179018..3180271) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047011.1 CDS SeHA_C3256 NC_011083.1 3180299 3180472 R PTS system galactitol-specific transporter subunit IIB complement(3180299..3180472) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047012.1 CDS SeHA_C3257 NC_011083.1 3180614 3181093 R identified by match to protein family HMM PF00359; galactitol-specific phosphotransferase enzyme iia component complement(3180614..3181093) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047013.1 CDS SeHA_C3258 NC_011083.1 3181412 3182167 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator complement(3181412..3182167) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047014.1 CDS SeHA_C3259 NC_011083.1 3182550 3183086 D identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; ribose-5-phosphate isomerase B 3182550..3183086 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047015.1 CDS SeHA_C3260 NC_011083.1 3183090 3184460 D identified by match to protein family HMM PF03611; galacitol pts, eiic 3183090..3184460 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047016.1 CDS SeHA_C3261 NC_011083.1 3184482 3184766 D identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB 3184482..3184766 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047017.1 CDS SeHA_C3262 NC_011083.1 3184774 3185232 D identified by match to protein family HMM PF00359; PTS system mannitol-specific transporter subunit IICBA 3184774..3185232 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047018.1 CDS SeHA_C3263 NC_011083.1 3185406 3186371 R identified by match to protein family HMM PF04198; DeoR family transcriptional regulator complement(3185406..3186371) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047019.1 CDS SeHA_C3264 NC_011083.1 3186585 3186758 R arsenate reductase complement(3186585..3186758) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047020.1 CDS SeHA_C3265 NC_011083.1 3186838 3187260 R regulates the expression of of the arsRBC involved in resistance to arsenic; DNA-binding transcriptional repressor ArsR complement(3186838..3187260) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047021.1 CDS SeHA_C3266 NC_011083.1 3187343 3188446 R identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family complement(3187343..3188446) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047022.1 CDS SeHA_C3268 NC_011083.1 3188764 3189516 R identified by match to protein family HMM PF01476; match to protein family HMM PF01551; hypothetical protein complement(3188764..3189516) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047023.1 CDS SeHA_C3269 NC_011083.1 3189602 3189736 D identified by glimmer; putative; hypothetical protein 3189602..3189736 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047024.1 CDS idi NC_011083.1 3189787 3190332 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3189787..3190332 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047025.1 CDS lysS NC_011083.1 3190408 3191925 R 'class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1'; lysyl-tRNA synthetase complement(3190408..3191925) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083701.1 CDS prfB NC_011083.1 3191935 3192816 R peptide chain release factor complement(3191935..3192816) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047026.1 CDS recJ NC_011083.1 3193138 3194871 R 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ complement(3193138..3194871) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047027.1 CDS SeHA_C3274 NC_011083.1 3194877 3195590 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC complement(3194877..3195590) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047028.1 CDS xerD NC_011083.1 3195614 3196510 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(3195614..3196510) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047029.1 CDS SeHA_C3276 NC_011083.1 3196623 3197144 D 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic'; flavodoxin FldB 3196623..3197144 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047030.1 CDS SeHA_C3277 NC_011083.1 3197197 3197556 R identified by match to protein family HMM PF07254; hypothetical protein complement(3197197..3197556) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047031.1 CDS SeHA_C3279 NC_011083.1 3197591 3197857 R identified by match to protein family HMM PF03937; hypothetical protein complement(3197591..3197857) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047032.1 CDS SeHA_C3278 NC_011083.1 3197856 3198092 D hypothetical protein 3197856..3198092 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047033.1 CDS SeHA_C3280 NC_011083.1 3198107 3199087 D physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; global regulator 3198107..3199087 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047034.1 CDS SeHA_C3281 NC_011083.1 3199203 3199862 R identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin-3 complement(3199203..3199862) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047035.1 CDS SeHA_C3282 NC_011083.1 3200026 3200337 R identified by match to protein family HMM PF04266; hypothetical protein complement(3200026..3200337) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047036.1 CDS SeHA_C3283 NC_011083.1 3200496 3201929 D identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase 3200496..3201929 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047037.1 CDS SeHA_C3284 NC_011083.1 3201977 3202870 R hypothetical protein complement(3201977..3202870) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047038.1 CDS gcvP NC_011083.1 3203326 3206199 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3203326..3206199) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047039.1 CDS gcvH NC_011083.1 3206362 3206751 R 'part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor'; glycine cleavage system protein H complement(3206362..3206751) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047040.1 CDS gcvT NC_011083.1 3206777 3207871 R 'catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein'; glycine cleavage system aminomethyltransferase T complement(3206777..3207871) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047041.1 CDS SeHA_C3288 NC_011083.1 3207912 3208052 D identified by glimmer; putative; hypothetical protein 3207912..3208052 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047042.1 CDS SeHA_C3289 NC_011083.1 3208326 3209528 R identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; hypothetical protein complement(3208326..3209528) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047043.1 CDS ubiH NC_011083.1 3209654 3210832 R 'Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone'; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3209654..3210832) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047044.1 CDS pepP NC_011083.1 3210829 3212145 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II complement(3210829..3212145) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047045.1 CDS SeHA_C3292 NC_011083.1 3212171 3212749 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(3212171..3212749) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047046.1 CDS SeHA_C3293 NC_011083.1 3212916 3213245 D identified by match to protein family HMM PF05164; Z-ring-associated protein 3212916..3213245 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047047.1 CDS SeHA_C3295 NC_011083.1 3213491 3214087 D ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 3213491..3214087 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047048.1 CDS serA NC_011083.1 3214468 3215700 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(3214468..3215700) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083702.1 CDS rpiA NC_011083.1 3215967 3216626 R ribose 5-phosphate isomerase A complement(3215967..3216626) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047049.1 CDS SeHA_C3299 NC_011083.1 3216780 3217673 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3216780..3217673 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047051.1 CDS SeHA_C3301 NC_011083.1 3217939 3218685 R identified by match to protein family HMM PF04402; hypothetical protein complement(3217939..3218685) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047052.1 CDS SeHA_C3302 NC_011083.1 3218779 3219414 R Involved in the export of arginine; arginine exporter protein complement(3218779..3219414) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047053.1 CDS SeHA_C3303 NC_011083.1 3219488 3219604 R identified by glimmer; putative; hypothetical protein complement(3219488..3219604) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047054.1 CDS SeHA_C3304 NC_011083.1 3219615 3220475 R participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS complement(3219615..3220475) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047055.1 CDS fbaA NC_011083.1 3220702 3221781 R 'catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate'; fructose-bisphosphate aldolase complement(3220702..3221781) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047056.1 CDS pgk NC_011083.1 3221883 3223046 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3221883..3223046) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047057.1 CDS epd NC_011083.1 3223068 3224114 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(3223068..3224114) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047058.1 CDS SeHA_C3308 NC_011083.1 3224488 3224913 D identified by match to protein family HMM PF03479; hypothetical protein 3224488..3224913 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047059.1 CDS SeHA_C3309 NC_011083.1 3224939 3225517 D signal transduction histidine kinase, LytS 3224939..3225517 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047060.1 CDS SeHA_C3310 NC_011083.1 3225518 3226225 D identified by match to protein family HMM PF02361; ABC transporter permease 3225518..3226225 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047061.1 CDS SeHA_C3311 NC_011083.1 3226303 3226890 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3226303..3226890 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047062.1 CDS SeHA_C3312 NC_011083.1 3226884 3227540 D identified by match to protein family HMM PF00005; cobalt ABC transporter ATPase 3226884..3227540 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047063.1 CDS tktA NC_011083.1 3227584 3229575 R 'catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase'; transketolase complement(3227584..3229575) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047064.1 CDS SeHA_C3314 NC_011083.1 3229901 3230881 R identified by match to protein family HMM PF01609; IS5 transposase complement(3229901..3230881) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047065.1 CDS SeHA_C3315 NC_011083.1 3231050 3231808 D identified by match to protein family HMM PF01435; peptidase M48, Ste24p 3231050..3231808 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047066.1 CDS speB NC_011083.1 3231909 3232829 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3231909..3232829) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047067.1 CDS SeHA_C3317 NC_011083.1 3233034 3233924 R identified by match to protein family HMM PF00561; hydrolase or acyltransferase complement(3233034..3233924) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047068.1 CDS SeHA_C3318 NC_011083.1 3234204 3234677 R identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; mannitol dehydrogenase complement(3234204..3234677) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047069.1 CDS SeHA_C3319 NC_011083.1 3234716 3235723 R identified by match to protein family HMM PF02615; ureidoglycolate dehydrogenase complement(3234716..3235723) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047070.1 CDS SeHA_C3320 NC_011083.1 3235737 3236753 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; hypothetical protein complement(3235737..3236753) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047071.1 CDS SeHA_C3321 NC_011083.1 3236756 3238228 R identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase complement(3236756..3238228) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047072.1 CDS SeHA_C3323 NC_011083.1 3239461 3240210 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; Uxu operon transcriptional regulator complement(3239461..3240210) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047073.1 CDS SeHA_C3324 NC_011083.1 3240415 3241146 R hypothetical protein complement(3240415..3241146) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047074.2 CDS speA NC_011083.1 3241290 3243266 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(3241290..3243266) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047075.1 CDS SeHA_C3326 NC_011083.1 3243275 3243406 R hypothetical protein complement(3243275..3243406) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047076.1 CDS SeHA_C3327 NC_011083.1 3243740 3243907 D hypothetical protein 3243740..3243907 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047077.1 CDS metK NC_011083.1 3244056 3245210 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3244056..3245210 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047078.1 CDS SeHA_C3329 NC_011083.1 3245238 3245363 R identified by glimmer; putative; hypothetical protein complement(3245238..3245363) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047079.1 CDS galP NC_011083.1 3245703 3247097 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; galactose-proton symporter 3245703..3247097 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047080.1 CDS sprT NC_011083.1 3247176 3247673 D identified by match to protein family HMM PF03926; hypothetical protein 3247176..3247673 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047081.1 CDS endA NC_011083.1 3247769 3248476 D identified by match to protein family HMM PF04231; endonuclease I 3247769..3248476 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047082.2 CDS SeHA_C3333 NC_011083.1 3248553 3249284 D 'in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase'; 16S ribosomal RNA methyltransferase RsmE 3248553..3249284 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047083.1 CDS gshB NC_011083.1 3249304 3250251 D 'catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione'; glutathione synthetase 3249304..3250251 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047084.1 CDS SeHA_C3335 NC_011083.1 3250467 3251030 D identified by match to protein family HMM PF02622; hypothetical protein 3250467..3251030 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047085.1 CDS SeHA_C3336 NC_011083.1 3251030 3251446 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; holliday junction resolvase-like protein 3251030..3251446 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047086.1 CDS SeHA_C3337 NC_011083.1 3251493 3252179 R identified by match to protein family HMM PF09339; regulatory protein IclR complement(3251493..3252179) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047087.1 CDS SeHA_C3338 NC_011083.1 3252312 3253292 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein complement(3252312..3253292) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047088.1 CDS SeHA_C3339 NC_011083.1 3253310 3254014 D identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; alanine racemase family protein 3253310..3254014 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047089.1 CDS SeHA_C3340 NC_011083.1 3254033 3254599 D identified by match to protein family HMM PF02325; hypothetical protein 3254033..3254599 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047090.1 CDS SeHA_C3341 NC_011083.1 3254596 3254886 D identified by match to protein family HMM PF02594; match to protein family HMM TIGR00251; hypothetical protein 3254596..3254886 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047091.1 CDS rdgB NC_011083.1 3254894 3255487 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3254894..3255487 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047092.1 CDS SeHA_C3343 NC_011083.1 3255480 3256616 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3255480..3256616 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047093.1 CDS SeHA_C3344 NC_011083.1 3256708 3257715 R identified by match to protein family HMM PF06717; hypothetical protein complement(3256708..3257715) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047094.1 CDS ansB NC_011083.1 3257848 3258894 R 'catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis'; L-asparaginase II complement(3257848..3258894) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047095.1 CDS SeHA_C3346 NC_011083.1 3258913 3259065 R hypothetical protein complement(3258913..3259065) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047096.1 CDS SeHA_C3347 NC_011083.1 3259083 3259802 R hypothetical protein complement(3259083..3259802) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047097.1 CDS SeHA_C3348 NC_011083.1 3259852 3260178 R identified by match to protein family HMM PF04320; hypothetical protein complement(3259852..3260178) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047098.1 CDS trmB NC_011083.1 3260178 3260945 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3260178..3260945) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047099.1 CDS mutY NC_011083.1 3261052 3262104 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; adenine DNA glycosylase 3261052..3262104 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047100.1 CDS SeHA_C3351 NC_011083.1 3262132 3262407 D identified by match to protein family HMM PF04362; hypothetical protein 3262132..3262407 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047101.1 CDS mltC NC_011083.1 3262520 3263605 D 'Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues'; murein transglycosylase C 3262520..3263605 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047102.1 CDS SeHA_C3353 NC_011083.1 3263670 3263795 R identified by glimmer; putative; hypothetical protein complement(3263670..3263795) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047103.1 CDS nupG NC_011083.1 3263822 3265078 D identified by match to protein family HMM PF03825; match to protein family HMM TIGR00889; nucleoside permease NupG 3263822..3265078 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047104.1 CDS speC NC_011083.1 3265140 3267275 R identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase complement(3265140..3267275) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047105.1 CDS SeHA_C3356 NC_011083.1 3267548 3267661 D identified by glimmer; putative; hypothetical protein 3267548..3267661 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047106.1 CDS SeHA_C3357 NC_011083.1 3267700 3268407 D identified by match to protein family HMM PF04474; hypothetical protein 3267700..3268407 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047107.1 CDS SeHA_C3359 NC_011083.1 3268850 3268975 D identified by glimmer; putative; hypothetical protein 3268850..3268975 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047108.1 CDS SeHA_C3360 NC_011083.1 3269192 3270517 R identified by match to protein family HMM PF02550; 4-hydroxybutyrate CoA-transferase complement(3269192..3270517) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047109.1 CDS SeHA_C3361 NC_011083.1 3270542 3271069 R identified by match to protein family HMM PF01575; hypothetical protein complement(3270542..3271069) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047110.1 CDS SeHA_C3362 NC_011083.1 3271093 3271935 R identified by match to protein family HMM PF03328; HpcH/HpaI aldolase/citrate lyase family protein complement(3271093..3271935) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047111.1 CDS SeHA_C3363 NC_011083.1 3272027 3272905 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; hypothetical protein 3272027..3272905 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047112.1 CDS SeHA_C3364 NC_011083.1 3272953 3274692 R identified by match to protein family HMM PF00884; arylsulfatase complement(3272953..3274692) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047113.1 CDS SeHA_C3365 NC_011083.1 3274761 3275945 R identified by match to protein family HMM PF04055; arylsulfatase-activating protein AtsB complement(3274761..3275945) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047114.1 CDS SeHA_C3366 NC_011083.1 3276457 3277140 D identified by match to protein family HMM PF00196; LysR family transcriptional regulator 3276457..3277140 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047115.1 CDS SeHA_C3367 NC_011083.1 3277244 3277801 R hypothetical protein complement(3277244..3277801) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047116.1 CDS SeHA_C3368 NC_011083.1 3277779 3279278 R identified by match to protein family HMM PF00324; transporter complement(3277779..3279278) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047117.1 CDS SeHA_C3369 NC_011083.1 3279271 3279414 R identified by glimmer; putative; hypothetical protein complement(3279271..3279414) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047118.1 CDS SeHA_C3370 NC_011083.1 3279487 3279861 R identified by match to protein family HMM PF05899; hypothetical protein complement(3279487..3279861) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047119.1 CDS SeHA_C3371 NC_011083.1 3279876 3281177 R identified by match to protein family HMM PF01266; tyramine oxidase complement(3279876..3281177) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047120.1 CDS SeHA_C3372 NC_011083.1 3281339 3282823 D identified by match to protein family HMM PF00171; phenylacetaldehyde dehydrogenase 3281339..3282823 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047122.1 CDS iraD NC_011083.1 3282959 3283168 R inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein complement(3282959..3283168) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047123.1 CDS SeHA_C3375 NC_011083.1 3283339 3283824 R identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hypothetical protein complement(3283339..3283824) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047124.1 CDS SeHA_C3376 NC_011083.1 3284132 3284287 D hypothetical protein 3284132..3284287 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047125.1 CDS SeHA_C3377 NC_011083.1 3284550 3285473 R identified by match to protein family HMM PF01522; xylanase/chitin deacetylase complement(3284550..3285473) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047126.1 CDS SeHA_C3378 NC_011083.1 3285512 3286390 R identified by match to protein family HMM PF00795; amidohydrolase complement(3285512..3286390) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047127.1 CDS SeHA_C3379 NC_011083.1 3286406 3286543 D identified by glimmer; putative; hypothetical protein 3286406..3286543 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047128.1 CDS exuT NC_011083.1 3286786 3288090 R identified by match to protein family HMM PF07690; hexuronate transporter complement(3286786..3288090) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047129.1 CDS uxuA NC_011083.1 3288495 3289679 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3288495..3289679 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047130.1 CDS SeHA_C3382 NC_011083.1 3289790 3291262 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 3289790..3291262 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047131.1 CDS uxaC NC_011083.1 3291274 3292686 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3291274..3292686 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047132.1 CDS SeHA_C3384 NC_011083.1 3292986 3294044 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(3292986..3294044) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047134.1 CDS SeHA_C3386 NC_011083.1 3294714 3296570 R catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3294714..3296570) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047135.1 CDS yghU NC_011083.1 3296797 3297663 D YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; glutathione S-transferase YghU 3296797..3297663 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047136.1 CDS SeHA_C3388 NC_011083.1 3297731 3298441 R molybdate ABC transporter substrate-binding protein complement(3297731..3298441) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047137.1 CDS SeHA_C3389 NC_011083.1 3298441 3299493 R identified by match to protein family HMM PF01497; periplasmic binding protein complement(3298441..3299493) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047138.1 CDS hypC NC_011083.1 3299569 3299817 R identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase 2 accessory protein HypG complement(3299569..3299817) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047139.1 CDS hypA NC_011083.1 3299845 3300186 R plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF complement(3299845..3300186) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047140.1 CDS SeHA_C3392 NC_011083.1 3300179 3300667 R hydrogenase 2-specific chaperone complement(3300179..3300667) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047141.1 CDS hybD NC_011083.1 3300660 3301154 R protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase complement(3300660..3301154) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047142.1 CDS hybC NC_011083.1 3301154 3302857 R involved in hydrogen uptake; hydrogenase 2 large subunit complement(3301154..3302857) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047143.1 CDS hybB NC_011083.1 3302854 3304032 R 'HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits'; hydrogenase 2 b cytochrome subunit complement(3302854..3304032) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047144.1 CDS hybA NC_011083.1 3304022 3305008 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA complement(3304022..3305008) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047145.1 CDS hyb0 NC_011083.1 3305011 3306129 R involved in hydrogen uptake; hydrogenase 2 small subunit complement(3305011..3306129) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047146.1 CDS SeHA_C3398 NC_011083.1 3306137 3306322 R hypothetical protein complement(3306137..3306322) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047147.1 CDS SeHA_C3399 NC_011083.1 3306319 3306606 R hypothetical protein complement(3306319..3306606) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047148.1 CDS SeHA_C3400 NC_011083.1 3306691 3308334 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(3306691..3308334) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047149.1 CDS SeHA_C3401 NC_011083.1 3308641 3309135 R identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645; hypothetical protein complement(3308641..3309135) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047150.1 CDS SeHA_C3402 NC_011083.1 3309206 3309709 R hypothetical protein complement(3309206..3309709) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047151.1 CDS SeHA_C3403 NC_011083.1 3309813 3310223 D hypothetical protein 3309813..3310223 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047152.1 CDS SeHA_C3404 NC_011083.1 3310210 3310614 D hypothetical protein 3310210..3310614 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047153.1 CDS SeHA_C3405 NC_011083.1 3310738 3311622 D identified by match to protein family HMM PF00106; oxidoreductase 3310738..3311622 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047154.1 CDS exbD NC_011083.1 3311735 3312160 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD complement(3311735..3312160) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047155.1 CDS exbB NC_011083.1 3312167 3312901 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB complement(3312167..3312901) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047156.1 CDS SeHA_C3408 NC_011083.1 3312894 3313031 R hypothetical protein complement(3312894..3313031) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047157.1 CDS metC NC_011083.1 3313153 3314340 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3313153..3314340 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047158.1 CDS SeHA_C3410 NC_011083.1 3314480 3315139 D identified by match to protein family HMM PF09335; hypothetical protein 3314480..3315139 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083703.1 CDS SeHA_C3411 NC_011083.1 3315203 3316102 R AraC family transcriptional regulator complement(3315203..3316102) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047159.1 CDS SeHA_C3412 NC_011083.1 3316092 3316208 R identified by glimmer; putative; hypothetical protein complement(3316092..3316208) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047160.1 CDS SeHA_C3413 NC_011083.1 3316295 3317458 D identified by match to protein family HMM PF00465; alcohol dehydrogenase YqhD 3316295..3317458 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047161.1 CDS dkgA NC_011083.1 3317564 3318391 D 'methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate'; 2,5-diketo-D-gluconate reductase A 3317564..3318391 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047162.1 CDS SeHA_C3416 NC_011083.1 3320087 3320542 D identified by match to protein family HMM PF01230; histidine triad (HIT) protein 3320087..3320542 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047163.1 CDS SeHA_C3417 NC_011083.1 3320700 3320894 R identified by glimmer; putative; hypothetical protein complement(3320700..3320894) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047164.1 CDS SeHA_C3418 NC_011083.1 3321097 3323268 R identified by match to protein family HMM PF04055; match to protein family HMM PF08497; hypothetical protein complement(3321097..3323268) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047165.1 CDS SeHA_C3419 NC_011083.1 3323756 3324739 D identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap transporter solute receptor 3323756..3324739 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047166.1 CDS SeHA_C3420 NC_011083.1 3324782 3325264 D identified by match to protein family HMM PF04290; tripartite ATP-independent periplasmic 3324782..3325264 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047167.1 CDS SeHA_C3421 NC_011083.1 3325275 3326582 D identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; hypothetical protein 3325275..3326582 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047168.1 CDS SeHA_C3422 NC_011083.1 3326627 3328039 R identified by match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; repressor protein for FtsI complement(3326627..3328039) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047169.1 CDS plsC NC_011083.1 3328113 3328850 R identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3328113..3328850) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047170.1 CDS parC NC_011083.1 3329107 3331365 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3329107..3331365) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047171.1 CDS SeHA_C3425 NC_011083.1 3331476 3332342 R identified by match to protein family HMM PF00165; match to protein family HMM PF06445; transcription activator, effector binding complement(3331476..3332342) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047172.1 CDS SeHA_C3426 NC_011083.1 3332414 3332806 R identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein complement(3332414..3332806) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047173.1 CDS SeHA_C3427 NC_011083.1 3332958 3333617 D response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3332958..3333617 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047174.1 CDS SeHA_C3428 NC_011083.1 3333614 3334963 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein QseC 3333614..3334963 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047175.1 CDS SeHA_C3429 NC_011083.1 3335070 3335651 D identified by match to protein family HMM PF02525; NADPH specific quinone oxidoreductase 3335070..3335651 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047176.1 CDS SeHA_C3430 NC_011083.1 3335683 3335997 D identified by match to protein family HMM PF03992; hypothetical protein 3335683..3335997 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047177.1 CDS SeHA_C3431 NC_011083.1 3336002 3336118 R identified by glimmer; putative; hypothetical protein complement(3336002..3336118) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047178.1 CDS parE NC_011083.1 3336122 3338014 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3336122..3338014) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047179.1 CDS yqiA NC_011083.1 3338042 3338623 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA complement(3338042..3338623) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047180.1 CDS icc NC_011083.1 3338623 3339450 R identified by match to protein family HMM PF00149; match to protein family HMM PF08413; cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3338623..3339450) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047181.1 CDS SeHA_C3435 NC_011083.1 3339475 3339897 R identified by match to protein family HMM PF06853; hypothetical protein complement(3339475..3339897) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047182.1 CDS nudF NC_011083.1 3339894 3340526 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF complement(3339894..3340526) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047183.1 CDS tolC NC_011083.1 3340733 3342202 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3340733..3342202 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047184.1 CDS SeHA_C3438 NC_011083.1 3342415 3343086 D hypothetical protein 3342415..3343086 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047185.1 CDS SeHA_C3439 NC_011083.1 3343092 3344255 D identified by match to protein family HMM PF03738; glutathionylspermidine synthase 3343092..3344255 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047186.1 CDS SeHA_C3440 NC_011083.1 3344317 3345105 R 'seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine'; hypothetical protein complement(3344317..3345105) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047187.1 CDS SeHA_C3441 NC_011083.1 3345246 3346019 D identified by match to protein family HMM PF02535; zinc transporter ZupT 3345246..3346019 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047188.1 CDS SeHA_C3442 NC_011083.1 3346086 3346262 R hypothetical protein complement(3346086..3346262) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047189.1 CDS SeHA_C3443 NC_011083.1 3346662 3348458 D identified by match to protein family HMM PF05935; arylsulfate sulfotransferase 3346662..3348458 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047190.1 CDS SeHA_C3444 NC_011083.1 3348478 3349149 D identified by match to protein family HMM PF01323; disulfide isomerase 3348478..3349149 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047191.1 CDS SeHA_C3445 NC_011083.1 3349164 3349841 D disulfide oxidoreductase 3349164..3349841 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047192.1 CDS ribB NC_011083.1 3350011 3350664 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3350011..3350664) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047193.1 CDS SeHA_C3448 NC_011083.1 3351101 3351397 D identified by match to protein family HMM PF04380; hypothetical protein 3351101..3351397 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047194.1 CDS SeHA_C3449 NC_011083.1 3351471 3351680 R Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS complement(3351471..3351680) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047195.1 CDS SeHA_C3450 NC_011083.1 3351777 3351926 R hypothetical protein complement(3351777..3351926) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047196.1 CDS SeHA_C3451 NC_011083.1 3351938 3352558 D identified by match to protein family HMM PF07290; hypothetical protein 3351938..3352558 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047197.1 CDS SeHA_C3452 NC_011083.1 3352577 3354256 D identified by match to protein family HMM PF01145; hypothetical protein 3352577..3354256 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047198.1 CDS SeHA_C3454 NC_011083.1 3354715 3356148 R 'catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose'; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3354715..3356148) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047199.1 CDS SeHA_C3455 NC_011083.1 3356196 3359039 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3356196..3359039) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047200.1 CDS SeHA_C3456 NC_011083.1 3359157 3360458 R identified by match to protein family HMM PF01928; match to protein family HMM PF05235; adenylate cyclase complement(3359157..3360458) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047201.1 CDS SeHA_C3457 NC_011083.1 3360700 3361314 D identified by match to protein family HMM PF08239; signal transduction protein 3360700..3361314 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047202.1 CDS cca NC_011083.1 3361377 3362618 D 'catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases'; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3361377..3362618 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047203.1 CDS bacA NC_011083.1 3362723 3363544 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3362723..3363544) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047204.1 CDS folB NC_011083.1 3363642 3364001 R 'catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin'; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3363642..3364001) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047205.1 CDS SeHA_C3461 NC_011083.1 3364108 3364719 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3364108..3364719 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047206.1 CDS gcp NC_011083.1 3364970 3365983 R 'in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity'; DNA-binding/iron metalloprotein/AP endonuclease complement(3364970..3365983) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047207.1 CDS rpsU NC_011083.1 3366211 3366426 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3366211..3366426 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047208.1 CDS dnaG NC_011083.1 3366662 3368407 D synthesizes RNA primers at the replication forks; DNA primase 3366662..3368407 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047209.1 CDS rpoD NC_011083.1 3368557 3370404 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3368557..3370404 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047210.1 CDS SeHA_C3466 NC_011083.1 3370528 3371034 R identified by match to protein family HMM PF03167; G/U mismatch-specific DNA glycosylase complement(3370528..3371034) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047211.1 CDS SeHA_C3468 NC_011083.1 3371292 3371414 R identified by glimmer; putative; hypothetical protein complement(3371292..3371414) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047212.1 CDS SeHA_C3469 NC_011083.1 3371457 3371618 D hypothetical protein 3371457..3371618 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047213.1 CDS SeHA_C3470 NC_011083.1 3372207 3373910 R phage protein complement(3372207..3373910) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047214.1 CDS SeHA_C3471 NC_011083.1 3373910 3374455 R phage protein complement(3373910..3374455) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047215.1 CDS SeHA_C3472 NC_011083.1 3374427 3375152 R hypothetical protein complement(3374427..3375152) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047216.1 CDS SeHA_C3473 NC_011083.1 3375142 3375672 R identified by match to protein family HMM PF02413; phage tail fiber assembly protein complement(3375142..3375672) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047217.1 CDS SeHA_C3474 NC_011083.1 3375675 3377687 R identified by match to protein family HMM PF03406; phage tail fiber repeat complement(3375675..3377687) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047218.1 CDS SeHA_C3475 NC_011083.1 3377697 3378284 R phage protein complement(3377697..3378284) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047219.1 CDS SeHA_C3476 NC_011083.1 3378277 3379461 R phage protein complement(3378277..3379461) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047220.1 CDS SeHA_C3477 NC_011083.1 3379458 3379787 R phage protein