-- dump date 20140620_043542 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 321314000001 SEQ_END SEQ_END NC_006855.1 49558 49558 DR NC_006855.1; contig end 49558..49558 Salmonella enterica subsp. enterica serovar Choleraesuis str. 321314000002 SEQ_END SEQ_END NC_006856.1 138742 138742 DR NC_006856.1; contig end 138742..138742 Salmonella enterica subsp. enterica serovar Choleraesuis str. 321314000003 SEQ_END SEQ_END NC_006905.1 4755700 4755700 DR NC_006905.1; contig end 4755700..4755700 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209255.1 CDS SCV01 NC_006855.1 49073 552 R transposase complement(join(49073..49558,1..552)) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209256.1 CDS spvR NC_006855.1 1161 2054 D IPR000847: bacterial regulatory protein LysR; transcriptional activator 1161..2054 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209257.1 CDS spvA NC_006855.1 2566 3333 D M3 in mba region; IPR003518: Salmonella virulence plasmid 28.1 kDa A protein; virulence protein 2566..3333 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209258.1 CDS spvB NC_006855.1 3515 5290 D IPR003284: Salmonella virulence plasmid 65 kDa B protein; 65 kDa virulence protein 3515..5290 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209259.1 CDS spvC NC_006855.1 5571 6296 D IPR003519: Salmonella virulence-associated 28 kDa protein; virulence protein 5571..6296 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209260.1 CDS spvD NC_006855.1 6557 7207 D IPR008834: Salmonella plasmid virulence SpvD; virulence protein VsdE 6557..7207 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209261.1 CDS SCV07 NC_006855.1 7334 7759 R IPR002686: transposase IS200-like; transposase complement(7334..7759) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209262.1 CDS vsdF NC_006855.1 7816 8166 D virulence protein VsdF 7816..8166 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209263.1 CDS SCV09 NC_006855.1 8292 8792 R IPR003535: intimin bacterial adhesion mediator protein; hypothetical protein complement(8292..8792) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209264.1 CDS SCV10 NC_006855.1 8672 9259 R IPR002482: peptidoglycan-binding LysM; hypothetical protein complement(8672..9259) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209265.1 CDS SCV11 NC_006855.1 9512 9997 R hypothetical protein complement(9512..9997) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209266.1 CDS SCV12 NC_006855.1 9991 10500 R hypothetical protein complement(9991..10500) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209267.1 CDS SCV13 NC_006855.1 10644 11195 R IPR001633: EAL domain; hypothetical protein complement(10644..11195) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209268.1 CDS rsd NC_006855.1 11204 11986 R protein D; IPR002104: phage integrase; resolvase complement(11204..11986) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209269.1 CDS SCV15 NC_006855.1 12021 12542 R hypothetical protein complement(12021..12542) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209270.1 CDS SCV16 NC_006855.1 12539 12829 R hypothetical protein complement(12539..12829) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209271.1 CDS ccdB NC_006855.1 12831 13136 R LetB protein; protein G; controlled cell death protein; post-segregation toxin; toxin addiction system; plasmid maintenance protein CcdB complement(12831..13136) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209272.1 CDS ccdA NC_006855.1 13138 13356 R LetA protein; protein H; LynA; plasmid maintenance protein CcdA complement(13138..13356) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209273.1 CDS SCV19 NC_006855.1 14032 14553 D hypothetical protein 14032..14553 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209274.1 CDS repA/repC NC_006855.1 15796 16815 D IPR000525: initiator RepB protein; IPR002584: RepA protein; RepFIB replication protein A 15796..16815 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209275.1 CDS SCV21 NC_006855.1 17104 17265 R afa region; site-specific recombinase complement(17104..17265) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209276.1 CDS SCV22 NC_006855.1 17318 17704 R IPR005220: conserved hypothetical protein 156; protein YgiW precursor complement(17318..17704) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209277.1 CDS pefB NC_006855.1 18410 18712 D IPR004356: P pili regulatory PapB protein; major pilu subunit operon regulatory protein PapB 18410..18712 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209278.1 CDS pefA NC_006855.1 18987 19505 D IPR000259: fimbrial protein; F107 fimbrial protein precursor 18987..19505 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209279.1 CDS pefC NC_006855.1 19732 22140 D IPR000015: fimbrial biogenesis outer membrane usher protein; outer membrane usher protein PefC precursor 19732..22140 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209280.1 CDS pefD NC_006855.1 22142 22825 D IPR001829: bacterial pili assembly chaperone; chaperone protein FanE precursor 22142..22825 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209281.2 CDS repA/repB NC_006855.1 23483 24352 R RepA; replication protein complement(23483..24352) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209282.1 CDS tap/repC NC_006855.1 24345 24422 R acts to regulate the expression of the plasmid replication protein RepA in the IncFII plasmid group; RepA leader peptide Tap complement(24345..24422) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209283.1 CDS SCV29 NC_006855.1 25006 25584 D hypothetical protein 25006..25584 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209284.1 CDS fio2 NC_006855.1 25830 26393 R conjugal transfer protein; IPR007950: fertility inhibition; conjugal transfer fertility inhibition protein FinO complement(25830..26393) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209285.1 CDS SCV31 NC_006855.1 26448 27188 R IPR008875: TraX; conjugal transfer pilus acetylation protein TraX complement(26448..27188) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209286.1 CDS SCV32 NC_006855.1 27242 27931 R DNA helicase I; TraI protein complement(27242..27931) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209287.1 CDS SCV33 NC_006855.1 27889 29724 R DNA helicase I; TraI protein complement(27889..29724) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209288.1 CDS SCV34 NC_006855.1 29817 30419 R TrbH protein complement(29817..30419) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209289.1 CDS SCV35 NC_006855.1 30419 32617 R type IV secretion system coupling protein; similar to F plasmid TraD; conjugal transfer protein TraD complement(30419..32617) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209290.1 CDS SCV36 NC_006855.1 32989 33720 R IPR008874: enterobacterial TraT complement resistance; conjugal transfer surface exclusion protein TraT complement(32989..33720) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209291.1 CDS SCV37 NC_006855.1 34262 35068 R TraG protein complement(34262..35068) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209292.1 CDS samA NC_006855.1 35265 35687 D IPR006197: peptidase S24: IPR006198: peptidase S24; SamA protein 35265..35687 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209293.1 CDS umuC NC_006855.1 35687 36961 D binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 35687..36961 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209294.1 CDS parB NC_006855.1 37043 38020 R IPR003115: ParB-like nuclease: IPR004437: ParB-like partition protein; plasmid partition protein B complement(37043..38020) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209295.1 CDS parA NC_006855.1 38017 39222 R IPR006095: Glu/Leu/Phe/Val dehydrogenase; plasmid partition protein A complement(38017..39222) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209296.1 CDS ytl2 NC_006855.1 39637 40578 D IPR006842: putative transposase YhgA-like; hypothetical protein 39637..40578 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209297.1 CDS SCV43 NC_006855.1 40610 41176 R hypothetical protein complement(40610..41176) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209298.1 CDS SCV44 NC_006855.1 41233 41568 R hypothetical protein complement(41233..41568) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209299.1 CDS ytl1 NC_006855.1 41752 42168 R hypothetical protein complement(41752..42168) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209300.1 CDS tlpA NC_006855.1 42254 43369 R myosin heavy chain gizzard smooth muscle complement(42254..43369) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209301.1 CDS SCV47 NC_006855.1 43643 44122 R hypothetical protein complement(43643..44122) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209302.1 CDS mig5 NC_006855.1 44771 45511 D IPR001765: prokaryotic carbonic anhydrase: IPR006311: twin-arginine translocation pathway signal; carbonic anhydrase chloroplast precursor 44771..45511 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209303.1 CDS rlgA NC_006855.1 45646 46278 D IPR006118: site-specific recombinase; IPR006119: resolvase, N-terminal; integrase-like protein Y4LS 45646..46278 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209304.1 CDS SCV50 NC_006855.1 46262 47926 D IPR001584: integrase catalytic domain; hypothetical protein 46262..47926 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209305.1 CDS SCV51 NC_006855.1 47916 48884 D IPR003593: AAA ATPase; hypothetical protein 47916..48884 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209306.1 CDS SC001 NC_006856.1 466 819 D hypothetical protein 466..819 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209307.1 CDS SC002 NC_006856.1 1068 1460 D hypothetical protein 1068..1460 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209308.1 CDS pecM NC_006856.1 1598 2482 D IPR000620: protein of unknown function DUF6; hypothetical protein 1598..2482 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209309.1 CDS tetA NC_006856.1 2514 3713 R IPR001958: tetracycline resistance protein; IPR004734: multidrug resistance protein; IPR005828: general substrate transporter; IPR005829: sugar transporter superfamily; IPR007114: major facilitator superfamily; tetracycline efflux protein complement(2514..3713) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209310.1 CDS tetR NC_006856.1 3792 4469 D IPR001137: glycoside hydrolase family 11; IPR001647: bacterial regulatory protein TetR (HTH motif); IPR003012: tetracycline repressor protein; IPR004111: tetracycline repressor; RK2 tetracycline repressor protein 3792..4469 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209311.1 CDS tnpA NC_006856.1 4501 4743 R relaxase/helicase complement(4501..4743) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209312.1 CDS tnpA NC_006856.1 4801 5475 R IPR002513: transposase Tn3; transposase complement(4801..5475) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209313.1 CDS tnpA NC_006856.1 5814 8786 R IPR002513: transposase Tn3; transposase complement(5814..8786) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209314.1 CDS tnpR NC_006856.1 8789 9088 R IPR006120: resolvase helix-turn-helix domain; recombinase complement(8789..9088) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209315.1 CDS tnpA NC_006856.1 9000 9392 R drug-resistance protein; putative transposase complement(9000..9392) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209316.1 CDS cat2 NC_006856.1 10014 10655 R CAT-II; IPR001707: chloramphenicol acetyl transferase; chloramphenicol acetyl transferase II complement(10014..10655) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209317.1 CDS SC012 NC_006856.1 10805 11239 R hypothetical protein complement(10805..11239) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209318.1 CDS tnpA NC_006856.1 11484 12089 D IPR001584: integrase catalytic domain; transposase 11484..12089 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209319.1 CDS tnpA NC_006856.1 12035 12952 R IPR002513: transposase Tn3; transposase complement(12035..12952) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209320.1 CDS tnpR NC_006856.1 12955 13440 R IPR006118: site-specific recombinase; IPR006119: resolvase, N-terminal; IPR006120: resolvase helix-turn-helix domain; resolvase complement(12955..13440) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209321.1 CDS tnpA NC_006856.1 13480 14085 R IPR001584: integrase catalytic domain; transposase complement(13480..14085) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209322.1 CDS tnpR NC_006856.1 13657 14634 D IPR000209: peptidase S8 subtilase serine protease; IPR006118: site-specific recombinase; IPR006119: resolvase, N-terminal; IPR006120: resolvase helix-turn-helix domain; hypothetical protein 13657..14634 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209323.1 CDS tem-1 NC_006856.1 14817 15626 D IPR000871: Beta-lactamase, class A; IPR001466: Beta-lactamase; beta-lactamase 14817..15626 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209324.1 CDS SC019 NC_006856.1 15718 15810 R drug-resistance protein; hypothetical protein complement(15718..15810) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209325.1 CDS merA NC_006856.1 15842 17536 D IPR000103: pyridine nucleotide-disulphide oxidoreductase, class-II; IPR000815: mercuric reductase; IPR001100: pyridine nucleotide-disulphide oxidoreductase, class I; IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR004099: pyridine nucleotide-disulphide oxidoreductase dimerisation domain; IPR006121: heavy metal transport/detoxification protein; IPR006191: heavy metal binding; drug-resistance protein; putative mercuric reductase 15842..17536 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209326.1 CDS merD NC_006856.1 17554 17916 D IPR000551: bacterial regulatory protein, MerR family; drug-resistance protein; transcriptional regulator MerD 17554..17916 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209327.1 CDS merE NC_006856.1 17913 18149 D IPR007746: MerE; putative mercury resistance protein 17913..18149 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209328.1 CDS urf2 NC_006856.1 17969 18853 D IPR001633: EAL domain; Urf2 17969..18853 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209329.1 CDS tniAdelta1 NC_006856.1 18892 20196 D IPR001584: integrase catalytic domain; TniAdelta1 18892..20196 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209330.1 CDS tnpA NC_006856.1 20225 20947 D IPR001584: integrase catalytic domain; drug-resistance protein; hypothetical protein 20225..20947 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209331.1 CDS aph NC_006856.1 21137 21952 R IPR002575: aminoglycoside phosphotransferase; IPR008266: tyrosine protein kinase, active site; aminoglycoside 3'-phosphotransferase complement(21137..21952) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209332.1 CDS tnpA NC_006856.1 22085 22822 D IPR001584: integrase catalytic domain; hypothetical protein 22085..22822 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209333.1 CDS tnpR NC_006856.1 22815 23201 D hypothetical protein 22815..23201 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209334.1 CDS int2 NC_006856.1 23420 24433 R IPR002104: phage integrase; IPR004107: phage integrase, N-terminal SAM-like; drug-resistance protein; hypothetical protein complement(23420..24433) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209335.1 CDS tri NC_006856.1 24578 25075 D IPR001796: dihydrofolate reductase; dihydrofolate reductase 24578..25075 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209336.1 CDS SC031 NC_006856.1 25324 25449 R hypothetical protein complement(25324..25449) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209337.1 CDS aadA2 NC_006856.1 25483 26274 D streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 25483..26274 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209338.1 CDS ebr NC_006856.1 26438 26785 D IPR000390: small multidrug resistance protein; drug-resistance protein; ORF3-QacEdelta1 fusion protein 26438..26785 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209339.1 CDS sulI NC_006856.1 26779 27618 D IPR000489: dihydropteroate synthase, DHPS; IPR006390: dihydropteroate synthase; drug-resistance protein; dihydropteroate synthase 26779..27618 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209340.1 CDS sulI3' NC_006856.1 27746 28246 D IPR000182: GCN5-related N-acetyltransferase; similar to gp:TTU42226_2; SulI3' 27746..28246 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209341.1 CDS tniBdelta1 NC_006856.1 28215 29207 R IPR008868: bacterial TniB; NTP-binding protein complement(28215..29207) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209342.1 CDS tnpA NC_006856.1 29220 29912 R putative transposase complement(29220..29912) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209343.1 CDS tnpA NC_006856.1 29367 30089 D IPR001584: integrase catalytic domain; hypothetical protein 29367..30089 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209344.1 CDS SC039 NC_006856.1 30035 31627 R IPR001789: response regulator receiver; IPR003594: ATP-binding region, ATPase-like; IPR003661: histidine kinase A, N-terminal; IPR004358: bacterial sensor protein, C-terminal; IPR005467: histidine kinase; hypothetical protein complement(30035..31627) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209345.1 CDS SC040 NC_006856.1 31624 32112 R hypothetical protein complement(31624..32112) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209346.1 CDS SC041 NC_006856.1 32105 33058 R hypothetical protein complement(32105..33058) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209347.1 CDS SC042 NC_006856.1 33092 33997 R IPR001789: response regulator receiver; drug-resistance protein; hypothetical protein complement(33092..33997) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209348.1 CDS tem67 NC_006856.1 34275 34475 D hypothetical protein 34275..34475 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209349.1 CDS tnpA NC_006856.1 34469 35191 D IPR001584: integrase catalytic domain; drug-resistance protein; transposase 34469..35191 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209350.1 CDS mefE NC_006856.1 35250 35489 D macrolide-efflux determinant 35250..35489 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209351.1 CDS yusZ NC_006856.1 35635 36498 D IPR002198: short-chain dehydrogenase/reductase SDR; IPR002347: glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; short chain dehydrogenase 35635..36498 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209352.1 CDS yqkA NC_006856.1 36536 36781 D drug-resistance protein; hypothetical protein 36536..36781 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209353.1 CDS sulII NC_006856.1 37250 38041 D IPR000489: dihydropteroate synthase, DHPS; IPR006390: dihydropteroate synthase; dihydropteroate synthase 37250..38041 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209354.1 CDS tnpA NC_006856.1 38288 38974 D IPR001207: transposase, mutator family; similar to Pseudomonas cepacia insertion sequence IS406 and IS407 hypothetical protein 1 (S28978) and Burkholderia cepacia insertion sequence IS406 ORF1 (AAA25037); transposase 38288..38974 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209355.1 CDS qacF NC_006856.1 39221 39553 R IPR000390: small multidrug resistance protein; drug-resistance protein; quaternary ammonium compound resistance protein complement(39221..39553) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209356.1 CDS aadA2 NC_006856.1 39723 40514 R streptomycin 3'-adenyltransferase; aminoglycoside resistance protein complement(39723..40514) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209357.1 CDS cmlA NC_006856.1 40607 41866 R IPR001411: tetracycline resistance protein TetB; IPR001958: tetracycline resistance protein; IPR004734: multidrug resistance protein; IPR004812: drug resistance transporter Bcr/CflA subfamily; IPR005828: general substrate transporter; IPR007114: major facilitator superfamily; similar to Pseudomonas aeruginosa chloramphenicol resistance protein CmlA (A47033) and P. aeruginosa nonenzymatic chloramphenicol-resistance protein (AAA26057); chloramphenicol resistance protein complement(40607..41866) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209358.2 CDS aadA2 NC_006856.1 42128 42919 R streptomycin 3'-adenyltransferase; aminoglycoside resistance protein complement(42128..42919) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209359.1 CDS SC054 NC_006856.1 42977 43585 R IPR005834: haloacid dehalogenase-like hydrolase; IPR006383: HAD-superfamily hydrolase, subfamily IB (PSPase-like); IPR006385: HAD-superfamily subfamily IB hydrolase, hypothetical 2; hypothetical protein complement(42977..43585) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209360.1 CDS sat NC_006856.1 43681 44760 R IPR000073: alpha/beta hydrolase fold; IPR000379: esterase/lipase/thioesterase; IPR003089: alpha/beta hydrolase; streptothricin acetyl-transferase complement(43681..44760) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209361.1 CDS int2 NC_006856.1 44690 45703 D IPR002104: phage integrase; IPR004107: phage integrase, N-terminal SAM-like; drug-resistance protein; integrase 44690..45703 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209362.1 CDS tnpM NC_006856.1 45648 46256 D IPR001633: EAL domain; hypothetical protein 45648..46256 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209363.1 CDS tnpA NC_006856.1 46523 47245 D IPR001584: integrase catalytic domain; hypothetical protein 46523..47245 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209364.1 CDS SC059 NC_006856.1 47279 47770 R hypothetical protein complement(47279..47770) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209365.1 CDS paa4 NC_006856.1 47877 48614 D IPR006118: site-specific recombinase; IPR006119: resolvase, N-terminal; IPR006120: resolvase helix-turn-helix domain; resolvase 47877..48614 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209366.1 CDS SC061 NC_006856.1 48611 48835 D hypothetical protein 48611..48835 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209367.1 CDS insA NC_006856.1 49264 49539 D IPR003220: insertion element protein; transposition protein 49264..49539 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209368.1 CDS insB NC_006856.1 49458 49961 D IPR005063: transposase; transposition protein 49458..49961 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209369.1 CDS SC064 NC_006856.1 50174 50815 D drug-resistance protein; hypothetical protein 50174..50815 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209370.1 CDS stra NC_006856.1 51043 51936 D IPR002575: aminoglycoside phosphotransferase; StrA 51043..51936 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209371.1 CDS tnpA NC_006856.1 51955 52677 D IPR001584: integrase catalytic domain; hypothetical protein 51955..52677 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209372.1 CDS traQ NC_006856.1 52737 53264 R similar to plasmid R64 TraQ; TraQ-like protein complement(52737..53264) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209373.1 CDS traP NC_006856.1 53264 53968 R similar to plasmid R64 TraP; TraP-like protein complement(53264..53968) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209374.1 CDS traO NC_006856.1 53968 55257 R similar to plasmid R64 TraO; TraO-like protein complement(53968..55257) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209375.1 CDS traN NC_006856.1 55260 56243 R similar to plasmid R64 TraN; TraN-like protein complement(55260..56243) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209376.1 CDS traM NC_006856.1 56254 56946 R similar to plasmid R64 TraM; TraM-like protein complement(56254..56946) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209377.1 CDS traL NC_006856.1 56943 57290 R similar to plasmid R64 TraL; TraL-like protein complement(56943..57290) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209378.1 CDS sogS NC_006856.1 57308 57592 R DNA primase complement(57308..57592) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209379.1 CDS tnpA NC_006856.1 57632 58237 R IPR001584: integrase catalytic domain; transposase complement(57632..58237) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209380.1 CDS traU NC_006856.1 58327 60237 D similar to plasmid R64 TraU; TraU-like protein 58327..60237 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209381.1 CDS traV NC_006856.1 60237 60851 D similar to plasmid R64 TraV; TraV-like protein 60237..60851 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209382.1 CDS traW NC_006856.1 60818 62020 D lipoprotein 60818..62020 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209383.1 CDS traX NC_006856.1 62049 62633 D similar to plasmid R64 TraX; TraX-like protein 62049..62633 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209384.1 CDS traY NC_006856.1 62661 64898 D integral membrane protein 62661..64898 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209385.1 CDS exeAB NC_006856.1 64969 65631 D surface exclusion protein 64969..65631 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209386.1 CDS SC081 NC_006856.1 65703 65912 R hypothetical protein complement(65703..65912) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209387.1 CDS SC082 NC_006856.1 66196 66480 D hypothetical protein 66196..66480 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209388.1 CDS SC083 NC_006856.1 66545 66841 R hypothetical protein complement(66545..66841) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209389.1 CDS pndA NC_006856.1 67141 67392 D hypothetical protein 67141..67392 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209390.1 CDS SC085 NC_006856.1 67389 67487 D hypothetical protein 67389..67487 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209391.1 CDS pnd NC_006856.1 67692 67784 D hypothetical protein 67692..67784 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209392.1 CDS SC087 NC_006856.1 67864 68007 D hypothetical protein 67864..68007 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209393.1 CDS tnpA NC_006856.1 68464 69726 D IPR002559: transposase IS4; drug-resistance protein; transposase 68464..69726 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209394.2 CDS ampC NC_006856.1 70050 71195 D IPR001466: beta-lactamase; IPR001586: beta-lactamase, class C active site; beta-lactamase 70050..71195 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209395.1 CDS blc NC_006856.1 71289 71822 D lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 71289..71822 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209396.1 CDS sugE NC_006856.1 71819 72259 R IPR000390: small multidrug resistance protein; SugE protein complement(71819..72259) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209397.1 CDS SC094 NC_006856.1 73205 73297 D hypothetical protein 73205..73297 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209398.1 CDS trbA NC_006856.1 73421 74629 D similar to TrbA deposited in GenBank Accession Number BAA75143; TrbA-like protein 73421..74629 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209399.1 CDS trbB NC_006856.1 74648 75718 D IPR006663: thioredoxin domain 2; similar to gp:STYINCI1PR_4,prf:2209346D; hypothetical protein 74648..75718 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209400.1 CDS trbC NC_006856.1 75711 78002 D similar to TrbC deposited in GenBank Accession Number BAA75141; TrbC-like protein 75711..78002 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209401.1 CDS SC098 NC_006856.1 77821 77916 R hypothetical protein complement(77821..77916) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209402.1 CDS nikB NC_006856.1 78040 80739 R similar to relaxase (NikB) deposited in GenBank Accession Number BAA75140; NikB-like protein complement(78040..80739) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209403.1 CDS nikA NC_006856.1 80750 81082 R relaxosome component complement(80750..81082) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209404.1 CDS mobC NC_006856.1 81316 81591 D similar to YggA deposited in GenBank Accession Number BAB91642; MobC-like protein 81316..81591 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209405.1 CDS ydiA NC_006856.1 81739 82590 R YdiA complement(81739..82590) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209406.1 CDS SC104 NC_006856.1 82592 82966 D hypothetical protein 82592..82966 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209407.1 CDS SC105 NC_006856.1 82936 83133 D hypothetical protein 82936..83133 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209408.1 CDS ygeA NC_006856.1 83167 83418 D YgeA 83167..83418 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209409.1 CDS SC107 NC_006856.1 83449 83655 R hypothetical protein complement(83449..83655) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209410.1 CDS ydgA NC_006856.1 83717 84619 R IPR006842: similar to sp:YTL2_SALTY; putative YhgA-like transposase complement(83717..84619) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209411.1 CDS ccgA2 NC_006856.1 84616 85080 R CcgAII protein complement(84616..85080) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209412.1 CDS ydfB NC_006856.1 85182 85448 R YdfB complement(85182..85448) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209413.1 CDS ydfA NC_006856.1 85542 85976 R YdfA complement(85542..85976) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209414.1 CDS SC113 NC_006856.1 86081 86410 D hypothetical protein 86081..86410 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209415.1 CDS ard NC_006856.1 86705 87595 R anti-restriction protein complement(86705..87595) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209416.1 CDS gp43 NC_006856.1 87667 88263 R similar to pir:T13129; hypothetical protein complement(87667..88263) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209417.1 CDS psiA NC_006856.1 88260 88979 R PsiA; plasmid SOS inhibition protein A complement(88260..88979) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209418.1 CDS psiB NC_006856.1 88976 89413 R plasmid SOS inhibition protein B complement(88976..89413) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209419.2 CDS SC118 NC_006856.1 89463 91421 R IPR003115: ParB-like nuclease; IPR004437: ParB-like partition protein; similar to gp:RMPGR4A_1,prf:2006305A; ParB-like nuclease complement(89463..91421) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209420.1 CDS ykfF NC_006856.1 91480 91713 R similar to gp:AF074613_85; YkfF complement(91480..91713) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209421.1 CDS ssb NC_006856.1 91771 92298 R IPR000424: Single-Strand binding protein; single-stranded DNA-binding protein complement(91771..92298) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209422.1 CDS SC121 NC_006856.1 92419 92751 D hypothetical protein 92419..92751 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209423.1 CDS ychA NC_006856.1 92682 92996 R YchA complement(92682..92996) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209424.1 CDS ycgB NC_006856.1 93009 93203 R YcjB complement(93009..93203) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209425.1 CDS SC124 NC_006856.1 93067 93258 R orf63; hypothetical protein complement(93067..93258) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209426.1 CDS ycgC NC_006856.1 93255 93677 R YcgC complement(93255..93677) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209427.1 CDS klcA NC_006856.1 93724 94149 R IPR004914: antirestriction protein; antirestriction protein KlcA complement(93724..94149) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209428.1 CDS ycfA NC_006856.1 94567 95337 R similar to gp:AB021078_36; YcfA complement(94567..95337) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209429.1 CDS SC128 NC_006856.1 95382 95816 R similar to gp:AB011549_40; hypothetical protein complement(95382..95816) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209430.1 CDS SC129 NC_006856.1 95830 96051 R similar to gp:AF106329_5; hypothetical protein complement(95830..96051) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209431.1 CDS mboIB NC_006856.1 96052 96735 R IPR001091: Site-specific DNA-methyl transferase (cytosine-N4-specific); IPR002052: N-6 Adenine-specific DNA methylase; IPR002295: N6 adenine-specific DNA methyl transferase, D21 class; IPR002941: DNA methylase N-4/N-6; similar to gp:ECU48806_2; putative methylase complement(96052..96735) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209432.1 CDS SC131 NC_006856.1 96842 96967 D hypothetical protein 96842..96967 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209433.1 CDS parB NC_006856.1 97126 97548 R hypothetical protein complement(97126..97548) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209434.1 CDS SC135 NC_006856.1 98856 99203 D hypothetical protein 98856..99203 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209435.1 CDS SC136 NC_006856.1 99298 100269 R hypothetical protein complement(99298..100269) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209436.1 CDS impC NC_006856.1 100618 100866 D ImpC 100618..100866 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209437.1 CDS impA NC_006856.1 100863 101300 D IPR006197: Peptidase S24; IPR006198: Peptidase S24, C-terminal; similar to IMPA_SALTY,sp:18641; ImpA 100863..101300 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209438.1 CDS SC140 NC_006856.1 101499 103028 D IPR002104: phage integrase; hypothetical protein 101499..103028 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209439.1 CDS SC141 NC_006856.1 101637 103028 D IPR002104: phage integrase; hypothetical protein 101637..103028 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209440.1 CDS SC142 NC_006856.1 103028 104878 D hypothetical protein 103028..104878 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209441.1 CDS SC143 NC_006856.1 104875 106866 D IPR002104: phage integrase; hypothetical protein 104875..106866 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209442.1 CDS SC144 NC_006856.1 106868 107308 D hypothetical protein 106868..107308 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209443.1 CDS SC145 NC_006856.1 107564 108523 R hypothetical protein complement(107564..108523) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209444.1 CDS SC146 NC_006856.1 108525 109706 R hypothetical protein complement(108525..109706) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209445.1 CDS SC147 NC_006856.1 110061 111149 D hypothetical protein 110061..111149 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209446.1 CDS SC149 NC_006856.1 112815 113066 D IPR006442: Prevent-host-death family protein; hypothetical protein 112815..113066 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209447.1 CDS SC150 NC_006856.1 113120 113425 D hypothetical protein 113120..113425 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209448.1 CDS SC151 NC_006856.1 113298 113804 D hypothetical protein 113298..113804 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209449.1 CDS SC152 NC_006856.1 113896 114282 R hypothetical protein complement(113896..114282) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209450.1 CDS sopB NC_006856.1 114503 115474 R SopB; plasmid-partitioning protein complement(114503..115474) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209451.1 CDS repA NC_006856.1 117380 118390 D IPR000525: initiator RepB protein; IPR002584: RepA protein; DNA replication protein 117380..118390 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209452.1 CDS SC155 NC_006856.1 118727 118924 R hypothetical protein complement(118727..118924) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209453.1 CDS blc NC_006856.1 119181 119525 R IPR000566: Lipocalin-related protein and Bos/Can/Equ allergen; IPR001064: beta and gamma crystallin; IPR002446: Bacterial lipocalin; putative lipoprotein complement(119181..119525) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209454.1 CDS mlrA NC_006856.1 119643 120368 D IPR000551: bacterial regulatory protein, MerR family; putative transcriptional regulator 119643..120368 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209455.1 CDS yedX NC_006856.1 120468 120878 D IPR000895: Transthyretin; hypothetical protein 120468..120878 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209456.1 CDS ybgA NC_006856.1 120981 121940 D IPR007553: Protein of unknown function DUF523; putative pathogenicity island protein 120981..121940 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209457.1 CDS recF NC_006856.1 122086 123174 D IPR003439: ABC transporter; putative RecF protein 122086..123174 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209458.1 CDS tnpA NC_006856.1 123237 123959 R IPR001584: integrase catalytic domain; hypothetical protein complement(123237..123959) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209459.1 CDS SC162 NC_006856.1 123414 124127 D hypothetical protein 123414..124127 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209460.1 CDS SC163 NC_006856.1 124205 125278 R IPR000345: Cytochrome c heme-binding site; hypothetical protein complement(124205..125278) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209461.1 CDS SC164 NC_006856.1 125322 125501 R hypothetical protein complement(125322..125501) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209462.1 CDS relB NC_006856.1 125813 126052 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 125813..126052 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209463.1 CDS relE NC_006856.1 126052 126339 D hypothetical protein 126052..126339 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209464.1 CDS SC167 NC_006856.1 126223 126570 R hypothetical protein complement(126223..126570) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209465.1 CDS istB NC_006856.1 126643 127422 R IPR001270: Chaperonin clpA/B; IPR002611: IstB-like ATP-binding protein; IPR003593: AAA ATPase; transposase/IS protein complement(126643..127422) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209466.1 CDS tnpA NC_006856.1 127422 128444 R IPR000792: Bacterial regulatory protein, LuxR family; IPR001584: integrase catalytic domain; IPR002197: Helix-turn-helix, Fis-type; IPR007101: IS21-like element transposase, HTH domain; putative transposase complement(127422..128444) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209467.1 CDS SC170 NC_006856.1 129244 131451 D IPR002078: Sigma-54 factor interaction domain; hypothetical protein 129244..131451 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209468.1 CDS SC171 NC_006856.1 131454 134036 D hypothetical protein 131454..134036 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209469.1 CDS tnpA NC_006856.1 134082 134294 R hypothetical protein complement(134082..134294) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209470.1 CDS tnpA NC_006856.1 134457 135290 R IPR001584: integrase catalytic domain; hypothetical protein complement(134457..135290) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209471.1 CDS tnpA NC_006856.1 135314 135577 R IPR002514: transposase, IS3/IS911family; hypothetical protein complement(135314..135577) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209472.1 CDS mpi NC_006856.1 135590 135958 D putative mannose-6-phosphate isomerase 135590..135958 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209473.1 CDS int2 NC_006856.1 136006 136983 R IPR002104: phage integrase; IPR004107: Phage integrase, N-terminal SAM-like; integrase/recombinase complement(136006..136983) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209474.1 CDS insB NC_006856.1 137167 137544 D IPR005063: IS1 transposase; IS1 protein InsB 137167..137544 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_209475.1 CDS tnpA NC_006856.1 138055 138729 R IPR002513: transposase Tn3; transposase complement(138055..138729) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214988.1 CDS thrL NC_006905.1 190 255 D thr operon leader peptide 190..255 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214989.1 CDS thrA NC_006905.1 337 2799 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 337..2799 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214990.1 CDS thrB NC_006905.1 2801 3730 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2801..3730 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214991.1 CDS thrC NC_006905.1 3734 5020 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3734..5020 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214992.1 CDS yaaA NC_006905.1 5114 5887 R IPR001064: Beta and gamma crystallin; hypothetical protein complement(5114..5887) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214993.1 CDS yaaJ NC_006905.1 5966 7396 R IPR000005: Helix-turn-helix, AraC type; IPR001463: Sodium:alanine symporter; IPR002293: Amino acid/polyamine transporter family I; AGCS family, alanine/glycine transport protein complement(5966..7396) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214994.2 CDS talB NC_006905.1 7665 8618 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 7665..8618 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214995.1 CDS mogA NC_006905.1 8729 9319 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 8729..9319 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214996.1 CDS yaaH NC_006905.1 9376 9942 R IPR000791: GPR1/FUN34/yaaH family; hypothetical protein complement(9376..9942) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214997.1 CDS htgA NC_006905.1 10092 10805 R hypothetical protein complement(10092..10805) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214998.1 CDS yaaI NC_006905.1 10841 11245 R hypothetical protein complement(10841..11245) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_214999.1 CDS dnaK NC_006905.1 11594 13510 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 11594..13510 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215000.1 CDS dnaJ NC_006905.1 13596 14735 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 13596..14735 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215001.1 CDS ybdO NC_006905.1 15015 15962 D LysR family transcriptional regulator 15015..15962 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215002.1 CDS SC0015 NC_006905.1 16089 16433 D hypothetical protein 16089..16433 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215003.1 CDS SC0016 NC_006905.1 16494 17027 R hypothetical protein complement(16494..17027) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215004.1 CDS SC0017 NC_006905.1 17044 17361 R hypothetical protein complement(17044..17361) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215005.1 CDS hmt NC_006905.1 20059 23055 D hydroxymethyltransferase 20059..23055 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215006.1 CDS yaiV NC_006905.1 23336 24040 D hypothetical protein 23336..24040 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215007.1 CDS bcfA NC_006905.1 24470 25012 D fimbrial subunit 24470..25012 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215008.1 CDS bcfB NC_006905.1 24972 25799 D IPR001525: C-5 cytosine-specific DNA methylase; IPR001829: Bacterial pili assembly chaperone; fimbrial chaperone 24972..25799 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215009.1 CDS bcfD NC_006905.1 28426 29433 D fimbrial subunit 28426..29433 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215010.1 CDS bcfE NC_006905.1 29434 29979 D fimbrial subunit 29434..29979 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215011.1 CDS bcfF NC_006905.1 29995 30513 D fimbrial subunit 29995..30513 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215012.1 CDS bcfG NC_006905.1 30479 31210 D IPR001829: Bacterial pili assembly chaperone; fimbrial chaperone 30479..31210 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215013.1 CDS bcfH NC_006905.1 31274 32119 D IPR006663: Thioredoxin domain 2; hypothetical protein 31274..32119 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215014.1 CDS SC0027 NC_006905.1 32158 32445 D hypothetical protein 32158..32445 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215015.1 CDS SC0028 NC_006905.1 32545 32994 R hypothetical protein complement(32545..32994) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215016.1 CDS asl NC_006905.1 33693 33953 D arylsulfatase 33693..33953 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215017.1 CDS SC0030 NC_006905.1 33978 34325 D hypothetical protein 33978..34325 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215018.1 CDS yfeN NC_006905.1 34909 35673 D hypothetical protein 34909..35673 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215019.1 CDS aslB NC_006905.1 37290 38486 D arylsulfatase regulatory protein 37290..38486 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215020.1 CDS SC0033 NC_006905.1 38504 39757 D hypothetical protein 38504..39757 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215021.1 CDS nhaA NC_006905.1 40445 41611 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 40445..41611 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215022.1 CDS nhaR NC_006905.1 41673 42572 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 41673..42572 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215023.1 CDS SC0036 NC_006905.1 42627 44666 R glycosyl hydrolase complement(42627..44666) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215024.1 CDS rpsT NC_006905.1 46534 46797 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(46534..46797) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215025.1 CDS yaaY NC_006905.1 46903 47118 D hypothetical protein 46903..47118 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215026.1 CDS ribF NC_006905.1 47126 48064 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 47126..48064 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215027.1 CDS ileS NC_006905.1 48073 50943 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 48073..50943 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215028.1 CDS lspA NC_006905.1 50943 51443 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 50943..51443 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215029.1 CDS slpA NC_006905.1 51598 52047 D IPR001179: Peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 51598..52047 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215030.1 CDS ispH NC_006905.1 52050 53000 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 52050..53000 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215031.1 CDS SC0044 NC_006905.1 53200 54402 D nitrite reductase 53200..54402 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215032.1 CDS rihC NC_006905.1 54418 55338 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 54418..55338 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215033.1 CDS citB NC_006905.1 55360 56046 R IPR001789: Response regulator receiver; transcription regulator sensor for citrate complement(55360..56046) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215034.1 CDS citA NC_006905.1 56048 57706 R IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; transcription regulator, histidine kinase for citrate complement(56048..57706) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215035.1 CDS oadB NC_006905.1 57802 59103 R oxalacetate decarboxylase subunit beta complement(57802..59103) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215036.1 CDS oadA NC_006905.1 59116 60891 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(59116..60891) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215037.1 CDS oag3 NC_006905.1 60907 61149 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(60907..61149) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215038.1 CDS citN NC_006905.1 61308 62648 R IPR004679: Citrate carrier protein; citrate-sodium symport complement(61308..62648) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215039.1 CDS citC2 NC_006905.1 62893 63936 D citrate lyase synthetase 62893..63936 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215040.1 CDS citD2 NC_006905.1 63966 64259 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 63966..64259 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215041.1 CDS citE2 NC_006905.1 64256 65125 D citrate lyase subunit beta 64256..65125 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215042.1 CDS citF2 NC_006905.1 65136 66656 D bifunctional; citrate lyase subunit alpha/citrate-ACP transferase 65136..66656 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215043.1 CDS citX2 NC_006905.1 66707 67207 D hypothetical protein 66707..67207 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215044.1 CDS citG2 NC_006905.1 67185 68093 D modifier of citrate lyase 67185..68093 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215045.1 CDS dapB NC_006905.1 68273 69094 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 68273..69094 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215046.1 CDS SC0059 NC_006905.1 69746 69901 R hypothetical protein complement(69746..69901) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215047.1 CDS carA NC_006905.1 69959 71107 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 69959..71107 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215048.1 CDS carB NC_006905.1 71126 74353 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 71126..74353 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215049.1 CDS caiF NC_006905.1 74627 75022 D regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; DNA-binding transcriptional activator CaiF 74627..75022 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215050.1 CDS caiE NC_006905.1 75100 75696 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE complement(75100..75696) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215051.1 CDS caiD NC_006905.1 75806 76591 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase complement(75806..76591) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215052.1 CDS caiC NC_006905.1 76645 78198 R IPR000873: AMP-dependent synthetase and ligase; crotonobetaine/carnitine-CoA ligase complement(76645..78198) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215053.1 CDS caiB NC_006905.1 78261 79478 R catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase complement(78261..79478) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215054.1 CDS caiA NC_006905.1 79590 80732 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase complement(79590..80732) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215055.1 CDS caiT NC_006905.1 80767 82284 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter complement(80767..82284) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215056.1 CDS SC0069 NC_006905.1 82512 82697 D hypothetical protein 82512..82697 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215057.1 CDS fixA NC_006905.1 82765 83535 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; electron transfer flavoprotein FixA 82765..83535 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215058.1 CDS fixB NC_006905.1 83551 84492 D involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 83551..84492 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215059.1 CDS fixC NC_006905.1 84542 85828 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 84542..85828 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215060.1 CDS fixX NC_006905.1 85825 86112 D ferredoxin, carnitine metabolism 85825..86112 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215061.1 CDS yaaU NC_006905.1 86259 87599 D IPR003663: Sugar transporter; IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; MFS family transporter 86259..87599 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215062.1 CDS ygdI NC_006905.1 87688 87918 D outer membrane lipoprotein 87688..87918 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215063.1 CDS SC0076 NC_006905.1 88203 88619 D hypothetical protein 88203..88619 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215064.1 CDS SC0077 NC_006905.1 88842 89132 R hypothetical protein complement(88842..89132) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215065.1 CDS cysB NC_006905.1 89342 89536 D inner membrane protein 89342..89536 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215066.1 CDS SC0079 NC_006905.1 90030 91919 D sulfatase 90030..91919 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215067.1 CDS yabF NC_006905.1 92473 93003 D Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 92473..93003 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215068.1 CDS kefC NC_006905.1 92996 94858 D transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 92996..94858 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215069.1 CDS folA NC_006905.1 95057 95536 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 95057..95536 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215070.1 CDS apaH NC_006905.1 95642 96490 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(95642..96490) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215071.1 CDS apaG NC_006905.1 96501 96878 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(96501..96878) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215072.1 CDS ksgA NC_006905.1 96881 97702 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(96881..97702) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215073.1 CDS pdxA NC_006905.1 97699 98688 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(97699..98688) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215074.1 CDS surA NC_006905.1 98688 99974 R Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA complement(98688..99974) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215075.1 CDS imp NC_006905.1 100028 102388 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(100028..102388) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215076.1 CDS djlA NC_006905.1 102642 103454 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 102642..103454 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215077.1 CDS rluA NC_006905.1 103549 104208 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A complement(103549..104208) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215078.1 CDS hepA NC_006905.1 104220 107126 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(104220..107126) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215079.1 CDS polB NC_006905.1 107300 109651 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(107300..109651) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215080.1 CDS SC0093 NC_006905.1 109695 110315 R hypothetical protein complement(109695..110315) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215081.1 CDS SC0094 NC_006905.1 110833 111252 D hypothetical protein 110833..111252 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215082.1 CDS araD NC_006905.1 111258 111953 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(111258..111953) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215083.1 CDS araA NC_006905.1 112094 113596 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase complement(112094..113596) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215084.1 CDS SC0097 NC_006905.1 113546 113845 D hypothetical protein 113546..113845 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215085.1 CDS araC NC_006905.1 115653 116498 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 115653..116498 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215086.1 CDS yabI NC_006905.1 116617 