complement(3379458..3379787) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047221.1 CDS SeHA_C3478 NC_011083.1 3379784 3381754 R identified by match to protein family HMM TIGR01760; phage tail tape measure protein, TP901 family, core region complement(3379784..3381754) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047222.1 CDS SeHA_C3479 NC_011083.1 3381942 3382199 R phage protein complement(3381942..3382199) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047223.1 CDS SeHA_C3480 NC_011083.1 3382186 3382374 R identified by glimmer; putative; hypothetical protein complement(3382186..3382374) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047224.1 CDS SeHA_C3481 NC_011083.1 3382346 3382678 R hypothetical protein complement(3382346..3382678) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047225.1 CDS SeHA_C3482 NC_011083.1 3382678 3383019 R hypothetical protein complement(3382678..3383019) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047226.1 CDS SeHA_C3483 NC_011083.1 3383016 3383309 R identified by match to protein family HMM PF04550; phage holin family 2 complement(3383016..3383309) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047227.1 CDS SeHA_C3484 NC_011083.1 3383319 3383774 R phage protein complement(3383319..3383774) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047228.1 CDS SeHA_C3485 NC_011083.1 3383771 3384898 R tail sheath complement(3383771..3384898) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047229.1 CDS SeHA_C3486 NC_011083.1 3384895 3385602 R hypothetical protein complement(3384895..3385602) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047230.1 CDS SeHA_C3487 NC_011083.1 3385599 3386105 R hypothetical protein complement(3385599..3386105) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047231.1 CDS SeHA_C3488 NC_011083.1 3386102 3386605 R identified by match to protein family HMM PF05926; phage head completion protein complement(3386102..3386605) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047232.1 CDS SeHA_C3489 NC_011083.1 3386651 3386845 R hypothetical protein complement(3386651..3386845) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047233.1 CDS SeHA_C3490 NC_011083.1 3386849 3387553 R identified by match to protein family HMM PF05944; phage terminase subunit complement(3386849..3387553) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047234.1 CDS SeHA_C3491 NC_011083.1 3387557 3388579 R identified by match to protein family HMM PF05125; match to protein family HMM TIGR01551; phage major capsid protein, P2 family complement(3387557..3388579) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047235.1 CDS SeHA_C3492 NC_011083.1 3388641 3389441 R phage capsid scaffolding protein complement(3388641..3389441) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047236.1 CDS SeHA_C3493 NC_011083.1 3389602 3391377 D identified by match to protein family HMM PF03237; match to protein family HMM PF06056; hypothetical protein 3389602..3391377 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047237.1 CDS SeHA_C3494 NC_011083.1 3391374 3392435 D identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540; phage portal protein, pbsx family 3391374..3392435 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047238.1 CDS SeHA_C3495 NC_011083.1 3392729 3392935 R identified by glimmer; putative; hypothetical protein complement(3392729..3392935) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047239.1 CDS SeHA_C3496 NC_011083.1 3393055 3395076 R identified by match to protein family HMM PF05840; replication gene A protein complement(3393055..3395076) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083704.1 CDS SeHA_C3497 NC_011083.1 3395073 3395933 R DNA adenine methylase complement(3395073..3395933) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047240.1 CDS SeHA_C3498 NC_011083.1 3395923 3396252 R gp91 complement(3395923..3396252) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047241.1 CDS SeHA_C3499 NC_011083.1 3396249 3396845 R identified by match to protein family HMM PF00929; exonuclease complement(3396249..3396845) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047242.1 CDS SeHA_C3500 NC_011083.1 3396836 3397090 R identified by glimmer; putative; hypothetical protein complement(3396836..3397090) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047243.1 CDS SeHA_C3501 NC_011083.1 3397158 3397559 R identified by glimmer; putative; hypothetical protein complement(3397158..3397559) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047244.1 CDS SeHA_C3502 NC_011083.1 3397632 3397850 D identified by glimmer; putative; hypothetical protein 3397632..3397850 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047245.1 CDS SeHA_C3503 NC_011083.1 3397974 3398201 R identified by glimmer; putative; hypothetical protein complement(3397974..3398201) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047246.1 CDS SeHA_C3504 NC_011083.1 3398211 3398714 R identified by match to protein family HMM PF06892; regulatory protein CII bacteriophage 186 complement(3398211..3398714) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047247.1 CDS SeHA_C3505 NC_011083.1 3399270 3399683 D repressor protein 3399270..3399683 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047248.1 CDS SeHA_C3506 NC_011083.1 3399700 3400266 D phage protein 3399700..3400266 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047249.1 CDS SeHA_C3507 NC_011083.1 3400270 3401307 D identified by match to protein family HMM PF00589; phage integrase family protein 3400270..3401307 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047250.1 CDS SeHA_C3508 NC_011083.1 3401518 3402285 R identified by match to protein family HMM PF04954; match to protein family HMM PF08021; siderophore-interacting protein complement(3401518..3402285) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047251.1 CDS SeHA_C3509 NC_011083.1 3402520 3403164 D identified by match to protein family HMM PF03551; PadR family transcriptional regulator 3402520..3403164 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047252.1 CDS SeHA_C3510 NC_011083.1 3403161 3404726 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein II complement(3403161..3404726) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047253.1 CDS SeHA_C3511 NC_011083.1 3405114 3406634 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08447; match to protein family HMM TIGR00229; aerotaxis receptor complement(3405114..3406634) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047254.1 CDS SeHA_C3512 NC_011083.1 3406646 3406801 D hypothetical protein 3406646..3406801 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047255.1 CDS ygjG NC_011083.1 3407064 3408443 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3407064..3408443 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047256.1 CDS SeHA_C3514 NC_011083.1 3408613 3410631 D identified by match to protein family HMM PF00724; match to protein family HMM PF07992; FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase family protein 3408613..3410631 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047257.1 CDS SeHA_C3515 NC_011083.1 3410712 3411848 R identified by match to protein family HMM PF05175; match to protein family HMM PF08242; methyltransferase family protein complement(3410712..3411848) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047258.1 CDS SeHA_C3516 NC_011083.1 3411934 3412431 D identified by match to protein family HMM PF01863; hypothetical protein 3411934..3412431 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047259.1 CDS SeHA_C3517 NC_011083.1 3412583 3413275 D identified by match to protein family HMM PF02698; hypothetical protein 3412583..3413275 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047260.1 CDS SeHA_C3518 NC_011083.1 3413364 3414362 D identified by match to protein family HMM PF01408; oxidoreductase YgjR 3413364..3414362 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047261.1 CDS SeHA_C3519 NC_011083.1 3414635 3415603 D identified by match to protein family HMM PF03741; hypothetical protein 3414635..3415603 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047262.1 CDS SeHA_C3520 NC_011083.1 3415858 3417102 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3415858..3417102 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047263.1 CDS SeHA_C3521 NC_011083.1 3417552 3418214 D identified by match to protein family HMM PF09335; hypothetical protein 3417552..3418214 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047264.1 CDS SeHA_C3522 NC_011083.1 3418218 3418601 D hypothetical protein 3418218..3418601 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047265.1 CDS SeHA_C3523 NC_011083.1 3418746 3419114 D identified by match to protein family HMM PF06476; hypothetical protein 3418746..3419114 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047266.1 CDS SeHA_C3524 NC_011083.1 3419156 3419461 D identified by match to protein family HMM PF05957; hypothetical protein 3419156..3419461 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047267.1 CDS SeHA_C3525 NC_011083.1 3419464 3419862 D hypothetical protein 3419464..3419862 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047268.1 CDS SeHA_C3526 NC_011083.1 3419859 3420158 D hypothetical protein 3419859..3420158 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047269.1 CDS SeHA_C3527 NC_011083.1 3420303 3420788 D identified by match to protein family HMM PF07681; hypothetical protein 3420303..3420788 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047270.1 CDS SeHA_C3528 NC_011083.1 3420856 3421842 D glutathione S-transferase 3420856..3421842 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047271.1 CDS SeHA_C3529 NC_011083.1 3421966 3422331 D identified by match to protein family HMM PF05656; hypothetical protein 3421966..3422331 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047272.1 CDS SeHA_C3530 NC_011083.1 3422370 3423266 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(3422370..3423266) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047273.1 CDS SeHA_C3531 NC_011083.1 3423371 3424072 D identified by match to protein family HMM PF02678; pirin family protein 3423371..3424072 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047274.1 CDS SeHA_C3532 NC_011083.1 3424096 3424260 D hypothetical protein 3424096..3424260 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047275.1 CDS SeHA_C3533 NC_011083.1 3424373 3425683 R identified by match to protein family HMM PF06354; hypothetical protein complement(3424373..3425683) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047276.1 CDS SeHA_C3534 NC_011083.1 3425709 3427148 R identified by match to protein family HMM TIGR00814; inner membrane transport protein YhaO complement(3425709..3427148) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047277.1 CDS SeHA_C3535 NC_011083.1 3427356 3428720 R identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase complement(3427356..3428720) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047278.1 CDS pflB NC_011083.1 3428790 3431084 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase complement(3428790..3431084) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047279.1 CDS ackA NC_011083.1 3431118 3432326 R catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase complement(3431118..3432326) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047280.1 CDS tdcC NC_011083.1 3432393 3433724 R involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC complement(3432393..3433724) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047281.1 CDS tdcB NC_011083.1 3433745 3434734 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase complement(3433745..3434734) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047282.1 CDS SeHA_C3540 NC_011083.1 3434832 3435770 R regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA complement(3434832..3435770) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083705.1 CDS SeHA_C3545 NC_011083.1 3437237 3438382 R glycerate kinase complement(3437237..3438382) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047283.1 CDS garR NC_011083.1 3438480 3439370 R catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase complement(3438480..3439370) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047284.1 CDS garL NC_011083.1 3439396 3440166 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3439396..3440166) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047285.1 CDS SeHA_C3548 NC_011083.1 3440282 3440422 R identified by glimmer; putative; hypothetical protein complement(3440282..3440422) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047286.1 CDS SeHA_C3549 NC_011083.1 3440422 3440550 D identified by glimmer; putative; hypothetical protein 3440422..3440550 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047287.1 CDS garD NC_011083.1 3440696 3442267 D identified by match to protein family HMM PF04295; match to protein family HMM PF08666; match to protein family HMM TIGR03248; galactarate dehydratase 3440696..3442267 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047288.1 CDS gatY NC_011083.1 3442387 3443379 D 'catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway'; tagatose-bisphosphate aldolase 3442387..3443379 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047289.1 CDS SeHA_C3552 NC_011083.1 3443499 3444770 D identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810; D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 3443499..3444770 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047290.1 CDS SeHA_C3553 NC_011083.1 3444785 3445249 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 3444785..3445249 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047291.1 CDS SeHA_C3554 NC_011083.1 3445280 3445564 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 3445280..3445564 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047292.1 CDS SeHA_C3555 NC_011083.1 3445568 3446941 D identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system galactitol-specific transporter subunit IIC 3445568..3446941 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047293.1 CDS SeHA_C3556 NC_011083.1 3446985 3448028 D Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3446985..3448028 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047294.1 CDS SeHA_C3557 NC_011083.1 3448139 3448912 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; galactitol utilization operon repressor 3448139..3448912 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047295.1 CDS SeHA_C3558 NC_011083.1 3449070 3449933 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein complement(3449070..3449933) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047296.1 CDS SeHA_C3559 NC_011083.1 3449997 3452039 D identified by match to protein family HMM PF04348; LppC superfamily 3449997..3452039 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047297.1 CDS SeHA_C3560 NC_011083.1 3451997 3452392 D identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 3451997..3452392 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047298.1 CDS diaA NC_011083.1 3452414 3453004 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3452414..3453004 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047299.1 CDS SeHA_C3562 NC_011083.1 3453014 3453589 D identified by match to protein family HMM PF04972; hypothetical protein 3453014..3453589 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047300.1 CDS SeHA_C3563 NC_011083.1 3453656 3454291 R identified by match to protein family HMM PF01370; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein complement(3453656..3454291) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047301.1 CDS SeHA_C3564 NC_011083.1 3454422 3454940 D identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; PfpI family intracellular peptidase 3454422..3454940 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047302.1 CDS SeHA_C3566 NC_011083.1 3454920 3455363 R hypothetical protein complement(3454920..3455363) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047303.1 CDS SeHA_C3565 NC_011083.1 3455356 3455718 D identified by match to protein family HMM PF01541; GIY-YIG nuclease superfamily protein 3455356..3455718 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047304.1 CDS SeHA_C3567 NC_011083.1 3455705 3456208 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(3455705..3456208) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047305.1 CDS SeHA_C3568 NC_011083.1 3456202 3456726 R identified by match to protein family HMM PF02036; sterol-binding protein complement(3456202..3456726) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047306.1 CDS SeHA_C3569 NC_011083.1 3456943 3457938 D identified by match to protein family HMM PF01136; peptidase, U32 family 3456943..3457938 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047307.1 CDS SeHA_C3570 NC_011083.1 3457947 3458825 D identified by match to protein family HMM PF01136; peptidase, U32 family 3457947..3458825 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047308.1 CDS SeHA_C3571 NC_011083.1 3459003 3460010 D identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558; hypothetical protein 3459003..3460010 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047309.1 CDS mtr NC_011083.1 3460101 3461345 R tryptophan transporter of high affinity; tryptophan permease complement(3460101..3461345) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047310.1 CDS deaD NC_011083.1 3461499 3463388 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD complement(3461499..3463388) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047311.1 CDS nlpI NC_011083.1 3463567 3464451 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3463567..3464451) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083706.1 CDS pnp NC_011083.1 3464561 3466726 R polyribonucleotide nucleotidyltransferase complement(3464561..3466726) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047312.1 CDS rpsO NC_011083.1 3466938 3467207 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3466938..3467207) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047313.1 CDS truB NC_011083.1 3467358 3468302 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3467358..3468302) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047314.1 CDS rbfA NC_011083.1 3468302 3468703 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3468302..3468703) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047315.1 CDS infB NC_011083.1 3468924 3471602 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3468924..3471602) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047316.1 CDS nusA NC_011083.1 3471627 3473129 R 'modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination'; transcription elongation factor NusA complement(3471627..3473129) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047317.2 CDS SeHA_C3583 NC_011083.1 3473157 3473609 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3473157..3473609) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047318.1 CDS argG NC_011083.1 3474237 3475580 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3474237..3475580 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047319.1 CDS SeHA_C3586 NC_011083.1 3475666 3476730 R hypothetical protein complement(3475666..3476730) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047320.1 CDS secG NC_011083.1 3477166 3477498 R identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG complement(3477166..3477498) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047321.1 CDS glmM NC_011083.1 3477721 3479058 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3477721..3479058) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047322.1 CDS folP NC_011083.1 3479051 3479899 R 'catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate'; dihydropteroate synthase complement(3479051..3479899) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047323.1 CDS SeHA_C3590 NC_011083.1 3479852 3479980 D identified by glimmer; putative; hypothetical protein 3479852..3479980 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047324.1 CDS hflB NC_011083.1 3480004 3481947 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease complement(3480004..3481947) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047325.1 CDS rrmJ NC_011083.1 3482042 3482668 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J complement(3482042..3482668) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047326.1 CDS SeHA_C3594 NC_011083.1 3482756 3483088 D RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3482756..3483088 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047327.1 CDS greA NC_011083.1 3483244 3483720 R 'necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus'; transcription elongation factor GreA complement(3483244..3483720) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047328.1 CDS dacB NC_011083.1 3483968 3485401 D 'penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 3483968..3485401 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047329.1 CDS SeHA_C3597 NC_011083.1 3485410 3485535 D identified by glimmer; putative; hypothetical protein 3485410..3485535 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047330.1 CDS obgE NC_011083.1 3485532 3486704 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3485532..3486704) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047331.1 CDS SeHA_C3599 NC_011083.1 3486720 3487685 R identified by match to protein family HMM PF00892; transporter complement(3486720..3487685) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047332.1 CDS rpmA NC_011083.1 3487815 3488072 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3487815..3488072) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047333.1 CDS rplU NC_011083.1 3488092 3488403 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(3488092..3488403) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047334.2 CDS ispB NC_011083.1 3488661 3489632 D identified by match to protein family HMM PF00348; octaprenyl diphosphate synthase 3488661..3489632 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047335.1 CDS SeHA_C3603 NC_011083.1 3489864 3490151 D activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3489864..3490151 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047336.1 CDS murA NC_011083.1 3490210 3491469 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3490210..3491469) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047337.1 CDS SeHA_C3605 NC_011083.1 3491523 3491777 R identified by match to protein family HMM PF01722; hypothetical protein complement(3491523..3491777) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047338.1 CDS SeHA_C3606 NC_011083.1 3491965 3492261 R anti-sigma factor antagonist complement(3491965..3492261) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047339.1 CDS ttg2D NC_011083.1 3492261 3492896 R identified by match to protein family HMM PF05494; toluene tolerance protein Ttg2D complement(3492261..3492896) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047340.1 CDS SeHA_C3608 NC_011083.1 3492915 3493466 R identified by match to protein family HMM PF02470; Mce family protein complement(3492915..3493466) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047341.1 CDS SeHA_C3609 NC_011083.1 3493471 3494253 R identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; toluene ABC transporter permease complement(3493471..3494253) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047342.1 CDS SeHA_C3610 NC_011083.1 3494261 3495073 R ATP-binding subunit of a putative ABC toluene efflux transporter; ABC transporter ATP-binding protein YrbF complement(3494261..3495073) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047343.1 CDS SeHA_C3611 NC_011083.1 3495286 3496263 D YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 3495286..3496263 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047344.1 CDS kdsD NC_011083.1 3496277 3497263 D identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; D-arabinose 5-phosphate isomerase 3496277..3497263 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047345.1 CDS kdsC NC_011083.1 3497284 3497850 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3497284..3497850 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047346.1 CDS SeHA_C3614 NC_011083.1 3497847 3498422 D identified by match to protein family HMM PF06835; hypothetical protein 3497847..3498422 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047347.1 CDS lptA NC_011083.1 3498391 3498945 D 'LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system'; lipopolysaccharide transport periplasmic protein LptA 3498391..3498945 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047348.1 CDS lptB NC_011083.1 3498952 3499677 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein YhbG 3498952..3499677 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047349.1 CDS rpoN NC_011083.1 3499725 3501158 D 'sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen'; RNA polymerase factor sigma-54 3499725..3501158 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047350.1 CDS yfiA NC_011083.1 3501181 3501468 D YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; sigma(54) modulation protein 3501181..3501468 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047351.1 CDS ptsN NC_011083.1 3501586 3502077 D identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3501586..3502077 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047352.1 CDS SeHA_C3620 NC_011083.1 3502123 3502977 D identified by match to protein family HMM PF03668; hypothetical protein 3502123..3502977 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047353.1 CDS ptsO NC_011083.1 3502974 3503246 D identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase Npr 3502974..3503246 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047354.1 CDS SeHA_C3622 NC_011083.1 3503495 3504127 D hypothetical protein 3503495..3504127 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047355.1 CDS mtgA NC_011083.1 3504202 3504930 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(3504202..3504930) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047356.1 CDS elbB NC_011083.1 3504927 3505580 R identified by match to protein family HMM PF01965; isoprenoid biosynthesis protein complement(3504927..3505580) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047357.1 CDS SeHA_C3626 NC_011083.1 3505807 3508143 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB complement(3505807..3508143) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047358.1 CDS SeHA_C3627 NC_011083.1 3508237 3509166 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; hypothetical protein complement(3508237..3509166) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083707.1 CDS gltB NC_011083.1 3509838 3514298 D glutamate synthase subunit alpha 3509838..3514298 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047359.1 CDS gltD NC_011083.1 3514308 3515726 D 'glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate'; glutamate synthase subunit beta 3514308..3515726 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047360.1 CDS SeHA_C3630 NC_011083.1 3515933 3517036 D identified by match to protein family HMM PF06250; hypothetical protein 3515933..3517036 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047361.1 CDS codB NC_011083.1 3517128 3518405 D identified by match to protein family HMM PF02133; cytosine permease 3517128..3518405 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047362.1 CDS SeHA_C3632 NC_011083.1 3518392 3519672 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3518392..3519672 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047363.1 CDS SeHA_C3633 NC_011083.1 3519755 3520222 R identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein complement(3519755..3520222) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047364.1 CDS SeHA_C3634 NC_011083.1 3520219 3521094 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase complement(3520219..3521094) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047365.1 CDS SeHA_C3635 NC_011083.1 3521091 3521780 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(3521091..3521780) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047366.1 CDS SeHA_C3636 NC_011083.1 3521827 3523317 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00891; sialic acid transporter complement(3521827..3523317) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047367.1 CDS nanA NC_011083.1 3523433 3524326 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(3523433..3524326) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047368.1 CDS SeHA_C3638 NC_011083.1 3524461 3525243 R Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR complement(3524461..3525243) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047369.1 CDS sspB NC_011083.1 3525361 3525861 R identified by match to protein family HMM PF04386; ClpXP protease specificity-enhancing factor complement(3525361..3525861) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047370.1 CDS sspA NC_011083.1 3525867 3526505 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3525867..3526505) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047371.1 CDS SeHA_C3641 NC_011083.1 3526662 3526820 R identified by glimmer; putative; hypothetical protein complement(3526662..3526820) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047372.1 CDS rpsI NC_011083.1 3526820 3527212 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3526820..3527212) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047373.1 CDS rplM NC_011083.1 3527228 3527656 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3527228..3527656) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047374.1 CDS SeHA_C3644 NC_011083.1 3527958 3529082 R identified by match to protein family HMM PF03969; ATPase complement(3527958..3529082) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047375.1 CDS SeHA_C3645 NC_011083.1 3529275 3529673 D identified by match to protein family HMM PF06295; cytochrome d ubiquinol oxidase subunit III 3529275..3529673 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047376.1 CDS SeHA_C3646 NC_011083.1 3529830 3531197 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine endoprotease 3529830..3531197 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047377.1 CDS degS NC_011083.1 3531290 3532360 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02038; serine endoprotease 3531290..3532360 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047378.2 CDS SeHA_C3648 NC_011083.1 3532394 3533125 R hypothetical protein complement(3532394..3533125) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047379.1 CDS SeHA_C3649 NC_011083.1 3533145 3534446 R identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta complement(3533145..3534446) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047380.1 CDS oadA NC_011083.1 3534459 3536243 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(3534459..3536243) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047381.1 CDS SeHA_C3651 NC_011083.1 3536260 3536502 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(3536260..3536502) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047382.1 CDS SeHA_C3652 NC_011083.1 3536659 3537276 R Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta complement(3536659..3537276) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047383.1 CDS SeHA_C3653 NC_011083.1 3537276 3538175 R Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha complement(3537276..3538175) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047384.1 CDS SeHA_C3654 NC_011083.1 3538208 3539476 R identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00785; anion transporter complement(3538208..3539476) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047385.1 CDS SeHA_C3655 NC_011083.1 3539687 3540352 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator complement(3539687..3540352) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047386.1 CDS SeHA_C3656 NC_011083.1 3540339 3540968 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(3540339..3540968) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047387.1 CDS mdh NC_011083.1 3541088 3542026 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(3541088..3542026) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047388.1 CDS argR NC_011083.1 3542440 3542910 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3542440..3542910 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047389.1 CDS ycfR NC_011083.1 3543275 3543538 D identified by match to protein family HMM PF07338; hypothetical protein 3543275..3543538 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047390.1 CDS SeHA_C3660 NC_011083.1 3543642 3543908 D identified by match to protein family HMM PF07338; hypothetical protein 3543642..3543908 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047391.1 CDS SeHA_C3661 NC_011083.1 3543968 3544240 R hypothetical protein complement(3543968..3544240) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047392.1 CDS aaeB NC_011083.1 3544412 3546379 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB complement(3544412..3546379) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047393.1 CDS aaeA NC_011083.1 3546385 3547317 R 'with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate'; p-hydroxybenzoic acid efflux subunit AaeA complement(3546385..3547317) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047394.1 CDS aaeX NC_011083.1 3547325 3547528 R membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein complement(3547325..3547528) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047395.1 CDS aaeR NC_011083.1 3547710 3548639 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 3547710..3548639 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047396.1 CDS tldD NC_011083.1 3548762 3550207 R 'responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA'; protease TldD complement(3548762..3550207) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047397.1 CDS SeHA_C3667 NC_011083.1 3550352 3554152 R identified by match to protein family HMM TIGR02099; hypothetical protein complement(3550352..3554152) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047398.1 CDS cafA NC_011083.1 3554259 3555728 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(3554259..3555728) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047399.1 CDS maf NC_011083.1 3555718 3556311 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(3555718..3556311) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047400.1 CDS lytS NC_011083.1 3556320 3556811 R part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD complement(3556320..3556811) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047401.1 CDS mreC NC_011083.1 3556811 3557863 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3556811..3557863) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047402.1 CDS mreB NC_011083.1 3557928 3558971 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3557928..3558971) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047403.1 CDS SeHA_C3673 NC_011083.1 3559279 3561219 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(3559279..3561219) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047404.1 CDS SeHA_C3674 NC_011083.1 3561423 3562397 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823; hypothetical protein 3561423..3562397 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047405.1 CDS SeHA_C3675 NC_011083.1 3562520 3563524 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 3562520..3563524 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047406.1 CDS SeHA_C3676 NC_011083.1 3563525 3564124 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 3563525..3564124 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047407.1 CDS accB NC_011083.1 3564517 3564987 D 'composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism'; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3564517..3564987 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047408.1 CDS accC NC_011083.1 3564998 3566347 D 'an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism'; acetyl-CoA carboxylase biotin carboxylase subunit 3564998..3566347 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047409.1 CDS SeHA_C3679 NC_011083.1 3566456 3566698 D identified by match to protein family HMM PF06196; hypothetical protein 3566456..3566698 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047410.1 CDS panF NC_011083.1 3566688 3568139 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3566688..3568139 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047411.1 CDS prmA NC_011083.1 3568151 3569032 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3568151..3569032 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047412.1 CDS dusB NC_011083.1 3569694 3570659 D identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; tRNA-dihydrouridine synthase B 3569694..3570659 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047413.1 CDS fis NC_011083.1 3570685 3570981 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3570685..3570981 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047414.1 CDS SeHA_C3684 NC_011083.1 3571067 3571951 D identified by match to protein family HMM PF01555; methyltransferase 3571067..3571951 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047415.1 CDS SeHA_C3685 NC_011083.1 3572034 3572198 D hypothetical protein 3572034..3572198 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047416.1 CDS SeHA_C3686 NC_011083.1 3572349 3574448 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254; ggdef domain/eal domain-containing protein 3572349..3574448 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047417.1 CDS SeHA_C3687 NC_011083.1 3574451 3575113 R identified by match to protein family HMM PF00440; match to protein family HMM PF08361; DNA-binding transcriptional regulator EnvR complement(3574451..3575113) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047418.1 CDS SeHA_C3688 NC_011083.1 3575186 3575344 D hypothetical protein 3575186..3575344 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047419.1 CDS SeHA_C3689 NC_011083.1 3575525 3576682 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein E 3575525..3576682 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047420.1 CDS SeHA_C3690 NC_011083.1 3576694 3579807 D identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; AcrB protein 3576694..3579807 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047421.1 CDS SeHA_C3692 NC_011083.1 3579904 3580068 R hypothetical protein complement(3579904..3580068) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047422.1 CDS SeHA_C3691 NC_011083.1 3580044 3580265 D hypothetical protein 3580044..3580265 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047423.1 CDS SeHA_C3693 NC_011083.1 3580719 3580838 R identified by glimmer; putative; hypothetical protein complement(3580719..3580838) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083708.1 CDS SeHA_C3703 NC_011083.1 3586777 3587331 D hypothetical protein 3586777..3587331 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047425.1 CDS SeHA_C3704 NC_011083.1 3587307 3587564 R identified by match to protein family HMM PF07369; hypothetical protein complement(3587307..3587564) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047426.1 CDS aroE NC_011083.1 3587561 3588379 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(3587561..3588379) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047427.1 CDS SeHA_C3706 NC_011083.1 3588384 3588956 R RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; ribosome maturation factor complement(3588384..3588956) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047428.1 CDS SeHA_C3707 NC_011083.1 3588961 3589503 R identified by match to protein family HMM PF01396; topoisomerase DNA-binding C4 zinc finger domain-containing protein complement(3588961..3589503) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047429.1 CDS smg NC_011083.1 3589530 3590003 R identified by match to protein family HMM PF04361; hypothetical protein