117384 D DedA family membrane protein 116617..117384 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215087.1 CDS thiQ NC_006905.1 117423 118130 R with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit complement(117423..118130) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215088.1 CDS thiP NC_006905.1 118114 119724 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(118114..119724) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215089.1 CDS tbpA NC_006905.1 119700 120683 R part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit complement(119700..120683) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215090.1 CDS yabN NC_006905.1 120861 122519 R activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR complement(120861..122519) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215091.1 CDS leuD NC_006905.1 122588 122734 D hypothetical protein 122588..122734 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215092.1 CDS SC0105 NC_006905.1 123054 123335 D hypothetical protein 123054..123335 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215093.1 CDS leuD NC_006905.1 123389 123994 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(123389..123994) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215094.1 CDS leuC NC_006905.1 124005 125405 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(124005..125405) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215095.1 CDS leuB NC_006905.1 125408 126499 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(125408..126499) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215096.1 CDS leuA NC_006905.1 126499 128070 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(126499..128070) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215097.1 CDS leuL NC_006905.1 128158 128244 R involved in attenuation control of the leuABCD operon in leucine biosynthesis; leu operon leader peptide complement(128158..128244) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215098.1 CDS SC0111 NC_006905.1 128499 128597 D hypothetical protein 128499..128597 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215099.1 CDS SC0112 NC_006905.1 128687 128830 D hypothetical protein 128687..128830 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215100.2 CDS ilvI NC_006905.1 130167 131891 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 130167..131891 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215101.1 CDS ilvH NC_006905.1 131891 132385 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 131891..132385 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215102.1 CDS fruR NC_006905.1 132669 133673 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 132669..133673 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215103.1 CDS yabB NC_006905.1 134279 134737 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 134279..134737 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215104.1 CDS mraW NC_006905.1 134742 135680 D IPR002903: Bacterial methyltransferase; S-adenosyl-methyltransferase MraW 134742..135680 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215105.1 CDS ftsL NC_006905.1 135677 136042 D membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 135677..136042 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215106.1 CDS ftsI NC_006905.1 136058 137824 D division specific transpeptidase, penicillin-binding protein 3 re 136058..137824 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215107.1 CDS murE NC_006905.1 137811 139298 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 137811..139298 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215108.1 CDS murF NC_006905.1 139295 140653 D UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 139295..140653 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215109.1 CDS mraY NC_006905.1 140647 141729 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 140647..141729 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215110.1 CDS murD NC_006905.1 141732 143048 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 141732..143048 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215111.1 CDS ftsW NC_006905.1 143048 144292 D integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 143048..144292 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215112.1 CDS murG NC_006905.1 144289 145356 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 144289..145356 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215113.1 CDS murC NC_006905.1 145475 146950 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 145475..146950 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215114.1 CDS ddl NC_006905.1 146943 147863 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 146943..147863 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215115.1 CDS ftsQ NC_006905.1 147865 148695 D involved in septum formation; cell division protein FtsQ 147865..148695 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215116.1 CDS ftsA NC_006905.1 148692 149954 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 148692..149954 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215117.1 CDS ftsZ NC_006905.1 150015 151166 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 150015..151166 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215118.1 CDS lpxC NC_006905.1 151267 152184 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 151267..152184 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215119.1 CDS yacA NC_006905.1 152463 152960 D secM translational pause allows for the initiation of secA translation; SecA regulator SecM 152463..152960 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215120.1 CDS secA NC_006905.1 153022 155727 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 153022..155727 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215121.1 CDS mutT NC_006905.1 155879 156274 D IPR000086: NUDIX hydrolase; IPR003561: Mutator MutT; nucleoside triphosphate pyrophosphohydrolase 155879..156274 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215122.1 CDS akr NC_006905.1 156308 157297 R IPR001395: Aldo/keto reductase; aldo/keto reductase complement(156308..157297) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215123.1 CDS lysR NC_006905.1 157383 158324 D IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; LysR family transcriptional regulator 157383..158324 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215124.1 CDS yacG NC_006905.1 158321 158512 R zinc-binding protein complement(158321..158512) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215125.1 CDS yacF NC_006905.1 158522 159265 R hypothetical protein complement(158522..159265) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215126.1 CDS coaE NC_006905.1 159265 159885 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(159265..159885) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215127.1 CDS guaC NC_006905.1 160111 161154 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 160111..161154 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215128.1 CDS hofC NC_006905.1 161185 162387 R IPR003004: Bacterial general secretion pathway protein F; type IV pilin biogenesis protein complement(161185..162387) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215129.1 CDS hofB NC_006905.1 162377 163762 R IPR001482: Bacterial type II secretion system protein E; hypothetical protein complement(162377..163762) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215130.1 CDS ppdD NC_006905.1 163772 164209 R IPR001082: Fimbrial protein pilin; IPR001120: Prokaryotic N-terminal methylation site; major pilin subunit complement(163772..164209) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215131.2 CDS nadC NC_006905.1 164431 165324 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase complement(164431..165324) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215132.1 CDS ampD NC_006905.1 165412 165975 D N-acetyl-anhydromuranmyl-L-alanine amidase 165412..165975 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215133.1 CDS ampE NC_006905.1 165972 166826 D involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 165972..166826 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215134.1 CDS abf2 NC_006905.1 166918 167868 R hypothetical protein complement(166918..167868) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215135.1 CDS yicJ NC_006905.1 167868 169274 R IPR001092: Basic helix-loop-helix dimerization domain bHLH; Na+:galactoside symporter family permease complement(167868..169274) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215136.1 CDS aroP NC_006905.1 169438 170811 R IPR002293: Amino acid/polyamine transporter family I; IPR004840: Amino acid permease; aromatic amino acid transporter complement(169438..170811) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215137.1 CDS pdhR NC_006905.1 171374 172138 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 171374..172138 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215138.1 CDS aceE NC_006905.1 172298 174961 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 172298..174961 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215139.1 CDS aceF NC_006905.1 174976 176559 D Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; dihydrolipoamide acetyltransferase 174976..176559 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215140.1 CDS lpdA NC_006905.1 176758 178185 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 176758..178185 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215141.1 CDS SC0154 NC_006905.1 178474 178758 D outer membrane protein 178474..178758 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215142.1 CDS SC0155 NC_006905.1 178796 179587 R hypothetical protein complement(178796..179587) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215143.1 CDS yacH NC_006905.1 179600 181219 R hypothetical protein complement(179600..181219) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215144.1 CDS acnB NC_006905.1 181608 184205 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 181608..184205 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215145.1 CDS yieI NC_006905.1 184245 184709 R might be involved in hypersensitivity to nitrofurzone; inner membrane protein complement(184245..184709) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215146.1 CDS ptp NC_006905.1 185119 185442 R phosphotyrosine protein phosphatase complement(185119..185442) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215147.2 CDS yacL NC_006905.1 185713 186075 D hypothetical protein 185713..186075 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215148.1 CDS kdgT NC_006905.1 186310 187263 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 186310..187263 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215149.1 CDS ygbK NC_006905.1 187260 188531 D inner membrane protein 187260..188531 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215150.1 CDS pdxA NC_006905.1 188521 189504 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 188521..189504 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215151.1 CDS ygbI NC_006905.1 189514 190281 D IPR001034: Bacterial regulatory protein, DeoR family; LysR family transcriptional regulator 189514..190281 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215152.1 CDS speD NC_006905.1 190311 191105 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(190311..191105) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215153.1 CDS speE NC_006905.1 191126 191986 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(191126..191986) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215154.1 CDS yacC NC_006905.1 192093 192440 R hypothetical protein complement(192093..192440) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215155.1 CDS cueO NC_006905.1 192642 194252 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 192642..194252 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215156.1 CDS gcd NC_006905.1 194330 196738 R IPR001479: Bacterial quinoprotein dehydrogenase; glucose dehydrogenase complement(194330..196738) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215157.2 CDS hpt NC_006905.1 196926 197462 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 196926..197462 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215158.2 CDS yadF NC_006905.1 197520 198182 R catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase complement(197520..198182) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215159.1 CDS yadG NC_006905.1 198291 199217 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; multidrug ABC transporter ATPase 198291..199217 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215160.1 CDS yadH NC_006905.1 199214 199984 D IPR000412: ABC transporter family 2; ABC transporter membrane protein 199214..199984 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215161.1 CDS stiH NC_006905.1 200101 201180 R IPR000259: Fimbrial protein; fimbriae complement(200101..201180) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215162.1 CDS stiC NC_006905.1 201189 203732 R fimbrial usher complement(201189..203732) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215163.1 CDS stiB NC_006905.1 203759 204442 R IPR001829: Bacterial pili assembly chaperone; fimbrial chaperone complement(203759..204442) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215164.1 CDS stiA NC_006905.1 204490 205029 R fimbrial subunit complement(204490..205029) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215165.1 CDS yadI NC_006905.1 205399 205839 D PTS sugar transporter subunit IIA 205399..205839 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215166.1 CDS yadE NC_006905.1 205901 207130 D hypothetical protein 205901..207130 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215167.1 CDS panD NC_006905.1 207137 207517 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(207137..207517) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215168.1 CDS panC NC_006905.1 207612 208466 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(207612..208466) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215169.1 CDS panB NC_006905.1 208592 209383 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(208592..209383) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215170.1 CDS folK NC_006905.1 209504 209983 R catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(209504..209983) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215171.1 CDS pcnB NC_006905.1 209980 211398 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase complement(209980..211398) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215172.2 CDS yadB NC_006905.1 211539 212435 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase complement(211539..212435) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215173.2 CDS dksA NC_006905.1 212504 212959 R IPR000962: Zn-finger, prokaryotic DksA/TraR C4 type; RNA polymerase-binding transcription factor complement(212504..212959) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215174.1 CDS sfsA NC_006905.1 213136 213840 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(213136..213840) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215175.1 CDS ligT NC_006905.1 213857 214387 R 2'-5' RNA ligase complement(213857..214387) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215176.1 CDS hrpB NC_006905.1 214415 216889 D similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 214415..216889 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215177.1 CDS mrcB NC_006905.1 217030 219552 D bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b 217030..219552 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215178.1 CDS fhuA NC_006905.1 219845 222034 D involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 219845..222034 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215179.2 CDS fhuC NC_006905.1 222083 222880 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 222083..222880 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215180.1 CDS fhuD NC_006905.1 222880 223770 D Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 222880..223770 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215181.1 CDS fhuB NC_006905.1 223767 225824 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 223767..225824 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215182.1 CDS stfA NC_006905.1 226764 227324 D fimbrial subunit 226764..227324 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215183.1 CDS stfC NC_006905.1 227410 230067 D IPR000015: Fimbrial biogenesis outer membrane usher protein; IPR002092: DNA-directed RNA polymerase, bacteriophage type; fimbrial outer membrane usher 227410..230067 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215184.1 CDS stfD NC_006905.1 230085 230837 D IPR001829: Bacterial pili assembly chaperone; periplasmic fimbrial chaperone 230085..230837 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215185.1 CDS stfE NC_006905.1 230856 231368 D minor fimbrial subunit 230856..231368 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215186.1 CDS stfF NC_006905.1 231365 231841 D IPR000259: Fimbrial protein; minor fimbrial subunit 231365..231841 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215187.1 CDS stfG NC_006905.1 231841 232371 D minor fimbrial subuni 231841..232371 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215188.1 CDS yadU NC_006905.1 232371 233216 D hypothetical protein 232371..233216 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215189.1 CDS hemL NC_006905.1 233324 234604 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(233324..234604) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215190.1 CDS yadQ NC_006905.1 234774 236195 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 234774..236195 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215191.1 CDS yadR NC_006905.1 236232 236621 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 236232..236621 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215192.1 CDS yadS NC_006905.1 236722 237345 R hypothetical protein complement(236722..237345) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215193.1 CDS btuF NC_006905.1 237382 238182 R solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF complement(237382..238182) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215194.1 CDS pfs NC_006905.1 238175 238873 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(238175..238873) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215195.1 CDS dgt NC_006905.1 238958 240475 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 238958..240475 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215196.1 CDS htrA NC_006905.1 240596 242032 D protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 240596..242032 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215197.1 CDS cdaR NC_006905.1 242185 243342 D regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 242185..243342 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215198.1 CDS yaeH NC_006905.1 243431 243817 R hypothetical protein complement(243431..243817) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215199.1 CDS shiA NC_006905.1 244064 245365 D IPR007114: Major facilitator superfamily; inner membrane protein 244064..245365 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215200.1 CDS dapD NC_006905.1 245402 246226 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(245402..246226) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215201.1 CDS glnD NC_006905.1 246256 248928 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(246256..248928) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215202.1 CDS map NC_006905.1 249041 249835 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(249041..249835) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215203.1 CDS rpsB NC_006905.1 250286 251011 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 250286..251011 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215204.2 CDS tsf NC_006905.1 251269 252120 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 251269..252120 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215205.1 CDS pyrH NC_006905.1 252265 252990 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 252265..252990 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215206.1 CDS frr NC_006905.1 253137 253694 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 253137..253694 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215207.1 CDS dxr NC_006905.1 253894 255033 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 253894..255033 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215208.1 CDS uppS NC_006905.1 255346 256104 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 255346..256104 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215209.2 CDS cdsA NC_006905.1 256117 256974 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 256117..256974 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215210.1 CDS yaeL NC_006905.1 256986 258338 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 256986..258338 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215211.1 CDS yaeT NC_006905.1 258370 260787 D part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 258370..260787 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215212.1 CDS hlpA NC_006905.1 260910 261395 D IPR005632: Outer membrane protein (OmpH-like); periplasmic chaperone 260910..261395 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215213.1 CDS lpxD NC_006905.1 261399 262424 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 261399..262424 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215214.1 CDS fabZ NC_006905.1 262440 262985 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 262440..262985 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215215.1 CDS lpxA NC_006905.1 262989 263777 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 262989..263777 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215216.1 CDS lpxB NC_006905.1 263777 264925 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 263777..264925 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215217.1 CDS rnhB NC_006905.1 264922 265518 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 264922..265518 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215218.1 CDS dnaE NC_006905.1 265542 269024 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 265542..269024 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215219.1 CDS accA NC_006905.1 269037 269996 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 269037..269996 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215220.1 CDS chi2 NC_006905.1 270177 271940 D IPR000726: Glycoside hydrolase, family 19; endochitinase 270177..271940 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215221.1 CDS ldcC NC_006905.1 272016 274157 D IPR000310: Orn/Lys/Arg decarboxylase, major region; lysine decarboxylase 2, constitutive 272016..274157 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215222.1 CDS yaeR NC_006905.1 274213 274602 D IPR004361: Glyoxalase I; hypothetical protein 274213..274602 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215223.1 CDS tilS NC_006905.1 274665 275957 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 274665..275957 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215224.1 CDS rof NC_006905.1 276041 276301 R Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator complement(276041..276301) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215225.1 CDS yaeP NC_006905.1 276288 276488 R hypothetical protein complement(276288..276488) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215226.1 CDS yaeQ NC_006905.1 276686 277231 D hypothetical protein 276686..277231 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215227.1 CDS yaeJ NC_006905.1 277228 277650 D IPR000352: Class I peptide chain release factor domain; peptidyl-tRNA hydrolase domain-containing protein 277228..277650 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215228.2 CDS proS NC_006905.1 278453 280171 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(278453..280171) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215229.1 CDS yaeB NC_006905.1 280282 280989 R IPR001378: Protein of unknown function, UPF0066; hypothetical protein complement(280282..280989) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215230.1 CDS rcsF NC_006905.1 280986 281390 R outer membrane lipoprotein complement(280986..281390) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215231.1 CDS metQ NC_006905.1 281509 282324 R DL-methionine transporter substrate-binding subunit complement(281509..282324) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215232.1 CDS yaeE NC_006905.1 282363 283016 R part of the MetNIQ methionine uptake system; DL-methionine transporter permease complement(282363..283016) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215233.2 CDS metN NC_006905.1 283009 284040 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(283009..284040) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215234.1 CDS yaeD NC_006905.1 284230 284811 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 284230..284811 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215238.1 CDS dkgB NC_006905.1 290977 291780 D catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 290977..291780 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215239.1 CDS yafC NC_006905.1 291802 292716 R IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator complement(291802..292716) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215240.1 CDS ydhP NC_006905.1 292821 293996 D IPR007114: Major facilitator superfamily; drug efflux protein 292821..293996 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215241.1 CDS yafD NC_006905.1 294128 294928 D hypothetical protein 294128..294928 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215242.1 CDS yafE NC_006905.1 295006 295776 D IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase; methyltransferase in menaquinone/biotin biosynthesis 295006..295776 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215243.1 CDS mltD NC_006905.1 295832 297199 R catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D complement(295832..297199) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215244.1 CDS gloB NC_006905.1 297271 298026 R catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase complement(297271..298026) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215245.1 CDS yafS NC_006905.1 298061 298783 D hypothetical protein 298061..298783 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215246.2 CDS rnhA NC_006905.1 298780 299247 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(298780..299247) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215247.1 CDS dnaQ NC_006905.1 299302 300042 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 299302..300042 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215248.1 CDS SC0261 NC_006905.1 300574 301629 R hypothetical protein complement(300574..301629) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215249.1 CDS SC0262 NC_006905.1 301640 302635 R hypothetical protein complement(301640..302635) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215250.1 CDS SC0263 NC_006905.1 302632 304515 R hypothetical protein complement(302632..304515) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215251.1 CDS SC0264 NC_006905.1 304531 305025 R hypothetical protein complement(304531..305025) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215252.1 CDS SC0265 NC_006905.1 305022 305771 R hypothetical protein complement(305022..305771) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215253.1 