complement(3589530..3590003) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047430.1 CDS SeHA_C3709 NC_011083.1 3589975 3591099 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA complement(3589975..3591099) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047431.1 CDS def NC_011083.1 3591231 3591740 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3591231..3591740 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047432.1 CDS fmt NC_011083.1 3591756 3592703 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3591756..3592703 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047433.1 CDS sun NC_011083.1 3592755 3594044 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase B 3592755..3594044 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047434.1 CDS trkA NC_011083.1 3594066 3595442 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3594066..3595442 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047435.1 CDS mscL NC_011083.1 3595584 3595997 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large conductance mechanosensitive channel protein 3595584..3595997 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047436.1 CDS zntR NC_011083.1 3596260 3596685 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator complement(3596260..3596685) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047437.1 CDS SeHA_C3716 NC_011083.1 3596696 3597064 R identified by match to protein family HMM PF09350; hypothetical protein complement(3596696..3597064) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047438.1 CDS rplQ NC_011083.1 3597172 3597555 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3597172..3597555) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047439.1 CDS rpoA NC_011083.1 3597596 3598585 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3597596..3598585) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047440.1 CDS rpsD NC_011083.1 3598611 3599231 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(3598611..3599231) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047441.1 CDS rpsK NC_011083.1 3599265 3599654 R 'located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3'; 30S ribosomal protein S11 complement(3599265..3599654) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047442.1 CDS rpsM NC_011083.1 3599671 3600027 R 'located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA'; 30S ribosomal protein S13 complement(3599671..3600027) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047443.1 CDS secY NC_011083.1 3600322 3601653 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3600322..3601653) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047444.1 CDS rplO NC_011083.1 3601661 3602095 R late assembly protein; 50S ribosomal protein L15 complement(3601661..3602095) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047445.1 CDS rpmD NC_011083.1 3602099 3602278 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3602099..3602278) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047446.1 CDS rpsE NC_011083.1 3602282 3602785 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3602282..3602785) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047447.1 CDS rplR NC_011083.1 3602800 3603153 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3602800..3603153) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047448.1 CDS rplF NC_011083.1 3603163 3603696 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(3603163..3603696) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047449.1 CDS rpsH NC_011083.1 3603709 3604101 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3603709..3604101) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047450.1 CDS rpsN NC_011083.1 3604135 3604440 R 'located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif'; 30S ribosomal protein S14 complement(3604135..3604440) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047451.1 CDS rplE NC_011083.1 3604455 3604994 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3604455..3604994) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047452.1 CDS rplX NC_011083.1 3605009 3605323 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3605009..3605323) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047453.1 CDS rplN NC_011083.1 3605334 3605705 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3605334..3605705) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047454.1 CDS rpsQ NC_011083.1 3605869 3606123 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3605869..3606123) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047455.1 CDS rpmC NC_011083.1 3606123 3606314 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3606123..3606314) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047456.1 CDS rplP NC_011083.1 3606314 3606724 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3606314..3606724) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047457.1 CDS rpsC NC_011083.1 3606737 3607438 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3606737..3607438) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047458.1 CDS rplV NC_011083.1 3607456 3607788 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(3607456..3607788) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047459.1 CDS rpsS NC_011083.1 3607803 3608081 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3607803..3608081) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047460.1 CDS rplB NC_011083.1 3608098 3608919 R 'one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation'; 50S ribosomal protein L2 complement(3608098..3608919) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047461.1 CDS rplW NC_011083.1 3608937 3609239 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3608937..3609239) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047462.1 CDS rplD NC_011083.1 3609236 3609841 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3609236..3609841) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047463.1 CDS rplC NC_011083.1 3609852 3610481 R 'binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin'; 50S ribosomal protein L3 complement(3609852..3610481) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047464.1 CDS rpsJ NC_011083.1 3610514 3610825 R identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 complement(3610514..3610825) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047465.2 CDS SeHA_C3746 NC_011083.1 3611088 3611672 D identified by match to protein family HMM PF01478; type III leader peptidase 3611088..3611672 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047466.1 CDS bfr NC_011083.1 3611669 3612145 R iron storage protein; bacterioferritin complement(3611669..3612145) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047467.1 CDS bfd NC_011083.1 3612218 3612412 R identified by match to protein family HMM PF04324; bacterioferritin-associated ferredoxin complement(3612218..3612412) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047468.1 CDS tuf2 NC_011083.1 3612597 3613781 R 'EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu'; elongation factor Tu complement(3612597..3613781) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047469.1 CDS fusA NC_011083.1 3613853 3615967 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3613853..3615967) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047470.1 CDS rpsG NC_011083.1 3616064 3616534 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3616064..3616534) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047471.1 CDS rpsL NC_011083.1 3616630 3617004 R 'interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance'; 30S ribosomal protein S12 complement(3616630..3617004) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047472.1 CDS dsrH NC_011083.1 3617130 3617417 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB complement(3617130..3617417) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047473.1 CDS tusC NC_011083.1 3617425 3617781 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC complement(3617425..3617781) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047474.1 CDS tusD NC_011083.1 3617781 3618167 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(3617781..3618167) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047475.1 CDS SeHA_C3757 NC_011083.1 3618167 3618889 R identified by match to protein family HMM PF08348; hypothetical protein complement(3618167..3618889) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047476.1 CDS SeHA_C3758 NC_011083.1 3619165 3619983 R rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3619165..3619983) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047477.1 CDS SeHA_C3759 NC_011083.1 3620203 3620421 D identified by match to protein family HMM PF04102; hypothetical protein 3620203..3620421 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047478.1 CDS slyD NC_011083.1 3620609 3621199 R rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3620609..3621199) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047479.1 CDS SeHA_C3761 NC_011083.1 3621294 3621494 R identified by match to protein family HMM PF09526; match to protein family HMM TIGR02443; hypothetical protein complement(3621294..3621494) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047480.1 CDS kefB NC_011083.1 3621504 3623309 R involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB complement(3621504..3623309) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047481.1 CDS kefG NC_011083.1 3623309 3623860 R required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG complement(3623309..3623860) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047482.1 CDS SeHA_C3764 NC_011083.1 3624126 3626033 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3624126..3626033 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047483.1 CDS SeHA_C3765 NC_011083.1 3626196 3626417 D ABC transporter ATPase 3626196..3626417 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047484.1 CDS SeHA_C3766 NC_011083.1 3626419 3626730 R identified by match to protein family HMM PF08803; hypothetical protein complement(3626419..3626730) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047485.1 CDS SeHA_C3767 NC_011083.1 3626973 3627995 D identified by match to protein family HMM PF00561; hydrolase 3626973..3627995 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047486.1 CDS SeHA_C3768 NC_011083.1 3627992 3628210 D identified by match to protein family HMM PF06794; hypothetical protein 3627992..3628210 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047487.1 CDS SeHA_C3769 NC_011083.1 3628262 3629131 D identified by match to protein family HMM PF00485; phosphoribulokinase/uridine kinase family protein 3628262..3629131 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047488.1 CDS SeHA_C3770 NC_011083.1 3629227 3629631 R identified by match to protein family HMM PF02566; hypothetical protein complement(3629227..3629631) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047489.1 CDS crp NC_011083.1 3629939 3630571 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3629939..3630571 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047490.1 CDS SeHA_C3772 NC_011083.1 3630620 3632707 D identified by match to protein family HMM PF05976; match to protein family HMM TIGR01667; hypothetical protein 3630620..3632707 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047491.1 CDS argD NC_011083.1 3632750 3633967 R 'DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate'; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase complement(3632750..3633967) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047492.1 CDS pabA NC_011083.1 3634053 3634616 R aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II complement(3634053..3634616) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047493.1 CDS fic NC_011083.1 3634648 3635250 R identified by match to protein family HMM PF02661; cell filamentation protein Fic complement(3634648..3635250) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047494.1 CDS SeHA_C3776 NC_011083.1 3635240 3635407 R hypothetical protein complement(3635240..3635407) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047495.1 CDS ppiA NC_011083.1 3635516 3636088 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase A complement(3635516..3636088) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047496.1 CDS tsgA NC_011083.1 3636365 3637546 D identified by match to protein family HMM PF07690; hypothetical protein 3636365..3637546 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047497.1 CDS SeHA_C3780 NC_011083.1 3637680 3637856 R hypothetical protein complement(3637680..3637856) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047498.1 CDS nirB NC_011083.1 3637809 3640352 D identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H] large subunit 3637809..3640352 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047499.1 CDS nirD NC_011083.1 3640349 3640675 D 'involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations'; nitrite reductase small subunit 3640349..3640675 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047500.1 CDS SeHA_C3782 NC_011083.1 3640676 3640831 R hypothetical protein complement(3640676..3640831) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047501.1 CDS SeHA_C3783 NC_011083.1 3640941 3641750 D member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3640941..3641750 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047502.1 CDS cysG NC_011083.1 3641762 3643135 D 'multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin'; siroheme synthase 3641762..3643135 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047503.1 CDS SeHA_C3785 NC_011083.1 3643473 3649298 D identified by match to protein family HMM PF03797; porin autotransporter 3643473..3649298 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047504.1 CDS SeHA_C3786 NC_011083.1 3649491 3649661 D hypothetical protein 3649491..3649661 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047505.1 CDS trpS NC_011083.1 3649806 3650810 R 'catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; tryptophanyl-tRNA synthetase complement(3649806..3650810) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047506.1 CDS gph NC_011083.1 3650803 3651561 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(3650803..3651561) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047507.1 CDS rpe NC_011083.1 3651554 3652231 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(3651554..3652231) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047508.1 CDS dam NC_011083.1 3652249 3653085 R identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; DNA adenine methylase complement(3652249..3653085) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047509.1 CDS SeHA_C3791 NC_011083.1 3653266 3654543 R identified by match to protein family HMM PF05036; hypothetical protein complement(3653266..3654543) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047510.1 CDS aroB NC_011083.1 3654641 3655729 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(3654641..3655729) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047511.1 CDS aroK NC_011083.1 3655786 3656307 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(3655786..3656307) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047512.1 CDS hofQ NC_011083.1 3656772 3658052 R outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; outer membrane porin HofQ complement(3656772..3658052) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047513.1 CDS SeHA_C3795 NC_011083.1 3657925 3658305 R hypothetical protein complement(3657925..3658305) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047514.1 CDS SeHA_C3796 NC_011083.1 3658316 3658789 R hypothetical protein complement(3658316..3658789) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047515.1 CDS SeHA_C3797 NC_011083.1 3658773 3659312 R identified by match to protein family HMM PF05137; PilN family protein complement(3658773..3659312) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083709.1 CDS SeHA_C3798 NC_011083.1 3659312 3660091 R DNA utilization protein HofM complement(3659312..3660091) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047516.1 CDS mrcA NC_011083.1 3660212 3662764 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3660212..3662764 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047517.1 CDS nudE NC_011083.1 3662860 3663456 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(3662860..3663456) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047518.1 CDS SeHA_C3801 NC_011083.1 3663746 3665878 D identified by match to protein family HMM PF07095; intracellular growth attenuator protein IgaA 3663746..3665878 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047519.1 CDS SeHA_C3802 NC_011083.1 3665943 3666611 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD hydrolase, IA family 3665943..3666611 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047520.1 CDS hslR NC_011083.1 3666622 3667023 D identified by match to protein family HMM PF01479; ribosome-associated heat shock protein Hsp15 3666622..3667023 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047521.1 CDS hslO NC_011083.1 3667042 3667926 D 'becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers'; Hsp33-like chaperonin 3667042..3667926 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047522.1 CDS SeHA_C3805 NC_011083.1 3668035 3669744 R inner membrane protein complement(3668035..3669744) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047523.1 CDS SeHA_C3806 NC_011083.1 3669936 3670070 R identified by glimmer; putative; hypothetical protein complement(3669936..3670070) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047524.1 CDS pckA NC_011083.1 3670124 3671743 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3670124..3671743 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047525.1 CDS envZ NC_011083.1 3671818 3673161 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(3671818..3673161) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047526.1 CDS ompR NC_011083.1 3673167 3673886 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(3673167..3673886) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047527.1 CDS greB NC_011083.1 3674112 3674585 D 'necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus'; transcription elongation factor GreB 3674112..3674585 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047528.1 CDS SeHA_C3811 NC_011083.1 3674684 3677014 D identified by match to protein family HMM PF00575; match to protein family HMM PF09371; transcriptional accessory protein 3674684..3677014 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047529.1 CDS feoA NC_011083.1 3677451 3677678 D identified by match to protein family HMM PF04023; ferrous iron transport protein A 3677451..3677678 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047530.1 CDS feoB NC_011083.1 3677697 3680015 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3677697..3680015 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047531.1 CDS SeHA_C3814 NC_011083.1 3680028 3680264 D identified by match to protein family HMM PF09012; hypothetical protein 3680028..3680264 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047533.1 CDS SeHA_C3816 NC_011083.1 3680499 3681413 D identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 3680499..3681413 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047534.1 CDS SeHA_C3817 NC_011083.1 3681449 3682219 R Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH complement(3681449..3682219) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047535.1 CDS gntX NC_011083.1 3682257 3682940 D involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3682257..3682940 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047536.1 CDS gntY NC_011083.1 3682999 3683574 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 3682999..3683574 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047537.1 CDS gntT NC_011083.1 3683951 3685267 D identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; high-affinity gluconate transporter 3683951..3685267 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047538.1 CDS malQ NC_011083.1 3685386 3687464 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(3685386..3687464) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047539.1 CDS SeHA_C3822 NC_011083.1 3687474 3689867 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; maltodextrin phosphorylase complement(3687474..3689867) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047540.1 CDS malT NC_011083.1 3690461 3693166 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3690461..3693166 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047541.1 CDS SeHA_C3824 NC_011083.1 3693254 3693529 R identified by match to protein family HMM PF05016; match to protein family HMM TIGR00053; match to protein family HMM TIGR02385; hypothetical protein complement(3693254..3693529) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047542.1 CDS SeHA_C3825 NC_011083.1 3693532 3693792 R identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384; DNA-damage-inducible protein J complement(3693532..3693792) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047543.1 CDS rtcA NC_011083.1 3693901 3694962 R 'catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester'; RNA 3'-terminal-phosphate cyclase complement(3693901..3694962) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047544.1 CDS rtcB NC_011083.1 3694966 3696183 R identified by match to protein family HMM PF01139; hypothetical protein complement(3694966..3696183) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047545.1 CDS SeHA_C3828 NC_011083.1 3696528 3698081 R identified by match to protein family HMM PF05731; 60-kDa SS-A/Ro ribonucleoprotein complement(3696528..3698081) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047546.1 CDS SeHA_C3829 NC_011083.1 3698074 3698196 R hypothetical protein complement(3698074..3698196) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083710.1 CDS SeHA_C3830 NC_011083.1 3698271 3699854 D transcriptional regulatory protein RtcR 3698271..3699854 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047547.1 CDS SeHA_C3831 NC_011083.1 3699851 3700609 R 'represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism'; DNA-binding transcriptional repressor GlpR complement(3699851..3700609) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047548.1 CDS SeHA_C3832 NC_011083.1 3700703 3701533 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG complement(3700703..3701533) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047549.1 CDS glpE NC_011083.1 3701609 3701935 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase complement(3701609..3701935) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047550.1 CDS glpD NC_011083.1 3702134 3703642 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3702134..3703642 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047551.1 CDS SeHA_C3835 NC_011083.1 3703689 3704234 R hypothetical protein complement(3703689..3704234) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047553.1 CDS gldA NC_011083.1 3705896 3707005 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(3705896..3707005) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047554.1 CDS SeHA_C3839 NC_011083.1 3707346 3708677 D identified by match to protein family HMM PF07690; major facilitator superfamily transporter 3707346..3708677 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047555.1 CDS SeHA_C3840 NC_011083.1 3708674 3710389 D identified by match to protein family HMM PF00920; dihydroxy-acid dehydratase 3708674..3710389 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047556.1 CDS SeHA_C3841 NC_011083.1 3710433 3711338 D identified by match to protein family HMM PF00701; dihydrodipicolinate synthetase 3710433..3711338 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047557.1 CDS SeHA_C3842 NC_011083.1 3711382 3712137 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator complement(3711382..3712137) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047558.1 CDS SeHA_C3843 NC_011083.1 3712315 3714762 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase complement(3712315..3714762) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047559.1 CDS glgA NC_011083.1 3714782 3716215 R 'catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose'; glycogen synthase complement(3714782..3716215) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047560.1 CDS glgC NC_011083.1 3716215 3717510 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3716215..3717510) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047561.1 CDS glgX NC_011083.1 3717525 3719501 R 'catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen'; glycogen debranching protein complement(3717525..3719501) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047562.1 CDS glgB NC_011083.1 3719498 3721684 R 'catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain'; glycogen branching protein complement(3719498..3721684) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047563.1 CDS asd NC_011083.1 3722031 3723137 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(3722031..3723137) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047564.1 CDS gntU NC_011083.1 3723561 3724901 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; low affinity gluconate transporter complement(3723561..3724901) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047565.1 CDS gntK NC_011083.1 3724898 3725392 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase complement(3724898..3725392) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047566.2 CDS gntR NC_011083.1 3725570 3726565 R identified by match to protein family HMM PF00532; transcriptional regulator GntR complement(3725570..3726565) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047567.1 CDS SeHA_C3853 NC_011083.1 3726695 3727390 R identified by match to protein family HMM PF02678; match to protein family HMM PF07883; hypothetical protein complement(3726695..3727390) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047568.1 CDS SeHA_C3854 NC_011083.1 3727514 3728551 R identified by match to protein family HMM PF01408; match to protein family HMM PF02894; dehydrogenase complement(3727514..3728551) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047569.1 CDS SeHA_C3856 NC_011083.1 3728895 3729023 D identified by glimmer; putative; hypothetical protein 3728895..3729023 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047570.1 CDS SeHA_C3857 NC_011083.1 3729020 3729508 D YhhY; regulated by the fur regulator; unknown function; acetyltransferase YhhY 3729020..3729508 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047571.1 CDS SeHA_C3858 NC_011083.1 3729589 3729705 R identified by glimmer; putative; hypothetical protein complement(3729589..3729705) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047572.1 CDS SeHA_C3859 NC_011083.1 3729773 3730987 D identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; ribokinase 3729773..3730987 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047573.1 CDS SeHA_C3860 NC_011083.1 3731003 3731764 D identified by match to protein family HMM PF07090; hypothetical protein 3731003..3731764 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047574.1 CDS SeHA_C3861 NC_011083.1 3731818 3732786 D hypothetical protein 3731818..3732786 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047575.1 CDS SeHA_C3862 NC_011083.1 3732786 3733820 D identified by match to protein family HMM PF02126; phophotriesterase 3732786..3733820 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047576.1 CDS ggt NC_011083.1 3733865 3735607 R periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase complement(3733865..3735607) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047577.1 CDS SeHA_C3864 NC_011083.1 3735733 3736149 D hypothetical protein 3735733..3736149 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047578.1 CDS ugpQ NC_011083.1 3736162 3736902 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase complement(3736162..3736902) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047579.1 CDS ugpC NC_011083.1 3736899 3737969 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(3736899..3737969) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047580.1 CDS SeHA_C3867 NC_011083.1 3737971 3738816 R with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein complement(3737971..3738816) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047581.1 CDS ugpA NC_011083.1 3738813 3739700 R with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease complement(3738813..3739700) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047582.1 CDS ugpB NC_011083.1 3739764 3741080 R with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein complement(3739764..3741080) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047583.1 CDS SeHA_C3870 NC_011083.1 3741223 3741351 D identified by glimmer; putative; hypothetical protein 3741223..3741351 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047584.1 CDS SeHA_C3871 NC_011083.1 3741313 3741567 R hypothetical protein complement(3741313..3741567) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047585.1 CDS livF NC_011083.1 3741755 3742468 R 'with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter ATP-binding subunit complement(3741755..3742468) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047586.1 CDS livG NC_011083.1 3742470 3743237 R 'Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter ATP-binding subunit complement(3742470..3743237) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047587.1 CDS livM NC_011083.1 3743234 3744511 R 'Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter permease subunit complement(3743234..3744511) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047588.1 CDS livH NC_011083.1 3744508 3745434 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease LivH complement(3744508..3745434) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047589.1 CDS livK NC_011083.1 3745494 3746603 R identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK complement(3745494..3746603) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047590.1 CDS SeHA_C3877 NC_011083.1 3747025 3747408 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 3747025..3747408 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047591.1 CDS SeHA_C3878 NC_011083.1 3747386 3747520 D hypothetical protein 3747386..3747520 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047592.1 CDS livJ NC_011083.1 3747604 3748707 R identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter periplasmic Leu/Ile/Val-binding protein LivJ complement(3747604..3748707) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047593.1 CDS rpoH NC_011083.1 3749029 3749883 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(3749029..3749883) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047594.1 CDS ftsX NC_011083.1 3750129 3751184 R 'putative ABC transporter, membrane protein'; cell division protein FtsX complement(3750129..3751184) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047595.1 CDS ftsE NC_011083.1 3751177 3751845 R 'putative ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions'; cell division protein FtsE complement(3751177..3751845) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047596.1 CDS SeHA_C3883 NC_011083.1 3751848 3753323 R signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY complement(3751848..3753323) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047597.1 CDS rsmD NC_011083.1 3753422 3754045 D catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3753422..3754045 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047598.1 CDS SeHA_C3885 NC_011083.1 3754035 3754304 D identified by match to protein family HMM PF06611; hypothetical protein 3754035..3754304 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047599.1 CDS SeHA_C3886 NC_011083.1 3754326 3754697 R hypothetical protein complement(3754326..3754697) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047600.1 CDS SeHA_C3887 NC_011083.1 3754839 3755465 D identified by match to protein family HMM PF07947; hypothetical protein 3754839..3755465 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047601.1 CDS zntA NC_011083.1 3755546 3757744 D 'P-type ATPase involved in the export of lead, cadmium, zinc and mercury'; zinc/cadmium/mercury/lead-transporting ATPase 3755546..3757744 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047602.1 CDS SeHA_C3889 NC_011083.1 3757944 3759587 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 3757944..3759587 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047603.1 CDS SeHA_C3890 NC_011083.1 3759611 3759946 R identified by match to protein family HMM PF01206; hypothetical protein complement(3759611..3759946) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047604.1 CDS SeHA_C3891 NC_011083.1 3760026 3760691 D identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 3760026..3760691 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047605.1 CDS SeHA_C3892 NC_011083.1 3760764 3761321 D hypothetical protein 3760764..3761321 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047606.1 CDS SeHA_C3893 NC_011083.1 3761325 3762542 R identified by match to protein family HMM PF07690; major facilitator superfamily transporter complement(3761325..3762542) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047607.1 CDS SeHA_C3894 NC_011083.1 3762674 3763723 D identified by match to protein family HMM PF01594; hypothetical protein 3762674..3763723 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047608.1 CDS SeHA_C3895 NC_011083.1 3763775 3764353 D identified by match to protein family HMM PF01648; holo-(acyl carrier protein) synthase 2 3763775..3764353 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047609.1 CDS nikR NC_011083.1 3764409 3764846 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3764409..3764846 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047610.1 CDS SeHA_C3897 NC_011083.1 3764948 3766072 R identified by match to protein family HMM PF01061; ABC transporter ATP-binding protein complement(3764948..3766072) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047611.1 CDS SeHA_C3898 NC_011083.1 3766072 3768813 R identified by match to protein family HMM PF00005; match to protein family HMM PF01061; ABC transporter permease/ATP-binding protein complement(3766072..3768813) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047612.1 CDS SeHA_C3899 NC_011083.1 3768810 3769877 R identified by match to protein family HMM PF00529; secretion protein HlyD family protein complement(3768810..3769877) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047613.1 CDS SeHA_C3900 NC_011083.1 3769969 3770100 D identified by glimmer; putative; hypothetical protein 3769969..3770100 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047614.1 CDS SeHA_C3901 NC_011083.1 3770183 3771379 R identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein complement(3770183..3771379) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047615.1 CDS SeHA_C3902 NC_011083.1 3771610 3773106 D identified by match to protein family HMM PF01384; low-affinity inorganic phosphate transporter 2 3771610..3773106 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047616.1 CDS SeHA_C3903 NC_011083.1 3773247 3773528 R 'ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress'; universal stress protein UspB complement(3773247..3773528) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047617.1 CDS uspA NC_011083.1 3773970 3774404 D identified by match to protein family HMM PF00582; universal stress protein A 3773970..3774404 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047618.1 CDS SeHA_C3905 NC_011083.1 3774729 3776201 D member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3774729..3776201 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047619.1 CDS SeHA_C3906 NC_011083.1 3776293 3777051 R predicted SAM-dependent methyltransferase; methyltransferase complement(3776293..3777051) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047620.1 CDS SeHA_C3907 NC_011083.1 3777058 3779100 R identified by match to protein family HMM PF01432; oligopeptidase A complement(3777058..3779100) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047621.1 CDS SeHA_C3908 NC_011083.1 3779282 3780553 R identified by match to protein family HMM PF01569; phosphatase complement(3779282..3780553) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047622.1 CDS yhiR NC_011083.1 3780764 3781606 D identified by match to protein family HMM PF04378; DNA utilization protein YhiR 3780764..3781606 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047623.1 CDS SeHA_C3910 NC_011083.1 3781567 3781698 R identified by glimmer; putative; hypothetical protein complement(3781567..3781698) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047624.1 CDS gor NC_011083.1 3781711 3783063 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3781711..3783063 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047625.1 CDS SeHA_C3912 NC_011083.1 3783110 3784153 R identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase complement(3783110..3784153) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047626.1 CDS SeHA_C3913 NC_011083.1 3784212 3785531 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(3784212..3785531) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047627.1 CDS SeHA_C3914 NC_011083.1 3785585 3786430 R identified by match to protein family HMM PF00294; PfkB domain-containing protein complement(3785585..3786430) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047628.1 CDS SeHA_C3915 NC_011083.1 3786494 3787468 R identified by match to protein family HMM PF01380; sugar isomerase complement(3786494..3787468) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047629.1 CDS SeHA_C3916 NC_011083.1 3787647 3788366 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(3787647..3788366) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047630.1 CDS treF NC_011083.1 3788692 3790341 D cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3788692..3790341 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047631.1 CDS SeHA_C3918 NC_011083.1 3790354 3791943 R hypothetical protein complement(3790354..3791943) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047632.1 CDS SeHA_C3919 NC_011083.1 3792021 3792134 R identified by glimmer; putative; hypothetical protein complement(3792021..3792134) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047633.1 CDS SeHA_C3920 NC_011083.1 3792224 3792580 D phage endolysin 3792224..3792580 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047634.1 CDS SeHA_C3921 NC_011083.1 3792586 3793188 R identified by match to protein family HMM PF00196; match to protein family HMM PF01726; match to protein family HMM PF08281; transcriptional regulator complement(3792586..3793188) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047635.1 CDS SeHA_C3922 NC_011083.1 3793572 3793727 D identified by glimmer; putative; hypothetical protein 3793572..3793727 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047636.1 CDS SeHA_C3923 NC_011083.1 3793815 3794717 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 3793815..3794717 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047637.1 CDS SeHA_C3924 NC_011083.1 3794790 3795818 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00766; ribonuclease 3794790..3795818 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047638.1 CDS SeHA_C3925 NC_011083.1 3796169 3797491 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; MFS transporter/metabolite:H+ symporter family protein 3796169..3797491 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047639.1 CDS SeHA_C3926 NC_011083.1 3797531 3799591 R identified by match to protein family HMM PF05170; AsmA family protein complement(3797531..3799591) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047640.1 CDS SeHA_C3927 NC_011083.1 3799701 3800468 R in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein complement(3799701..3800468) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083711.1 CDS SeHA_C3928 NC_011083.1 3800697 3801626 D 2-dehydro-3-deoxygluconokinase 3800697..3801626 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047641.1 CDS SeHA_C3929 NC_011083.1 3801680 3803167 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; hypothetical protein complement(3801680..3803167) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047642.1 CDS dctA NC_011083.1 3803387 3804673 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(3803387..3804673) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047643.1 CDS SeHA_C3931 NC_011083.1 3804831 3806837 R HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a putative phosphodiesterase protein from E. coli; phosphodiesterase complement(3804831..3806837) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047644.2 CDS SeHA_C3932 NC_011083.1 3807011 3810553 R 'cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA'; cellulose synthase subunit BcsC complement(3807011..3810553) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047645.1 CDS bcsZ NC_011083.1 3810535 3811644 R 'catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans'; endo-1,4-D-glucanase complement(3810535..3811644) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047646.1 CDS bcsB NC_011083.1 3811648 3813948 R 'binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)'; cellulose synthase regulator protein complement(3811648..3813948) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047647.1 CDS bcsA NC_011083.1 3813959 3816583 R 'polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis'; cellulose synthase catalytic subunit complement(3813959..3816583) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047648.1 CDS yhjQ NC_011083.1 3816580 3817332 R identified by match to protein family HMM PF06564; match to protein family HMM TIGR03371; cell division protein complement(3816580..3817332) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047649.1 CDS SeHA_C3937 NC_011083.1 3817333 3817536 R hypothetical protein complement(3817333..3817536) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047651.1 CDS SeHA_C3939 NC_011083.1 3817793 3819352 D identified by match to protein family HMM TIGR03369; cellulose biosynthesis protein BcsE 3817793..3819352 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047652.1 CDS bcsF NC_011083.1 3819349 3819540 D identified by match to protein family HMM TIGR03493; celllulose biosynthesis operon protein BcsF/YhjT 3819349..3819540 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047653.1 CDS yhjU NC_011083.1 3819537 3821216 D identified by match to protein family HMM TIGR03368; cellulose synthase operon protein YhjU 3819537..3821216 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047654.1 CDS SeHA_C3944 NC_011083.1 3821779 3821919 D hypothetical protein 3821779..3821919 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047655.1 CDS SeHA_C3945 NC_011083.1 3822037 3823335 D inner membrane transport protein YhaO 3822037..3823335 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047656.1 CDS dppF NC_011083.1 3823436 3824449 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(3823436..3824449) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047657.1 CDS dppD NC_011083.1 3824446 3825429 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit complement(3824446..3825429) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047658.1 CDS dppC NC_011083.1 3825440 3826342 R identified by match to protein family HMM PF00528; dipeptide transporter complement(3825440..3826342) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047659.1 CDS dppB NC_011083.1 3826352 3827371 R transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB complement(3826352..3827371) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047660.1 CDS dppA NC_011083.1 3827528 3829108 R identified by match to protein family HMM PF00496; dipeptide ABC transporter substrate-binding protein complement(3827528..3829108) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047661.1 CDS SeHA_C3951 NC_011083.1 3829691 3831016 R identified by match to protein family HMM PF00860; xanthine/uracil/vitamin C permease complement(3829691..3831016) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047662.1 CDS SeHA_C3952 NC_011083.1 3831074 3832198 R PQQ enzyme repeat complement(3831074..3832198) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047663.1 CDS SeHA_C3953 NC_011083.1 3832251 3832364 D identified by glimmer; putative; hypothetical protein 3832251..3832364 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047664.1 CDS SeHA_C3954 NC_011083.1 3832348 3833355 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI 3832348..3833355 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047665.1 CDS SeHA_C3957 NC_011083.1 3833668 3835359 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase complement(3833668..3835359) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047666.1 CDS SeHA_C3958 NC_011083.1 3835577 3836104 R identified by match to protein family HMM PF00419; hypothetical protein complement(3835577..3836104) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_003495233.1 CDS SeHA_C3959 NC_011083.1 3836110 3837189 R long polar fimbrial protein complement(3836110..3837189) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047667.1 CDS SeHA_C3960 NC_011083.1 3837207 3839735 R identified by match to protein family HMM PF00577; outer membrane usher protein FimD complement(3837207..3839735) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047668.1 CDS SeHA_C3961 NC_011083.1 3839758 3840456 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pili assembly chaperone complement(3839758..3840456) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047669.1 CDS SeHA_C3962 NC_011083.1 3840541 3841065 R identified by match to protein family HMM PF00419; long polar fimbria protein A complement(3840541..3841065) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047670.1 CDS SeHA_C3963 NC_011083.1 3841583 3842287 R lipase complement(3841583..3842287) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047671.1 CDS SeHA_C3964 NC_011083.1 3842444 3843025 D 'constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine'; 3-methyladenine DNA glycosylase 3842444..3843025 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047672.1 CDS SeHA_C3965 NC_011083.1 3843003 3843443 D identified by match to protein family HMM PF00583; hypothetical protein 3843003..3843443 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047673.1 CDS SeHA_C3967 NC_011083.1 3843412 3845745 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; biotin sulfoxide reductase complement(3843412..3845745) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047674.1 CDS SeHA_C3966 NC_011083.1 3845730 3845846 D identified by glimmer; putative; hypothetical protein 3845730..3845846 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047675.1 CDS SeHA_C3968 NC_011083.1 3845898 3846560 D identified by match to protein family HMM PF00691; match to protein family HMM PF05433; outer membrane lipoprotein 3845898..3846560 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047676.1 CDS SeHA_C3969 NC_011083.1 3846779 3847753 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; 2-ketogluconate reductase 3846779..3847753 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047677.1 CDS SeHA_C3970 NC_011083.1 3847803 3848513 R hypothetical protein complement(3847803..3848513) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047678.1 CDS SeHA_C3971 NC_011083.1 3848663 3848794 R identified by glimmer; putative; hypothetical protein complement(3848663..3848794) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047679.1 CDS SeHA_C3972 NC_011083.1 3848951 3849241 D transcriptional regulator 3848951..3849241 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047680.1 CDS SeHA_C3973 NC_011083.1 3849530 3849742 D identified by match to protein family HMM PF00313; major cold shock protein 3849530..3849742 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047681.1 CDS SeHA_C3974 NC_011083.1 3849916 3850455 D hypothetical protein 3849916..3850455 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047682.1 CDS SeHA_C3975 NC_011083.1 3851300 3851566 R identified by match to protein family HMM PF08681; hypothetical protein complement(3851300..3851566) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047683.1 CDS glyS NC_011083.1 3852861 3854930 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(3852861..3854930) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047684.1 CDS glyQ NC_011083.1 3854940 3855851 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(3854940..3855851) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047685.2 CDS SeHA_C3980 NC_011083.1 3855990 3856292 R hypothetical protein complement(3855990..3856292) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047687.1 CDS SeHA_C3981 NC_011083.1 3856458 3857453 D identified by match to protein family HMM PF01757; acyltransferase 3 3856458..3857453 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047688.1 CDS SeHA_C3982 NC_011083.1 3857476 3857829 R identified by match to protein family HMM PF05360; hypothetical protein complement(3857476..3857829) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047689.1 CDS xylB NC_011083.1 3858004 3859458 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312; xylulokinase complement(3858004..3859458) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047690.1 CDS xylA NC_011083.1 3859558 3860880 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(3859558..3860880) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047691.1 CDS SeHA_C3985 NC_011083.1 3861243 3862421 D identified by match to protein family HMM PF00165; xylose operon regulatory protein 3861243..3862421 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047692.1 CDS bax NC_011083.1 3862482 3863405 R identified by match to protein family HMM PF01832; hypothetical protein complement(3862482..3863405) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047693.1 CDS malS NC_011083.1 3863622 3865649 D 'periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds'; periplasmic alpha-amylase 3863622..3865649 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047694.1 CDS avtA NC_011083.1 3865823 3867073 D 'transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis'; valine--pyruvate transaminase 3865823..3867073 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047695.1 CDS SeHA_C3989 NC_011083.1 3867110 3867583 R identified by match to protein family HMM PF00037; hypothetical protein complement(3867110..3867583) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047696.1 CDS SeHA_C3990 NC_011083.1 3867700 3868500 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; hth-type tranScriptional regulator yiaj complement(3867700..3868500) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047697.1 CDS SeHA_C3991 NC_011083.1 3868730 3869728 D 'NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate'; 2,3-diketo-L-gulonate reductase 3868730..3869728 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047698.1 CDS SeHA_C3992 NC_011083.1 3869740 3870204 D identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 3869740..3870204 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047699.1 CDS SeHA_C3993 NC_011083.1 3870228 3871160 D hypothetical protein 3870228..3871160 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047700.1 CDS SeHA_C3994 NC_011083.1 3871299 3871772 D 'membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO'; 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM 3871299..3871772 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047701.1 CDS SeHA_C3995 NC_011083.1 3871775 3873052 D identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; 2,3-diketo-l-gulonate trap transporter large permease yian 3871775..3873052 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047702.1 CDS SeHA_C3996 NC_011083.1 3873064 3874050 D identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap transporter solute receptor 3873064..3874050 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047703.1 CDS SeHA_C3997 NC_011083.1 3874054 3875550 D identified by match to protein family HMM PF00370; match to protein family HMM PF02782; L-xylulose/3-keto-L-gulonate kinase 3874054..3875550 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047704.1 CDS sgbH NC_011083.1 3875547 3876209 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3875547..3876209 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047705.1 CDS SeHA_C3999 NC_011083.1 3876202 3877062 D 'L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate'; L-xylulose 5-phosphate 3-epimerase 3876202..3877062 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047706.1 CDS sgbE NC_011083.1 3877056 3877751 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3877056..3877751 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047707.1 CDS SeHA_C4001 NC_011083.1 3877912 3878727 R identified by match to protein family HMM PF00165; transcriptional regulator complement(3877912..3878727) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047708.1 CDS SeHA_C4002 NC_011083.1 3878991 3880946 D identified by match to protein family HMM PF07944; hypothetical protein 3878991..3880946 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047709.1 CDS aldB NC_011083.1 3881064 3882602 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase B complement(3881064..3882602) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047710.1 CDS SeHA_C4004 NC_011083.1 3882771 3883652 D identified by match to protein family HMM PF00480; transcriptional regulator 3882771..3883652 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047711.1 CDS selB NC_011083.1 3883900 3885750 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00475; selenocysteinyl-tRNA-specific translation factor complement(3883900..3885750) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047712.1 CDS selA NC_011083.1 3885747 3887138 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(3885747..3887138) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047713.1 CDS SeHA_C4007 NC_011083.1 3887237 3887845 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase complement(3887237..3887845) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047714.1 CDS SeHA_C4008 NC_011083.1 3888321 3890237 D identified by match to protein family HMM PF00359; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system mannitol-specific transporter subunit IICBA 3888321..3890237 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047715.1 CDS mtlD NC_011083.1 3890458 3891606 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; mannitol-1-phosphate 5-dehydrogenase 3890458..3891606 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047716.1 CDS mtlR NC_011083.1 3891603 3892193 D Acts as a repressor of the mtlAD operon; mannitol repressor protein 3891603..3892193 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047717.1 CDS SeHA_C4011 NC_011083.1 3892203 3892412 R hypothetical protein complement(3892203..3892412) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047718.1 CDS SeHA_C4012 NC_011083.1 3892703 3893065 D hypothetical protein 3892703..3893065 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047719.1 CDS SeHA_C4013 NC_011083.1 3893146 3893307 D identified by glimmer; putative; hypothetical protein 3893146..3893307 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047720.1 CDS SeHA_C4014 NC_011083.1 3893553 3894236 D hypothetical protein 3893553..3894236 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047721.1 CDS SeHA_C4015 NC_011083.1 3894280 3898623 D identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; autotransporter 3894280..3898623 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047722.1 CDS SeHA_C4016 NC_011083.1 3898922 3900577 D identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 3898922..3900577 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047723.1 CDS SeHA_C4017 NC_011083.1 3900574 3901350 D represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3900574..3901350 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047724.1 CDS lldD NC_011083.1 3901347 3902537 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3901347..3902537 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047725.1 CDS SeHA_C4019 NC_011083.1 3902602 3903075 D member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA/rRNA methyltransferase YibK 3902602..3903075 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047726.1 CDS SeHA_C4021 NC_011083.1 3903143 3904198 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator complement(3903143..3904198) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047727.1 CDS SeHA_C4020 NC_011083.1 3904197 3904448 D identified by glimmer; putative; hypothetical protein 3904197..3904448 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047728.1 CDS SeHA_C4022 NC_011083.1 3904466 3905662 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein 3904466..3905662 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047729.1 CDS SeHA_C4023 NC_011083.1 3905736 3907046 D identified by match to protein family HMM PF07690; glucarate transporter 3905736..3907046 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047730.1 CDS cysE NC_011083.1 3907129 3907950 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(3907129..3907950) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047731.1 CDS gpsA NC_011083.1 3908028 3909047 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3908028..3909047) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047732.1 CDS secB NC_011083.1 3909047 3909514 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(3909047..3909514) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047733.1 CDS grxC NC_011083.1 3909558 3909809 R identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 complement(3909558..3909809) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047734.1 CDS SeHA_C4028 NC_011083.1 3909895 3910326 R identified by match to protein family HMM PF00581; rhodanese domain-containing protein complement(3909895..3910326) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047735.1 CDS gpmI NC_011083.1 3910574 3912118 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3910574..3912118 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047736.1 CDS SeHA_C4030 NC_011083.1 3912128 3913411 D identified by match to protein family HMM PF01551; hypothetical protein 3912128..3913411 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047737.1 CDS SeHA_C4031 NC_011083.1 3913415 3914377 D identified by match to protein family HMM PF04748; divergent polysaccharide deacetylase 3913415..3914377 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047738.1 CDS SeHA_C4032 NC_011083.1 3914364 3915398 R identified by match to protein family HMM PF00535; glycosyl transferase complement(3914364..3915398) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047739.1 CDS tdh NC_011083.1 3915892 3916917 R 'converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism'; L-threonine 3-dehydrogenase complement(3915892..3916917) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047740.1 CDS kbl NC_011083.1 3916927 3918123 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(3916927..3918123) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047741.1 CDS rfaD NC_011083.1 3918326 3919258 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3918326..3919258 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047742.1 CDS rfaF NC_011083.1 3919261 3920307 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3919261..3920307 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047743.1 CDS rfaC NC_011083.1 3920307 3921260 D identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193; ADP-heptose--LPS heptosyltransferase 3920307..3921260 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047744.1 CDS SeHA_C4038 NC_011083.1 3921300 3922514 D identified by match to protein family HMM PF04932; O-antigen ligase 3921300..3922514 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047745.1 CDS SeHA_C4039 NC_011083.1 3922571 3923716 R identified by match to protein family HMM PF00534; lipopolysaccharide 1,2-N-acetylglucosaminetransferase complement(3922571..3923716) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047746.1 CDS SeHA_C4040 NC_011083.1 3923817 3924626 R lipopolysaccharide core biosynthesis protein complement(3923817..3924626) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047747.1 CDS SeHA_C4041 NC_011083.1 3924776 3925474 R identified by match to protein family HMM PF06176; lipopolysaccharide core biosynthesis protein complement(3924776..3925474) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047748.1 CDS SeHA_C4042 NC_011083.1 3925497 3926507 R identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,2-glucosyltransferase complement(3925497..3926507) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047749.1 CDS SeHA_C4043 NC_011083.1 3926525 3927538 R identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,3-galactosyltransferase complement(3926525..3927538) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047750.1 CDS SeHA_C4044 NC_011083.1 3927544 3928623 R identified by match to protein family HMM PF00534; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(3927544..3928623) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047751.1 CDS SeHA_C4045 NC_011083.1 3928693 3928902 R hypothetical protein complement(3928693..3928902) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047752.1 CDS SeHA_C4046 NC_011083.1 3928958 3929755 R identified by match to protein family HMM PF06293; lipopolysaccharide core biosynthesis protein RfaP complement(3928958..3929755) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047753.1 CDS SeHA_C4047 NC_011083.1 3929748 3930872 R identified by match to protein family HMM PF00534; lipopolysaccharide core biosynthesis protein RfaG complement(3929748..3930872) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047754.1 CDS SeHA_C4048 NC_011083.1 3930869 3931939 R identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201; lipopolysaccharide core biosynthesis protein complement(3930869..3931939) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047755.1 CDS SeHA_C4049 NC_011083.1 3932049 3932168 R identified by glimmer; putative; hypothetical protein complement(3932049..3932168) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047756.1 CDS waaA NC_011083.1 3932348 3933625 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3932348..3933625 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047757.1 CDS coaD NC_011083.1 3933634 3934113 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3933634..3934113 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047758.1 CDS mutM NC_011083.1 3934141 3934950 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3934141..3934950) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047759.1 CDS rpmG NC_011083.1 3935048 3935215 R 'in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif'; 50S ribosomal protein L33 complement(3935048..3935215) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047760.1 CDS rpmB NC_011083.1 3935236 3935472 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(3935236..3935472) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047761.1 CDS radC NC_011083.1 3935690 3936355 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(3935690..3936355) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083712.1 CDS coaBC NC_011083.1 3936528 3937751 D bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3936528..3937751 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047762.1 CDS dut NC_011083.1 3937729 3938187 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3937729..3938187 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047763.1 CDS slmA NC_011083.1 3938295 3938891 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3938295..3938891 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047764.1 CDS pyrE NC_011083.1 3938969 3939610 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(3938969..3939610) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047765.1 CDS rph NC_011083.1 3939689 3940405 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(3939689..3940405) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047766.1 CDS SeHA_C4061 NC_011083.1 3940531 3941394 D identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 3940531..3941394 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047767.1 CDS SeHA_C4062 NC_011083.1 3941444 3942346 R identified by match to protein family HMM PF00126; LysR family transcriptional regulator complement(3941444..3942346) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047768.1 CDS SeHA_C4063 NC_011083.1 3942420 3943301 D identified by match to protein family HMM PF00753; beta-lactamase 3942420..3943301 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047769.1 CDS SeHA_C4064 NC_011083.1 3943552 3944169 D identified by match to protein family HMM PF03458; hypothetical protein 3943552..3944169 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047770.1 CDS ligB NC_011083.1 3944166 3945851 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB complement(3944166..3945851) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047771.1 CDS gmk NC_011083.1 3946108 3946731 D 'Essential for recycling GMP and indirectly, cGMP'; guanylate kinase 3946108..3946731 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047772.1 CDS rpoZ NC_011083.1 3946786 3947061 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3946786..3947061 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047773.1 CDS SeHA_C4068 NC_011083.1 3947080 3949191 D identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3947080..3949191 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047774.1 CDS trmH NC_011083.1 3949196 3949885 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3949196..3949885 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047775.1 CDS recG NC_011083.1 3949891 3951972 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3949891..3951972 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047776.1 CDS SeHA_C4071 NC_011083.1 3951975 3952826 R hypothetical protein complement(3951975..3952826) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047777.1 CDS gltS NC_011083.1 3952829 3954034 R identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter complement(3952829..3954034) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047778.1 CDS SeHA_C4073 NC_011083.1 3954262 3955653 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil-xanthine permease 3954262..3955653 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047779.1 CDS SeHA_C4074 NC_011083.1 3955804 3957483 D identified by match to protein family HMM PF05170; AsmA family protein 3955804..3957483 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047780.1 CDS SeHA_C4075 NC_011083.1 3957586 3959904 R 'catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides'; alpha-xylosidase complement(3957586..3959904) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047781.1 CDS SeHA_C4076 NC_011083.1 3959916 3961298 R may be involved in the transport of galactosides-pentoses-hexuronides; transporter complement(3959916..3961298) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047782.1 CDS SeHA_C4078 NC_011083.1 3961790 3961915 D identified by glimmer; putative; hypothetical protein 3961790..3961915 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047783.1 CDS SeHA_C4079 NC_011083.1 3961997 3962341 R hypothetical protein complement(3961997..3962341) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047784.1 CDS SeHA_C4082 NC_011083.1 3964743 3965780 D virulence protein 3964743..3965780 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047785.1 CDS SeHA_C4083 NC_011083.1 3965892 3966065 R ISxac3 transposase complement(3965892..3966065) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047786.1 CDS SeHA_C4084 NC_011083.1 3967079 3967696 D hypothetical protein 3967079..3967696 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083713.1 CDS SeHA_C4085 NC_011083.1 3967771 3970638 D outer membrane autotransporter 3967771..3970638 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047787.1 CDS SeHA_C4086 NC_011083.1 3970733 3971215 R hypothetical protein complement(3970733..3971215) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047788.1 CDS SeHA_C4087 NC_011083.1 3971208 3971972 R identified by match to protein family HMM PF00486; transcriptional regulator C complement(3971208..3971972) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047789.1 CDS SeHA_C4088 NC_011083.1 3972384 3973364 R identified by match to protein family HMM PF01609; IS5 transposase complement(3972384..3973364) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047790.1 CDS SeHA_C4089 NC_011083.1 3973868 3973993 D identified by glimmer; putative; hypothetical protein 3973868..3973993 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047791.1 CDS SeHA_C4090 NC_011083.1 3974048 3974728 D identified by match to protein family HMM PF00857; hypothetical protein 3974048..3974728 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047792.1 CDS SeHA_C4091 NC_011083.1 3974957 3975484 R hypothetical protein complement(3974957..3975484) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047793.1 CDS mgtA NC_011083.1 3975751 3978477 R identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase complement(3975751..3978477) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047795.1 CDS SeHA_C4094 NC_011083.1 3978697 3979374 R identified by match to protein family HMM PF02308; hypothetical protein complement(3978697..3979374) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047796.1 CDS SeHA_C4095 NC_011083.1 3979856 3980803 D identified by match to protein family HMM PF00892; match to protein family HMM TIGR00950; carboxylate/amino acid/amine transporter 3979856..3980803 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047797.1 CDS SeHA_C4096 NC_011083.1 3980846 3981787 R identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein complement(3980846..3981787) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047798.1 CDS SeHA_C4097 NC_011083.1 3982023 3982766 R identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581; hypothetical protein complement(3982023..3982766) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047799.1 CDS SeHA_C4098 NC_011083.1 3982753 3983862 R identified by match to protein family HMM PF03841; match to protein family HMM TIGR01437; pyridoxal phosphate-dependent protein complement(3982753..3983862) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047800.1 CDS SeHA_C4099 NC_011083.1 3983866 3984726 R identified by match to protein family HMM PF03613; PTS system mannose/fructose/sorbose family transporter subunit IID complement(3983866..3984726) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047801.1 CDS SeHA_C4100 NC_011083.1 3984723 3985472 R identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC complement(3984723..3985472) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047802.1 CDS SeHA_C4101 NC_011083.1 3985618 3986103 R identified by match to protein family HMM PF03830; PTS system sorbose subfamily transporter subunit IIB complement(3985618..3986103) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047803.1 CDS SeHA_C4102 NC_011083.1 3986114 3986539 R identified by match to protein family HMM PF03610; PTS system fructose transporter subunit IIA complement(3986114..3986539) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047804.1 CDS SeHA_C4103 NC_011083.1 3986758 3989556 R identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF07728; sigma-54 dependent transcription regulator complement(3986758..3989556) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047805.1 CDS SeHA_C4104 NC_011083.1 3989753 3990046 D hypothetical protein 3989753..3990046 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047806.1 CDS SeHA_C4105 NC_011083.1 3990031 3990174 D identified by glimmer; putative; hypothetical protein 3990031..3990174 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047807.1 CDS SeHA_C4106 NC_011083.1 3990152 3991534 D identified by match to protein family HMM PF00232; beta-glucosidase 3990152..3991534 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047808.1 CDS SeHA_C4108 NC_011083.1 3992958 3993362 D identified by match to protein family HMM PF06296; hypothetical protein 3992958..3993362 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047809.1 CDS SeHA_C4109 NC_011083.1 3993346 3993669 D DNA-binding protein 3993346..3993669 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047810.1 CDS SeHA_C4110 NC_011083.1 3993760 3994029 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system HPr enzyme complement(3993760..3994029) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047811.1 CDS gatY NC_011083.1 3994039 3994899 R 'class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis'; fructose-1,6-bisphosphate aldolase complement(3994039..3994899) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047812.1 CDS SeHA_C4112 NC_011083.1 3994962 3996446 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; sugar kinase complement(3994962..3996446) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047813.1 CDS SeHA_C4113 NC_011083.1 3996439 3997797 R identified by match to protein family HMM PF03611; PTS system galactitol-specific transporter subunit IIC complement(3996439..3997797) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047814.1 CDS SeHA_C4114 NC_011083.1 3997873 3998160 R PTS system transporter subunit IIB complement(3997873..3998160) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047815.1 CDS SeHA_C4115 NC_011083.1 3998157 3998630 R identified by match to protein family HMM PF00359; PTS system sugar transporter subunit IIA complement(3998157..3998630) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047816.1 CDS SeHA_C4116 NC_011083.1 3998648 3999391 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(3998648..3999391) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047817.1 CDS SeHA_C4117 NC_011083.1 3999744 4000196 R identified by match to protein family HMM PF06711; hypothetical protein complement(3999744..4000196) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047818.1 CDS uhpT NC_011083.1 4000389 4001780 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter complement(4000389..4001780) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047819.1 CDS uhpC NC_011083.1 4001923 4003251 R membrane protein regulates uhpT expression; regulatory protein UhpC complement(4001923..4003251) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047820.1 CDS uhpB NC_011083.1 4003261 4004763 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB complement(4003261..4004763) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047821.1 CDS uhpA NC_011083.1 4004763 4005353 R 'response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter'; DNA-binding transcriptional activator UhpA complement(4004763..4005353) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047822.1 CDS SeHA_C4122 NC_011083.1 4005428 4006441 R DeoX protein complement(4005428..4006441) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047823.1 CDS fucP NC_011083.1 4006453 4007769 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose:H+ symporter permease complement(4006453..4007769) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047824.1 CDS rbsK NC_011083.1 4007800 4008720 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase complement(4007800..4008720) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047825.1 CDS SeHA_C4125 NC_011083.1 4009045 4009830 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; deoxyribose operon repressor 4009045..4009830 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047826.1 CDS ilvN NC_011083.1 4009832 4010122 R 'with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit'; acetolactate synthase 1 regulatory subunit complement(4009832..4010122) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047827.1 CDS ilvB NC_011083.1 4010126 4011814 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase catalytic subunit complement(4010126..4011814) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047828.1 CDS SeHA_C4128 NC_011083.1 4012835 4013695 D identified by match to protein family HMM PF00892; integral membrane protein 4012835..4013695 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047829.1 CDS emrD NC_011083.1 4013922 4015082 D multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 4013922..4015082 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047830.1 CDS dsdC NC_011083.1 4016158 4017081 R regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC complement(4016158..4017081) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047831.1 CDS SeHA_C4131 NC_011083.1 4017307 4018644 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 4017307..4018644 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047832.1 CDS dsdA NC_011083.1 4018662 4019984 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 4018662..4019984 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047833.1 CDS SeHA_C4133 NC_011083.1 4020066 4020596 R hypothetical protein complement(4020066..4020596) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047834.1 CDS SeHA_C4134 NC_011083.1 4020593 4020955 R hypothetical protein complement(4020593..4020955) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047835.1 CDS SeHA_C4135 NC_011083.1 4020945 4021292 R identified by match to protein family HMM PF02656; hypothetical protein complement(4020945..4021292) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047836.1 CDS SeHA_C4136 NC_011083.1 4021312 4021446 R identified by glimmer; putative; hypothetical protein complement(4021312..4021446) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047837.1 CDS SeHA_C4137 NC_011083.1 4021446 4021574 D identified by glimmer; putative; hypothetical protein 4021446..4021574 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047838.1 CDS SeHA_C4138 NC_011083.1 4021736 4023397 R identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein complement(4021736..4023397) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047839.1 CDS ibpB NC_011083.1 4023586 4024014 R '16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent'; heat shock chaperone IbpB complement(4023586..4024014) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047840.1 CDS ibpA NC_011083.1 4024123 4024542 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA complement(4024123..4024542) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047841.1 CDS SeHA_C4142 NC_011083.1 4024800 4024919 R hypothetical protein complement(4024800..4024919) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047842.1 CDS SeHA_C4141 NC_011083.1 4024918 4025178 D identified by match to protein family HMM PF07119; hypothetical protein 4024918..4025178 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083714.1 CDS SeHA_C4143 NC_011083.1 4025180 4026406 R hypothetical protein complement(4025180..4026406) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047843.1 CDS SeHA_C4144 NC_011083.1 4026528 4027571 R identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 complement(4026528..4027571) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047844.1 CDS SeHA_C4145 NC_011083.1 4027568 4028125 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interchange protein DsbE complement(4027568..4028125) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047845.1 CDS ccmF NC_011083.1 4028122 4030053 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF complement(4028122..4030053) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047846.1 CDS SeHA_C4147 NC_011083.1 4030050 4030529 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(4030050..4030529) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047847.1 CDS ccmD NC_011083.1 4030526 4030699 R identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; heme exporter protein CcmD complement(4030526..4030699) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047848.1 