CDS SC0266 NC_006905.1 305833 306735 R hypothetical protein complement(305833..306735) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215255.1 CDS SC0268 NC_006905.1 309841 310383 D hypothetical protein 309841..310383 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215256.1 CDS sirA NC_006905.1 310407 311915 D hypothetical protein 310407..311915 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215257.1 CDS SC0270 NC_006905.1 311982 312368 D hypothetical protein 311982..312368 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215258.1 CDS SC0271 NC_006905.1 312381 312827 D hypothetical protein 312381..312827 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215259.1 CDS SC0272 NC_006905.1 313079 313564 D hypothetical protein 313079..313564 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215260.1 CDS SC0273 NC_006905.1 313631 314167 D outer membrane lipoprotein 313631..314167 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215261.1 CDS SC0274 NC_006905.1 314171 315514 D hypothetical protein 314171..315514 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215262.1 CDS SC0275 NC_006905.1 315511 316815 D IPR006665: OmpA/MotB domain; hypothetical protein 315511..316815 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215263.1 CDS SC0276 NC_006905.1 316820 317593 D inner membrane protein 316820..317593 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215264.1 CDS SC0277 NC_006905.1 317783 318226 D shiga-like toxin A subunit 317783..318226 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215265.1 CDS SC0278 NC_006905.1 318260 322129 D inner membrane protein 318260..322129 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215266.1 CDS SC0279 NC_006905.1 322129 322917 D hypothetical protein 322129..322917 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215267.1 CDS SC0280 NC_006905.1 322914 323330 D hypothetical protein 322914..323330 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215268.1 CDS SC0281 NC_006905.1 323354 323875 D hypothetical protein 323354..323875 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215269.1 CDS SC0282 NC_006905.1 324271 326505 D Rhs-family protein 324271..326505 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215270.1 CDS SC0283 NC_006905.1 326517 327023 D hypothetical protein 326517..327023 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215271.1 CDS rhs NC_006905.1 327039 331820 D IPR001826: RHS protein; Rhs-family protein 327039..331820 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215272.1 CDS SC0285 NC_006905.1 331839 332147 D hypothetical protein 331839..332147 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215273.1 CDS yjiW NC_006905.1 332206 332463 R hypothetical protein complement(332206..332463) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215274.1 CDS SC0287 NC_006905.1 333900 334367 D hypothetical protein 333900..334367 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215275.1 CDS SC0288 NC_006905.1 334610 334963 D hypothetical protein 334610..334963 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215276.1 CDS SC0289 NC_006905.1 335030 335344 R hypothetical protein complement(335030..335344) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215277.1 CDS SC0290 NC_006905.1 335477 335617 R hypothetical protein complement(335477..335617) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215278.1 CDS SC0291 NC_006905.1 335820 336101 D integrase core subunit 335820..336101 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215279.1 CDS safA NC_006905.1 336851 337363 D outer membrane protein 336851..337363 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215280.1 CDS safB NC_006905.1 337447 338184 D IPR001829: Bacterial pili assembly chaperone; fimbriae assembly chaperone 337447..338184 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215281.1 CDS safC NC_006905.1 338208 340718 D IPR000015: Fimbrial biogenesis outer membrane usher protein; fimbriae usher 338208..340718 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215282.1 CDS safD NC_006905.1 340740 341210 D fimbriae subunit 340740..341210 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215283.1 CDS ybeJ NC_006905.1 341618 342439 D xylanase/chitin deacetylase 341618..342439 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215284.1 CDS sinR NC_006905.1 343256 344203 D IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; transcriptional regulator 343256..344203 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215285.1 CDS SC0298 NC_006905.1 344236 344487 R hypothetical protein complement(344236..344487) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215286.1 CDS istB NC_006905.1 344862 345128 R hypothetical protein complement(344862..345128) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215287.1 CDS tcfA NC_006905.1 346343 347053 D fimbrial protein 346343..347053 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215288.1 CDS tcfB NC_006905.1 347104 347679 D fimbrial subunit 347104..347679 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215291.1 CDS tinR NC_006905.1 351703 352176 D IPR000485: Bacterial regulatory proteins, AsnC/Lrp; transcriptional regulator 351703..352176 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215292.1 CDS TioA NC_006905.1 352316 352933 D hypothetical protein 352316..352933 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215293.1 CDS SC0306 NC_006905.1 353699 353851 R hypothetical protein complement(353699..353851) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215294.1 CDS pagN NC_006905.1 353897 354616 R adhesin complement(353897..354616) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215295.1 CDS virG NC_006905.1 354962 355369 R hypothetical protein complement(354962..355369) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215296.1 CDS yafV NC_006905.1 355679 356446 R IPR003010: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; hypothetical protein complement(355679..356446) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215297.1 CDS fadE NC_006905.1 356555 358999 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(356555..358999) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215298.1 CDS gmhA NC_006905.1 359239 359817 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 359239..359817 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215299.1 CDS yafJ NC_006905.1 360030 360797 D hypothetical protein 360030..360797 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215300.1 CDS yafK NC_006905.1 360768 361391 R hypothetical protein complement(360768..361391) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215301.1 CDS dinP NC_006905.1 361755 362810 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 361755..362810 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215302.2 CDS ykfJ NC_006905.1 363029 364168 D mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein 363029..364168 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215303.1 CDS prfH NC_006905.1 364165 364779 D similar to release factor 1 and 2; peptide chain release factor-like protein 364165..364779 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215304.1 CDS pepD NC_006905.1 364935 366392 R IPR001160: Peptidase M20C, X-His dipeptidase; aminoacyl-histidine dipeptidase complement(364935..366392) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215305.1 CDS gpt NC_006905.1 366641 367099 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 366641..367099 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215306.1 CDS frsA NC_006905.1 367188 368432 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 367188..368432 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215307.1 CDS crl NC_006905.1 368490 368891 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 368490..368891 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215308.1 CDS phoE NC_006905.1 368942 369994 R IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; outer membrane phosphoporin protein E complement(368942..369994) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215309.1 CDS proB NC_006905.1 370276 371379 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 370276..371379 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215310.1 CDS proA NC_006905.1 371391 372641 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 371391..372641 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215311.1 CDS int NC_006905.1 372847 374010 R IPR002104: Phage integrase; hypothetical protein complement(372847..374010) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215312.1 CDS eac NC_006905.1 374240 374875 R IPR000504: RNA-binding region RNP-1 (RNA recognition motif); EaC protein complement(374240..374875) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215313.1 CDS eaa NC_006905.1 374946 376121 R Eaa protein complement(374946..376121) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215314.1 CDS SC0327 NC_006905.1 376118 376579 R hypothetical protein complement(376118..376579) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215315.1 CDS SC0328 NC_006905.1 376576 377097 R hypothetical protein complement(376576..377097) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215316.1 CDS SC0329 NC_006905.1 377094 377327 R hypothetical protein complement(377094..377327) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215317.1 CDS eae NC_006905.1 377324 377701 R Eae protein complement(377324..377701) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215318.1 CDS exoD NC_006905.1 378809 379357 R endodeoxyribonuclease complement(378809..379357) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215319.1 CDS ssb NC_006905.1 379366 379872 R IPR000424: Single-strand binding protein; ssDNA-binding protein controls activity of RecBCD nuclease complement(379366..379872) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215320.1 CDS SC0333 NC_006905.1 379873 380580 R similar to Orf-235 in Salmonella typhimurium bacteriophage ST64T; hypothetical protein complement(379873..380580) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215321.1 CDS kil NC_006905.1 380710 380898 R host septation inhibitor complement(380710..380898) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215322.1 CDS rpc NC_006905.1 380879 381052 R similar to C3 protein in Salmonella typhimurium bacteriophage ST64T; IPR000278: Lambdoid phages regulatory protein CIII; C3-like protein complement(380879..381052) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215323.1 CDS SC0336 NC_006905.1 381244 381444 R hypothetical protein complement(381244..381444) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215324.1 CDS SC0337 NC_006905.1 381513 381770 R similar to 43L protein in Xanthomonas oryzae bacteriophage Xp10; hypothetical protein complement(381513..381770) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215325.1 CDS regN NC_006905.1 382199 382501 R antitermination protein complement(382199..382501) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215326.1 CDS cro NC_006905.1 383603 383818 D regulatory protein Cro (antirepressor) 383603..383818 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215327.1 CDS rpo NC_006905.1 384386 385234 D replication protein O 384386..385234 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215328.1 CDS SC0341 NC_006905.1 385342 387222 D hypothetical protein 385342..387222 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215329.1 CDS nin NC_006905.1 388012 388884 D similar to Nin protein in Bacteriophage lambda; phosphoadenosine phosphosulfate reductase family protein 388012..388884 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215330.1 CDS stx NC_006905.1 388943 389278 R hypothetical protein complement(388943..389278) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215331.1 CDS rusA NC_006905.1 389632 390027 D DLP12 prophage; Holliday junction resolvase; endodeoxyribonuclease RUS 389632..390027 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215332.1 CDS ninZ NC_006905.1 390208 390387 D protein Niprotein NZ 390208..390387 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215333.1 CDS SC0346 NC_006905.1 390384 390902 D similar to gp23 in Salmonella typhimurium bacteriophage ST64T; gp23-like protein 390384..390902 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215334.1 CDS SC0347 NC_006905.1 391363 391686 D similar to holin protein in Bacteriophage HK620; holin-like protein 391363..391686 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215336.1 CDS lycV NC_006905.1 391670 392146 D lysin 391670..392146 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215337.1 CDS enpP NC_006905.1 392143 392580 D Rz lysis protein 392143..392580 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215339.1 CDS SC0352 NC_006905.1 392786 393274 D hypothetical protein 392786..393274 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215340.1 CDS SC0353 NC_006905.1 393765 394007 D hypothetical protein 393765..394007 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215341.1 CDS SC0354 NC_006905.1 394509 396008 D similar to gp2 in Salmonella typhimurium bacteriophage ST64T; gp2-like protein 394509..396008 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215342.1 CDS SC0355 NC_006905.1 396009 398174 D packaging glycoprotein 396009..398174 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215343.1 CDS SC0356 NC_006905.1 398188 399099 D scaffolding protein 398188..399099 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215344.1 CDS SC0357 NC_006905.1 399099 400394 D coat protein 399099..400394 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215345.1 CDS SC0358 NC_006905.1 400653 401153 D DNA stabilization protein 400653..401153 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215346.1 CDS SC0359 NC_006905.1 401154 402572 D DNA stabilization protein 401154..402572 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215347.1 CDS SC0360 NC_006905.1 402576 403214 D packaged DNA stabilization protein gp26 402576..403214 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215348.1 CDS SC0361 NC_006905.1 403214 403669 D hypothetical protein 403214..403669 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215349.1 CDS SC0362 NC_006905.1 403672 404361 D DNA transfer protein gp7 403672..404361 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215350.1 CDS SC0363 NC_006905.1 404404 405723 D DNA transfer protein gp20 404404..405723 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215351.1 CDS SC0364 NC_006905.1 405723 407636 D IPR001917: Aminotransferase, class-II; TPA: injection protein 405723..407636 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215353.1 CDS SC0366 NC_006905.1 407654 407983 R hypothetical protein complement(407654..407983) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215354.1 CDS SC0367 NC_006905.1 408223 409983 D hypothetical protein 408223..409983 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215355.1 CDS SC0368 NC_006905.1 410259 411713 R hypothetical protein complement(410259..411713) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215356.1 CDS gtrB NC_006905.1 411703 412629 R IPR001173: Glycosyl transferase, family 2; bactoprenol glucosyl transferase complement(411703..412629) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215357.1 CDS gtrA NC_006905.1 412629 412997 R IPR007267: GtrA-like protein; bactoprenol-linked glucose translocase complement(412629..412997) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215358.1 CDS insF NC_006905.1 413672 414535 R IS3 transposase complement(413672..414535) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215359.1 CDS yoaC NC_006905.1 415277 415600 D hypothetical protein 415277..415600 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215360.1 CDS ynfM NC_006905.1 415842 417179 D IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; permease 415842..417179 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215361.1 CDS ledL NC_006905.1 417311 418732 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 417311..418732 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215362.1 CDS ledS NC_006905.1 418734 419360 D 3-isopropylmalate isomerase subunit 418734..419360 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215363.1 CDS faaH NC_006905.1 419375 420253 D fumarylacetoacetate (FAA) hydrolase 419375..420253 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215364.1 CDS deh NC_006905.1 420253 421167 D IPR000379: Esterase/lipase/thioesterase; IPR000639: Epoxide hydrolase; IPR003089: Alpha/beta hydrolase; hydrolase or acyltransferase 420253..421167 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215365.1 CDS ygiP NC_006905.1 421201 422166 D LysR family transcriptional regulator 421201..422166 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215366.1 CDS SC0379 NC_006905.1 423074 423472 D outer membrane protein 423074..423472 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215367.1 CDS stbD NC_006905.1 424244 425569 R fimbriae usher protein complement(424244..425569) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215368.1 CDS stbC NC_006905.1 425574 428135 R IPR000015: Fimbrial biogenesis outer membrane usher protein; fimbriae usher protein complement(425574..428135) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215369.1 CDS stbB NC_006905.1 428119 428880 R IPR001829: Bacterial pili assembly chaperone; fimbriae chaperone complement(428119..428880) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215370.1 CDS stbA NC_006905.1 428942 429478 R fimbriae major subunit complement(428942..429478) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215371.1 CDS SC0384 NC_006905.1 430112 430876 D inner membrane protein 430112..430876 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215372.1 CDS SC0385 NC_006905.1 430849 431349 D hypothetical protein 430849..431349 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215373.1 CDS rtn NC_006905.1 431649 433223 D IPR000209: Peptidase S8, subtilase serine protease; IPR001633: EAL domain; diguanylate cyclase/phosphodiesterase domain-containing protein 431649..433223 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215374.1 CDS SC0387 NC_006905.1 433323 434066 D response regulator 433323..434066 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215375.1 CDS SC0388 NC_006905.1 434039 434527 D inner membrane protein 434039..434527 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215376.1 CDS ail NC_006905.1 434928 435452 D IPR000758: Virulence-related outer membrane protein; hypothetical protein 434928..435452 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215377.1 CDS SC0390 NC_006905.1 435596 436237 D IPR000792: Bacterial regulatory protein, LuxR family; response regulator 435596..436237 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215378.1 CDS SC0391 NC_006905.1 436248 436472 D inner membrane protein 436248..436472 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215379.1 CDS yjeI NC_006905.1 436530 436889 D outer membrane lipoprotein 436530..436889 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215380.1 CDS oprM NC_006905.1 436959 438416 R outer membrane efflux protein-like protein complement(436959..438416) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215381.1 CDS mtrC NC_006905.1 441597 442823 R IPR006143: Secretion protein HlyD; cation efflux pump complement(441597..442823) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215382.1 CDS hmrR NC_006905.1 445402 445866 D IPR000551: Bacterial regulatory protein, MerR family; transcriptional regulator 445402..445866 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215383.1 CDS hmb NC_006905.1 445944 446138 D IPR006191: Heavy metal binding; copper chaperone 445944..446138 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215384.1 CDS jen NC_006905.1 446430 447683 D IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; inner membrane protein 446430..447683 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215385.1 CDS mod NC_006905.1 447872 449830 D IPR001091: Site-specific DNA-methyltransferase (cytosine-N4-specific); IPR001917: Aminotransferase, class-II; IPR002052: N-6 Adenine-specific DNA methylase;IPR002295: N6 adenine-specific DNA methyltransferase, D21 class; DNA methylase; restriction system 447872..449830 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215386.1 CDS res NC_006905.1 449840 452812 D IPR006935: Type III restriction enzyme, res subunit; DNA restriction (DNA helicase 449840..452812 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215387.1 CDS SC0400 NC_006905.1 453090 453191 D hypothetical protein 453090..453191 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215388.1 CDS cydA NC_006905.1 453308 454711 D cytochrome BD2 subunit I 453308..454711 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215389.1 CDS cydB NC_006905.1 454708 455718 D cytochrome BD2 subunit II 454708..455718 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215390.1 CDS SC0403 NC_006905.1 455735 455959 D inner membrane protein 455735..455959 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215391.1 CDS SC0404 NC_006905.1 456055 457059 D IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 456055..457059 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215392.1 CDS foxA NC_006905.1 457205 459313 D IPR000531: TonB-dependent receptor protein; ferrioxamine receptor 457205..459313 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215393.1 CDS yahN NC_006905.1 459354 459986 R IPR001123: Lysine exporter protein (LYSE/YGGA); transporter complement(459354..459986) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215394.1 CDS yahO NC_006905.1 460218 460493 D hypothetical protein 460218..460493 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215395.1 CDS prpR NC_006905.1 460629 462254 R IPR001254: Peptidase S1, chymotrypsin family; IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; prp operon regulator complement(460629..462254) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215396.1 CDS prpB NC_006905.1 462520 463407 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 462520..463407 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215397.1 CDS prpC NC_006905.1 463530 464699 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 463530..464699 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215398.1 CDS prpD NC_006905.1 464737 466188 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 464737..466188 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215399.1 CDS prpE NC_006905.1 466229 468115 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 466229..468115 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215400.1 CDS hemB NC_006905.1 468222 469196 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(468222..469196) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215401.1 CDS yaiU NC_006905.1 469709 472594 D similar to 3rd module of ATP-binding components of transporters; IPR003991: Pertactin virulence factor, C-terminal; flagellar protein 469709..472594 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215402.1 CDS yaiV NC_006905.1 472680 473303 D DNA-binding transcriptional regulator 472680..473303 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215403.1 CDS ampH NC_006905.1 473348 474505 R this protein has no known enzymatic function; beta-lactam binding protein AmpH complement(473348..474505) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215404.1 CDS sbmA NC_006905.1 474852 476072 D in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 474852..476072 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215405.1 CDS yaiW NC_006905.1 476087 477181 D outer membrane lipoprotein 476087..477181 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215406.1 CDS yaiY NC_006905.1 477219 477527 R hypothetical protein complement(477219..477527) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215407.1 CDS yaiZ NC_006905.1 477795 478010 D hypothetical protein 477795..478010 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215408.1 CDS ddl NC_006905.1 478036 479130 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(478036..479130) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215409.1 CDS SC0422 NC_006905.1 479208 479921 D hypothetical protein 479208..479921 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215410.1 CDS yceE NC_006905.1 480325 481305 D IPR001958: Tetracycline resistance protein; IPR007114: Major facilitator superfamily; permease 480325..481305 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215411.1 CDS yaiB NC_006905.1 481602 481862 D hypothetical protein 481602..481862 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215412.1 CDS psiF NC_006905.1 482211 482531 D hypothetical protein 482211..482531 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215413.1 CDS adrA NC_006905.1 482623 483735 D catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; diguanylate cyclase AdrA 482623..483735 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215414.1 CDS proC NC_006905.1 483750 484559 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(483750..484559) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215415.1 CDS yaiI NC_006905.1 484699 485154 D IPR003791: Protein of unknown function DUF188; hypothetical protein 484699..485154 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215416.1 CDS aroL NC_006905.1 485339 485884 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 485339..485884 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215417.1 CDS yaiA NC_006905.1 485911 486102 D hypothetical protein 485911..486102 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215418.1 CDS aroM NC_006905.1 486353 487030 D hypothetical protein 486353..487030 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215419.1 CDS yaiE NC_006905.1 487101 487385 D hypothetical protein 487101..487385 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215420.2 CDS rdgC NC_006905.1 487423 488334 R Required for efficient pilin antigenic variation; recombination associated protein complement(487423..488334) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215421.1 CDS yajF NC_006905.1 488460 489368 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 488460..489368 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215422.1 CDS araJ NC_006905.1 489388 490560 R member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ complement(489388..490560) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215423.1 CDS sbcC NC_006905.1 490733 493873 R with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease SbcC complement(490733..493873) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215424.1 CDS sbcD NC_006905.1 493870 495072 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease SbcD complement(493870..495072) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215425.1 CDS phoB NC_006905.1 495287 495976 D two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 495287..495976 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215426.1 CDS phoR NC_006905.1 496046 497341 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 496046..497341 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215427.1 CDS SC0440 NC_006905.1 497554 497703 R hypothetical protein complement(497554..497703) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215428.1 CDS brnQ NC_006905.1 497750 499069 D LIVCS family branched chain amino acid transporter system II (LIV-II) 497750..499069 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215429.2 CDS proY NC_006905.1 499141 500514 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; proline-specific permease 499141..500514 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215430.1 CDS malZ NC_006905.1 500676 502493 D maltodextrin glucosidase 500676..502493 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215431.1 CDS tsaA NC_006905.1 502565 503167 R thiol - alkyl hydroperoxide reductase complement(502565..503167) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215432.1 CDS yajB NC_006905.1 503377 503958 R Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; ACP phosphodieterase complement(503377..503958) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215433.1 CDS queA NC_006905.1 504052 505116 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 504052..505116 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215434.1 CDS tgt NC_006905.1 505313 506440 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 505313..506440 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215435.1 CDS yajC NC_006905.1 506463 506795 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 506463..506795 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215436.1 CDS secD NC_006905.1 506823 508670 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 506823..508670 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215437.1 CDS secF NC_006905.1 508681 509652 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 508681..509652 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215438.1 CDS SC0451 NC_006905.1 509797 510162 D hypothetical protein 509797..510162 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215439.1 CDS SC0452 NC_006905.1 510188 510880 D regulatory protein 510188..510880 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215440.1 CDS yajD NC_006905.1 511050 511397 D IPR000345: Cytochrome c heme-binding site; hypothetical protein 511050..511397 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215441.1 CDS tsx NC_006905.1 511948 512916 R IPR003055: Nucleoside-specific channel-forming protein, Tsx; nucleoside channel phage T6/colicin K receptor complement(511948..512916) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215442.1 CDS yajI NC_006905.1 513111 513650 R hypothetical protein complement(513111..513650) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215443.1 CDS nrdR NC_006905.1 513802 514251 D transcriptional regulator NrdR 513802..514251 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215444.1 CDS ribD NC_006905.1 514255 515358 D riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 514255..515358 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215445.1 CDS ribH NC_006905.1 515447 515917 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 515447..515917 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215446.1 CDS nusB NC_006905.1 515938 516357 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 515938..516357 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215447.1 CDS thiL NC_006905.1 516436 517416 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 516436..517416 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215448.1 CDS pgpA NC_006905.1 517394 517909 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 517394..517909 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215449.1 CDS yajO NC_006905.1 518013 518987 R IPR001395: Aldo/keto reductase; oxidoreductase / K + channel protein complement(518013..518987) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215450.1 CDS dxs NC_006905.1 519044 520906 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(519044..520906) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215451.1 CDS ispA NC_006905.1 520930 521829 R IPR000092: Polyprenyl synthetase; geranyltranstransferase complement(520930..521829) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215452.1 CDS xseB NC_006905.1 521830 522072 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(521830..522072) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215453.1 CDS xseB NC_006905.1 522282 523730 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 522282..523730 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215454.1 CDS phnV NC_006905.1 523774 524571 R 2-aminoethylphosphonate ABC transporter permease complement(523774..524571) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215455.1 CDS phnU NC_006905.1 524574 525434 R IPR000515: Binding-protein-dependent transport systems inner membrane component; 2-aminoethylphosphonate ABC transporter permease complement(524574..525434) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215456.1 CDS phnT NC_006905.1 525437 526546 R IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; 2-aminoethylphosphonate ABC transporter ATPase complement(525437..526546) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215457.1 CDS phnS NC_006905.1 526552 527565 R 2-aminoethylphosphonate ABC transporter substrate-binding protein complement(526552..527565) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215458.1 CDS phnR NC_006905.1 527763 528482 R IPR000524: Bacterial regulatory protein, GntR family; 2-aminoethylphosphonate transport, repressor complement(527763..528482) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215459.1 CDS phnW NC_006905.1 528622 529725 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 528622..529725 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215460.1 CDS phnX NC_006905.1 529732 530544 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 529732..530544 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215461.1 CDS thiJ NC_006905.1 530641 531231 R DJ-1 family protein complement(530641..531231) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215462.1 CDS apbA NC_006905.1 531194 532105 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(531194..532105) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215463.1 CDS yajQ NC_006905.1 532231 532722 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 532231..532722 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215464.1 CDS yajR NC_006905.1 532769 534061 R IPR007114: Major facilitator superfamily; MFS family transporter complement(532769..534061) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215465.1 CDS tnp NC_006905.1 534361 534522 R IS903 transposase complement(534361..534522) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215466.1 CDS SC0479 NC_006905.1 534670 536181 D hypothetical protein 534670..536181 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215467.1 CDS ybeQ NC_006905.1 536193 537662 D hypothetical protein 536193..537662 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215468.1 CDS cyoE NC_006905.1 537710 538645 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(537710..538645) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215469.1 CDS cyoD NC_006905.1 538612 538941 R cytochrome o ubiquinol oxidase subunit IV complement(538612..538941) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215470.1 CDS cyoC NC_006905.1 538941 539555 R IPR000298: Cytochrome c oxidase, subunit III; cytochrome o ubiquinol oxidase subunit III complement(538941..539555) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215471.1 CDS cyoB NC_006905.1 539545 541536 R IPR000883: Cytochrome c oxidase, subunit I; cytochrome o ubiquinol oxidase subunit I complement(539545..541536) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215472.1 CDS cyoA NC_006905.1 541547 542503 R cytochrome o ubiquinol oxidase subunit II complement(541547..542503) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215473.1 CDS ampG NC_006905.1 542956 544437 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter complement(542956..544437) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215474.2 CDS yajG NC_006905.1 544475 545053 R IPR005619: Uncharacterized lipoprotein; hypothetical protein complement(544475..545053) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215475.1 CDS bolA NC_006905.1 545367 545675 D positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 545367..545675 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215476.1 CDS tig NC_006905.1 546022 547320 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 546022..547320 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215477.2 CDS clpP NC_006905.1 547568 548191 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 547568..548191 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215478.1 CDS clpX NC_006905.1 548443 549714 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 548443..549714 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215479.1 CDS lon NC_006905.1 549900 552254 D IPR001412: Aminoacyl-tRNA synthetase, class I; IPR001984: Peptidase family S16; IPR008268: Peptidase S16, active site; DNA-binding ATP-dependent protease La 549900..552254 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215480.1 CDS hupB NC_006905.1 552463 552735 D histone-like DNA-binding protein; transcriptional regulator HU subunit beta 552463..552735 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215481.1 CDS cypD NC_006905.1 553026 554897 D IPR000297: PpiC-type peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl cis-trans isomerase 553026..554897 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215482.1 CDS ybaV NC_006905.1 555047 555421 D IPR000445: Helix-hairpin-helix motif; hypothetical protein 555047..555421 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215483.1 CDS ybaW NC_006905.1 555525 555923 D hypothetical protein 555525..555923 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215484.1 CDS ybaX NC_006905.1 556029 556829 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC complement(556029..556829) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215485.1 CDS ybaE NC_006905.1 556789 558504 R ABC transporter substrate-binding protein complement(556789..558504) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215486.1 CDS cof NC_006905.1 558590 559408 D IPR000150: Cof protein; hypothetical protein 558590..559408 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215487.1 CDS SC0500 NC_006905.1 559458 560513 R IPR001926: Pyridoxal-5'-phosphate-dependent enzyme, beta family; cysteine synthase/cystathionine beta-synthase complement(559458..560513) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215488.1 CDS ybaO NC_006905.1 560625 561083 D IPR000485: Bacterial regulatory proteins, AsnC/Lrp; transcriptional regulator (AsnC family) 560625..561083 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215489.1 CDS mdlA NC_006905.1 561124 562896 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; multidrug transporter membrane\ATP-binding components 561124..562896 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215490.1 CDS mdlB NC_006905.1 562889 564670 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; multidrug transporter membrane\ATP-binding components 562889..564670 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215491.1 CDS SC0504 NC_006905.1 564674 564832 D hypothetical protein 564674..564832 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215492.1 CDS glnK NC_006905.1 564883 565221 D indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 564883..565221 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215493.1 CDS amtB NC_006905.1 565253 566548 D IPR001905: Ammonium transporter; IPR002229: Blood group Rhesus C/E and D polypeptide; ammonium transporter 565253..566548 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215494.1 CDS tesB NC_006905.1 566648 567508 R acyl-CoA thioesterase complement(566648..567508) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215495.1 CDS ybaY NC_006905.1 567723 568292 D glycoprotein/polysaccharide metabolism 567723..568292 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215496.1 CDS ybaZ NC_006905.1 568325 568714 R methyltransferase complement(568325..568714) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215497.1 CDS ylaB NC_006905.1 568945 570495 R IPR001633: EAL domain; diguanylate cyclase/phosphodiesterase domain-containing protein complement(568945..570495) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215498.1 CDS rpmE2 NC_006905.1 570720 570980 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 570720..570980 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215499.1 CDS rpmJ NC_006905.1 570986 571126 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 570986..571126 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215500.1 CDS ylaC NC_006905.1 571182 571652 R hypothetical protein complement(571182..571652) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215501.1 CDS maa NC_006905.1 571770 572321 R IPR001451: Bacterial transferase hexapeptide repeat; maltose O-acetyltransferase complement(571770..572321) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215502.1 CDS hha NC_006905.1 572500 572718 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein complement(572500..572718) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215503.1 CDS ybaJ NC_006905.1 572746 573120 R hypothetical protein complement(572746..573120) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215504.1 CDS acrB NC_006905.1 573616 576765 R IPR001036: Acriflavin resistance protein; acridine efflux system protein complement(573616..576765) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215505.1 CDS acrA NC_006905.1 576788 577873 R acridine efflux pump complement(576788..577873) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215506.2 CDS aefA NC_006905.1 578895 582257 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 578895..582257 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215507.1 CDS SC0520 NC_006905.1 582299 583222 R transposase complement(582299..583222) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215508.1 CDS ybaM NC_006905.1 583292 583459 R hypothetical protein complement(583292..583459) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215509.1 CDS priC NC_006905.1 583473 584000 R PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; primosomal replication protein N'' complement(583473..584000) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215510.1 CDS ybaN NC_006905.1 584051 584446 D hypothetical protein 584051..584446 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215511.1 CDS apt NC_006905.1 584599 585150 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 584599..585150 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215512.1 CDS dnaX NC_006905.1 585264 587192 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 585264..587192 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215513.1 CDS ybaB NC_006905.1 587238 587567 D hypothetical protein 587238..587567 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215514.1 CDS recR NC_006905.1 587567 588172 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 587567..588172 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215515.1 CDS htpG NC_006905.1 588259 590157 D molecular chaperone; heat shock protein 90 588259..590157 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215516.1 CDS adk NC_006905.1 590399 591043 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 590399..591043 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215517.1 CDS SC0530 NC_006905.1 591056 591262 D hypothetical protein 591056..591262 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215518.1 CDS hemH NC_006905.1 591272 592234 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 591272..592234 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215519.1 CDS aes NC_006905.1 592231 593202 R IPR000379: Esterase/lipase/thioesterase; IPR002168: Lipolytic enzyme; acetyl esterase complement(592231..593202) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215520.1 CDS gsk NC_006905.1 593310 594659 D IPR002173: Carbohydrate kinase, PfkB; inosine-guanosine kinase 593310..594659 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215521.1 CDS ybaL NC_006905.1 594708 596384 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; cation:proton antiport protein complement(594708..596384) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215522.1 CDS fsr NC_006905.1 596599 597819 R IPR007114: Major facilitator superfamily; MFS family transporter complement(596599..597819) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215523.1 CDS ushA NC_006905.1 597992 599644 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 597992..599644 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215524.1 CDS ybaK NC_006905.1 599761 600240 R hypothetical protein complement(599761..600240) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215525.1 CDS ybaP NC_006905.1 600442 601236 R hypothetical protein complement(600442..601236) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215526.1 CDS copA NC_006905.1 602302 604803 R IPR000150: Cof protein; IPR000695: H+ transporting ATPase, proton pump; IPR001756: Copper-transporting ATPase;IPR001757: ATPase, E1-E2 type;IPR006121: Heavy metal transport/detoxification protein;IPR006191: Heavy metal binding; copper exporting ATPase complement(602302..604803) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215527.1 CDS cueR NC_006905.1 604913 605329 D activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 604913..605329 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215528.1 CDS ybbJ NC_006905.1 605330 605782 R hypothetical protein complement(605330..605782) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215529.1 CDS ybbK NC_006905.1 605779 606696 R IPR001972: Stomatin; hypothetical protein complement(605779..606696) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215530.1 CDS ybbL NC_006905.1 606843 607520 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter ATP-binding protein 606843..607520 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215531.1 CDS ybbM NC_006905.1 607507 608286 D hypothetical protein 607507..608286 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215532.1 CDS ybbN NC_006905.1 608372 609226 R IPR006663: Thioredoxin domain 2; thioredoxin protein complement(608372..609226) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215533.1 CDS ybbO NC_006905.1 609286 610056 R IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; short chain dehydrogenase complement(609286..610056) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215534.1 CDS tesA NC_006905.1 610211 610858 R IPR001087: Lipolytic enzyme, G-D-S-L family; IPR008265: Lipolytic enzyme, G-D-S-L, active site; multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 complement(610211..610858) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215535.1 CDS ybbA NC_006905.1 610796 611482 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR006073: GTP1/OBG; ABC transporter ATP-binding protein 610796..611482 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215536.1 CDS ybbP NC_006905.1 611479 613893 D hypothetical protein 611479..613893 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215537.1 CDS SC0550 NC_006905.1 614079 615212 D outer membrane protein 614079..615212 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215538.1 CDS sfbA NC_006905.1 615469 616299 D ABC-type transport system ATPase/cell division protein 615469..616299 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215539.1 CDS sfbB NC_006905.1 616336 617352 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC-type transport system ATPase/cell division protein 616336..617352 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215540.1 CDS sfbC NC_006905.1 617345 618004 D IPR000515: Binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 617345..618004 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215541.1 CDS ybbB NC_006905.1 618043 619137 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(618043..619137) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215542.1 CDS ybbS NC_006905.1 619171 620133 R activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS complement(619171..620133) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215543.1 CDS allA NC_006905.1 620360 620842 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 620360..620842 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215544.1 CDS allR NC_006905.1 620921 621739 D regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 620921..621739 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215545.1 CDS gip NC_006905.1 623626 624402 D IPR000560: Histidine acid phosphatase; hydroxypyruvate isomerase 623626..624402 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215546.1 CDS glxR NC_006905.1 624503 625381 D IPR002204: 3-hydroxyisobutyrate dehydrogenase; tartronic semialdehyde reductase 624503..625381 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215547.1 CDS yhjE NC_006905.1 625447 626694 D IPR007114: Major facilitator superfamily; permease 625447..626694 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215548.1 CDS allP NC_006905.1 626790 628244 D IPR001248: Permease for cytosine/purines, uracil, thiamine, allantoin; allantoin permease 626790..628244 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215549.1 CDS allB NC_006905.1 628323 629684 D Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 628323..629684 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215550.1 CDS ybbY NC_006905.1 629743 631041 D IPR000531: TonB-dependent receptor protein; purine permease YbbY 629743..631041 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215551.1 CDS glxK NC_006905.1 631064 632212 D glycerate kinase 631064..632212 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215552.1 CDS ylbA NC_006905.1 632292 633077 R hypothetical protein complement(632292..633077) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215553.1 CDS allC NC_006905.1 633088 634323 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(633088..634323) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215554.1 CDS allD NC_006905.1 634345 635394 R IPR001064: Beta and gamma crystallin; ureidoglycolate dehydrogenase complement(634345..635394) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215555.1 CDS fdrA NC_006905.1 635710 637374 D multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 635710..637374 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215556.1 CDS ylbE NC_006905.1 637384 638643 D hypothetical protein 637384..638643 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215557.1 CDS ylbF NC_006905.1 638655 639464 D hypothetical protein 638655..639464 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215558.1 CDS arcC NC_006905.1 639468 640361 D forms a homodimer; may be used to synthesize carbomyl phosphate from ATP and carbamate; carbamate kinase 639468..640361 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215559.1 CDS purK NC_006905.1 640402 641469 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(640402..641469) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215560.1 CDS purE NC_006905.1 641466 641975 R Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(641466..641975) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215561.1 CDS lpxH NC_006905.1 642093 642815 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(642093..642815) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215562.1 CDS ppiB NC_006905.1 642818 643312 R IPR002130: Peptidyl-prolyl cis-trans isomerase, cyclophilin type; peptidyl-prolyl cis-trans isomerase B complement(642818..643312) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215563.1 CDS cysS NC_006905.1 643485 644870 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 643485..644870 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215564.1 CDS SC0577 NC_006905.1 644914 645738 R outer membrane protein complement(644914..645738) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215565.1 CDS SC0578 NC_006905.1 645735 646172 R inner membrane protein complement(645735..646172) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215566.1 CDS ybcI NC_006905.1 646165 646710 R membrane-bound metal-dependent hydrolase complement(646165..646710) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215567.2 CDS ybcJ NC_006905.1 646837 647049 R IPR002942: RNA-binding S4; hypothetical protein complement(646837..647049) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215568.1 CDS folD NC_006905.1 647051 647917 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(647051..647917) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215569.1 CDS fimA NC_006905.1 648395 649018 D major type 1 subunit fimbrin (pilin) 648395..649018 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215570.1 CDS fimI NC_006905.1 649094 649627 D fimbrial protein 649094..649627 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215572.1 CDS fimD NC_006905.1 651732 654350 D IPR000015: Fimbrial biogenesis outer membrane usher protein; outer membrane usher protein 651732..654350 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215573.1 CDS fimH NC_006905.1 654365 655372 D minor fimbrial subunit 654365..655372 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215574.1 CDS fimF NC_006905.1 655382 655900 D fimbrial protein 655382..655900 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215575.1 CDS fimZ NC_006905.1 655946 656671 R activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ complement(655946..656671) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215576.1 CDS fimY NC_006905.1 657182 657904 R IPR000792: Bacterial regulatory protein, LuxR family; regulatory protein complement(657182..657904) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215577.1 CDS fimW NC_006905.1 658397 658993 R IPR000792: Bacterial regulatory protein, LuxR family; fimbrial protein complement(658397..658993) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215578.1 CDS SC0591 NC_006905.1 658967 659185 D hypothetical protein 658967..659185 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215579.1 CDS rfbI NC_006905.1 660997 661359 D glycosyl translocase 660997..661359 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215580.1 CDS yfdH NC_006905.1 661356 662282 D IPR001173: Glycosyl transferase, family 2; glycosyltransferase 661356..662282 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215581.1 CDS SC0594 NC_006905.1 662279 663865 D hypothetical protein 662279..663865 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215582.1 CDS SC0595 NC_006905.1 665193 666647 R hypothetical protein complement(665193..666647) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215583.1 CDS yfdH NC_006905.1 666637 667563 R IPR001173: Glycosyl transferase, family 2; glycosyltransferase complement(666637..667563) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215584.1 CDS rfbI NC_006905.1 667560 667922 R glycosyl translocase complement(667560..667922) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215585.1 CDS SC0598 NC_006905.1 668351 668575 D IPR000504: RNA-binding region RNP-1 (RNA recognition motif); hypothetical protein 668351..668575 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215586.1 CDS cusS NC_006905.1 668790 669119 R IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensor protein complement(668790..669119) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215587.1 CDS ykgD NC_006905.1 669410 670264 R IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator complement(669410..670264) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215588.1 CDS ykgC NC_006905.1 670480 671805 D Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 670480..671805 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215589.1 CDS ykgI NC_006905.1 671962 672198 D hypothetical protein 671962..672198 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215590.1 CDS ykgB NC_006905.1 672211 672771 D hypothetical protein 672211..672771 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215591.1 