CDS SeHA_C4149 NC_011083.1 4030735 4031481 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC superfamily protein complement(4030735..4031481) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047849.1 CDS ccmB NC_011083.1 4031524 4032180 R identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB complement(4031524..4032180) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047850.1 CDS ccmA NC_011083.1 4032180 4032806 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(4032180..4032806) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047851.1 CDS SeHA_C4152 NC_011083.1 4032803 4034203 R identified by match to protein family HMM PF03150; cytoChrome-c peroxidase complement(4032803..4034203) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047852.1 CDS torD NC_011083.1 4034393 4035025 R 'TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor'; chaperone protein TorD complement(4034393..4035025) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047853.1 CDS torA NC_011083.1 4035018 4037570 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; match to protein family HMM TIGR01409; match to protein family HMM TIGR02164; trimethylamine-N-oxide reductase TorA complement(4035018..4037570) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047854.1 CDS torC NC_011083.1 4037560 4038744 R identified by match to protein family HMM PF03264; match to protein family HMM TIGR02162; cytochrome c-type protein torC complement(4037560..4038744) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047855.1 CDS SeHA_C4156 NC_011083.1 4038838 4039566 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 4038838..4039566 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047856.1 CDS torT NC_011083.1 4039539 4040579 R periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT complement(4039539..4040579) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047857.1 CDS SeHA_C4159 NC_011083.1 4040604 4040720 R identified by glimmer; putative; hypothetical protein complement(4040604..4040720) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047858.1 CDS torS NC_011083.1 4040707 4043394 D Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 4040707..4043394 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047859.1 CDS SeHA_C4160 NC_011083.1 4043420 4044718 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00881; match to protein family HMM TIGR00893; d-galactonate transporter complement(4043420..4044718) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047860.1 CDS SeHA_C4161 NC_011083.1 4044842 4045990 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; galactonate dehydratase complement(4044842..4045990) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047861.1 CDS SeHA_C4162 NC_011083.1 4045987 4046604 R catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(4045987..4046604) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047862.1 CDS SeHA_C4163 NC_011083.1 4046588 4047466 R identified by match to protein family HMM PF05035; 2-dehydro-3-deoxygalactonokinase complement(4046588..4047466) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047863.1 CDS dgoR NC_011083.1 4047463 4048152 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; galactonate operon transcriptional repressor complement(4047463..4048152) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047864.1 CDS SeHA_C4165 NC_011083.1 4048413 4049258 R 'YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins'; sugar phosphatase complement(4048413..4049258) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047865.1 CDS SeHA_C4166 NC_011083.1 4049565 4050827 D identified by match to protein family HMM PF07690; permease 4049565..4050827 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047866.1 CDS SeHA_C4167 NC_011083.1 4050844 4052034 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein 4050844..4052034 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047867.1 CDS SeHA_C4168 NC_011083.1 4052149 4053045 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 4052149..4053045 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047868.1 CDS gyrB NC_011083.1 4053064 4055478 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(4053064..4055478) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047869.1 CDS recF NC_011083.1 4055507 4056580 R 'Required for DNA replication; binds preferentially to single-stranded, linear DNA'; recombination protein F complement(4055507..4056580) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047870.1 CDS dnaN NC_011083.1 4056728 4057828 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(4056728..4057828) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047871.1 CDS dnaA NC_011083.1 4057833 4059233 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(4057833..4059233) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047872.1 CDS rpmH NC_011083.1 4059894 4060034 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4059894..4060034 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047873.1 CDS rnpA NC_011083.1 4060051 4060410 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4060051..4060410 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047874.1 CDS SeHA_C4176 NC_011083.1 4060634 4062280 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 4060634..4062280 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047875.1 CDS trmE NC_011083.1 4062382 4063785 D 'in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE'; tRNA modification GTPase TrmE 4062382..4063785 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047876.1 CDS SeHA_C4178 NC_011083.1 4063968 4065155 D Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 4063968..4065155 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047877.1 CDS SeHA_C4179 NC_011083.1 4065124 4066083 D Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 4065124..4066083 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047878.1 CDS SeHA_C4180 NC_011083.1 4066241 4066996 D hypothetical protein 4066241..4066996 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047879.1 CDS SeHA_C4181 NC_011083.1 4067014 4067580 D identified by match to protein family HMM PF03358; hypothetical protein 4067014..4067580 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047880.1 CDS SeHA_C4182 NC_011083.1 4067625 4068962 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; hypothetical protein complement(4067625..4068962) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047881.1 CDS SeHA_C4183 NC_011083.1 4069131 4069796 D 'YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily'; 6-phosphogluconate phosphatase 4069131..4069796 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047882.1 CDS phoU NC_011083.1 4069891 4070616 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(4069891..4070616) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047883.1 CDS pstB NC_011083.1 4070631 4071440 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(4070631..4071440) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047884.1 CDS pstA NC_011083.1 4071491 4072381 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(4071491..4072381) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047885.1 CDS pstC NC_011083.1 4072381 4073340 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC complement(4072381..4073340) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047886.1 CDS pstS NC_011083.1 4073476 4074516 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein complement(4073476..4074516) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047887.1 CDS SeHA_C4189 NC_011083.1 4074683 4076056 R identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427; PTS system fructose-specific transporter subunit IIBC complement(4074683..4076056) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047888.1 CDS SeHA_C4190 NC_011083.1 4076105 4076923 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4076105..4076923) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047889.1 CDS SeHA_C4191 NC_011083.1 4076985 4078775 D identified by match to protein family HMM PF00496; HTH-type transcriptional regulator SgrR 4076985..4078775 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047890.1 CDS glmS NC_011083.1 4078926 4080755 R 'Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source'; glucosamine--fructose-6-phosphate aminotransferase complement(4078926..4080755) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047891.1 CDS glmU NC_011083.1 4080944 4082314 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4080944..4082314) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047892.1 CDS SeHA_C4194 NC_011083.1 4082634 4083332 R permease complement(4082634..4083332) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047893.1 CDS atpC NC_011083.1 4083562 4083975 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4083562..4083975) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047894.1 CDS atpD NC_011083.1 4084002 4085384 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4084002..4085384) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047895.1 CDS atpG NC_011083.1 4085411 4086274 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4085411..4086274) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047896.1 CDS atpA NC_011083.1 4086325 4087866 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4086325..4087866) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047897.1 CDS atpH NC_011083.1 4087879 4088412 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4087879..4088412) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047898.1 CDS atpF NC_011083.1 4088427 4088897 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4088427..4088897) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047899.1 CDS atpE NC_011083.1 4088957 4089196 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4088957..4089196) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047900.1 CDS atpB NC_011083.1 4089243 4090058 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4089243..4090058) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047901.2 CDS atpI NC_011083.1 4090067 4090447 R ATP synthase F0, I subunit complement(4090067..4090447) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047902.1 CDS SeHA_C4204 NC_011083.1 4090562 4090705 R hypothetical protein complement(4090562..4090705) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047903.1 CDS SeHA_C4205 NC_011083.1 4090813 4090950 R identified by glimmer; putative; hypothetical protein complement(4090813..4090950) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047904.1 CDS gidB NC_011083.1 4091063 4091686 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4091063..4091686) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047905.1 CDS gidA NC_011083.1 4091789 4093678 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4091789..4093678) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047906.1 CDS mioC NC_011083.1 4094057 4094500 R 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin complement(4094057..4094500) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047907.1 CDS asnC NC_011083.1 4094590 4095048 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(4094590..4095048) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047908.1 CDS asnA NC_011083.1 4095199 4096191 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4095199..4096191 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047909.1 CDS yieM NC_011083.1 4096196 4097647 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein complement(4096196..4097647) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047910.1 CDS SeHA_C4212 NC_011083.1 4097641 4099137 R 'interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase'; regulatory ATPase RavA complement(4097641..4099137) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047911.1 CDS trkD NC_011083.1 4099485 4101353 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4099485..4101353 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047912.1 CDS rbsD NC_011083.1 4101550 4101969 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4101550..4101969 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047913.1 CDS rbsA NC_011083.1 4101932 4103482 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 4101932..4103482 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047914.1 CDS rbsC NC_011083.1 4103488 4104453 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4103488..4104453 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047915.1 CDS rbsB NC_011083.1 4104478 4105368 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4104478..4105368 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047916.1 CDS rbsK NC_011083.1 4105502 4106431 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4105502..4106431 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047917.1 CDS rbsR NC_011083.1 4106435 4107433 D DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4106435..4107433 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047918.1 CDS SeHA_C4220 NC_011083.1 4107399 4108826 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; inner membrane transport protein YieO complement(4107399..4108826) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047919.1 CDS SeHA_C4221 NC_011083.1 4108838 4109542 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(4108838..4109542) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047920.1 CDS hdfR NC_011083.1 4115434 4116270 R Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR complement(4115434..4116270) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047921.1 CDS SeHA_C4230 NC_011083.1 4116389 4116727 D identified by match to protein family HMM PF04219; hypothetical protein 4116389..4116727 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047922.1 CDS SeHA_C4231 NC_011083.1 4116752 4118272 R 'among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function'; ATP-dependent protease complement(4116752..4118272) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047923.1 CDS ilvG NC_011083.1 4118862 4120508 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4118862..4120508 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047924.1 CDS ilvM NC_011083.1 4120505 4120768 D acetolactate synthase 2 regulatory subunit 4120505..4120768 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047925.1 CDS ilvE NC_011083.1 4120786 4121715 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4120786..4121715 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047926.1 CDS ilvD NC_011083.1 4121876 4123726 D 'catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis'; dihydroxy-acid dehydratase 4121876..4123726 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047927.1 CDS ilvA NC_011083.1 4123729 4125273 D 'threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway'; threonine dehydratase 4123729..4125273 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047928.1 CDS SeHA_C4237 NC_011083.1 4125511 4125873 D identified by match to protein family HMM PF05973; hypothetical protein 4125511..4125873 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047929.1 CDS SeHA_C4238 NC_011083.1 4125870 4126211 D XRE family transcriptional regulator 4125870..4126211 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047930.1 CDS SeHA_C4239 NC_011083.1 4126214 4127101 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(4126214..4127101) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047931.1 CDS SeHA_C4240 NC_011083.1 4127266 4128741 D 'catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis'; ketol-acid reductoisomerase 4127266..4128741 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047932.1 CDS SeHA_C4241 NC_011083.1 4128833 4129114 R identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase C complement(4128833..4129114) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047933.1 CDS rep NC_011083.1 4129652 4131676 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4129652..4131676 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047934.1 CDS gppA NC_011083.1 4131716 4133197 R 'catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation'; guanosine pentaphosphate phosphohydrolase complement(4131716..4133197) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047935.1 CDS rhlB NC_011083.1 4133334 4134599 R 'enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation'; ATP-dependent RNA helicase RhlB complement(4133334..4134599) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047936.1 CDS trxA NC_011083.1 4134743 4135072 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 4134743..4135072 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047937.1 CDS rho NC_011083.1 4135491 4136750 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4135491..4136750 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047938.1 CDS wecA NC_011083.1 4136980 4138083 D identified by match to protein family HMM PF00953; match to protein family HMM TIGR02380; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4136980..4138083 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047939.1 CDS SeHA_C4248 NC_011083.1 4138095 4139141 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4138095..4139141 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047940.1 CDS SeHA_C4249 NC_011083.1 4139197 4140327 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 4139197..4140327 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047941.1 CDS wecC NC_011083.1 4140324 4141586 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4140324..4141586 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047942.1 CDS rfbB2 NC_011083.1 4141586 4142653 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 4141586..4142653 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047943.1 CDS SeHA_C4252 NC_011083.1 4142686 4142910 D glucose-1-phosphate thymidylyltransferase 4142686..4142910 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047944.1 CDS wecD NC_011083.1 4142888 4143565 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR02382; TDP-fucosamine acetyltransferase 4142888..4143565 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047945.1 CDS wecE NC_011083.1 4143570 4144700 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4143570..4144700 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047946.1 CDS SeHA_C4255 NC_011083.1 4144702 4145952 D identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 4144702..4145952 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047947.1 CDS wecF NC_011083.1 4145949 4147028 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4145949..4147028 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047948.1 CDS wzyE NC_011083.1 4147025 4148383 D enterobacterial common antigen polymerase; common antigen polymerase 4147025..4148383 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047949.1 CDS SeHA_C4258 NC_011083.1 4148380 4149120 D identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; UDP-N-acetyl-D-mannosaminuronic acid transferase 4148380..4149120 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047950.1 CDS SeHA_C4259 NC_011083.1 4149327 4150712 D uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transport protein YifK 4149327..4150712 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047951.1 CDS hemY NC_011083.1 4151852 4153051 R identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM TIGR00540; protoheme IX biogenesis protein complement(4151852..4153051) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047952.1 CDS SeHA_C4266 NC_011083.1 4153051 4154220 R identified by match to protein family HMM PF04375; uroporphyrinogen III C-methyltransferase complement(4153051..4154220) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047953.1 CDS hemD NC_011083.1 4154242 4154982 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(4154242..4154982) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047954.1 CDS hemC NC_011083.1 4154979 4155935 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(4154979..4155935) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047955.1 CDS cyaA NC_011083.1 4156297 4158843 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4156297..4158843 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047956.1 CDS cyaY NC_011083.1 4158921 4159241 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(4158921..4159241) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047957.1 CDS SeHA_C4271 NC_011083.1 4159311 4159700 R hypothetical protein complement(4159311..4159700) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047958.1 CDS SeHA_C4274 NC_011083.1 4160394 4160597 D hypothetical protein 4160394..4160597 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047959.1 CDS dapF NC_011083.1 4160634 4161458 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4160634..4161458 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047960.1 CDS SeHA_C4276 NC_011083.1 4161455 4162162 D identified by match to protein family HMM PF04340; hypothetical protein 4161455..4162162 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047961.1 CDS xerC NC_011083.1 4162159 4163061 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4162159..4163061 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047962.1 CDS SeHA_C4278 NC_011083.1 4163061 4163777 D YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4163061..4163777 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047963.1 CDS uvrD NC_011083.1 4163913 4166075 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4163913..4166075 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047964.1 CDS corA NC_011083.1 4166547 4167497 D responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4166547..4167497 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047965.1 CDS SeHA_C4281 NC_011083.1 4168100 4168396 D hypothetical protein 4168100..4168396 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047966.1 CDS rarD NC_011083.1 4168436 4169323 R identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; hypothetical protein complement(4168436..4169323) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047967.1 CDS SeHA_C4283 NC_011083.1 4169367 4169834 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein complement(4169367..4169834) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047968.1 CDS SeHA_C4284 NC_011083.1 4169999 4170868 D catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4169999..4170868 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047969.1 CDS recQ NC_011083.1 4170934 4172781 D 'functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway'; ATP-dependent DNA helicase RecQ 4170934..4172781 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047970.1 CDS rhtC NC_011083.1 4172845 4173465 D identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; threonine efflux system 4172845..4173465 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047971.1 CDS rhtB NC_011083.1 4173505 4174125 R identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; homoserine/homoserine lactone efflux protein complement(4173505..4174125) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047972.1 CDS pldB NC_011083.1 4174236 4175252 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4174236..4175252 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083715.1 CDS SeHA_C4289 NC_011083.1 4175268 4176068 D hydrolase 4175268..4176068 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047973.1 CDS metR NC_011083.1 4176936 4177889 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator MetR complement(4176936..4177889) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047974.1 CDS metE NC_011083.1 4178138 4180402 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4178138..4180402 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047975.1 CDS SeHA_C4292 NC_011083.1 4180466 4180594 D identified by glimmer; putative; hypothetical protein 4180466..4180594 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047976.1 CDS SeHA_C4293 NC_011083.1 4180794 4182089 D identified by match to protein family HMM PF02810; match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 4180794..4182089 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047977.2 CDS SeHA_C4294 NC_011083.1 4182169 4182981 R identified by match to protein family HMM PF01738; dienelactone hydrolase complement(4182169..4182981) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047978.1 CDS udp NC_011083.1 4183240 4184001 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4183240..4184001 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047979.1 CDS SeHA_C4296 NC_011083.1 4184141 4185571 D YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4184141..4185571 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047980.1 CDS ubiE NC_011083.1 4185667 4186422 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4185667..4186422 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047981.1 CDS SeHA_C4298 NC_011083.1 4186432 4187037 D identified by match to protein family HMM PF02036; hypothetical protein 4186432..4187037 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047982.1 CDS ubiB NC_011083.1 4187034 4188674 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 4187034..4188674 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047983.1 CDS tatA NC_011083.1 4188880 4189134 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 4188880..4189134 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047984.1 CDS SeHA_C4301 NC_011083.1 4189138 4189686 D mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4189138..4189686 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047985.1 CDS tatC NC_011083.1 4189689 4190468 D with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4189689..4190468 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047986.1 CDS SeHA_C4303 NC_011083.1 4190498 4191292 D magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4190498..4191292 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047987.1 CDS rfaH NC_011083.1 4191300 4191788 R identified by match to protein family HMM PF02357; match to protein family HMM TIGR01955; transcriptional activator RfaH complement(4191300..4191788) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047988.1 CDS ubiD NC_011083.1 4191974 4193452 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4191974..4193452 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047989.1 CDS fre NC_011083.1 4193538 4194239 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4193538..4194239 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047990.1 CDS SeHA_C4307 NC_011083.1 4194493 4196316 D identified by match to protein family HMM PF05935; arylsulfotransferase 4194493..4196316 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047991.1 CDS fadA NC_011083.1 4196513 4197676 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(4196513..4197676) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047992.2 CDS fadB NC_011083.1 4197686 4199875 R 'includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids'; multifunctional fatty acid oxidation complex subunit alpha complement(4197686..4199875) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047993.1 CDS pepQ NC_011083.1 4200065 4201396 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4200065..4201396 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047994.1 CDS SeHA_C4311 NC_011083.1 4201396 4202010 D identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257; hypothetical protein 4201396..4202010 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047995.1 CDS trkH NC_011083.1 4202049 4203500 D identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; potassium transporter 4202049..4203500 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047996.1 CDS hemG NC_011083.1 4203512 4204057 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4203512..4204057 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047997.1 CDS mobB NC_011083.1 4210011 4210541 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein MobB complement(4210011..4210541) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047998.1 CDS mobA NC_011083.1 4210523 4211107 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4210523..4211107) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002047999.1 CDS SeHA_C4322 NC_011083.1 4211177 4211446 D identified by match to protein family HMM PF06288; hypothetical protein 4211177..4211446 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048000.1 CDS SeHA_C4323 NC_011083.1 4211523 4212509 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4211523..4212509 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048001.1 CDS SeHA_C4324 NC_011083.1 4212526 4213149 D identified by match to protein family HMM PF01323; protein disulfide isomerase I 4212526..4213149 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048002.1 CDS SeHA_C4325 NC_011083.1 4213162 4214070 R identified by match to protein family HMM PF01553; acyltransferase complement(4213162..4214070) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048003.1 CDS SeHA_C4326 NC_011083.1 4214268 4214399 R identified by glimmer; putative; hypothetical protein complement(4214268..4214399) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048004.1 CDS SeHA_C4327 NC_011083.1 4214458 4217244 D 'has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair'; DNA polymerase I 4214458..4217244 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048005.1 CDS engB NC_011083.1 4217579 4218211 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(4217579..4218211) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048006.1 CDS SeHA_C4331 NC_011083.1 4218794 4219309 D identified by match to protein family HMM PF04220; hypothetical protein 4218794..4219309 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048007.1 CDS hemN NC_011083.1 4219498 4220871 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4219498..4220871 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048008.1 CDS glnG NC_011083.1 4221184 4222593 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) complement(4221184..4222593) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048009.1 CDS glnL NC_011083.1 4222602 4223651 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) complement(4222602..4223651) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048010.1 CDS glnA NC_011083.1 4223926 4225335 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(4223926..4225335) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048011.1 CDS typA NC_011083.1 4225711 4227534 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein 4225711..4227534 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048012.1 CDS SeHA_C4337 NC_011083.1 4227589 4227768 R hypothetical protein complement(4227589..4227768) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048013.1 CDS ompL NC_011083.1 4227925 4228617 R porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L complement(4227925..4228617) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048014.1 CDS SeHA_C4339 NC_011083.1 4228685 4230109 R identified by match to protein family HMM TIGR00792; permease complement(4228685..4230109) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048015.1 CDS SeHA_C4340 NC_011083.1 4230149 4231531 R identified by match to protein family HMM TIGR00792; inner membrane symporter YihP complement(4230149..4231531) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048016.1 CDS SeHA_C4341 NC_011083.1 4231577 4233613 R identified by match to protein family HMM PF01055; alpha-glucosidase complement(4231577..4233613) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048017.1 CDS SeHA_C4342 NC_011083.1 4233737 4234612 R identified by match to protein family HMM PF01925; hypothetical protein complement(4233737..4234612) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048018.1 CDS SeHA_C4343 NC_011083.1 4234701 4235588 R identified by match to protein family HMM PF01263; aldose-1-epimerase family protein complement(4234701..4235588) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048019.1 CDS SeHA_C4344 NC_011083.1 4235675 4236916 R identified by match to protein family HMM PF07221; N-acylglucosamine 2-epimerase complement(4235675..4236916) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048020.1 CDS SeHA_C4345 NC_011083.1 4236932 4237810 R identified by match to protein family HMM PF01791; deoxyribose-phosphate aldolase complement(4236932..4237810) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048021.1 CDS SeHA_C4346 NC_011083.1 4237833 4238729 R identified by match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase complement(4237833..4238729) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048022.1 CDS SeHA_C4347 NC_011083.1 4238717 4238836 R identified by glimmer; putative; hypothetical protein complement(4238717..4238836) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048023.1 CDS SeHA_C4348 NC_011083.1 4238894 4239790 D identified by match to protein family HMM PF00294; kinase, PfkB family 4238894..4239790 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048024.1 CDS SeHA_C4349 NC_011083.1 4239824 4240627 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; glycerol-3-phosphate regulon repressor 4239824..4240627 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048025.1 CDS yihX NC_011083.1 4240818 4241417 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; phosphatase 4240818..4241417 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048026.1 CDS rbn NC_011083.1 4241411 4242283 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4241411..4242283 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048027.1 CDS dtd NC_011083.1 4242280 4242717 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4242280..4242717 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048028.1 CDS SeHA_C4353 NC_011083.1 4242762 4243703 D identified by match to protein family HMM PF00583; match to protein family HMM PF09500; match to protein family HMM TIGR02447; GNAT family acetyltransferase 4242762..4243703 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048029.1 CDS SeHA_C4354 NC_011083.1 4243718 4244146 R identified by match to protein family HMM PF01381; hypothetical protein complement(4243718..4244146) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048030.1 CDS SeHA_C4355 NC_011083.1 4244161 4244472 R hypothetical protein complement(4244161..4244472) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048031.1 CDS SeHA_C4356 NC_011083.1 4244558 4245487 R identified by match to protein family HMM PF07859; acetyl esterase complement(4244558..4245487) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048033.2 CDS SeHA_C4357 NC_011083.1 4245705 4246016 D hypothetical protein 4245705..4246016 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048034.1 CDS SeHA_C4359 NC_011083.1 4246017 4246307 D identified by match to protein family HMM PF01381; XRE family transcriptional regulator 4246017..4246307 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048035.1 CDS fdhE NC_011083.1 4246354 4247283 R required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE complement(4246354..4247283) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048036.1 CDS fdoI NC_011083.1 4247280 4247915 R cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma complement(4247280..4247915) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048037.1 CDS fdoH NC_011083.1 4247912 4248814 R identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase-O iron-sulfur subunit complement(4247912..4248814) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048038.1 CDS fdhD NC_011083.1 4252072 4252908 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4252072..4252908 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048039.1 CDS SeHA_C4366 NC_011083.1 4253176 4254207 R hypothetical protein complement(4253176..4254207) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048040.1 CDS SeHA_C4367 NC_011083.1 4254390 4255490 D hypothetical protein 4254390..4255490 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048041.1 CDS SeHA_C4368 NC_011083.1 4255526 4255639 D identified by glimmer; putative; hypothetical protein 4255526..4255639 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048042.1 CDS SeHA_C4369 NC_011083.1 4255834 4256157 R identified by match to protein family HMM PF05437; branched-chain amino acid transporter complement(4255834..4256157) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048043.1 CDS SeHA_C4370 NC_011083.1 4256157 4256816 R identified by match to protein family HMM PF03591; AzlC family protein complement(4256157..4256816) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048044.1 CDS SeHA_C4371 NC_011083.1 4256917 4257465 D identified by match to protein family HMM PF01381; match to protein family HMM PF07883; XRE family transcriptional regulator 4256917..4257465 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048045.1 CDS rhaU NC_011083.1 4257554 4257868 R identified by match to protein family HMM PF05336; match to protein family HMM TIGR02625; L-rhamnose 1-epimerase complement(4257554..4257868) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048046.1 CDS fucO NC_011083.1 4257865 4259013 R identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; lactaldehyde reductase complement(4257865..4259013) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048047.1 CDS rhaD NC_011083.1 4259140 4259967 R identified by match to protein family HMM PF00596; match to protein family HMM TIGR02624; rhamnulose-1-phosphate aldolase complement(4259140..4259967) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048048.1 CDS rhaA NC_011083.1 4260110 4261369 R catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase complement(4260110..4261369) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048049.1 CDS rhaB NC_011083.1 4261366 4262835 R catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase complement(4261366..4262835) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048050.1 CDS SeHA_C4377 NC_011083.1 4263123 4263959 D activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4263123..4263959 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048051.1 CDS SeHA_C4378 NC_011083.1 4264112 4264960 D activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4264112..4264960 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048052.1 CDS SeHA_C4379 NC_011083.1 4264957 4265991 R transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter complement(4264957..4265991) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048053.1 CDS SeHA_C4380 NC_011083.1 4265995 4266126 D hypothetical protein 4265995..4266126 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048054.1 CDS SeHA_C4381 NC_011083.1 4266622 4267293 D identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 4266622..4267293 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048055.1 CDS SeHA_C4382 NC_011083.1 4267452 4268759 R identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; trap dicarboxylate transporter subunit DctM complement(4267452..4268759) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048056.1 CDS SeHA_C4383 NC_011083.1 4268752 4269267 R identified by match to protein family HMM PF04290; trap dicarboxylate transporter subunit DctQ complement(4268752..4269267) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048057.1 CDS SeHA_C4384 NC_011083.1 4269286 4270269 R identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter subunit DctP complement(4269286..4270269) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048058.1 CDS sodA NC_011083.1 4270598 4271218 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4270598..4271218 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048059.1 CDS SeHA_C4386 NC_011083.1 4271288 4271977 D identified by match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 4271288..4271977 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048060.1 CDS SeHA_C4387 NC_011083.1 4271989 4272384 D hypothetical protein 4271989..4272384 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048061.1 CDS SeHA_C4388 NC_011083.1 4272505 