CDS SC0604 NC_006905.1 672850 674025 R hypothetical protein complement(672850..674025) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215592.1 CDS pheP NC_006905.1 674351 675745 D IPR002293: Amino acid/polyamine transporter family I; IPR004840: Amino acid permease; phenylalanine transporter 674351..675745 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215593.1 CDS ybdG NC_006905.1 675787 677034 R hypothetical protein complement(675787..677034) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215594.1 CDS SC0607 NC_006905.1 677064 677246 D hypothetical protein 677064..677246 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215595.1 CDS apeE NC_006905.1 677345 679315 D IPR001087: Lipolytic enzyme, G-D-S-L family; outer membrane N-acetyl phenylalanine beta-naphthyl ester-cleaving esterase 677345..679315 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215596.1 CDS nfnB NC_006905.1 679581 680234 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase complement(679581..680234) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215597.1 CDS ybdF NC_006905.1 680331 680699 R hypothetical protein complement(680331..680699) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215598.1 CDS SC0611 NC_006905.1 680699 681280 R IPR001647: Bacterial regulatory protein TetR, HTH motif; regulatory protein complement(680699..681280) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215599.1 CDS ramA NC_006905.1 681569 681910 D IPR000005: Helix-turn-helix, AraC type; regulatory protein 681569..681910 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215600.1 CDS ybdJ NC_006905.1 681916 682164 R hypothetical protein complement(681916..682164) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215601.1 CDS ybdK NC_006905.1 682231 683349 R ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase complement(682231..683349) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215602.1 CDS entD NC_006905.1 683361 684065 R IPR003542: Enterobactin synthetase, component D; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex complement(683361..684065) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215603.1 CDS fepA NC_006905.1 684111 686366 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(684111..686366) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215604.1 CDS fes NC_006905.1 686546 687769 D IPR000379: Esterase/lipase/thioesterase; enterobactin/ferric enterobactin esterase 686546..687769 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215605.1 CDS ybdZ NC_006905.1 687800 688018 D hypothetical protein 687800..688018 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215606.1 CDS entF NC_006905.1 688015 691899 D with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 688015..691899 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215607.1 CDS fepE NC_006905.1 692122 693285 D part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 692122..693285 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215608.1 CDS fepC NC_006905.1 693339 694133 R with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein complement(693339..694133) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215609.1 CDS fepG NC_006905.1 694130 695122 R with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease complement(694130..695122) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215610.1 CDS fepD NC_006905.1 695119 696126 R with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein complement(695119..696126) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215611.1 CDS ybdA NC_006905.1 696237 697481 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 696237..697481 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215612.1 CDS fepB NC_006905.1 697544 698500 R with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein complement(697544..698500) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215613.2 CDS entC NC_006905.1 698809 699984 D synthesizes isochorismate acid from chorismate; isochorismate synthase 698809..699984 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215614.1 CDS entE NC_006905.1 699994 701604 D bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 699994..701604 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215615.1 CDS entB NC_006905.1 701618 702475 D IPR003881: Isochorismatase; IPR006163: Phosphopantetheine-binding domain; 2,3-dihydro-2,3-dihydroxybenzoate synthetase 701618..702475 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215616.1 CDS entA NC_006905.1 702475 703230 D catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 702475..703230 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215617.1 CDS ybdB NC_006905.1 703233 703646 D hypothetical protein 703233..703646 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215618.1 CDS cstA NC_006905.1 703828 705927 D carbon starvation protein 703828..705927 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215619.1 CDS ybdD NC_006905.1 705991 706188 D hypothetical protein 705991..706188 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215620.1 CDS ybdH NC_006905.1 706224 707312 R member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein complement(706224..707312) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215621.1 CDS ybdL NC_006905.1 707403 708599 D catalyzes the transfer of an amino moiety; aminotransferase 707403..708599 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215622.1 CDS ybdM NC_006905.1 708600 709217 R hypothetical protein complement(708600..709217) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215623.1 CDS ybdN NC_006905.1 709190 710425 R bifunctional 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase/FAD synthetase complement(709190..710425) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215624.1 CDS ybdO NC_006905.1 710591 711493 R IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator complement(710591..711493) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215625.1 CDS dsbG NC_006905.1 711810 712556 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(711810..712556) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215626.1 CDS ahpC NC_006905.1 712997 713560 D with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase 712997..713560 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215627.1 CDS ahpF NC_006905.1 713802 715367 D IPR000103: Pyridine nucleotide-disulphide oxidoreductase, class-II; IPR000759: Adrenodoxin reductase; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I;IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;IPR003042: Aromatic-ring hydroxylase;IPR008255: Pyridine nucleotide-disulphide oxidoreductase, class-II, active site; alkyl hydroperoxide reductase 713802..715367 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215628.1 CDS SC0641 NC_006905.1 715700 716260 D hypothetical protein 715700..716260 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215629.1 CDS yyaE NC_006905.1 716253 718532 D oxidoreductase 716253..718532 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215630.1 CDS dmsB NC_006905.1 718529 719086 D IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; hydrogenase 718529..719086 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215631.1 CDS ynfH NC_006905.1 719086 719853 D hydrogenase 719086..719853 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215632.1 CDS ybdQ NC_006905.1 719921 720349 R IPR006015: Universal stress protein (Usp); universal stress protein UspA and related nucleotide-binding protein complement(719921..720349) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215633.1 CDS rnk NC_006905.1 721894 722304 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator complement(721894..722304) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215634.1 CDS citT NC_006905.1 723456 724919 R DASS family citrate:succinate transporter complement(723456..724919) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215635.1 CDS citG NC_006905.1 724957 725853 R catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase complement(724957..725853) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215636.1 CDS citX NC_006905.1 725825 726376 R 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase complement(725825..726376) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215637.1 CDS citF NC_006905.1 726380 727909 R bifunctional; citrate lyase subunit alpha/citrate-ACP transferase complement(726380..727909) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215638.1 CDS citE NC_006905.1 727919 728827 R citrate lyase subunit beta complement(727919..728827) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215639.1 CDS citD NC_006905.1 728824 729120 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(728824..729120) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215640.1 CDS citC NC_006905.1 729117 730193 R IPR000182: GCN5-related N-acetyltransferase; IPR004821: Cytidyltransferase-related domain; IPR005216: Citrate lyase ligase; citrate lyase synthetase complement(729117..730193) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215641.1 CDS SC0654 NC_006905.1 730386 730568 D hypothetical protein 730386..730568 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215642.1 CDS dpiB NC_006905.1 730578 732239 D IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensory histidine kinase in two-component regulatory system with DpiA, regulation of cit operon and plasmid inheritance genes 730578..732239 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215643.1 CDS dpiA NC_006905.1 732340 732888 D regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 732340..732888 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215644.1 CDS dcuC NC_006905.1 732942 734327 R responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC complement(732942..734327) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215645.2 CDS cspE NC_006905.1 735462 735671 D member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 735462..735671 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215646.1 CDS ccrB NC_006905.1 735729 736112 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(735729..736112) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215647.1 CDS ybeM NC_006905.1 736203 736991 D IPR001110: Protein of unknown function UPF0012; IPR003010: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; hydrolase 736203..736991 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215648.1 CDS tatE NC_006905.1 737120 737323 D TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase E 737120..737323 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215649.1 CDS lipA NC_006905.1 737409 738374 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(737409..738374) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215650.1 CDS ybeF NC_006905.1 738580 739533 R IPR000847: Bacterial regulatory protein LysR, HTH motif; DNA-binding transcriptional regulator complement(738580..739533) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215651.1 CDS lipB NC_006905.1 739835 740410 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(739835..740410) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215652.1 CDS ybeD NC_006905.1 740576 740872 R hypothetical protein complement(740576..740872) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215653.1 CDS dacA NC_006905.1 740948 742159 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase complement(740948..742159) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215654.1 CDS SC0667 NC_006905.1 742179 742328 D hypothetical protein 742179..742328 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215655.1 CDS rlpA NC_006905.1 742299 743444 R rare lipoprotein A complement(742299..743444) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215656.1 CDS mrdB NC_006905.1 743455 744567 R IPR001182: Cell cycle protein; cell wall shape-determining protein complement(743455..744567) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215657.1 CDS mrdA NC_006905.1 744570 746471 R penicillin-binding protein 2 complement(744570..746471) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215658.1 CDS ybeA NC_006905.1 746502 746969 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(746502..746969) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215659.1 CDS ybeB NC_006905.1 746973 747290 R hypothetical protein complement(746973..747290) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215660.1 CDS cobC NC_006905.1 747619 748227 R IPR001345: Phosphoglycerate/bisphosphoglycerate mutase; alpha ribazole-5'-P phosphatase complement(747619..748227) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215661.1 CDS cobD NC_006905.1 748324 749418 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 748324..749418 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215662.1 CDS nadD NC_006905.1 749393 750034 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(749393..750034) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215663.1 CDS holA NC_006905.1 750036 751067 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(750036..751067) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215664.1 CDS rlpB NC_006905.1 751067 751657 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB complement(751067..751657) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215665.1 CDS leuS NC_006905.1 751672 754347 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(751672..754347) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215666.1 CDS uxaA NC_006905.1 754542 754832 D hydrolase N-terminus 754542..754832 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215667.1 CDS kdg NC_006905.1 756068 757021 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 756068..757021 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215668.1 CDS yqiR NC_006905.1 757089 759017 D IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; sigma-54 dependent transcriptional regulator 757089..759017 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215669.1 CDS ybeL NC_006905.1 759110 759583 D hypothetical protein 759110..759583 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215670.1 CDS ybeQ NC_006905.1 759622 760617 R hypothetical protein complement(759622..760617) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215671.1 CDS ybeR NC_006905.1 760742 761449 D hypothetical protein 760742..761449 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215672.1 CDS ybeS NC_006905.1 761446 762879 D IPR001623: Heat shock protein DnaJ, N-terminal; DnaJ family molecular chaperone 761446..762879 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215673.1 CDS ybeU NC_006905.1 762891 763586 D hypothetical protein 762891..763586 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215674.1 CDS SC0687 NC_006905.1 765068 766747 R IPR001023: Heat shock protein Hsp70; molecular chaperone DnaK complement(765068..766747) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215675.1 CDS SC0688 NC_006905.1 766823 768061 R hypothetical protein complement(766823..768061) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215676.1 CDS rihA NC_006905.1 768093 769028 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 complement(768093..769028) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215677.1 CDS gltL NC_006905.1 769145 769870 R IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; glutamate/aspartate ABC transporter ATP-binding protein complement(769145..769870) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215678.1 CDS gltK NC_006905.1 769870 770544 R glutamate/aspartate ABC transporter complement(769870..770544) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215679.1 CDS gltJ NC_006905.1 770544 771284 R glutamate/aspartate ABC transporter complement(770544..771284) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215680.1 CDS gltI NC_006905.1 771443 772369 R IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; glutamate and aspartate transporter subunit complement(771443..772369) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215681.1 CDS lnt NC_006905.1 772706 774295 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(772706..774295) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215682.1 CDS ybeX NC_006905.1 774264 775142 R IPR000644: CBS domain; hypothetical protein complement(774264..775142) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215683.1 CDS ybeY NC_006905.1 775300 775773 R IPR002036: Protein of unknown function UPF0054; metalloprotease complement(775300..775773) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215684.1 CDS phoL NC_006905.1 775770 776855 R IPR003714: PhoH-like protein; phosphate starvation-inducible protein, ATP-binding complement(775770..776855) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215685.1 CDS miaB NC_006905.1 777021 778487 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(777021..778487) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215686.1 CDS ubiF NC_006905.1 778589 779764 D catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 778589..779764 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215688.1 CDS asnB NC_006905.1 780825 782489 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(780825..782489) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215689.1 CDS nagD NC_006905.1 782779 783531 R UMP phosphatase complement(782779..783531) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215690.1 CDS nagC NC_006905.1 783578 784798 R IPR000600: ROK family; N-acetylglucosamine operon transcriptional repressor complement(783578..784798) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215691.1 CDS nagA NC_006905.1 784803 785957 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(784803..785957) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215692.1 CDS nagB NC_006905.1 786017 786817 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(786017..786817) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215693.1 CDS nagE NC_006905.1 787144 789096 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunit IIABC 787144..789096 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215694.1 CDS glnS NC_006905.1 789307 790974 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 789307..790974 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215695.1 CDS ybfM NC_006905.1 791426 792832 D outer membrane protein 791426..792832 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215696.1 CDS ybfN NC_006905.1 792882 793214 D lipoprotein 792882..793214 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215697.1 CDS citA NC_006905.1 793263 794567 R IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; citrate-proton symporter complement(793263..794567) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215698.1 CDS frdA NC_006905.1 795744 797147 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(795744..797147) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215699.1 CDS nacR NC_006905.1 797245 798171 R LysR family transcriptional regulator complement(797245..798171) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215700.1 CDS fur NC_006905.1 798286 798738 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(798286..798738) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215701.1 CDS fldA NC_006905.1 799020 799550 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(799020..799550) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215702.1 CDS ybfE NC_006905.1 799701 799994 R LexA regulated protein complement(799701..799994) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215703.1 CDS ybfF NC_006905.1 800128 800898 R IPR000379: Esterase/lipase/thioesterase; IPR003089: Alpha/beta hydrolase; hypothetical protein complement(800128..800898) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215704.2 CDS seqA NC_006905.1 801083 801625 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 801083..801625 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215705.1 CDS pgm NC_006905.1 801650 803290 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 801650..803290 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215706.1 CDS SC0719 NC_006905.1 803405 803890 R hypothetical protein complement(803405..803890) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215707.1 CDS potE NC_006905.1 803955 805274 R catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter complement(803955..805274) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215708.1 CDS speF NC_006905.1 805271 807469 R IPR000310: Orn/Lys/Arg decarboxylase, major region; ornithine decarboxylase complement(805271..807469) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215709.1 CDS kdpE NC_006905.1 808231 808908 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE complement(808231..808908) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215710.1 CDS kdpD NC_006905.1 808905 811589 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD complement(808905..811589) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215711.1 CDS kdpC NC_006905.1 811586 812170 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(811586..812170) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215712.1 CDS kdpB NC_006905.1 812179 814227 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(812179..814227) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215713.1 CDS kdpA NC_006905.1 814248 815927 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(814248..815927) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215714.1 CDS kdpF NC_006905.1 815927 816016 R one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit F complement(815927..816016) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215715.1 CDS phrB NC_006905.1 816668 818008 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 816668..818008 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215716.1 CDS ybgH NC_006905.1 818129 819844 R IPR000109: TGF-beta receptor, type I/II extracellular region; IPR007114: Major facilitator superfamily; POT family transport protein complement(818129..819844) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215717.1 CDS ybgI NC_006905.1 819939 820682 D hydrolase-oxidase 819939..820682 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215718.1 CDS ybgJ NC_006905.1 820698 821354 D hypothetical protein 820698..821354 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215719.1 CDS ybgK NC_006905.1 821348 822280 D hypothetical protein 821348..822280 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215720.1 CDS ybgL NC_006905.1 822225 823004 D LamB/YcsF family protein 822225..823004 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215721.1 CDS nei NC_006905.1 823126 823917 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 823126..823917 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215722.1 CDS abrB NC_006905.1 823972 825018 R IPR002155: Thiolase; hypothetical protein complement(823972..825018) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215723.1 CDS gltA NC_006905.1 825155 826438 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(825155..826438) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215724.1 CDS sdhC NC_006905.1 827192 827581 D IPR000701: Succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 large membrane subunit 827192..827581 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215725.1 CDS sdhA NC_006905.1 827922 829688 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 827922..829688 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215726.1 CDS sdhB NC_006905.1 829702 830421 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 829702..830421 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215727.1 CDS sucA NC_006905.1 830947 833748 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 830947..833748 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215728.1 CDS sucB NC_006905.1 833763 834971 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 833763..834971 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215729.1 CDS sucC NC_006905.1 835113 836279 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 835113..836279 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215730.1 CDS sucD NC_006905.1 836279 837148 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 836279..837148 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215731.1 CDS cydA NC_006905.1 838731 840299 D cytochrome d terminal oxidase, polypeptide subunit I 838731..840299 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215732.1 CDS cydB NC_006905.1 840315 841454 D cytochrome d terminal oxidase polypeptide subunit II 840315..841454 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215733.1 CDS ybgT NC_006905.1 841469 841582 D hypothetical protein 841469..841582 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215734.1 CDS ybgE NC_006905.1 841582 841875 D hypothetical protein 841582..841875 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215735.1 CDS ybgC NC_006905.1 842104 842508 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase 842104..842508 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215736.1 CDS tolQ NC_006905.1 842505 843197 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 842505..843197 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215737.1 CDS tolR NC_006905.1 843201 843629 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 843201..843629 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215738.1 CDS tolA NC_006905.1 843694 844854 D inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 843694..844854 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215739.1 CDS tolB NC_006905.1 844978 846270 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 844978..846270 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215740.1 CDS pal NC_006905.1 846305 846829 D IPR006664: Bacterial outer membrane protein; IPR006665: OmpA/MotB domain; IPR006690: OmpA-like domain; peptidoglycan-associated outer membrane lipoprotein 846305..846829 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215741.1 CDS ybgF NC_006905.1 846839 847627 D periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 846839..847627 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215742.1 CDS nadA NC_006905.1 848878 849921 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 848878..849921 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215743.1 CDS pnuC NC_006905.1 849946 850665 D NMN family, nucleoside/purine/pyrimidine transporter 849946..850665 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215744.1 CDS ybgR NC_006905.1 850662 851600 R involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB complement(850662..851600) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215745.1 CDS ybgS NC_006905.1 851711 852097 R homeobox protein complement(851711..852097) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215746.2 CDS aroG NC_006905.1 852417 853469 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 852417..853469 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215747.1 CDS fumB NC_006905.1 853563 854108 R fumarate hydratase class I anaerobic complement(853563..854108) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215748.1 CDS fumA NC_006905.1 854123 854968 R Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase complement(854123..854968) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215749.1 CDS ymbI NC_006905.1 855098 855988 D IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 855098..855988 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215750.1 CDS yfbS NC_006905.1 857196 858464 D cation transporter 857196..858464 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215751.1 