4272708 D identified by glimmer; putative; hypothetical protein 4272505..4272708 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048062.1 CDS cpxA NC_011083.1 4272756 4274129 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein complement(4272756..4274129) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048063.1 CDS cpxR NC_011083.1 4274126 4274824 R response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR complement(4274126..4274824) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048064.1 CDS cpxP NC_011083.1 4274975 4275475 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4274975..4275475 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048065.1 CDS fieF NC_011083.1 4275623 4276525 D 'member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers'; ferrous iron efflux protein F 4275623..4276525 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048066.1 CDS pfkA NC_011083.1 4276710 4277672 D 'catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis'; 6-phosphofructokinase 4276710..4277672 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048067.1 CDS SeHA_C4394 NC_011083.1 4277876 4278865 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; sulfate transporter subunit 4277876..4278865 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083716.1 CDS cdh NC_011083.1 4278966 4279721 D CDP-diacylglycerol pyrophosphatase 4278966..4279721 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048068.1 CDS SeHA_C4396 NC_011083.1 4279986 4281320 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sugar (Glycoside-Pentoside-Hexuronide) transporter 4279986..4281320 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048069.1 CDS SeHA_C4397 NC_011083.1 4281331 4282290 D phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4281331..4282290 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048070.1 CDS SeHA_C4398 NC_011083.1 4282300 4283340 D identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase superfamily 4282300..4283340 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048071.1 CDS SeHA_C4399 NC_011083.1 4283403 4284125 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 4283403..4284125 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048072.1 CDS SeHA_C4400 NC_011083.1 4284223 4284387 D sodium/sulfate symporter 4284223..4284387 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048073.1 CDS SeHA_C4402 NC_011083.1 4284624 4284974 R identified by match to protein family HMM PF07883; polyketide synthesis domain-containing protein complement(4284624..4284974) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048074.1 CDS SeHA_C4403 NC_011083.1 4284988 4286538 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; autoinducer-2 (AI-2) kinase complement(4284988..4286538) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048075.1 CDS SeHA_C4404 NC_011083.1 4286668 4287627 R identified by match to protein family HMM PF04198; sugar-binding domain-containing protein complement(4286668..4287627) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048076.1 CDS SeHA_C4405 NC_011083.1 4287883 4289418 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein ego 4287883..4289418 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048077.1 CDS SeHA_C4406 NC_011083.1 4289412 4290455 D identified by match to protein family HMM PF02653; ABC transporter permease YdeY 4289412..4290455 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048078.1 CDS SeHA_C4407 NC_011083.1 4290455 4291453 D identified by match to protein family HMM PF02653; ABC transporter permease YdeZ 4290455..4291453 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048079.1 CDS SeHA_C4408 NC_011083.1 4291461 4292504 D hypothetical protein 4291461..4292504 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048080.1 CDS SeHA_C4409 NC_011083.1 4292533 4293408 D identified by match to protein family HMM PF01791; aldolase 4292533..4293408 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048081.1 CDS SeHA_C4410 NC_011083.1 4293452 4293781 D identified by match to protein family HMM PF03992; autoinducer-2 (AI-2) modifying protein LsrG 4293452..4293781 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048082.1 CDS SeHA_C4411 NC_011083.1 4293791 4294555 D identified by match to protein family HMM PF00834; epimerase 4293791..4294555 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048083.1 CDS tpiA NC_011083.1 4294647 4295414 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(4294647..4295414) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048084.1 CDS SeHA_C4413 NC_011083.1 4295527 4296123 R identified by match to protein family HMM PF07305; hypothetical protein complement(4295527..4296123) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048085.1 CDS SeHA_C4414 NC_011083.1 4296224 4296652 D identified by match to protein family HMM PF05656; hypothetical protein 4296224..4296652 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048086.1 CDS SeHA_C4415 NC_011083.1 4296758 4297504 R identified by match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin-NADP reductase complement(4296758..4297504) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048087.1 CDS glpX NC_011083.1 4297601 4298611 R 'type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese'; fructose 1,6-bisphosphatase II complement(4297601..4298611) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048088.1 CDS glpK NC_011083.1 4298723 4300231 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(4298723..4300231) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048089.1 CDS glpF NC_011083.1 4300252 4301097 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein complement(4300252..4301097) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048090.1 CDS SeHA_C4419 NC_011083.1 4301496 4301735 D identified by match to protein family HMM PF06005; hypothetical protein 4301496..4301735 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048091.1 CDS SeHA_C4420 NC_011083.1 4301820 4301960 R identified by glimmer; putative; hypothetical protein complement(4301820..4301960) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048092.1 CDS rraA NC_011083.1 4301957 4302442 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(4301957..4302442) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048093.1 CDS menA NC_011083.1 4302535 4303476 R 'catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate'; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(4302535..4303476) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048094.1 CDS hslU NC_011083.1 4303531 4304862 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(4303531..4304862) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048095.1 CDS hslV NC_011083.1 4304872 4305402 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(4304872..4305402) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048096.1 CDS ftsN NC_011083.1 4305494 4306471 R identified by match to protein family HMM PF05036; match to protein family HMM TIGR02223; cell division protein FtsN complement(4305494..4306471) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048097.1 CDS cytR NC_011083.1 4306565 4307590 R 'negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins'; DNA-binding transcriptional regulator CytR complement(4306565..4307590) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048098.1 CDS SeHA_C4427 NC_011083.1 4307745 4309943 R 'binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity'; primosome assembly protein PriA complement(4307745..4309943) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048099.1 CDS rpmE NC_011083.1 4310147 4310359 D 'RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome'; 50S ribosomal protein L31 4310147..4310359 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048100.1 CDS SeHA_C4429 NC_011083.1 4310405 4311067 R identified by match to protein family HMM PF09601; match to protein family HMM TIGR02117; hypothetical protein complement(4310405..4311067) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048101.1 CDS SeHA_C4430 NC_011083.1 4311268 4313058 R identified by match to protein family HMM PF05935; arylsulfotransferase complement(4311268..4313058) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048102.1 CDS SeHA_C4431 NC_011083.1 4312943 4313104 D identified by glimmer; putative; hypothetical protein 4312943..4313104 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048103.1 CDS SeHA_C4432 NC_011083.1 4313266 4313406 D identified by glimmer; putative; hypothetical protein 4313266..4313406 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048104.1 CDS SeHA_C4433 NC_011083.1 4313514 4313831 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(4313514..4313831) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048105.1 CDS metB NC_011083.1 4314096 4315256 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4314096..4315256 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048106.1 CDS metL NC_011083.1 4315259 4317691 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4315259..4317691 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048107.1 CDS SeHA_C4436 NC_011083.1 4317807 4318664 R identified by match to protein family HMM PF00924; match to protein family HMM PF05552; mechanosensitive ion channel protein MscS complement(4317807..4318664) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048108.1 CDS SeHA_C4437 NC_011083.1 4318667 4319665 R hypothetical protein complement(4318667..4319665) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048109.1 CDS SeHA_C4438 NC_011083.1 4319900 4321024 R hypothetical protein complement(4319900..4321024) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048110.1 CDS SeHA_C4439 NC_011083.1 4321160 4322716 D identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 4321160..4322716 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048111.1 CDS metF NC_011083.1 4322911 4323801 D 'MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor'; 5,10-methylenetetrahydrofolate reductase 4322911..4323801 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048112.1 CDS katG NC_011083.1 4323966 4326146 D identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 4323966..4326146 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048113.1 CDS SeHA_C4442 NC_011083.1 4326204 4326827 R identified by match to protein family HMM PF06940; NADH:ubiquinone oxidoreductase complement(4326204..4326827) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048114.1 CDS gldA NC_011083.1 4327086 4328189 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(4327086..4328189) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048115.1 CDS fsaB NC_011083.1 4328201 4328863 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase complement(4328201..4328863) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048116.1 CDS SeHA_C4445 NC_011083.1 4329118 4329954 R identified by match to protein family HMM PF00165; araC family transcriptional regulator complement(4329118..4329954) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048117.1 CDS SeHA_C4446 NC_011083.1 4330115 4331848 R identified by match to protein family HMM PF00884; hypothetical protein complement(4330115..4331848) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048118.1 CDS ppc NC_011083.1 4332059 4334710 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(4332059..4334710) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048119.1 CDS argE NC_011083.1 4335079 4336230 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(4335079..4336230) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048120.1 CDS argC NC_011083.1 4336319 4337323 D 'catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate'; N-acetyl-gamma-glutamyl-phosphate reductase 4336319..4337323 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048121.1 CDS argB NC_011083.1 4337334 4338107 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4337334..4338107 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048122.1 CDS argH NC_011083.1 4338224 4339600 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4338224..4339600 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048123.1 CDS oxyR NC_011083.1 4339885 4340802 D 'Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA'; DNA-binding transcriptional regulator OxyR 4339885..4340802 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048124.1 CDS sthA NC_011083.1 4340785 4342197 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(4340785..4342197) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083717.1 CDS fabR NC_011083.1 4342387 4343019 D fatty acid biosynthesis regulator 4342387..4343019 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048125.1 CDS SeHA_C4456 NC_011083.1 4343035 4343394 D identified by match to protein family HMM PF07226; hypothetical protein 4343035..4343394 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048126.1 CDS trmA NC_011083.1 4343441 4344541 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(4343441..4344541) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048127.1 CDS btuB NC_011083.1 4344915 4346759 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4344915..4346759 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048128.2 CDS murI NC_011083.1 4346704 4347555 D 'converts L-glutamate to D-glutamate, a component of peptidoglycan'; glutamate racemase 4346704..4347555 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048129.1 CDS murB NC_011083.1 4353392 4354420 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4353392..4354420 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048130.1 CDS SeHA_C4468 NC_011083.1 4354417 4355379 D 'catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon'; biotin--protein ligase 4354417..4355379 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048131.1 CDS coaA NC_011083.1 4355414 4356364 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(4355414..4356364) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048132.1 CDS SeHA_C4472 NC_011083.1 4356949 4357065 D hypothetical protein 4356949..4357065 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048133.1 CDS tuf1 NC_011083.1 4357323 4358507 D 'EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu'; elongation factor Tu 4357323..4358507 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048134.1 CDS secE NC_011083.1 4358737 4359120 D 'forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force'; preprotein translocase subunit SecE 4358737..4359120 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048135.1 CDS nusG NC_011083.1 4359122 4359667 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4359122..4359667 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048136.1 CDS rplK NC_011083.1 4359825 4360253 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4359825..4360253 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048137.1 CDS rplA NC_011083.1 4360257 4360961 D 'in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA'; 50S ribosomal protein L1 4360257..4360961 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048138.1 CDS rplJ NC_011083.1 4361381 4361878 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4361381..4361878 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048139.1 CDS rplL NC_011083.1 4361945 4362310 D 'present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors'; 50S ribosomal protein L7/L12 4361945..4362310 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048140.1 CDS rpoB NC_011083.1 4362628 4366656 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4362628..4366656 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048141.1 CDS rpoC NC_011083.1 4366733 4370956 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4366733..4370956 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048142.1 CDS SeHA_C4485 NC_011083.1 4371043 4371324 D hypothetical protein 4371043..4371324 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048143.1 CDS SeHA_C4488 NC_011083.1 4372125 4372340 D hypothetical protein 4372125..4372340 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048144.1 CDS thiH NC_011083.1 4372422 4373555 R 'in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center'; thiamine biosynthesis protein ThiH complement(4372422..4373555) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048145.2 CDS thiG NC_011083.1 4373552 4374322 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(4373552..4374322) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048146.1 CDS thiS NC_011083.1 4374324 4374524 R 'with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate'; sulfur carrier protein ThiS complement(4374324..4374524) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048147.1 CDS SeHA_C4492 NC_011083.1 4374505 4375263 R identified by match to protein family HMM PF00899; match to protein family HMM PF05237; adenylyltransferase ThiF complement(4374505..4375263) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048148.1 CDS thiE NC_011083.1 4375256 4375891 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase complement(4375256..4375891) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048149.1 CDS thiC NC_011083.1 4375891 4377786 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(4375891..4377786) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048150.1 CDS SeHA_C4496 NC_011083.1 4378150 4378638 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(4378150..4378638) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048151.1 CDS nudC NC_011083.1 4378731 4379504 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4378731..4379504 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048152.1 CDS hemE NC_011083.1 4379545 4380609 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4379545..4380609 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048153.1 CDS nfi NC_011083.1 4380619 4381290 D 'Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures'; endonuclease V 4380619..4381290 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048154.1 CDS SeHA_C4500 NC_011083.1 4381332 4381922 D identified by match to protein family HMM PF04222; hypothetical protein 4381332..4381922 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048155.1 CDS hupA NC_011083.1 4382109 4382381 D histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4382109..4382381 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048156.1 CDS SeHA_C4502 NC_011083.1 4382393 4383085 D identified by match to protein family HMM PF07356; hypothetical protein 4382393..4383085 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048157.1 CDS zraP NC_011083.1 4383127 4383582 R zinc resistance protein complement(4383127..4383582) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048158.1 CDS SeHA_C4504 NC_011083.1 4383836 4385233 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein ZraS 4383836..4385233 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048159.1 CDS SeHA_C4505 NC_011083.1 4385239 4386564 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4385239..4386564 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048160.1 CDS purD NC_011083.1 4386561 4387850 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(4386561..4387850) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048161.1 CDS purH NC_011083.1 4387866 4389455 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(4387866..4389455) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048162.1 CDS SeHA_C4511 NC_011083.1 4393811 4393930 D hypothetical protein 4393811..4393930 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048163.1 CDS SeHA_C4513 NC_011083.1 4395035 4395193 R identified by glimmer; putative; hypothetical protein complement(4395035..4395193) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048164.1 CDS SeHA_C4514 NC_011083.1 4395631 4396068 R identified by match to protein family HMM PF00583; hypothetical protein complement(4395631..4396068) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048165.1 CDS metA NC_011083.1 4396225 4397154 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4396225..4397154 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048166.1 CDS aceB NC_011083.1 4397420 4399024 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4397420..4399024 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048167.1 CDS aceA NC_011083.1 4399056 4400360 D identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346; isocitrate lyase 4399056..4400360 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048168.1 CDS SeHA_C4518 NC_011083.1 4400364 4400486 D hypothetical protein 4400364..4400486 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048169.1 CDS aceK NC_011083.1 4400462 4402213 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 4400462..4402213 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048170.1 CDS SeHA_C4520 NC_011083.1 4402177 4402611 R identified by match to protein family HMM PF04266; hypothetical protein complement(4402177..4402611) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048171.1 CDS SeHA_C4521 NC_011083.1 4402595 4403419 R 'regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase'; IclR family transcriptional regulator complement(4402595..4403419) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048172.1 CDS SeHA_C4522 NC_011083.1 4403543 4403674 R identified by glimmer; putative; hypothetical protein complement(4403543..4403674) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048173.1 CDS metH NC_011083.1 4403723 4407406 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4403723..4407406 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048174.1 CDS SeHA_C4524 NC_011083.1 4407673 4409304 D identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; match to protein family HMM TIGR01013; sodium-dependent inorganic phosphate 4407673..4409304 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048175.1 CDS SeHA_C4525 NC_011083.1 4409380 4410069 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(4409380..4410069) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048176.1 CDS SeHA_C4526 NC_011083.1 4410146 4410262 R identified by glimmer; putative; hypothetical protein complement(4410146..4410262) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048177.1 CDS SeHA_C4527 NC_011083.1 4410277 4410816 D nucleoprotein/polynucleotide-associated enzyme 4410277..4410816 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048178.1 CDS SeHA_C4528 NC_011083.1 4410863 4411732 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4410863..4411732 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048179.1 CDS SeHA_C4529 NC_011083.1 4411729 4412001 R hypothetical protein complement(4411729..4412001) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048180.1 CDS SeHA_C4530 NC_011083.1 4412099 4413040 R identified by match to protein family HMM PF01758; bile acid:sodium symporter complement(4412099..4413040) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048181.1 CDS SeHA_C4531 NC_011083.1 4413158 4413313 D hypothetical protein 4413158..4413313 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048182.1 CDS SeHA_C4533 NC_011083.1 4414609 4415085 R serine acetyltransferase complement(4414609..4415085) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048183.1 CDS SeHA_C4534 NC_011083.1 4415406 4415861 R hypothetical protein complement(4415406..4415861) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048184.1 CDS SeHA_C4535 NC_011083.1 4415858 4416421 R hypothetical protein complement(4415858..4416421) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048185.1 CDS SeHA_C4536 NC_011083.1 4416479 4418137 R identified by match to protein family HMM PF03406; tail fiber domain-containing protein complement(4416479..4418137) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048186.1 CDS SeHA_C4537 NC_011083.1 4418140 4418772 R identified by match to protein family HMM PF09684; match to protein family HMM TIGR01634; phage tail protein complement(4418140..4418772) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048187.1 CDS SeHA_C4538 NC_011083.1 4418765 4419880 R identified by match to protein family HMM PF04865; hypothetical protein complement(4418765..4419880) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048188.1 CDS SeHA_C4539 NC_011083.1 4419871 4420230 R identified by match to protein family HMM PF04965; phage baseplate assembly protein W complement(4419871..4420230) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048189.1 CDS SeHA_C4540 NC_011083.1 4420291 4420413 D identified by glimmer; putative; hypothetical protein 4420291..4420413 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048190.1 CDS SeHA_C4541 NC_011083.1 4420394 4421932 R hypothetical protein complement(4420394..4421932) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048191.1 CDS SeHA_C4542 NC_011083.1 4421941 4422870 R identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase complement(4421941..4422870) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048192.1 CDS SeHA_C4543 NC_011083.1 4422867 4423229 R identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase complement(4422867..4423229) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048193.1 CDS SeHA_C4544 NC_011083.1 4423423 4423548 R identified by glimmer; putative; hypothetical protein complement(4423423..4423548) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048194.1 CDS SeHA_C4545 NC_011083.1 4423557 4424279 R identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644; tail spike complement(4423557..4424279) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048195.1 CDS SeHA_C4546 NC_011083.1 4424289 4425332 R identified by match to protein family HMM PF05954; gp47 complement(4424289..4425332) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048196.1 CDS SeHA_C4547 NC_011083.1 4425320 4425529 R identified by match to protein family HMM PF05489; phage Tail Protein X complement(4425320..4425529) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048197.1 CDS SeHA_C4548 NC_011083.1 4425529 4426482 R identified by match to protein family HMM PF06995; methyl-accepting chemotaxis protein complement(4425529..4426482) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048198.1 CDS SeHA_C4549 NC_011083.1 4426482 4428836 R identified by match to protein family HMM TIGR01760; phage tail protein complement(4426482..4428836) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048199.1 CDS SeHA_C4550 NC_011083.1 4428933 4429061 R hypothetical protein complement(4428933..4429061) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048200.1 CDS SeHA_C4551 NC_011083.1 4429021 4429338 R hypothetical protein complement(4429021..4429338) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048201.1 CDS SeHA_C4552 NC_011083.1 4429390 4429914 R identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611; phage major tail tube protein complement(4429390..4429914) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048202.1 CDS SeHA_C4553 NC_011083.1 4429914 4431341 R identified by match to protein family HMM PF04984; phage tail sheath protein complement(4429914..4431341) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048203.1 CDS SeHA_C4554 NC_011083.1 4431331 4431528 R gp12 complement(4431331..4431528) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048204.1 CDS SeHA_C4555 NC_011083.1 4431525 4431980 R identified by match to protein family HMM PF09646; hypothetical protein complement(4431525..4431980) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048205.1 CDS SeHA_C4556 NC_011083.1 4432140 4432454 R gp54 complement(4432140..4432454) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048206.1 CDS SeHA_C4557 NC_011083.1 4432467 4433072 R identified by match to protein family HMM PF01464; endolysin complement(4432467..4433072) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048207.1 CDS SeHA_C4558 NC_011083.1 4433075 4433362 R gp51 complement(4433075..4433362) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048208.1 CDS SeHA_C4559 NC_011083.1 4433589 4433720 D identified by glimmer; putative; hypothetical protein 4433589..4433720 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048209.1 CDS SeHA_C4560 NC_011083.1 4433844 4433984 D identified by glimmer; putative; hypothetical protein 4433844..4433984 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048210.1 CDS SeHA_C4561 NC_011083.1 4433938 4434285 D identified by match to protein family HMM PF08765; DNA-binding protein RdgB 4433938..4434285 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048211.1 CDS lysC NC_011083.1 4434418 4435767 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III complement(4434418..4435767) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048212.1 CDS pgi NC_011083.1 4436112 4437761 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4436112..4437761 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048213.1 CDS SeHA_C4564 NC_011083.1 4438202 4438447 D hypothetical protein 4438202..4438447 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048214.1 CDS SeHA_C4565 NC_011083.1 4438511 4439149 D hypothetical protein 4438511..4439149 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048215.1 CDS SeHA_C4566 NC_011083.1 4439146 4439883 D identified by match to protein family HMM PF06251; hypothetical protein 4439146..4439883 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048216.1 CDS SeHA_C4567 NC_011083.1 4439883 4441979 D identified by match to protein family HMM PF06082; hypothetical protein 4439883..4441979 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048217.1 CDS SeHA_C4568 NC_011083.1 4442122 4442532 D identified by match to protein family HMM PF06146; phosphate-starvation-inducible protein PsiE 4442122..4442532 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048218.1 CDS malG NC_011083.1 4442698 4443588 R with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease complement(4442698..4443588) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048219.1 CDS malF NC_011083.1 4443603 4445147 R with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein complement(4443603..4445147) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048220.1 CDS malE NC_011083.1 4445279 4446469 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein complement(4445279..4446469) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048221.1 CDS malK NC_011083.1 4446831 4447940 D with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4446831..4447940 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048222.1 CDS lamB NC_011083.1 4448029 4449387 D porin involved in the transport of maltose and maltodextrins; maltoporin 4448029..4449387 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048223.1 CDS malM NC_011083.1 4449551 4450468 D identified by match to protein family HMM PF07148; maltose regulon periplasmic protein 4449551..4450468 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048224.1 CDS ubiC NC_011083.1 4450649 4451146 D catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4450649..4451146 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048225.1 CDS ubiA NC_011083.1 4451160 4452032 D 'catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway'; 4-hydroxybenzoate octaprenyltransferase 4451160..4452032 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048226.1 CDS SeHA_C4577 NC_011083.1 4452131 4454551 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4452131..4454551) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048227.1 CDS dgkA NC_011083.1 4454722 4455090 D identified by match to protein family HMM PF01219; diacylglycerol kinase 4454722..4455090 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048228.1 CDS lexA NC_011083.1 4455199 4455807 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4455199..4455807 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048229.1 CDS SeHA_C4580 NC_011083.1 4455986 4457311 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; DNA-damage-inducible SOS response protein 4455986..4457311 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048230.1 CDS SeHA_C4581 NC_011083.1 4457293 4457421 D hypothetical protein 4457293..4457421 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048231.1 CDS SeHA_C4582 NC_011083.1 4457440 4457652 D unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4457440..4457652 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048232.1 CDS SeHA_C4583 NC_011083.1 4457751 4458266 R 'Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB'; zinc uptake transcriptional repressor complement(4457751..4458266) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048233.1 CDS SeHA_C4584 NC_011083.1 4458513 4459823 D conjugative transfer protein 4458513..4459823 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048234.1 CDS SeHA_C4585 NC_011083.1 4459911 4460909 D identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 4459911..4460909 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048235.1 CDS SeHA_C4587 NC_011083.1 4461494 4462477 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; quinone oxidoreductase, NADPH-dependent complement(4461494..4462477) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048236.1 CDS dnaB NC_011083.1 4462542 4463957 D unwinds double stranded DNA; replicative DNA helicase 4462542..4463957 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048237.1 CDS alr NC_011083.1 4463989 4465068 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4463989..4465068 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048238.1 CDS SeHA_C4590 NC_011083.1 4465039 4465170 R identified by glimmer; putative; hypothetical protein complement(4465039..4465170) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048239.1 CDS SeHA_C4591 NC_011083.1 4465254 4466447 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4465254..4466447 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048240.1 CDS aphA NC_011083.1 4466634 4467347 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4466634..4467347 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048241.1 CDS SeHA_C4593 NC_011083.1 4467476 4467892 D identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 4467476..4467892 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048242.1 CDS SeHA_C4594 NC_011083.1 4467895 4468251 D identified by match to protein family HMM PF04237; hypothetical protein 4467895..4468251 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048243.1 CDS SeHA_C4595 NC_011083.1 4468252 4468590 R hypothetical protein complement(4468252..4468590) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048244.1 CDS SeHA_C4596 NC_011083.1 4468577 4469020 R hypothetical protein complement(4468577..4469020) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048245.1 CDS uvrA NC_011083.1 4469164 4471989 R 'The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate'; excinuclease ABC subunit A complement(4469164..4471989) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048246.1 CDS ssb2 NC_011083.1 4472237 4472767 D binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4472237..4472767 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048247.1 CDS SeHA_C4599 NC_011083.1 4472915 4473040 D identified by glimmer; putative; hypothetical protein 4472915..4473040 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048248.1 CDS SeHA_C4600 NC_011083.1 4473158 4473298 D identified by glimmer; putative; hypothetical protein 4473158..4473298 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048249.1 CDS SeHA_C4601 NC_011083.1 4473808 4474440 D hypothetical protein 4473808..4474440 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048250.1 CDS SeHA_C4602 NC_011083.1 4474437 4475825 D hypothetical protein 4474437..4475825 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048251.1 CDS SeHA_C4603 NC_011083.1 4476208 4477134 D identified by match to protein family HMM PF02321; ABC exporter outer membrane protein 4476208..4477134 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048252.1 CDS SeHA_C4604 NC_011083.1 4477158 4478408 D hypothetical protein 4477158..4478408 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048253.1 CDS SeHA_C4605 NC_011083.1 4478425 4495110 D Ig domain family protein 4478425..4495110 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048254.1 CDS SeHA_C4606 NC_011083.1 4495150 4497216 D identified by match to protein family HMM PF00005; type-1 secretion protein 4495150..4497216 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_007419100.1 CDS SeHA_C4607 NC_011083.1 4497494 4497775 R hypothetical protein complement(4497494..4497775) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048255.1 CDS SeHA_C4608 NC_011083.1 4498337 4499938 D identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 4498337..4499938 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048256.1 CDS SeHA_C4609 NC_011083.1 4499926 4500249 R regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS complement(4499926..4500249) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048257.1 CDS soxR NC_011083.1 4500336 4500794 D identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR01950; redox-sensitive transcriptional activator SoxR 4500336..4500794 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048258.1 CDS SeHA_C4611 NC_011083.1 4501087 4501755 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase, N- domain 4501087..4501755 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048259.1 CDS SeHA_C4612 NC_011083.1 4502102 4503451 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; inorganic anion transporter, sulfate permease (SulP) family 4502102..4503451 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048260.1 CDS SeHA_C4613 NC_011083.1 4503556 4505247 D identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831; Na+/H+ antiporter 4503556..4505247 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048261.1 CDS SeHA_C4614 NC_011083.1 4505342 4506229 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family regulatory protein complement(4505342..4506229) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048262.2 CDS SeHA_C4615 NC_011083.1 4506228 4506743 D identified by match to protein family HMM PF03788; LrgA family protein 4506228..4506743 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048263.1 CDS SeHA_C4616 NC_011083.1 4506736 4507425 D identified by match to protein family HMM PF04172; LrgB family protein 4506736..4507425 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048264.1 CDS actP NC_011083.1 4507464 4509113 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(4507464..4509113) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048265.1 CDS SeHA_C4618 NC_011083.1 4509110 4509424 R identified by match to protein family HMM PF04341; hypothetical protein complement(4509110..4509424) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048266.1 CDS acsA NC_011083.1 4509664 4511622 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(4509664..4511622) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048267.1 CDS nrfA NC_011083.1 4512054 4513490 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4512054..4513490 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048268.1 CDS nrfB NC_011083.1 4513602 4514168 D 'part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia'; cytochrome c nitrite reductase pentaheme subunit 4513602..4514168 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048269.1 CDS nrfC NC_011083.1 4514165 4514836 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; match to protein family HMM TIGR03149; cytochrome c nitrite reductase Fe-S protein 4514165..4514836 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048270.1 CDS nrfD NC_011083.1 4514833 4515789 D identified by match to protein family HMM PF03916; match to protein family HMM TIGR03148; cytochrome c nitrite reductase NrfD subunit 4514833..4515789 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048271.1 CDS ccmF NC_011083.1 4515782 4517518 D with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; heme lyase subunit NrfE 4515782..4517518 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048272.1 CDS SeHA_C4625 NC_011083.1 4517511 4518020 D identified by match to protein family HMM PF03918; match to protein family HMM TIGR03147; formate-dependent nitrite reductase complex subunit NrfF 4517511..4518020 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048273.1 CDS SeHA_C4626 NC_011083.1 4518017 4518637 D identified by match to protein family HMM PF07719; formate-dependent nitrite reductase complex subunit NrfG 4518017..4518637 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048274.1 CDS SeHA_C4627 NC_011083.1 4518777 4518905 R hypothetical protein complement(4518777..4518905) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048275.1 CDS gltP NC_011083.1 4518982 4520292 D 'carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system'; glutamate/aspartate:proton symporter 4518982..4520292 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048276.1 CDS SeHA_C4629 NC_011083.1 4520450 4521139 R identified by match to protein family HMM PF08238; hypothetical protein complement(4520450..4521139) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048277.1 CDS SeHA_C4632 NC_011083.1 4523818 4524726 R identified by match to protein family HMM PF05118; membrane-bound beta-hydroxylase complement(4523818..4524726) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048278.1 CDS SeHA_C4633 NC_011083.1 4524984 4525418 R PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase complement(4524984..4525418) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048279.1 CDS SeHA_C4634 NC_011083.1 4525570 4526013 R identified by match to protein family HMM PF00903; match to protein family HMM PF06983; hypothetical protein complement(4525570..4526013) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048280.1 CDS phnA NC_011083.1 4526133 4526468 R identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; hypothetical protein complement(4526133..4526468) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048281.1 CDS SeHA_C4636 NC_011083.1 4526936 4528438 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM PF08946; match to protein family HMM TIGR00883; proline/glycine betaine transporter 4526936..4528438 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048282.1 CDS SeHA_C4637 NC_011083.1 4528605 4529684 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein BasS/PmrB complement(4528605..4529684) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048283.1 CDS SeHA_C4638 NC_011083.1 4529685 4530353 R response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR complement(4529685..4530353) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048284.1 CDS SeHA_C4639 NC_011083.1 4530350 4531993 R with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; cell division protein complement(4530350..4531993) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048285.1 CDS SeHA_C4640 NC_011083.1 4532127 4533464 R identified by match to protein family HMM PF00324; arginine:agmatin antiporter complement(4532127..4533464) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048286.1 CDS SeHA_C4641 NC_011083.1 4533604 4534335 R identified by match to protein family HMM PF00165; porin thermoregulatory protein EnvY complement(4533604..4534335) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048287.1 CDS adiA NC_011083.1 4534663 4536933 R identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; biodegradative arginine decarboxylase complement(4534663..4536933) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048288.1 CDS SeHA_C4643 NC_011083.1 4537163 4538053 R identified by match to protein family HMM PF00165; DNA-binding transcriptional regulator MelR complement(4537163..4538053) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048289.1 CDS SeHA_C4644 NC_011083.1 4538364 4539719 D identified by match to protein family HMM PF02056; alpha-galactosidase 4538364..4539719 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048290.1 CDS SeHA_C4645 NC_011083.1 4539782 4541212 D identified by match to protein family HMM TIGR00792; melibiose:sodium symporter 4539782..4541212 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048291.1 CDS SeHA_C4646 NC_011083.1 4541310 4542956 R identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic complement(4541310..4542956) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048292.1 CDS SeHA_C4647 NC_011083.1 4543052 4544392 R 'functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters'; anaerobic C4-dicarboxylate transporter complement(4543052..4544392) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048293.1 CDS SeHA_C4648 NC_011083.1 4544539 4544712 R hypothetical protein complement(4544539..4544712) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048294.1 CDS SeHA_C4649 NC_011083.1 4545122 4545841 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR complement(4545122..4545841) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048295.1 CDS SeHA_C4650 NC_011083.1 4545838 4547469 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS complement(4545838..4547469) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048296.1 CDS SeHA_C4651 NC_011083.1 4547825 4550254 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 4547825..4550254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048297.1 CDS dmsB NC_011083.1 4550268 4550894 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B 4550268..4550894 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048298.1 CDS dmsC NC_011083.1 4550887 4551660 D identified by match to protein family HMM PF04976; dmso reductase anchor subunit 4550887..4551660 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_007419101.1 CDS SeHA_C4654 NC_011083.1 4551676 4552329 D oxidoreductase 4551676..4552329 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048300.1 CDS SeHA_C4658 NC_011083.1 4554080 4554985 D identified by match to protein family HMM PF06977; hypothetical protein 4554080..4554985 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048302.1 CDS SeHA_C4660 NC_011083.1 4555821 4556093 R identified by match to protein family HMM PF00196; GerE family regulatory protein complement(4555821..4556093) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048303.1 CDS SeHA_C4661 NC_011083.1 4556105 4556980 R identified by match to protein family HMM PF00165; AraC family regulatory protein complement(4556105..4556980) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048304.1 CDS SeHA_C4662 NC_011083.1 4557246 4557389 R hypothetical protein complement(4557246..4557389) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048305.1 CDS SeHA_C4665 NC_011083.1 4558650 4558850 D hypothetical protein 4558650..4558850 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048306.1 CDS SeHA_C4666 NC_011083.1 4558804 4559805 D identified by match to protein family HMM PF06717; hypothetical protein 4558804..4559805 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048307.1 CDS SeHA_C4670 NC_011083.1 4561082 4561834 R identified by match to protein family HMM PF01569; acid phosphatase complement(4561082..4561834) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048308.1 CDS SeHA_C4671 NC_011083.1 4561877 4562011 R hypothetical protein complement(4561877..4562011) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048309.1 CDS SeHA_C4672 NC_011083.1 4563134 4563397 R identified by match to protein family HMM PF03693; match to protein family HMM TIGR02606; addiction module antidote protein complement(4563134..4563397) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048310.1 CDS SeHA_C4673 NC_011083.1 4563469 4564338 R hypothetical protein complement(4563469..4564338) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048311.1 CDS SeHA_C4674 NC_011083.1 4564420 4564617 R identified by match to protein family HMM PF06117; hypothetical protein complement(4564420..4564617) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048312.1 CDS SeHA_C4675 NC_011083.1 4564629 4565117 R hypothetical protein complement(4564629..4565117) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048313.1 CDS SeHA_C4676 NC_011083.1 4565114 4565491 R identified by match to protein family HMM PF06755; hypothetical protein complement(4565114..4565491) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048314.1 CDS SeHA_C4677 NC_011083.1 4565581 4565874 R identified by match to protein family HMM PF06154; hypothetical protein complement(4565581..4565874) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048315.1 CDS SeHA_C4678 NC_011083.1 4565999 4566646 R hypothetical protein complement(4565999..4566646) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048316.1 CDS SeHA_C4679 NC_011083.1 4566665 4566886 R identified by match to protein family HMM PF06174; hypothetical protein complement(4566665..4566886) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048317.1 CDS SeHA_C4680 NC_011083.1 4566973 4567449 R identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; DNA repair protein, RadC family complement(4566973..4567449) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048318.1 CDS SeHA_C4681 NC_011083.1 4567464 4567943 R identified by match to protein family HMM PF03230; antirestriction protein complement(4567464..4567943) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048319.1 CDS SeHA_C4682 NC_011083.1 4568209 4569027 R identified by match to protein family HMM PF06067; hypothetical protein complement(4568209..4569027) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048320.1 CDS SeHA_C4683 NC_011083.1 4569117 4569293 R hypothetical protein complement(4569117..4569293) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048321.1 CDS SeHA_C4685 NC_011083.1 4570152 4571036 R identified by match to protein family HMM PF01926; GTPase complement(4570152..4571036) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048322.1 CDS SeHA_C4686 NC_011083.1 4571142 4572092 D hypothetical protein 4571142..4572092 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048323.1 CDS SeHA_C4687 NC_011083.1 4572089 4572877 R hypothetical protein complement(4572089..4572877) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048324.1 CDS SeHA_C4688 NC_011083.1 4573303 4573437 D identified by glimmer; putative; hypothetical protein 4573303..4573437 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048325.1 CDS SeHA_C4689 NC_011083.1 4574603 4575334 D hypothetical protein 4574603..4575334 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048326.1 CDS SeHA_C4690 NC_011083.1 4575661 4577265 D hypothetical protein 4575661..4577265 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048327.1 CDS SeHA_C4691 NC_011083.1 4578804 4579370 D hypothetical protein 4578804..4579370 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048328.1 CDS SeHA_C4692 NC_011083.1 4579617 4580189 D identified by glimmer; putative; hypothetical protein 4579617..4580189 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048329.1 CDS SeHA_C4693 NC_011083.1 4580321 4580494 D identified by match to protein family HMM PF05930; AlpA family transcriptional regulator 4580321..4580494 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048330.1 CDS SeHA_C4694 NC_011083.1 4580466 4580675 D hypothetical protein 4580466..4580675 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048331.1 CDS SeHA_C4695 NC_011083.1 4580787 4580963 R hypothetical protein complement(4580787..4580963) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048332.1 CDS SeHA_C4696 NC_011083.1 4581111 4581311 D identified by glimmer; putative; hypothetical protein 4581111..4581311 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048333.1 CDS SeHA_C4697 NC_011083.1 4581330 4581674 R ProQ family protein complement(4581330..4581674) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048334.1 CDS SeHA_C4698 NC_011083.1 4581671 4581844 R identified by glimmer; putative; hypothetical protein complement(4581671..4581844) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048335.1 CDS SeHA_C4699 NC_011083.1 4582253 4582414 R identified by glimmer; putative; hypothetical protein complement(4582253..4582414) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048336.1 CDS SeHA_C4700 NC_011083.1 4582567 4583001 D identified by match to protein family HMM PF00816; DNA-binding protein 4582567..4583001 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048337.1 CDS SeHA_C4701 NC_011083.1 4583106 4583225 R identified by glimmer; putative; hypothetical protein complement(4583106..4583225) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048338.1 CDS SeHA_C4702 NC_011083.1 4583418 4583987 R hypothetical protein complement(4583418..4583987) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048339.1 CDS SeHA_C4703 NC_011083.1 4584087 4585319 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353; deoxyguanosinetriphosphate triphosphohydrolase complement(4584087..4585319) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048340.1 CDS SeHA_C4704 NC_011083.1 4585470 4586336 R identified by match to protein family HMM PF00665; ISEc16, orfB complement(4585470..4586336) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048341.1 CDS thyA NC_011083.1 4586799 4587779 D identified by match to protein family HMM PF00303; thymidylate synthase 4586799..4587779 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048342.1 CDS SeHA_C4707 NC_011083.1 4587926 4588906 D identified by match to protein family HMM PF01609; IS5 transposase 4587926..4588906 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048343.1 CDS SeHA_C4708 NC_011083.1 4589152 4589919 D hypothetical protein 4589152..4589919 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048344.1 CDS SeHA_C4709 NC_011083.1 4589922 4591004 R identified by match to protein family HMM PF01381; match to protein family HMM PF06114; XRE family plasmid maintenance system antidote protein complement(4589922..4591004) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048345.1 CDS SeHA_C4710 NC_011083.1 4591471 4591734 D hypothetical protein 4591471..4591734 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048346.1 CDS SeHA_C4712 NC_011083.1 4593159 4596572 D identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; type III restriction enzyme, res subunit 4593159..4596572 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048347.1 CDS SeHA_C4713 NC_011083.1 4596636 4598270 D identified by match to protein family HMM PF02384; N-6 DNA methylase 4596636..4598270 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048348.1 CDS SeHA_C4714 NC_011083.1 4598267 4599409 D identified by match to protein family HMM PF01420; restriction modification system DNA specificity domain 4598267..4599409 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048349.1 CDS SeHA_C4715 NC_011083.1 4599418 4600185 D hypothetical protein 4599418..4600185 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048350.1 CDS SeHA_C4716 NC_011083.1 4600289 4601497 D identified by match to protein family HMM PF01609; transposase (IS4 family) 4600289..4601497 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048351.1 CDS gltS NC_011083.1 4601863 4603068 R identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter complement(4601863..4603068) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048352.1 CDS SeHA_C4719 NC_011083.1 4603224 4603349 R identified by glimmer; putative; hypothetical protein complement(4603224..4603349) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048353.1 CDS SeHA_C4720 NC_011083.1 4603659 4603793 D hypothetical protein 4603659..4603793 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048354.1 CDS SeHA_C4721 NC_011083.1 4603869 4604237 D identified by match to protein family HMM PF01527; transposase 4603869..4604237 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048355.1 CDS SeHA_C4723 NC_011083.1 4605571 4606257 D arsR family transcriptional regulator 4605571..4606257 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048356.1 CDS SeHA_C4724 NC_011083.1 4606940 4608145 D identified by match to protein family HMM PF07690; tetracycline resistance protein, class B 4606940..4608145 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048357.1 CDS SeHA_C4725 NC_011083.1 4608258 4608512 R transposon Tn10 TetC protein complement(4608258..4608512) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048358.1 CDS SeHA_C4726 NC_011083.1 4608734 4609714 R identified by match to protein family HMM PF01609; IS5 transposase complement(4608734..4609714) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048359.1 CDS SeHA_C4728 NC_011083.1 4610296 4611033 D heat resistant agglutinin 1 4610296..4611033 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048360.1 CDS SeHA_C4729 NC_011083.1 4611453 4612349 D regulatory protein DeoR 4611453..4612349 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048361.1 CDS SeHA_C4730 NC_011083.1 4612398 4613477 D hypothetical protein 4612398..4613477 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048362.1 CDS SeHA_C4731 NC_011083.1 4613524 4615095 D hypothetical protein 4613524..4615095 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048363.1 CDS SeHA_C4732 NC_011083.1 4615221 4615358 D hypothetical protein 4615221..4615358 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048364.1 CDS SeHA_C4733 NC_011083.1 4615358 4615477 D identified by glimmer; putative; hypothetical protein 4615358..4615477 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048365.1 CDS SeHA_C4734 NC_011083.1 4615498 4615695 D identified by glimmer; putative; hypothetical protein 4615498..4615695 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048366.1 CDS SeHA_C4735 NC_011083.1 4615721 4615840 D identified by glimmer; putative; hypothetical protein 4615721..4615840 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048367.1 CDS SeHA_C4736 NC_011083.1 4615887 4617434 D identified by match to protein family HMM PF00884; hypothetical protein 4615887..4617434 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048368.1 CDS SeHA_C4737 NC_011083.1 4617578 4618621 R ShiA-like protein complement(4617578..4618621) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048369.1 CDS SeHA_C4738 NC_011083.1 4619069 4620259 R identified by match to protein family HMM PF00589; integrase complement(4619069..4620259) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048370.1 CDS SeHA_C4740 NC_011083.1 4620627 4621202 R identified by match to protein family HMM PF00440; transcriptional regulator complement(4620627..4621202) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048371.1 CDS dipZ NC_011083.1 4621239 4622942 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(4621239..4622942) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048372.1 CDS cutA NC_011083.1 4622918 4623265 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA complement(4622918..4623265) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048373.1 CDS dcuA NC_011083.1 4623386 4624687 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(4623386..4624687) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048374.1 CDS aspA NC_011083.1 4624802 4626238 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(4624802..4626238) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048375.1 CDS fxsA NC_011083.1 4626579 4627055 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4626579..4627055 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048376.1 CDS SeHA_C4746 NC_011083.1 4627114 4628376 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH complement(4627114..4628376) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048377.1 CDS groES NC_011083.1 4628631 4628924 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4628631..4628924 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048378.1 CDS groEL NC_011083.1 4628968 4630614 D '60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth'; chaperonin GroEL 4628968..4630614 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048379.1 CDS SeHA_C4749 NC_011083.1 4630849 4631202 D hypothetical protein 4630849..4631202 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048380.1 CDS SeHA_C4750 NC_011083.1 4631250 4632107 R hypothetical protein complement(4631250..4632107) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048381.1 CDS SeHA_C4751 NC_011083.1 4632389 4633417 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; KamA family protein complement(4632389..4633417) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048382.1 CDS efp NC_011083.1 4633458 4634024 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4633458..4634024 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048383.1 CDS SeHA_C4753 NC_011083.1 4634046 4634219 D identified by match to protein family HMM PF08085; entericidin A 4634046..4634219 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083718.1 CDS SeHA_C4754 NC_011083.1 4634504 4635091 R transcriptional regulator complement(4634504..4635091) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083719.1 CDS SeHA_C4756 NC_011083.1 4635348 4635665 D quaternary ammonium compound-resistance protein SugE 4635348..4635665 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048385.1 CDS SeHA_C4757 NC_011083.1 4635682 4636215 R lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc complement(4635682..4636215) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048386.1 CDS SeHA_C4758 NC_011083.1 4636327 4636686 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(4636327..4636686) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048387.1 CDS frdC NC_011083.1 4636697 4637092 R 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase subunit C complement(4636697..4637092) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048388.1 CDS frdB NC_011083.1 4637103 4637837 R 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase iron-sulfur subunit complement(4637103..4637837) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048389.1 CDS frdA NC_011083.1 4637830 4639620 R 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase flavoprotein subunit complement(4637830..4639620) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048390.1 CDS SeHA_C4762 NC_011083.1 4639943 4640920 D lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4639943..4640920 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048391.1 CDS SeHA_C4763 NC_011083.1 4641146 4642648 D identified by match to protein family HMM PF00324; inner membrane transporter YjeM 4641146..4642648 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048392.1 CDS SeHA_C4764 NC_011083.1 4642905 4643033 D hypothetical protein 4642905..4643033 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048393.1 CDS SeHA_C4765 NC_011083.1 4643170 4646496 R identified by match to protein family HMM PF00924; hypothetical protein complement(4643170..4646496) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048394.1 CDS psd NC_011083.1 4646515 4647483 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(4646515..4647483) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048395.1 CDS rsgA NC_011083.1 4647575 4648627 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(4647575..4648627) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048396.1 CDS SeHA_C4768 NC_011083.1 4648734 4649279 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4648734..4649279 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048397.1 CDS SeHA_C4769 NC_011083.1 4649341 4650081 R identified by match to protein family HMM PF00497; arginine-binding periplasmic protein 2 complement(4649341..4650081) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048398.1 CDS SeHA_C4774 NC_011083.1 4651166 4652320 R identified by match to protein family HMM PF08331; match to protein family HMM TIGR00276; iron-sulfur cluster binding protein complement(4651166..4652320) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048399.1 CDS SeHA_C4773 NC_011083.1 4652307 4653851 D identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein 4652307..4653851 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048400.1 CDS SeHA_C4775 NC_011083.1 4653826 4654284 D possibly involved in cell wall synthesis; ATPase 4653826..4654284 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048401.1 CDS SeHA_C4776 NC_011083.1 4654301 4655623 D identified by match to protein family HMM PF01520; N-acetylmuramoyl-l-alanine amidase II 4654301..4655623 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048402.1 CDS mutL NC_011083.1 4655633 4657489 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4655633..4657489 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048403.1 CDS miaA NC_011083.1 4657482 4658432 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4657482..4658432 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048404.1 CDS hfq NC_011083.1 4658515 4658823 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4658515..4658823 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048405.1 CDS hflX NC_011083.1 4658895 4660175 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4658895..4660175 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048406.1 CDS hflK NC_011083.1 4660390 4661649 D with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4660390..4661649 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048407.1 CDS hflC NC_011083.1 4661652 4662656 D with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4661652..4662656 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048408.1 CDS SeHA_C4783 NC_011083.1 4662735 4662932 D hypothetical protein 4662735..4662932 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048409.1 CDS purA NC_011083.1 4663035 4664333 D 'catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis'; adenylosuccinate synthetase 4663035..4664333 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048410.1 CDS nsrR NC_011083.1 4664541 4664966 D negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4664541..4664966 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048411.1 CDS rnr NC_011083.1 4665004 4667442 D '3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs'; exoribonuclease R 4665004..4667442 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048412.1 CDS SeHA_C4787 NC_011083.1 4667533 4668264 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4667533..4668264 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048413.1 CDS SeHA_C4788 NC_011083.1 4668396 4668800 D hypothetical protein 4668396..4668800 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048414.1 CDS SeHA_C4789 NC_011083.1 4668815 4669513 D identified by match to protein family HMM PF04012; PspA/IM30 family protein 4668815..4669513 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083720.1 CDS SeHA_C4790 NC_011083.1 4669513 4670583 D potassium channel protein 4669513..4670583 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048415.1 CDS SeHA_C4791 NC_011083.1 4670580 4671239 D hypothetical protein 4670580..4671239 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048416.1 CDS SeHA_C4792 NC_011083.1 4671257 4671655 D identified by match to protein family HMM PF03994; hypothetical protein 4671257..4671655 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048417.1 CDS SeHA_C4793 NC_011083.1 4671665 4672303 D identified by match to protein family HMM PF06693; hypothetical protein 4671665..4672303 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048418.1 CDS SeHA_C4794 NC_011083.1 4672306 4673469 D identified by match to protein family HMM PF03738; glutathionylspermidine synthase 4672306..4673469 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048419.1 CDS SeHA_C4795 NC_011083.1 4673554 4675176 D catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4673554..4675176 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048420.1 CDS SeHA_C4796 NC_011083.1 4675221 4675496 R identified by match to protein family HMM PF07338; hypothetical protein complement(4675221..4675496) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048421.1 CDS SeHA_C4797 NC_011083.1 4675627 4675929 R 'in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility'; biofilm stress and motility protein A complement(4675627..4675929) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048422.1 CDS SeHA_C4798 NC_011083.1 4676140 4676889 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4676140..4676889 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048423.1 CDS SeHA_C4799 NC_011083.1 4676886 4677641 R negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR complement(4676886..4677641) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048424.1 CDS SeHA_C4800 NC_011083.1 4677746 4678810 R L-ascorbate 6-phosphate lactonase complement(4677746..4678810) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048425.1 CDS ulaA NC_011083.1 4679173 4680570 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4679173..4680570 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048426.1 CDS ulaB NC_011083.1 4680586 4680891 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4680586..4680891 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048427.1 CDS ulaC NC_011083.1 4680901 4681365 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4680901..4681365 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048428.1 CDS ulaD NC_011083.1 4681379 4682029 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4681379..4682029 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048429.1 CDS ulaE NC_011083.1 4682039 4682893 D UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4682039..4682893 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048430.1 CDS sgaE NC_011083.1 4682893 4683579 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4682893..4683579 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048431.1 CDS SeHA_C4807 NC_011083.1 4683681 4683872 D identified by glimmer; putative; hypothetical protein 4683681..4683872 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048432.1 CDS SeHA_C4808 NC_011083.1 4683907 4684104 R identified by glimmer; putative; hypothetical protein complement(4683907..4684104) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048433.1 CDS rpsF NC_011083.1 4684454 4684849 D 'binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21'; 30S ribosomal protein S6 4684454..4684849 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048434.1 CDS priB NC_011083.1 4684856 4685170 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4684856..4685170 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048435.1 CDS rpsR NC_011083.1 4685175 4685402 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4685175..4685402 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048436.1 CDS rplI NC_011083.1 4685444 4685893 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4685444..4685893 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048437.1 CDS SeHA_C4813 NC_011083.1 4686041 4686967 D identified by match to protein family HMM PF00892; exported membrane protein 4686041..4686967 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048438.1 CDS SeHA_C4814 NC_011083.1 4687017 4687652 R identified by match to protein family HMM PF04225; match to protein family HMM PF08525; opacity-associated protein A complement(4687017..4687652) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048439.1 CDS fklB NC_011083.1 4687872 4688492 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4687872..4688492 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048440.1 CDS cycA NC_011083.1 4688788 4690197 D 'involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine'; D-alanine/D-serine/glycine permease 4688788..4690197 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048441.1 CDS SeHA_C4817 NC_011083.1 4690309 4690971 R Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein complement(4690309..4690971) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048442.1 CDS SeHA_C4818 NC_011083.1 4691074 4692039 R identified by match to protein family HMM PF00892; hypothetical protein complement(4691074..4692039) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048443.1 CDS SeHA_C4819 NC_011083.1 4692120 4692968 R identified by match to protein family HMM PF01073; match to protein family HMM PF02254; match to protein family HMM PF05368; match to protein family HMM PF07993; hypothetical protein complement(4692120..4692968) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_008083721.1 CDS SeHA_C4820 NC_011083.1 4693056 4693442 D transcriptional regulator 4693056..4693442 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048444.1 CDS cpdB NC_011083.1 4693500 4695443 R 'periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate'; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein complement(4693500..4695443) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048445.1 CDS SeHA_C4822 NC_011083.1 4695456 4695677 R identified by glimmer; putative; hypothetical protein complement(4695456..4695677) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048446.1 CDS cysQ NC_011083.1 4695711 4696451 D 'catalyzes the formation of AMP from adenosine-3',5'-bisphosphate'; adenosine-3'(2'),5'-bisphosphate nucleotidase 4695711..4696451 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048447.1 CDS SeHA_C4824 NC_011083.1 4696441 4696998 R identified by match to protein family HMM PF09695; match to protein family HMM TIGR01626; hypothetical protein complement(4696441..4696998) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048448.1 CDS SeHA_C4825 NC_011083.1 4697325 4697531 D identified by match to protein family HMM PF06526; hypothetical protein 4697325..4697531 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048449.1 CDS SeHA_C4826 NC_011083.1 4697616 4698959 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; transporter complement(4697616..4698959) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048450.1 CDS msrA NC_011083.1 4699142 4699780 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4699142..4699780) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048451.1 CDS SeHA_C4828 NC_011083.1 4699835 4699951 D identified by glimmer; putative; hypothetical protein 4699835..4699951 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048452.1 CDS SeHA_C4829 NC_011083.1 4699993 4701726 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein 4699993..4701726 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048453.1 CDS SeHA_C4830 NC_011083.1 4701723 4705502 D identified by match to protein family HMM PF04357; hypothetical protein 4701723..4705502 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048454.1 CDS SeHA_C4831 NC_011083.1 4705505 4705849 D identified by match to protein family HMM PF06094; hypothetical protein 4705505..4705849 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048455.1 CDS SeHA_C4832 NC_011083.1 4705903 4707111 R identified by match to protein family HMM PF07690; sugar transporter complement(4705903..4707111) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048456.1 CDS SeHA_C4833 NC_011083.1 4707108 4708271 R identified by match to protein family HMM PF01979; metallo-dependent hydrolase complement(4707108..4708271) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048457.1 CDS ppa NC_011083.1 4708681 4709211 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(4708681..4709211) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048458.1 CDS fbp NC_011083.1 4709438 4710436 R 'catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate'; fructose-1,6-bisphosphatase complement(4709438..4710436) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048459.1 CDS mpl NC_011083.1 4710611 4711984 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4710611..4711984 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048460.1 CDS yjgA NC_011083.1 4712091 4712642 R identified by match to protein family HMM PF04751; hypothetical protein complement(4712091..4712642) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048461.1 CDS pmbA NC_011083.1 4712750 4714090 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4712750..4714090 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048462.1 CDS SeHA_C4839 NC_011083.1 4714189 4714575 D identified by match to protein family HMM PF07361; soluble cytochrome b562 4714189..4714575 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048463.1 CDS SeHA_C4841 NC_011083.1 4714862 4715191 D identified by match to protein family HMM PF00874; match to protein family HMM TIGR03582; PRD domain-containing protein 4714862..4715191 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048464.1 CDS SeHA_C4842 NC_011083.1 4715202 4715564 D identified by match to protein family HMM TIGR03577; hypothetical protein 4715202..4715564 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048465.1 CDS SeHA_C4843 NC_011083.1 4715564 4715866 D identified by match to protein family HMM TIGR03578; hypothetical protein 4715564..4715866 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048466.1 CDS SeHA_C4844 NC_011083.1 4715889 4716665 D identified by match to protein family HMM TIGR03580; hypothetical protein 4715889..4716665 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048467.1 CDS SeHA_C4845 NC_011083.1 4716677 4717321 D identified by match to protein family HMM TIGR03579; hypothetical protein 4716677..4717321 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048468.1 CDS SeHA_C4846 NC_011083.1 4717380 4718513 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4717380..4718513 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048469.1 CDS SeHA_C4847 NC_011083.1 4718497 4719615 D identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437; hypothetical protein 4718497..4719615 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048470.1 CDS SeHA_C4848 NC_011083.1 4719612 4720352 D identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581; hypothetical protein 4719612..4720352 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048471.1 CDS SeHA_C4849 NC_011083.1 4720369 4722282 D identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; transcriptional antiterminator, BglG 4720369..4722282 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048472.1 CDS SeHA_C4850 NC_011083.1 4722360 4722602 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4722360..4722602 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048473.1 CDS SeHA_C4851 NC_011083.1 4722592 4722876 D identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; stability protein StbE 4722592..4722876 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048474.1 CDS nrdG NC_011083.1 4722880 4723344 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(4722880..4723344) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048475.1 CDS nrdD NC_011083.1 4723561 4725699 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(4723561..4725699) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048476.1 CDS SeHA_C4854 NC_011083.1 4725904 4726074 D hypothetical protein 4725904..4726074 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048477.1 CDS treC NC_011083.1 4726108 4727760 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; trehalose-6-phosphate hydrolase complement(4726108..4727760) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048478.1 CDS treB NC_011083.1 4727810 4729228 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunit IIBC complement(4727810..4729228) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048479.1 CDS treR NC_011083.1 4729366 4730313 R regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor complement(4729366..4730313) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048480.1 CDS mgtA NC_011083.1 4730649 4733405 D P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4730649..4733405 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048481.1 CDS SeHA_C4860 NC_011083.1 4733521 4733967 R identified by match to protein family HMM PF01527; transposase complement(4733521..4733967) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048482.1 CDS SeHA_C4861 NC_011083.1 4734042 4734428 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP complement(4734042..4734428) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048483.1 CDS pyrI NC_011083.1 4734505 4734966 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit complement(4734505..4734966) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048484.1 CDS pyrB NC_011083.1 4734979 4735914 