CDS oadG NC_006905.1 858514 858753 D catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 858514..858753 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215752.1 CDS oadA NC_006905.1 858769 860544 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 858769..860544 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215753.1 CDS oadB NC_006905.1 860557 861858 D oxalacetate decarboxylase subunit beta 860557..861858 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215754.1 CDS SC0767 NC_006905.1 862028 862675 D hypothetical protein 862028..862675 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215755.1 CDS SC0768 NC_006905.1 863055 864134 D IPR000522: FecCD transport family; IPR001851: Bacterial inner-membrane translocator; ABC transporter 863055..864134 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215756.1 CDS fhuC NC_006905.1 864134 864910 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC-type cobalamin/Fe3+-siderophores transport system, ATPase 864134..864910 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215757.1 CDS gpmA NC_006905.1 865001 865753 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(865001..865753) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215758.1 CDS galM NC_006905.1 865977 867017 R catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase complement(865977..867017) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215759.1 CDS galK NC_006905.1 867011 868159 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(867011..868159) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215760.1 CDS galT NC_006905.1 868162 869208 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(868162..869208) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215761.1 CDS galE NC_006905.1 869219 870235 R UDP-galactose-4-epimerase complement(869219..870235) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215762.1 CDS SC0775 NC_006905.1 870458 871366 R inner membrane protein complement(870458..871366) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215763.2 CDS modF NC_006905.1 871537 873012 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum transport ATP-binding protein ModF complement(871537..873012) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215764.1 CDS modE NC_006905.1 873080 873868 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE complement(873080..873868) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215765.1 CDS ybhT NC_006905.1 873895 874146 D hypothetical protein 873895..874146 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215766.1 CDS modA NC_006905.1 874302 875075 D with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 874302..875075 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215767.1 CDS modB NC_006905.1 875075 875764 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 875075..875764 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215768.1 CDS modC NC_006905.1 875767 876825 D Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 875767..876825 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215769.1 CDS ybhA NC_006905.1 876826 877644 R YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase complement(876826..877644) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215770.1 CDS ybhE NC_006905.1 877808 878803 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 877808..878803 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215771.1 CDS ybhC NC_006905.1 878947 880230 R outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase complement(878947..880230) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215772.2 CDS hutI NC_006905.1 880468 881691 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 880468..881691 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215773.1 CDS hutG NC_006905.1 881688 882629 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 881688..882629 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215774.1 CDS hutC NC_006905.1 882722 883399 D IPR000524: Bacterial regulatory protein, GntR family; histidine utilization repressor 882722..883399 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215775.1 CDS hutC NC_006905.1 883596 885281 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 883596..885281 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215776.1 CDS hutH NC_006905.1 885283 886803 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 885283..886803 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215777.1 CDS ybhB NC_006905.1 886888 887364 R YbhB; similar to rat and human kinase inhibitory proteins; kinase inhibitor protein complement(886888..887364) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215778.2 CDS bioA NC_006905.1 887422 888711 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(887422..888711) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215779.1 CDS bioB NC_006905.1 888798 889838 D biotin synthetase 888798..889838 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215780.1 CDS bioF NC_006905.1 889835 890992 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 889835..890992 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215781.1 CDS bioC NC_006905.1 890976 891731 D methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; biotin biosynthesis protein BioC 890976..891731 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215782.1 CDS bioD NC_006905.1 891724 892410 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 891724..892410 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215783.1 CDS uvrB NC_006905.1 893061 895082 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 893061..895082 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215784.1 CDS SC0797 NC_006905.1 895391 895564 D hypothetical protein 895391..895564 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215785.1 CDS slrP NC_006905.1 895572 897836 D hypothetical protein 895572..897836 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215786.1 CDS ybhK NC_006905.1 897931 898839 R hypothetical protein complement(897931..898839) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215787.1 CDS moaA NC_006905.1 899203 900225 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 899203..900225 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215788.1 CDS moaB NC_006905.1 900247 900759 D IPR001453: Molybdenum cofactor biosynthesis protein; IPR008284: Molybdenum cofactor biosynthesis protein, N-terminal; molybdopterin biosynthesis, protein B 900247..900759 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215789.1 CDS moaC NC_006905.1 900762 901247 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 900762..901247 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215790.1 CDS moaD NC_006905.1 901240 901485 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 901240..901485 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215791.1 CDS moaE NC_006905.1 901487 901939 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 901487..901939 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215792.1 CDS ybhL NC_006905.1 901987 902691 D permease 901987..902691 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215793.1 CDS ybhM NC_006905.1 902836 903543 D integral membrane protein 902836..903543 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215794.1 CDS SC0807 NC_006905.1 903567 904175 D inner membrane protein 903567..904175 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215795.1 CDS ybhN NC_006905.1 904746 905708 R hypothetical protein complement(904746..905708) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215796.1 CDS ybhO NC_006905.1 905708 906949 R IPR001736: Phospholipase D/Transphosphatidylase; cardiolipin synthase 2 complement(905708..906949) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215797.1 CDS ybhP NC_006905.1 906946 907704 R hypothetical protein complement(906946..907704) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215798.1 CDS ybhQ NC_006905.1 907837 908247 D hypothetical protein 907837..908247 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215799.1 CDS ybhR NC_006905.1 908209 909315 R IPR000412: ABC transporter family 2; ABC transporter membrane protein complement(908209..909315) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215800.1 CDS ybhS NC_006905.1 909431 910561 R ABC transporter membrane protein complement(909431..910561) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215801.1 CDS ybhF NC_006905.1 910554 912290 R IPR001553: RecA bacterial DNA recombination protein; IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; multidrug ABC transporter ATPase complement(910554..912290) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215802.1 CDS ybhG NC_006905.1 912283 913278 R hypothetical protein complement(912283..913278) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215803.1 CDS ybiH NC_006905.1 913278 913952 R IPR001647: Bacterial regulatory protein TetR, HTH motif; DNA-binding transcriptional regulator complement(913278..913952) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215804.1 CDS rhlE NC_006905.1 914182 915543 D this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 914182..915543 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215805.1 CDS dinG NC_006905.1 915751 917895 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 915751..917895 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215806.1 CDS ybiB NC_006905.1 917925 918899 D glycosyl transferase family protein 917925..918899 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215807.1 CDS ybiJ NC_006905.1 919055 919426 R hypothetical protein complement(919055..919426) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215808.1 CDS ybiI NC_006905.1 919599 919865 R IPR000962: Zn-finger, prokaryotic DksA/TraR C4 type; hypothetical protein complement(919599..919865) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215809.1 CDS ybiO NC_006905.1 920994 923216 R hypothetical protein complement(920994..923216) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215810.1 CDS glnQ NC_006905.1 923335 924057 R similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein complement(923335..924057) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215811.1 CDS glnP NC_006905.1 924054 924713 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease complement(924054..924713) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215812.1 CDS glnH NC_006905.1 924857 925603 R similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein complement(924857..925603) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215813.1 CDS dps NC_006905.1 926080 926583 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps complement(926080..926583) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215814.1 CDS SC0827 NC_006905.1 926699 926872 R hypothetical protein complement(926699..926872) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215815.1 CDS ybiF NC_006905.1 926886 927773 R threonine and homoserine efflux system complement(926886..927773) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215816.1 CDS ompX NC_006905.1 928127 928642 D OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 928127..928642 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215817.1 CDS ybiP NC_006905.1 928710 930284 R hypothetical protein complement(928710..930284) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215818.1 CDS SC0831 NC_006905.1 930549 930677 R hypothetical protein complement(930549..930677) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215819.1 CDS mntR NC_006905.1 930863 931336 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 930863..931336 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215820.1 CDS ybiR NC_006905.1 931333 932445 D hypothetical protein 931333..932445 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215821.1 CDS ybiS NC_006905.1 932489 933409 R hypothetical protein complement(932489..933409) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215822.1 CDS ybiT NC_006905.1 933628 935223 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter ATPase 933628..935223 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215823.1 CDS ybiU NC_006905.1 935345 936610 R hypothetical protein complement(935345..936610) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215824.1 CDS ybiV(1) NC_006905.1 936872 937681 D IPR000150: Cof protein; HAD family hydrolase 936872..937681 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215825.1 CDS pflF NC_006905.1 937759 940191 R IPR001150: Formate C-acetyltransferase glycine radical; pyruvate formate lyase complement(937759..940191) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215826.1 CDS pflE NC_006905.1 940197 941096 R IPR001989: Radical-activating enzyme; pyruvate formate lyase activating enzyme complement(940197..941096) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215827.1 CDS moeB NC_006905.1 941374 942123 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(941374..942123) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215828.1 CDS moeA NC_006905.1 942123 943358 R is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA complement(942123..943358) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215829.1 CDS ybiK NC_006905.1 943562 944503 D L-asparaginase 943562..944503 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215830.1 CDS yliA NC_006905.1 944415 946385 D with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 944415..946385 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215831.1 CDS yliB NC_006905.1 946418 947956 D IPR000914: Bacterial extracellular solute-binding protein, family 5; ABC transporter substrate-binding protein 946418..947956 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215832.1 CDS yliC NC_006905.1 948083 948937 D IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC transporter substrate-binding protein 948083..948937 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215833.1 CDS yliD NC_006905.1 948940 949851 D IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC transporter inner membrane component 948940..949851 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215834.1 CDS rimO NC_006905.1 949942 951267 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase complement(949942..951267) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215835.1 CDS etfB NC_006905.1 953021 953875 D IPR000049: Electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 953021..953875 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215836.1 CDS etfA NC_006905.1 953886 954833 D IPR001308: Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein alpha subunit 953886..954833 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215837.1 CDS SC0850 NC_006905.1 954866 955078 D hypothetical protein 954866..955078 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215838.1 CDS acdC NC_006905.1 955128 956291 D IPR006089: Acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 955128..956291 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215839.1 CDS etfD NC_006905.1 956740 958425 D IPR000205: NAD-binding site; IPR003042: Aromatic-ring hydroxylase; dehydrogenase 956740..958425 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215840.1 CDS TnpR NC_006905.1 958616 959824 R transposase of Tn10 complement(958616..959824) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215841.1 CDS ywfK NC_006905.1 959928 960575 R LysR family transcriptional regulator complement(959928..960575) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215842.1 CDS yliI NC_006905.1 961697 962377 D IPR003220: Insertion element protein; dehydrogenase 961697..962377 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215843.1 CDS yliJ NC_006905.1 962374 963000 R IPR004045: Glutathione S-transferase, N-terminal; IPR004046: Glutathione S-transferase, C-terminal; glutathione S-transferase complement(962374..963000) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215844.1 CDS dacC NC_006905.1 963244 964446 D penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 963244..964446 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215845.1 CDS deoR NC_006905.1 964491 965249 R IPR001034: Bacterial regulatory protein, DeoR family; DNA-binding transcriptional repressor DeoR complement(964491..965249) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215846.1 CDS ybjG NC_006905.1 965321 965995 R IPR000326: PA-phosphatase related phosphoesterase; undecaprenyl pyrophosphate phosphatase complement(965321..965995) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215847.1 CDS mdfA NC_006905.1 966242 967474 D IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; multidrug translocase 966242..967474 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215848.1 CDS ybjI NC_006905.1 967528 968343 R IPR000150: Cof protein; hypothetical protein complement(967528..968343) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215849.1 CDS ybjJ NC_006905.1 968340 969551 R IPR007114: Major facilitator superfamily; hypothetical protein complement(968340..969551) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215850.1 CDS ybjK NC_006905.1 969719 970339 D IPR001647: Bacterial regulatory protein TetR, HTH motif; paral regulator 969719..970339 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215851.1 CDS ybjL NC_006905.1 970456 972141 R hypothetical protein complement(970456..972141) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215852.1 CDS ybjM NC_006905.1 972412 972789 D hypothetical protein 972412..972789 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215853.1 CDS grxA NC_006905.1 972821 973084 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(972821..973084) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215854.1 CDS ybjC NC_006905.1 973254 973544 D YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 973254..973544 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215855.1 CDS rimK NC_006905.1 974308 975210 D responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 974308..975210 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215856.1 CDS ybjN NC_006905.1 975307 975783 D hypothetical protein 975307..975783 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215857.1 CDS potF NC_006905.1 976132 977244 D IPR001188: Bacterial periplasmic spermidine/putrescine-binding protein; putrescine ABC transporter periplasmic-binding protein 976132..977244 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215858.1 CDS potG NC_006905.1 977332 978465 D part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 977332..978465 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215859.1 CDS potH NC_006905.1 978475 979428 D IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR000834: Zinc carboxypeptidase A metalloprotease (M14); putrescine ABC transporter membrane protein 978475..979428 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215860.1 CDS potI NC_006905.1 979425 980270 D IPR000515: Binding-protein-dependent transport systems inner membrane component; putrescine ABC transporter membrane protein 979425..980270 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215861.1 CDS ybjO NC_006905.1 980254 980817 D hypothetical protein 980254..980817 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215862.1 CDS rumB NC_006905.1 980860 981990 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 980860..981990 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215863.1 CDS ulaA NC_006905.1 982273 983616 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 982273..983616 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215864.1 CDS SC0877 NC_006905.1 983646 983966 D similar to SgaT from Vibrio; inner membrane protein 983646..983966 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215865.1 CDS SC0878 NC_006905.1 983976 985463 D sulfatase 983976..985463 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215866.1 CDS artJ NC_006905.1 985681 986412 R IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; arginine ABC transporter ATP-binding protein complement(985681..986412) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215867.1 CDS artM NC_006905.1 986648 987316 R with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM complement(986648..987316) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215868.1 CDS artQ NC_006905.1 987316 988032 R with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ complement(987316..988032) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215869.1 CDS artI NC_006905.1 988039 988839 R IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; arginine ABC transporter ATP-binding protein complement(988039..988839) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215870.1 CDS artP NC_006905.1 988788 989516 R With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit complement(988788..989516) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215871.1 CDS ybjP NC_006905.1 989746 990261 R induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein complement(989746..990261) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215872.1 CDS SC0885 NC_006905.1 990389 990712 D orfB; hypothetical protein 990389..990712 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215873.1 CDS ybjR NC_006905.1 990709 991539 D aminidase 990709..991539 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215874.1 CDS ybjS NC_006905.1 991536 992549 R nucleoside-diphosphate-sugar epimerase complement(991536..992549) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215875.1 CDS ybjT NC_006905.1 992645 994078 R hypothetical protein complement(992645..994078) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215876.1 CDS ltaA NC_006905.1 994089 995090 R low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase complement(994089..995090) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215877.1 CDS poxB NC_006905.1 995129 996847 R catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase complement(995129..996847) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215878.1 CDS hcr NC_006905.1 997005 997976 R IPR000951: Phthalate dioxygenase reductase; IPR001041: Ferredoxin; IPR001221: Phenol hydroxylase reductase;IPR001433: Oxidoreductase FAD/NAD(P)-binding;IPR008333: Oxidoreductase FAD-binding region; HCP oxidoreductase complement(997005..997976) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215879.1 CDS hcp NC_006905.1 997985 999637 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(997985..999637) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215880.1 CDS ybjE NC_006905.1 999781 1000680 R IPR005642: Membrane protein of unknown function DUF340; hypothetical protein complement(999781..1000680) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215881.1 CDS ybjD NC_006905.1 1000882 1002540 D hypothetical protein 1000882..1002540 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215882.1 CDS ybjX NC_006905.1 1002537 1003505 R virK complement(1002537..1003505) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215883.1 CDS ybjY NC_006905.1 1003633 1004751 D confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 1003633..1004751 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215884.1 CDS ybjZ NC_006905.1 1004748 1006694 D with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 1004748..1006694 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215885.1 CDS cspD NC_006905.1 1006824 1007045 R but not cold shock induced; IPR002059: Cold-shock DNA-binding domain; CspA-like protein complement(1006824..1007045) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215886.1 CDS clpS NC_006905.1 1007369 1007689 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1007369..1007689 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215887.1 CDS clpA NC_006905.1 1007720 1009996 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1007720..1009996 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215888.1 CDS SC0901 NC_006905.1 1010209 1010406 R hypothetical protein complement(1010209..1010406) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215889.1 CDS SC0902 NC_006905.1 1010568 1010945 R integrase remnant complement(1010568..1010945) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215890.1 CDS SC0903 NC_006905.1 1011072 1011422 R hypothetical protein complement(1011072..1011422) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215891.1 CDS ycaC NC_006905.1 1011610 1012287 R slsA in STM complement(1011610..1012287) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215892.1 CDS SC0905 NC_006905.1 1012307 1013167 R hypothetical protein complement(1012307..1013167) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215893.1 CDS yafC NC_006905.1 1013276 1014187 D LysR family transcriptional regulator 1013276..1014187 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215894.1 CDS infA NC_006905.1 1014278 1014496 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1014278..1014496) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215895.1 CDS SC0908 NC_006905.1 1014424 1014807 R inner membrane protein complement(1014424..1014807) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215896.1 CDS aat NC_006905.1 1014808 1015512 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(1014808..1015512) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215897.1 CDS cydC NC_006905.1 1015557 1017278 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(1015557..1017278) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215898.1 CDS cydD NC_006905.1 1017279 1019045 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(1017279..1019045) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215899.1 CDS trxB NC_006905.1 1019159 1020127 R catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase complement(1019159..1020127) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215900.1 CDS lrp NC_006905.1 1020673 1021167 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1020673..1021167 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215901.1 CDS ftsK NC_006905.1 1021245 1025378 D DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 1021245..1025378 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215902.1 CDS lolA NC_006905.1 1025518 1026132 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1025518..1026132 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215903.1 CDS ycaJ NC_006905.1 1026142 1027485 D IPR000862: Replication factor C conserved domain; recombination factor protein RarA 1026142..1027485 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215904.1 CDS serS NC_006905.1 1027744 1029036 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1027744..1029036 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215905.1 CDS dmsA NC_006905.1 1029273 1031717 D IPR006311: Twin-arginine translocation pathway signal; IPR006655: Prokaryotic molybdopterin oxidoreductase; IPR006656: Molybdopterin oxidoreductase;IPR006657: Molydopterin dinucleotide binding domain;IPR006963: Molybdopterin oxidoreductase Fe4S4 domain; anaerobic dimethyl sulfoxide reductase subunit A 1029273..1031717 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215906.1 CDS dmsB NC_006905.1 1031729 1032346 D IPR000345: Cytochrome c heme-binding site; IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; anaerobic dimethyl sulfoxide reductase subunit B 1031729..1032346 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215907.1 CDS SC0920 NC_006905.1 1032348 1033211 D anaerobic dimethyl sulfoxide reductase subunit C 1032348..1033211 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215908.1 CDS SC0921 NC_006905.1 1033241 1033348 D hypothetical protein 1033241..1033348 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215909.1 CDS ycaD NC_006905.1 