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(4734979..4735914) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048485.1 CDS SeHA_C4864 NC_011083.1 4736142 4736630 R identified by match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor ArgR complement(4736142..4736630) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048486.1 CDS SeHA_C4865 NC_011083.1 4736627 4736743 R identified by glimmer; putative; hypothetical protein complement(4736627..4736743) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048487.1 CDS SeHA_C4866 NC_011083.1 4736817 4738220 R identified by match to protein family HMM PF03606; C4-dicarboxylate anaerobic carrier complement(4736817..4738220) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048488.1 CDS argF NC_011083.1 4738276 4739280 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(4738276..4739280) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048489.1 CDS arcC NC_011083.1 4739392 4740324 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(4739392..4740324) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048490.1 CDS arcA NC_011083.1 4740335 4741555 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(4740335..4741555) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048491.1 CDS SeHA_C4871 NC_011083.1 4742230 4742682 D identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 4742230..4742682 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048492.1 CDS argF NC_011083.1 4742756 4743760 R 'catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.'; ornithine carbamoyltransferase subunit I complement(4742756..4743760) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048493.1 CDS SeHA_C4873 NC_011083.1 4743926 4744342 D identified by match to protein family HMM PF06877; hypothetical protein 4743926..4744342 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048494.1 CDS SeHA_C4874 NC_011083.1 4744532 4744990 D identified by match to protein family HMM PF01797; transposase 4744532..4744990 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048495.1 CDS SeHA_C4875 NC_011083.1 4745114 4745878 D identified by match to protein family HMM PF06175; tRNA-(ms[2]io[6]A)-hydroxylase 4745114..4745878 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048496.1 CDS SeHA_C4877 NC_011083.1 4746112 4746600 R hypothetical protein complement(4746112..4746600) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048497.1 CDS SeHA_C4878 NC_011083.1 4746707 4747210 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(4746707..4747210) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048498.1 CDS SeHA_C4879 NC_011083.1 4747405 4748592 D identified by match to protein family HMM PF05987; hypothetical protein 4747405..4748592 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048499.1 CDS valS NC_011083.1 4748734 4751589 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(4748734..4751589) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048500.1 CDS holC NC_011083.1 4751589 4752032 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(4751589..4752032) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048501.1 CDS pepA NC_011083.1 4752169 4753680 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(4752169..4753680) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048502.1 CDS SeHA_C4883 NC_011083.1 4754075 4755175 D identified by match to protein family HMM PF03739; permease 4754075..4755175 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048503.1 CDS SeHA_C4884 NC_011083.1 4755175 4756257 D identified by match to protein family HMM PF03739; hypothetical protein 4755175..4756257 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048504.1 CDS SeHA_C4885 NC_011083.1 4756463 4757461 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator IdnR complement(4756463..4757461) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048505.1 CDS SeHA_C4886 NC_011083.1 4757525 4758844 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; gluconate:H+ symporter family transporter complement(4757525..4758844) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048506.1 CDS SeHA_C4887 NC_011083.1 4758906 4759670 R 'Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate'; gluconate 5-dehydrogenase complement(4758906..4759670) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048507.1 CDS SeHA_C4888 NC_011083.1 4759695 4760726 R NAD-binding; L-idonate 5-dehydrogenase complement(4759695..4760726) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048508.1 CDS idnK NC_011083.1 4760943 4761473 D identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313; D-gluconate kinase 4760943..4761473 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048509.1 CDS SeHA_C4890 NC_011083.1 4761501 4762520 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; hypothetical protein complement(4761501..4762520) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048510.1 CDS SeHA_C4892 NC_011083.1 4763330 4763644 R hypothetical protein complement(4763330..4763644) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048511.1 CDS SeHA_C4893 NC_011083.1 4763805 4764584 D hypothetical protein 4763805..4764584 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048512.1 CDS SeHA_C4894 NC_011083.1 4765202 4768060 D identified by match to protein family HMM PF00176; match to protein family HMM PF00271; helicase family protein 4765202..4768060 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048513.1 CDS SeHA_C4895 NC_011083.1 4768063 4772985 D type II restriction enzyme, methylase subunit 4768063..4772985 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048514.1 CDS SeHA_C4896 NC_011083.1 4772985 4779326 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF09369; DEAD/DEAH box helicase 4772985..4779326 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048515.1 CDS SeHA_C4897 NC_011083.1 4779323 4781440 D identified by match to protein family HMM PF00580; UvrD/REP helicase 4779323..4781440 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048516.1 CDS SeHA_C4899 NC_011083.1 4781873 4782295 D identified by match to protein family HMM PF00903; metallothiol transferase FosB 4781873..4782295 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048517.1 CDS SeHA_C4900 NC_011083.1 4782648 4783523 D HNH nuclease 4782648..4783523 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048518.1 CDS SeHA_C4901 NC_011083.1 4784003 4784719 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(4784003..4784719) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048519.1 CDS SeHA_C4902 NC_011083.1 4785279 4786904 R identified by match to protein family HMM PF02353; match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM PF08242; SAM-dependent methyltransferase complement(4785279..4786904) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048520.1 CDS SeHA_C4903 NC_011083.1 4786915 4787172 R hypothetical protein complement(4786915..4787172) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048521.2 CDS SeHA_C4904 NC_011083.1 4787661 4788269 D identified by match to protein family HMM PF06353; hypothetical protein 4787661..4788269 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048522.1 CDS SeHA_C4905 NC_011083.1 4788521 4789516 D hypothetical protein 4788521..4789516 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048523.1 CDS SeHA_C4906 NC_011083.1 4789792 4790703 D hypothetical protein 4789792..4790703 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048524.1 CDS SeHA_C4907 NC_011083.1 4790746 4790862 R identified by glimmer; putative; hypothetical protein complement(4790746..4790862) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048525.1 CDS SeHA_C4908 NC_011083.1 4790880 4791008 D identified by glimmer; putative; hypothetical protein 4790880..4791008 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048526.1 CDS SeHA_C4909 NC_011083.1 4791001 4791369 D identified by match to protein family HMM PF03625; hypothetical protein 4791001..4791369 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048527.1 CDS SeHA_C4910 NC_011083.1 4791386 4792051 R identified by match to protein family HMM PF01738; dienelactone hydrolase complement(4791386..4792051) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048528.1 CDS SeHA_C4911 NC_011083.1 4792401 4793174 D regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4792401..4793174 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048529.1 CDS trpS NC_011083.1 4793175 4794188 R 'catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; tryptophanyl-tRNA synthetase II complement(4793175..4794188) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048530.2 CDS SeHA_C4913 NC_011083.1 4794906 4795436 D identified by match to protein family HMM PF05638; hypothetical protein 4794906..4795436 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048531.1 CDS SeHA_C4914 NC_011083.1 4795675 4796409 D identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; aspartate racemase 4795675..4796409 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048532.1 CDS SeHA_C4915 NC_011083.1 4796415 4797323 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator complement(4796415..4797323) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048533.1 CDS iadA NC_011083.1 4797442 4798614 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975; isoaspartyl dipeptidase complement(4797442..4798614) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048534.1 CDS SeHA_C4917 NC_011083.1 4798627 4799088 R identified by match to protein family HMM PF07670; hypothetical protein complement(4798627..4799088) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048535.1 CDS SeHA_C4918 NC_011083.1 4799085 4799756 R identified by match to protein family HMM PF07670; transporter gate domain-containing protein complement(4799085..4799756) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048536.1 CDS SeHA_C4919 NC_011083.1 4799872 4800045 R identified by glimmer; putative; hypothetical protein complement(4799872..4800045) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048537.1 CDS SeHA_C4920 NC_011083.1 4800629 4801813 R identified by match to protein family HMM PF06779; match to protein family HMM PF07690; major facilitator family transporter protein complement(4800629..4801813) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048538.1 CDS SeHA_C4921 NC_011083.1 4802033 4803304 R identified by match to protein family HMM PF04286; hypothetical protein complement(4802033..4803304) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048539.1 CDS SeHA_C4922 NC_011083.1 4803391 4804632 R identified by match to protein family HMM PF07690; multidrug resistance protein MdtM complement(4803391..4804632) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048540.1 CDS SeHA_C4923 NC_011083.1 4804689 4804832 R identified by glimmer; putative; hypothetical protein complement(4804689..4804832) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048541.1 CDS SeHA_C4924 NC_011083.1 4805111 4805623 D hypothetical protein 4805111..4805623 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048542.1 CDS SeHA_C4925 NC_011083.1 4805620 4805733 R identified by glimmer; putative; hypothetical protein complement(4805620..4805733) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048543.1 CDS SeHA_C4926 NC_011083.1 4805804 4807174 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase (NAD) family protein 4805804..4807174 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048544.1 CDS SeHA_C4927 NC_011083.1 4807379 4807543 D identified by match to protein family HMM PF06568; hypothetical protein 4807379..4807543 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048545.1 CDS SeHA_C4928 NC_011083.1 4807618 4808319 R hypothetical protein complement(4807618..4808319) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048546.1 CDS SeHA_C4929 NC_011083.1 4808393 4808725 R involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE complement(4808393..4808725) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048547.1 CDS SeHA_C4930 NC_011083.1 4808952 4810361 R identified by match to protein family HMM PF01420; type I restriction enzyme StySJI specificity protein complement(4808952..4810361) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048548.1 CDS SeHA_C4931 NC_011083.1 4810358 4811947 R identified by match to protein family HMM PF02384; type I restriction enzyme EcoKI M protein complement(4810358..4811947) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048549.1 CDS hsdR NC_011083.1 4812105 4815614 R restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; type I restriction enzyme EcoKI subunit R complement(4812105..4815614) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048550.1 CDS SeHA_C4933 NC_011083.1 4815812 4816726 D identified by match to protein family HMM PF04471; Mrr restriction system protein 4815812..4816726 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048551.1 CDS SeHA_C4934 NC_011083.1 4816995 4817282 D identified by match to protein family HMM PF04365; hypothetical protein 4816995..4817282 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048552.1 CDS SeHA_C4935 NC_011083.1 4817275 4817571 D hypothetical protein 4817275..4817571 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048553.1 CDS SeHA_C4936 NC_011083.1 4817646 4818602 R identified by match to protein family HMM PF02492; match to protein family HMM PF07683; GTP-binding protein YjiA complement(4817646..4818602) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048554.1 CDS SeHA_C4937 NC_011083.1 4818613 4818816 R identified by match to protein family HMM PF04328; hypothetical protein complement(4818613..4818816) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048555.1 CDS SeHA_C4938 NC_011083.1 4818911 4821061 R identified by match to protein family HMM PF02554; carbon starvation family protein complement(4818911..4821061) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048556.1 CDS SeHA_C4939 NC_011083.1 4821428 4823089 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 4821428..4823089 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048557.1 CDS SeHA_C4940 NC_011083.1 4823202 4823351 R hypothetical protein complement(4823202..4823351) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048558.1 CDS SeHA_C4943 NC_011083.1 4826280 4826702 D identified by match to protein family HMM PF03610; PTS system fructose subfamily transporter subunit IIA 4826280..4826702 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048559.1 CDS SeHA_C4944 NC_011083.1 4826717 4827178 D identified by match to protein family HMM PF03830; PTS system transporter subunit IIB 4826717..4827178 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048560.1 CDS SeHA_C4945 NC_011083.1 4827204 4827983 D identified by match to protein family HMM PF03609; phosphotransferase enzyme II C component 4827204..4827983 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048561.1 CDS SeHA_C4946 NC_011083.1 4827961 4828809 D identified by match to protein family HMM PF03613; PTS system fructose-specific transporter subunit IID 4827961..4828809 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048562.1 CDS SeHA_C4947 NC_011083.1 4828822 4829883 D identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase 4828822..4829883 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048563.1 CDS SeHA_C4948 NC_011083.1 4829901 4830911 D identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase 4829901..4830911 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048564.1 CDS SeHA_C4949 NC_011083.1 4831045 4833336 R catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I complement(4831045..4833336) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048565.1 CDS SeHA_C4950 NC_011083.1 4833619 4834080 R hypothetical protein complement(4833619..4834080) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048566.1 CDS SeHA_C4951 NC_011083.1 4834138 4834875 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(4834138..4834875) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048567.1 CDS SeHA_C4952 NC_011083.1 4834878 4835417 R 'This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N''; primosomal protein DnaI complement(4834878..4835417) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048568.1 CDS SeHA_C4953 NC_011083.1 4835510 4835983 R hypothetical protein complement(4835510..4835983) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048569.1 CDS SeHA_C4954 NC_011083.1 4835974 4836918 R identified by match to protein family HMM PF06738; hypothetical protein complement(4835974..4836918) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048570.1 CDS SeHA_C4955 NC_011083.1 4837463 4838188 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 4837463..4838188 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048571.1 CDS SeHA_C4956 NC_011083.1 4838149 4838823 D regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4838149..4838823 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048572.1 CDS SeHA_C4957 NC_011083.1 4838874 4839332 R identified by match to protein family HMM PF04073; YbaK/prolyl-tRNA synthetase domain-containing protein complement(4838874..4839332) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048573.1 CDS SeHA_C4958 NC_011083.1 4839483 4840271 R involved in ferric hydroximate transport; identified by match to protein family HMM PF06276; ferric hydroximate transport ferric iron reductase complement(4839483..4840271) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048574.1 CDS SeHA_C4959 NC_011083.1 4840392 4841456 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(4840392..4841456) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048575.1 CDS SeHA_C4960 NC_011083.1 4841707 4841943 D identified by match to protein family HMM PF07256; tryptophan-specific transport protein 4841707..4841943 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048576.1 CDS rsmC NC_011083.1 4842484 4843512 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(4842484..4843512) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048577.1 CDS holD NC_011083.1 4843615 4844052 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4843615..4844052 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048578.2 CDS rimI NC_011083.1 4843997 4844443 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 4843997..4844443 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048579.1 CDS yjjG NC_011083.1 4844465 4845142 D 'manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily'; nucleotidase 4844465..4845142 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048580.1 CDS prfC NC_011083.1 4845234 4846823 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4845234..4846823 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048581.1 CDS osmY NC_011083.1 4847225 4847842 D identified by match to protein family HMM PF04972; hypothetical protein 4847225..4847842 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048582.1 CDS SeHA_C4970 NC_011083.1 4847971 4848132 D identified by glimmer; putative; hypothetical protein 4847971..4848132 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048583.1 CDS SeHA_C4971 NC_011083.1 4848235 4849329 D identified by match to protein family HMM PF01734; patatin 4848235..4849329 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048584.1 CDS SeHA_C4972 NC_011083.1 4849326 4850099 D identified by match to protein family HMM PF01026; deoxyribonuclease YjjV 4849326..4850099 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048585.1 CDS SeHA_C4973 NC_011083.1 4850132 4850995 R identified by match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate lyase activating enzyme complement(4850132..4850995) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048586.1 CDS SeHA_C4974 NC_011083.1 4850967 4852517 R hypothetical protein complement(4850967..4852517) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048587.1 CDS deoC NC_011083.1 4852777 4853556 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4852777..4853556 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048588.1 CDS deoA NC_011083.1 4853680 4855002 D 'Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate'; thymidine phosphorylase 4853680..4855002 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048589.1 CDS deoB NC_011083.1 4855054 4856277 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4855054..4856277 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048590.1 CDS deoD NC_011083.1 4856487 4857206 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4856487..4857206 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048591.1 CDS SeHA_C4979 NC_011083.1 4857244 4857816 R hypothetical protein complement(4857244..4857816) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048592.1 CDS SeHA_C4980 NC_011083.1 4857813 4860221 R identified by match to protein family HMM PF00577; fimbrial usher protein complement(4857813..4860221) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048593.1 CDS SeHA_C4981 NC_011083.1 4860235 4860942 R member of the periplasmic pilus chaperone family of proteins; periplasmic chaperone protein complement(4860235..4860942) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048594.1 CDS SeHA_C4982 NC_011083.1 4861020 4861709 R identified by match to protein family HMM PF06551; hypothetical protein complement(4861020..4861709) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048595.1 CDS SeHA_C4983 NC_011083.1 4861757 4862446 R identified by match to protein family HMM PF06551; hypothetical protein complement(4861757..4862446) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048596.1 CDS SeHA_C4984 NC_011083.1 4862508 4862657 D identified by glimmer; putative; hypothetical protein 4862508..4862657 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048597.1 CDS lplA NC_011083.1 4862759 4863775 R Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A complement(4862759..4863775) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048598.1 CDS SeHA_C4987 NC_011083.1 4863809 4864453 R hypothetical protein complement(4863809..4864453) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048599.1 CDS serB NC_011083.1 4864570 4865538 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4864570..4865538 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048600.1 CDS radA NC_011083.1 4865622 4867004 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4865622..4867004 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048601.1 CDS SeHA_C4990 NC_011083.1 4867145 4868377 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4867145..4868377 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048602.1 CDS SeHA_C4991 NC_011083.1 4868495 4870162 R 'ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence'; ABC transporter ATP-binding protein complement(4868495..4870162) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048603.1 CDS SeHA_C4992 NC_011083.1 4870371 4872308 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4870371..4872308 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048604.1 CDS trpR NC_011083.1 4872366 4872692 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4872366..4872692 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048605.1 CDS SeHA_C4994 NC_011083.1 4872794 4873309 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(4872794..4873309) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048606.1 CDS SeHA_C4995 NC_011083.1 4873358 4874005 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4873358..4874005 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048607.1 CDS rob NC_011083.1 4874002 4874871 R identified by match to protein family HMM PF00165; match to protein family HMM PF06445; right origin-binding protein complement(4874002..4874871) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048608.1 CDS SeHA_C4997 NC_011083.1 4875068 4875556 D identified by match to protein family HMM PF05981; hypothetical protein 4875068..4875556 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048609.1 CDS SeHA_C4998 NC_011083.1 4875569 4876258 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4875569..4876258 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048610.1 CDS SeHA_C4999 NC_011083.1 4876258 4877682 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4876258..4877682 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048611.1 CDS SeHA_C5000 NC_011083.1 4877740 4879089 D identified by match to protein family HMM PF06123; hypothetical protein 4877740..4879089 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048612.1 CDS SeHA_C5001 NC_011083.1 4879147 4880232 R identified by match to protein family HMM PF00419; major fimbrial subunit complement(4879147..4880232) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048613.1 CDS SeHA_C5002 NC_011083.1 4880273 4880830 R identified by match to protein family HMM PF00419; fimbrial subunit complement(4880273..4880830) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048614.2 CDS SeHA_C5003 NC_011083.1 4880848 4883385 R identified by match to protein family HMM PF00577; outer membrane usher protein SfmD complement(4880848..4883385) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048615.1 CDS SeHA_C5004 NC_011083.1 4883431 4884114 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pili assembly chaperone complement(4883431..4884114) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048616.1 CDS SeHA_C5005 NC_011083.1 4884185 4884730 R identified by match to protein family HMM PF00419; fimbrial chaperone complement(4884185..4884730) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048617.1 CDS SeHA_C5006 NC_011083.1 4885069 4885740 R hypothetical protein complement(4885069..4885740) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048618.1 CDS arcA NC_011083.1 4886706 4887422 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator complement(4886706..4887422) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 YP_002048619.1 CDS SeHA_C5009 NC_011083.1 4888058 4888744 D member of the SPOUT superfamily of methyltransferases; RNA methyltransferase 4888058..4888744 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0289 tRNA SeHA_C0289 NC_011083.1 298521 298597 D tRNA-Ile 298521..298597 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0290 tRNA SeHA_C0290 NC_011083.1 298706 298783 D tRNA-Ala 298706..298783 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0292 tRNA SeHA_C0292 NC_011083.1 302594 302672 D tRNA-Asp 302594..302672 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0303 tRNA SeHA_C0303 NC_011083.1 312033 312111 D tRNA-Asp 312033..312111 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0365 tRNA SeHA_C0365 NC_011083.1 376760 376835 D tRNA-Thr 376760..376835 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0664 tRNA SeHA_C0664 NC_011083.1 661988 662064 D tRNA-Arg 661988..662064 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0670 tRNA SeHA_C0670 NC_011083.1 666414 666486 D tRNA-OTHER 666414..666486 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0791 tRNA SeHA_C0791 NC_011083.1 786423 786499 R tRNA-Gln complement(786423..786499) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0792 tRNA SeHA_C0792 NC_011083.1 786541 786617 R tRNA-Gln complement(786541..786617) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0793 tRNA SeHA_C0793 NC_011083.1 786662 786740 R tRNA-Met complement(786662..786740) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0794 tRNA SeHA_C0794 NC_011083.1 786754 786830 R tRNA-Gln complement(786754..786830) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0795 tRNA SeHA_C0795 NC_011083.1 786865 786939 R tRNA-Gln complement(786865..786939) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0796 tRNA SeHA_C0796 NC_011083.1 786962 787048 R tRNA-Leu complement(786962..787048) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0798 tRNA SeHA_C0798 NC_011083.1 787055 787133 R tRNA-Met complement(787055..787133) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0878 tRNA SeHA_C0878 NC_011083.1 867016 867093 D tRNA-Lys 867016..867093 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0879 tRNA SeHA_C0879 NC_011083.1 867224 867299 D tRNA-Val 867224..867299 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0880 tRNA SeHA_C0880 NC_011083.1 867303 867378 D tRNA-Lys 867303..867378 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0881 tRNA SeHA_C0881 NC_011083.1 867427 867504 D tRNA-Lys 867427..867504 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0882 tRNA SeHA_C0882 NC_011083.1 867638 867713 D tRNA-Lys 867638..867713 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C1049 tRNA SeHA_C1049 NC_011083.1 1031805 1031894 R tRNA-Ser complement(1031805..1031894) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C1195 tRNA SeHA_C1195 NC_011083.1 1180046 1180135 D tRNA-Ser 1180046..1180135 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C1244 tRNA SeHA_C1244 NC_011083.1 1229089 1229178 R tRNA-Ser complement(1229089..1229178) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C1364 tRNA SeHA_C1364 NC_011083.1 1338255 1338333 D tRNA-Arg 1338255..1338333 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C1365 tRNA SeHA_C1365 NC_011083.1 1338335 1338403 D tRNA-OTHER 1338335..1338403 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C1382 tRNA SeHA_C1382 NC_011083.1 1350692 1350770 D tRNA-Arg 1350692..1350770 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C1556 tRNA SeHA_C1556 NC_011083.1 1507161 1507239 R tRNA-Val complement(1507161..1507239) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C1557 tRNA SeHA_C1557 NC_011083.1 1507248 1507326 R tRNA-Val complement(1507248..1507326) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C1947 tRNA SeHA_C1947 NC_011083.1 1900372 1900458 D tRNA-Tyr 1900372..1900458 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C1949 tRNA SeHA_C1949 NC_011083.1 1900661 1900747 D tRNA-Tyr 1900661..1900747 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2157 tRNA SeHA_C2157 NC_011083.1 2083710 2083796 R tRNA-Leu complement(2083710..2083796) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2158 tRNA SeHA_C2158 NC_011083.1 2083808 2083881 R tRNA-Cys complement(2083808..2083881) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2159 tRNA SeHA_C2159 NC_011083.1 2083934 2084009 R tRNA-Gly complement(2083934..2084009) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2218 tRNA SeHA_C2218 NC_011083.1 2129790 2129881 R tRNA-Ser complement(2129790..2129881) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2220 tRNA SeHA_C2220 NC_011083.1 2130866 2130943 D tRNA-Asn 2130866..2130943 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2222 tRNA SeHA_C2222 NC_011083.1 2131836 2131913 D tRNA-Asn 2131836..2131913 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2234 tRNA SeHA_C2234 NC_011083.1 2141776 2141853 R tRNA-Asn complement(2141776..2141853) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2236 tRNA SeHA_C2236 NC_011083.1 2143609 2143686 D tRNA-Asn 2143609..2143686 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2466 tRNA SeHA_C2466 NC_011083.1 2378340 2378418 D tRNA-Pro 2378340..2378418 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2637 tRNA SeHA_C2637 NC_011083.1 2550593 2550669 D tRNA-Arg 2550593..2550669 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2669 tRNA SeHA_C2669 NC_011083.1 2586740 2586817 R tRNA-Ala complement(2586740..2586817) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2670 tRNA SeHA_C2670 NC_011083.1 2586858 2586935 R tRNA-Ala complement(2586858..2586935) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2674 tRNA SeHA_C2674 NC_011083.1 2589640 2589715 D tRNA-Val 2589640..2589715 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2675 tRNA SeHA_C2675 NC_011083.1 2589760 2589837 D tRNA-Val 2589760..2589837 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2676 tRNA SeHA_C2676 NC_011083.1 2589877 2589954 D tRNA-Val 2589877..2589954 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2677 tRNA SeHA_C2677 NC_011083.1 2589958 2590033 D tRNA-Lys 2589958..2590033 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2874 tRNA SeHA_C2874 NC_011083.1 2808154 2808231 R tRNA-Glu complement(2808154..2808231) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3007 tRNA SeHA_C3007 NC_011083.1 2944437 2944515 R tRNA-Arg complement(2944437..2944515) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3008 tRNA SeHA_C3008 NC_011083.1 2944707 2944785 R tRNA-Arg complement(2944707..2944785) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3009 tRNA SeHA_C3009 NC_011083.1 2944846 2944924 R tRNA-Arg complement(2944846..2944924) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3010 tRNA SeHA_C3010 NC_011083.1 2944984 2945062 R tRNA-Arg complement(2944984..2945062) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3011 tRNA SeHA_C3011 NC_011083.1 2945064 2945158 R tRNA-Ser complement(2945064..2945158) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3201 tRNA SeHA_C3201 NC_011083.1 3123703 3123779 D tRNA-Met 3123703..3123779 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3202 tRNA SeHA_C3202 NC_011083.1 3123809 3123885 D tRNA-Met 3123809..3123885 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3267 tRNA SeHA_C3267 NC_011083.1 3188610 3188685 R tRNA-Gly complement(3188610..3188685) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3358 tRNA SeHA_C3358 NC_011083.1 3268512 3268589 D tRNA-Phe 3268512..3268589 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3467 tRNA SeHA_C3467 NC_011083.1 3371160 3371235 D tRNA-Met 3371160..3371235 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3584 tRNA SeHA_C3584 NC_011083.1 3473817 3473893 R tRNA-Met complement(3473817..3473893) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3587 tRNA SeHA_C3587 NC_011083.1 3477065 3477153 R tRNA-Leu complement(3477065..3477153) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3695 tRNA SeHA_C3695 NC_011083.1 3581202 3581279 R tRNA-Thr complement(3581202..3581279) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3699 tRNA SeHA_C3699 NC_011083.1 3584599 3584676 R tRNA-Glu complement(3584599..3584676) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3956 tRNA SeHA_C3956 NC_011083.1 3833500 3833578 R tRNA-Pro complement(3833500..3833578) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4077 tRNA SeHA_C4077 NC_011083.1 3961586 3961680 D tRNA-Sec 3961586..3961680 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4223 tRNA SeHA_C4223 NC_011083.1 4111649 4111726 D tRNA-Glu 4111649..4111726 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4227 tRNA SeHA_C4227 NC_011083.1 4115171 4115249 D tRNA-Asp 4115171..4115249 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4228 tRNA SeHA_C4228 NC_011083.1 4115256 4115333 D tRNA-Trp 4115256..4115333 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4260 tRNA SeHA_C4260 NC_011083.1 4150815 4150891 D tRNA-Arg 4150815..4150891 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4261 tRNA SeHA_C4261 NC_011083.1 4150945 4151022 D tRNA-His 4150945..4151022 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4262 tRNA SeHA_C4262 NC_011083.1 4151042 4151128 D tRNA-Leu 4151042..4151128 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4263 tRNA SeHA_C4263 NC_011083.1 4151170 4151248 D tRNA-Pro 4151170..4151248 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4315 tRNA SeHA_C4315 NC_011083.1 4206046 4206122 D tRNA-Ile 4206046..4206122 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4316 tRNA SeHA_C4316 NC_011083.1 4206233 4206310 D tRNA-Ala 4206233..4206310 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4462 tRNA SeHA_C4462 NC_011083.1 4349546 4349622 D tRNA-Ile 4349546..4349622 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4463 tRNA SeHA_C4463 NC_011083.1 4349733 4349810 D tRNA-Ala 4349733..4349810 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4470 tRNA SeHA_C4470 NC_011083.1 4356765 4356842 D tRNA-Thr 4356765..4356842 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4471 tRNA SeHA_C4471 NC_011083.1 4356850 4356934 D tRNA-Tyr 4356850..4356934 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4473 tRNA SeHA_C4473 NC_011083.1 4357051 4357125 D tRNA-Gly 4357051..4357125 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4474 tRNA SeHA_C4474 NC_011083.1 4357131 4357208 D tRNA-Thr 4357131..4357208 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4510 tRNA SeHA_C4510 NC_011083.1 4391705 4391782 D tRNA-Glu 4391705..4391782 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4739 tRNA SeHA_C4739 NC_011083.1 4620435 4620512 R tRNA-Phe complement(4620435..4620512) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4770 tRNA SeHA_C4770 NC_011083.1 4650357 4650432 D tRNA-Gly 4650357..4650432 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4771 tRNA SeHA_C4771 NC_011083.1 4650589 4650664 D tRNA-Gly 4650589..4650664 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4772 tRNA SeHA_C4772 NC_011083.1 4650821 4650896 D tRNA-Gly 4650821..4650896 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4891 tRNA SeHA_C4891 NC_011083.1 4762742 4762828 D tRNA-Leu 4762742..4762828 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4961 tRNA SeHA_C4961 NC_011083.1 4841974 4842062 R tRNA-Leu complement(4841974..4842062) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4962 tRNA SeHA_C4962 NC_011083.1 4842093 4842179 R tRNA-Leu complement(4842093..4842179) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4963 tRNA SeHA_C4963 NC_011083.1 4842206 4842294 R tRNA-Leu complement(4842206..4842294) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0288 rRNA rrs NC_011083.1 296917 298450 D 16S ribosomal RNA 296917..298450 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C0291 rRNA rrf NC_011083.1 302288 302403 D 5S ribosomal RNA 302288..302403 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2872 rRNA rrf NC_011083.1 2804641 2804756 R 5S ribosomal RNA complement(2804641..2804756) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C5010 rRNA SeHA_C5010 NC_011083.1 2804958 2807958 R 23S ribosomal RNA complement(join(2804958..2807344,2807403..2807958)) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C2875 rRNA rrs NC_011083.1 2808317 2809850 R 16S ribosomal RNA complement(2808317..2809850) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3694 rRNA rrf NC_011083.1 3581048 3581163 R 5S ribosomal RNA complement(3581048..3581163) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3696 rRNA rrf NC_011083.1 3581293 3581408 R 5S ribosomal RNA complement(3581293..3581408) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3698 rRNA rrl NC_011083.1 3581502 3584406 R 23S ribosomal RNA complement(3581502..3584406) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C3700 rRNA rrs NC_011083.1 3584762 3586295 R 16S ribosomal RNA complement(3584762..3586295) Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4222 rRNA rrs NC_011083.1 4110030 4111563 D 16S ribosomal RNA 4110030..4111563 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4224 rRNA rrl NC_011083.1 4111919 4114908 D 23S ribosomal RNA 4111919..4114908 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4226 rRNA rrf NC_011083.1 4115002 4115117 D 5S ribosomal RNA 4115002..4115117 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4314 rRNA rrs NC_011083.1 4204442 4205975 D 16S ribosomal RNA 4204442..4205975 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4317 rRNA rrl NC_011083.1 4206490 4209395 D 23S ribosomal RNA 4206490..4209395 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4318 rRNA rrf NC_011083.1 4209592 4209707 D 5S ribosomal RNA 4209592..4209707 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4461 rRNA rrs NC_011083.1 4347942 4349475 D 16S ribosomal RNA 4347942..4349475 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4464 rRNA rrl NC_011083.1 4349990 4352897 D 23S ribosomal RNA 4349990..4352897 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4466 rRNA rrf NC_011083.1 4353095 4353210 D 5S ribosomal RNA 4353095..4353210 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4509 rRNA rrs NC_011083.1 4390086 4391619 D 16S ribosomal RNA 4390086..4391619 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 SeHA_C4512 rRNA rrf NC_011083.1 4395183 4395298 D 5S ribosomal RNA 4395183..4395298 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476