1033561 1034709 D IPR000276: Rhodopsin-like GPCR superfamily; IPR001064: Beta and gamma crystallin; IPR007114: Major facilitator superfamily; MFS family transporter protein 1033561..1034709 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215910.1 CDS ycaM NC_006905.1 1034927 1036348 D IPR002293: Amino acid/polyamine transporter family I; amino acid APC transporter 1034927..1036348 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215911.2 CDS pflA NC_006905.1 1036641 1037438 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(1036641..1037438) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215912.1 CDS SC0925 NC_006905.1 1037566 1037730 D hypothetical protein 1037566..1037730 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215913.1 CDS sopD NC_006905.1 1038014 1038973 D secreted protein SopD-like protein 1038014..1038973 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215914.1 CDS pflB NC_006905.1 1039049 1041331 R IPR001150: Formate C-acetyltransferase glycine radical; pyruvate formate lyase I complement(1039049..1041331) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215915.1 CDS focA NC_006905.1 1041391 1042368 R IPR000292: Formate/nitrite transporter; formate transporter complement(1041391..1042368) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215916.1 CDS ycaO NC_006905.1 1042653 1044488 R hypothetical protein complement(1042653..1044488) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215917.1 CDS ycaP NC_006905.1 1044550 1045242 D hypothetical protein 1044550..1045242 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215918.1 CDS serC NC_006905.1 1045428 1046516 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1045428..1046516 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215919.1 CDS aroA NC_006905.1 1046582 1047865 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1046582..1047865 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215920.1 CDS ycaL NC_006905.1 1048008 1048769 D IPR006025: Neutral zinc metallopeptidases, zinc-binding site; Zn-dependent protease with chaperone function 1048008..1048769 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215921.1 CDS cmk NC_006905.1 1048942 1049625 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1048942..1049625 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215922.1 CDS rpsA NC_006905.1 1049737 1051410 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1049737..1051410 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215923.1 CDS ihfB NC_006905.1 1051566 1051850 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1051566..1051850 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215924.1 CDS SC0937 NC_006905.1 1051963 1052364 D hypothetical protein 1051963..1052364 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215925.1 CDS yis NC_006905.1 1052535 1053218 D integrase 1052535..1053218 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215926.1 CDS SC0939 NC_006905.1 1053493 1053822 D hypothetical protein 1053493..1053822 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215927.1 CDS SC0940 NC_006905.1 1054751 1054951 D hypothetical protein 1054751..1054951 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215928.1 CDS msbA NC_006905.1 1055697 1057445 D involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding protein/permease 1055697..1057445 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215929.1 CDS lpxK NC_006905.1 1057442 1058419 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1057442..1058419 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215930.1 CDS ycaQ NC_006905.1 1058463 1059695 D hypothetical protein 1058463..1059695 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215931.1 CDS ycaR NC_006905.1 1059702 1059929 D hypothetical protein 1059702..1059929 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215932.1 CDS kdsB NC_006905.1 1059926 1060672 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1059926..1060672 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215934.1 CDS ycbJ NC_006905.1 1060883 1061776 D hypothetical protein 1060883..1061776 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215935.1 CDS ycbC NC_006905.1 1061756 1062532 R hypothetical protein complement(1061756..1062532) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215936.1 CDS smtA NC_006905.1 1062668 1063471 D involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA 1062668..1063471 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215937.1 CDS mukF NC_006905.1 1063464 1064786 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1063464..1064786 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215938.1 CDS mukE NC_006905.1 1064740 1065471 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1064740..1065471 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215939.1 CDS ycbB NC_006905.1 1070284 1072131 D IPR001064: Beta and gamma crystallin; IPR002052: N-6 Adenine-specific DNA methylase; hypothetical protein 1070284..1072131 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215940.1 CDS ycbK NC_006905.1 1072391 1072939 D hypothetical protein 1072391..1072939 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215941.1 CDS ycbL NC_006905.1 1072967 1073614 D hypothetical protein 1072967..1073614 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215942.1 CDS aspC NC_006905.1 1073676 1074866 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1073676..1074866) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215943.1 CDS ompF NC_006905.1 1075051 1076148 R IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; outer membrane protein 1a (IA;b;f), porin complement(1075051..1076148) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215944.1 CDS asnC NC_006905.1 1076755 1078155 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1076755..1078155) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215945.1 CDS SC0958 NC_006905.1 1078356 1078817 R IPR000485: Bacterial regulatory proteins, AsnC/Lrp; leucine response regulator complement(1078356..1078817) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215946.1 CDS dpaL NC_006905.1 1079231 1080331 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1079231..1080331 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215947.1 CDS SC0960 NC_006905.1 1080423 1080581 D hypothetical protein 1080423..1080581 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215948.1 CDS lrp NC_006905.1 1080595 1082031 D IPR001463: Sodium:alanine symporter; IPR002293: Amino acid/polyamine transporter family I; Lrp family transcriptional regulator 1080595..1082031 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215949.1 CDS pncB NC_006905.1 1082109 1083359 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1082109..1083359) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215950.1 CDS intQ NC_006905.1 1083517 1084794 R Gifsy-2 prophage integrase complement(1083517..1084794) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215952.1 CDS recT NC_006905.1 1085411 1086568 R IPR004590: RecT protein; Gifsy-2 prophage RecT complement(1085411..1086568) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215953.1 CDS SC0966 NC_006905.1 1087793 1088206 R exodeoxyribonuclease VIII complement(1087793..1088206) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215954.1 CDS SC0967 NC_006905.1 1089583 1089933 R Gifsy-1 prophage protein complement(1089583..1089933) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215955.1 CDS SC0968 NC_006905.1 1089955 1090113 R Gifsy-1 prophage protein complement(1089955..1090113) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215956.1 CDS SC0969 NC_006905.1 1090106 1090222 R Gifsy-1 prophage protein complement(1090106..1090222) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215957.1 CDS SC0970 NC_006905.1 1090512 1090718 D hypothetical protein 1090512..1090718 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215958.1 CDS SC0971 NC_006905.1 1090751 1091683 R hypothetical protein complement(1090751..1091683) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215959.1 CDS SC0972 NC_006905.1 1091680 1092153 R hypothetical protein complement(1091680..1092153) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215960.1 CDS SC0973 NC_006905.1 1092304 1092771 R regulator complement(1092304..1092771) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215961.1 CDS SC0974 NC_006905.1 1092942 1093352 D similar to cI protein in phage N; Gifsy-1 prophage cI 1092942..1093352 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215962.1 CDS SC0975 NC_006905.1 1093444 1094280 D replication protein O of prophage CP-933X 1093444..1094280 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215963.1 CDS SC0976 NC_006905.1 1094277 1094972 D replication protein O of prophage CP-933X 1094277..1094972 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215964.1 CDS SC0977 NC_006905.1 1094986 1095783 D hypothetical protein 1094986..1095783 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215965.1 CDS dinI NC_006905.1 1096303 1096542 D Gifsy-1 prophage DinI 1096303..1096542 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215966.1 CDS SC0979 NC_006905.1 1096877 1097479 D Gifsy-2 prophage protein 1096877..1097479 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215967.1 CDS SC0980 NC_006905.1 1097485 1097685 D hypothetical protein 1097485..1097685 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215968.1 CDS ninG NC_006905.1 1097688 1098299 D Gifsy-1 prophage protein 1097688..1098299 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215969.1 CDS SC0982 NC_006905.1 1098296 1098436 D Gifsy-1 prophage protein 1098296..1098436 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215970.1 CDS regQ NC_006905.1 1098433 1099113 D similar to antiterminator Q; Gifsy-1 prophage RegQ 1098433..1099113 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215971.1 CDS gtgA NC_006905.1 1099234 1099920 R IPR006025: Neutral zinc metallopeptidases, zinc-binding site; Gifsy-2 prophage GtgA complement(1099234..1099920) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215972.1 CDS SC0985 NC_006905.1 1100190 1100525 D Gifsy-1 prophage protein 1100190..1100525 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215973.1 CDS lycV NC_006905.1 1100512 1100961 D Gifsy-2 prophage lysozyme 1100512..1100961 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215974.1 CDS rzpD NC_006905.1 1100979 1101458 D Gifsy-2 prophage RzpD 1100979..1101458 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215975.1 CDS SC0988 NC_006905.1 1101615 1102040 D Gifsy-2 prophage protein 1101615..1102040 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215977.1 CDS SC0990 NC_006905.1 1104132 1104338 D hypothetical protein 1104132..1104338 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215978.1 CDS vmtV NC_006905.1 1104335 1105864 D Gifsy-2 prophage VmtV 1104335..1105864 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215979.1 CDS SC0992 NC_006905.1 1105910 1106308 D Gifsy-2 prophage minor tail protein 1105910..1106308 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215980.1 CDS SC0993 NC_006905.1 1106383 1106634 D Gifsy-2 prophage minor tail protein 1106383..1106634 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215981.1 CDS SC0994 NC_006905.1 1106648 1109701 D Gifsy-2 prophage minor tail protein 1106648..1109701 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215982.1 CDS vmtM NC_006905.1 1109698 1110030 D Gifsy-2 prophage minor tail protein 1109698..1110030 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215983.1 CDS ail NC_006905.1 1110129 1110626 D IPR000758: Virulence-related outer membrane protein; Gifsy-2 prophage attachment and invasion protein-like protein 1110129..1110626 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215984.1 CDS sodC NC_006905.1 1110743 1111276 R IPR001424: Copper/Zinc superoxide dismutase; Gifsy-2 prophage superoxide dismutase(Cu-Zn) complement(1110743..1111276) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215985.1 CDS vmtL NC_006905.1 1111366 1112061 D Gifsy-2 prophage minor tail protein 1111366..1112061 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215986.1 CDS vtaK NC_006905.1 1112071 1112808 D Gifsy-2 prophage tail assembly protein 1112071..1112808 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215987.1 CDS vtaI NC_006905.1 1112745 1113410 D Gifsy-2 prophage tail assembly protein 1112745..1113410 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215988.1 CDS SC1001 NC_006905.1 1116870 1117112 D hypothetical protein 1116870..1117112 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215989.1 CDS stf NC_006905.1 1117166 1119604 D IPR000104: Antifreeze protein, type I; Gifsy-2 prophage tail fiber protein 1117166..1119604 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215990.1 CDS ycdD NC_006905.1 1119604 1120185 D Gifsy-2 prophage tail fiber assembly like-protein 1119604..1120185 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215991.1 CDS sseI NC_006905.1 1120768 1121628 D Gifsy-2 prophage type III secreted protein 1120768..1121628 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215992.1 CDS SC1005 NC_006905.1 1121821 1122069 D ISSfl3 orfC,D 1121821..1122069 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215993.1 CDS yedK NC_006905.1 1122201 1122827 R hypothetical protein complement(1122201..1122827) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215994.1 CDS SC1007 NC_006905.1 1122803 1122958 D hypothetical protein 1122803..1122958 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215995.1 CDS SC1008 NC_006905.1 1123180 1123866 R Gifsy-2 prophage protein complement(1123180..1123866) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215996.1 CDS msgA NC_006905.1 1124136 1124402 R Gifsy-2 prophage MsgA complement(1124136..1124402) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215997.2 CDS pepN NC_006905.1 1124754 1127366 D IPR001930: Peptidase M1, membrane alanine aminopeptidase; IPR006025: Neutral zinc metallopeptidases, zinc-binding site; aminopeptidase 1124754..1127366 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215998.1 CDS pyrD NC_006905.1 1127574 1128584 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1127574..1128584 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_215999.1 CDS ycbW NC_006905.1 1128751 1129293 D hypothetical protein 1128751..1129293 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216000.1 CDS ycbX NC_006905.1 1129290 1130399 R hypothetical protein complement(1129290..1130399) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216001.1 CDS rlmL NC_006905.1 1130498 1132606 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1130498..1132606 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216002.1 CDS pqiA NC_006905.1 1134541 1135794 D paraquat-inducible protein A 1134541..1135794 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216003.1 CDS pqiB NC_006905.1 1135799 1137439 D paraquat-inducible protein B 1135799..1137439 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216004.1 CDS ymbA NC_006905.1 1137436 1137999 D outer membrane protein 1137436..1137999 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216005.1 CDS rmf NC_006905.1 1138255 1138422 D ribosome modulation factor 1138255..1138422 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216006.1 CDS fabA NC_006905.1 1138522 1139040 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1138522..1139040) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216007.1 CDS lonH NC_006905.1 1139109 1140869 R IPR001984: Peptidase family S16; hypothetical protein complement(1139109..1140869) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216008.1 CDS ycbG NC_006905.1 1141055 1141507 D hypothetical protein 1141055..1141507 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216009.1 CDS ompA NC_006905.1 1141579 1142631 R OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein OmpA complement(1141579..1142631) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216010.1 CDS sulA NC_006905.1 1142988 1143497 R SOS cell division inhibitor complement(1142988..1143497) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216011.1 CDS yccR NC_006905.1 1143714 1144319 D hypothetical protein 1143714..1144319 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216012.1 CDS yccS NC_006905.1 1144306 1146459 R IPR005829: Sugar transporter superfamily; efflux (PET) family transporter complement(1144306..1146459) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216013.1 CDS yccF NC_006905.1 1146478 1146924 R hypothetical protein complement(1146478..1146924) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216014.1 CDS helD NC_006905.1 1147048 1149102 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1147048..1149102 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216015.1 CDS mgsA NC_006905.1 1149138 1149596 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(1149138..1149596) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216016.1 CDS yccT NC_006905.1 1149691 1150353 R hypothetical protein complement(1149691..1150353) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216017.1 CDS yccU NC_006905.1 1150524 1150940 D IPR003781: CoA-binding domain; hypothetical protein 1150524..1150940 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216018.1 CDS yccV NC_006905.1 1150985 1151302 R heat shock protein HspQ complement(1150985..1151302) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216019.1 CDS yccW NC_006905.1 1151360 1152727 R IPR000051: SAM (and some other nucleotide) binding motif; IPR002478: PUA domain; hypothetical protein complement(1151360..1152727) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216020.1 CDS ybcL NC_006905.1 1152786 1153334 D outer membrane protein 1152786..1153334 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216021.1 CDS ybcM NC_006905.1 1153360 1154139 D IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 1153360..1154139 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216022.1 CDS yccX NC_006905.1 1154188 1154469 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1154188..1154469 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216023.1 CDS yccK NC_006905.1 1154466 1154795 R transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE complement(1154466..1154795) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216024.1 CDS yccA NC_006905.1 1154882 1155541 R IPR006213: Bax inhibitor 1; hypothetical protein complement(1154882..1155541) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216026.1 CDS pipA NC_006905.1 1156160 1156840 R IPR006025: Neutral zinc metallopeptidases, zinc-binding site; pathogenicity island encoded protein: SPI3 complement(1156160..1156840) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216027.1 CDS pipB NC_006905.1 1157062 1157937 R IPR000169: Eukaryotic thiol (cysteine) protease; pathogenicity island encoded protein: SPI3 complement(1157062..1157937) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216028.1 CDS SC1041 NC_006905.1 1158149 1158475 D inner membrane protein 1158149..1158475 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216029.1 CDS pipC NC_006905.1 1158485 1158826 R hypothetical protein complement(1158485..1158826) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216030.1 CDS sopB NC_006905.1 1158843 1160528 R similar to ipgD of Shigella; outer protein complement(1158843..1160528) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216031.1 CDS pipD NC_006905.1 1160620 1161624 R pathogenicity island encoded protein: SPI3 complement(1160620..1161624) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216032.1 CDS copS NC_006905.1 1161704 1163068 R IPR003660: Histidine kinase, HAMP region; IPR005467: Histidine kinase; copper resistance; histidine kinase complement(1161704..1163068) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216033.2 CDS copR NC_006905.1 1163061 1163741 R induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW complement(1163061..1163741) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216034.1 CDS yedX NC_006905.1 1163877 1164287 D IPR000895: Transthyretin; hypothetical protein 1163877..1164287 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216035.1 CDS hpaC NC_006905.1 1164620 1165132 R 4-hydroxyphenylacetate catabolism complement(1164620..1165132) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216036.1 CDS hpaB NC_006905.1 1165150 1166712 R 4-hydroxyphenylacetate catabolism complement(1165150..1166712) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216037.1 CDS hpaR NC_006905.1 1166930 1167370 R IPR000835: Bacterial regulatory protein, MarR family; 4-hydroxyphenylacetate catabolism complement(1166930..1167370) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216038.1 CDS hpaG NC_006905.1 1167645 1168934 D 4-hydroxyphenylacetate catabolism 1167645..1168934 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216039.1 CDS hpaE NC_006905.1 1168931 1170397 D IPR002086: Aldehyde dehydrogenase; 4-hydroxyphenylacetate catabolism 1168931..1170397 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216040.1 CDS hpaD NC_006905.1 1170399 1171250 D 4-hydroxyphenylacetate catabolism 1170399..1171250 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216041.1 CDS hpaF NC_006905.1 1171260 1171640 D 4-hydroxyphenylacetate catabolism 1171260..1171640 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216042.1 CDS hpaH NC_006905.1 1171773 1172576 D IPR002607: Hydratase/decarboxylase; 4-hydroxyphenylacetate catabolism 1171773..1172576 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216043.1 CDS hpaI NC_006905.1 1172587 1173378 D 4-hydroxyphenylacetate catabolism 1172587..1173378 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216044.1 CDS hpaX NC_006905.1 1173450 1174826 D IPR007114: Major facilitator superfamily; 4-hydroxyphenylacetate catabolism 1173450..1174826 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216045.1 CDS hpaA NC_006905.1 1174836 1175732 D IPR000005: Helix-turn-helix, AraC type; 4-hydroxyphenylacetate catabolism 1174836..1175732 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216046.1 CDS ars NC_006905.1 1175746 1176684 D hypothetical protein 1175746..1176684 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216047.1 CDS elbA NC_006905.1 1177092 1177454 R hypothetical protein complement(1177092..1177454) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216048.1 CDS SC1061 NC_006905.1 1177902 1178057 D hypothetical protein 1177902..1178057 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216049.1 CDS yccD NC_006905.1 1178108 1178413 R with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM complement(1178108..1178413) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216050.1 CDS cbpA NC_006905.1 1178413 1179333 R functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA complement(1178413..1179333) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216051.1 CDS SC1064 NC_006905.1 1179569 1179931 D IPR002016: Haem peroxidase; suppression of copper sensitivity copper binding protein 1179569..1179931 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216052.1 CDS SC1065 NC_006905.1 1181863 1182486 D IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; hypothetical protein 1181863..1182486 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216053.1 CDS SC1066 NC_006905.1 1182476 1182982 D IPR006663: Thioredoxin domain 2; hypothetical protein 1182476..1182982 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216054.1 CDS agp NC_006905.1 1183115 1184356 D IPR000560: Histidine acid phosphatase; glucose-1-phosphatase/inositol phosphatase 1183115..1184356 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216055.1 CDS yccJ NC_006905.1 1184390 1184617 R hypothetical protein complement(1184390..1184617) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216056.1 CDS wraB NC_006905.1 1184638 1185117 R IPR008254: Flavodoxin/nitric oxide synthase; trp-repressor binding protein complement(1184638..1185117) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216057.1 CDS SC1070 NC_006905.1 1185248 1185475 D hypothetical protein 1185248..1185475 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216058.1 CDS SC1071 NC_006905.1 1185515 1185709 D hypothetical protein 1185515..1185709 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216059.1 CDS ycdC NC_006905.1 1185806 1186444 D IPR001647: Bacterial regulatory protein TetR, HTH motif; TetR/AcrR family transcriptional regulator 1185806..1186444 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216060.1 CDS SC1073 NC_006905.1 1186441 1186836 R hypothetical protein complement(1186441..1186836) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216061.1 CDS putA NC_006905.1 1186895 1190857 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1186895..1190857) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216062.1 CDS SC1075 NC_006905.1 1190918 1191049 D hypothetical protein 1190918..1191049 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216063.1 CDS putP NC_006905.1 1191279 1192787 D IPR001734: Na+/solute symporter; SSS family major sodium/proline symporter 1191279..1192787 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216064.1 CDS phoH NC_006905.1 1193614 1194468 D IPR003714: PhoH-like protein; hypothetical protein 1193614..1194468 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216065.1 CDS hthR NC_006905.1 1194574 1195455 R transcriptional regulator complement(1194574..1195455) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216066.1 CDS SC1079 NC_006905.1 1197573 1198253 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1197573..1198253) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216067.1 CDS yjhT NC_006905.1 1198759 1199919 D IPR006652: Kelch repeat; N-acetylneuraminic acid mutarotase 1198759..1199919 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216068.1 CDS yiiy NC_006905.1 1199965 1200657 D outer membrane protein 1199965..1200657 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216069.1 CDS yjhC NC_006905.1 1203569 1204675 D IPR000683: Oxidoreductase, N-terminal; IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR004104: Oxidoreductase, C-terminal; dehydrogenase-like protein 1203569..1204675 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216070.1 CDS ycdW NC_006905.1 1205151 1206089 D oxidoreductase 1205151..1206089 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216071.1 CDS ycdX NC_006905.1 1206174 1206911 D hydrolase 1206174..1206911 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216072.1 CDS ycdY NC_006905.1 1206935 1207489 D hypothetical protein 1206935..1207489 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216073.1 CDS ycdZ NC_006905.1 1207542 1208072 D hypothetical protein 1207542..1208072 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216074.1 CDS csgG NC_006905.1 1208110 1208943 R transcriptional regulator in curly assembly/transport, 2nd curli operon complement(1208110..1208943) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216075.1 CDS csgF NC_006905.1 1208970 1209386 R nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF complement(1208970..1209386) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216076.1 CDS csgE NC_006905.1 1209413 1209808 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE complement(1209413..1209808) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216077.1 CDS csgD NC_006905.1 1209813 1210463 R activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD complement(1209813..1210463) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216078.1 CDS csgB NC_006905.1 1211218 1211673 D CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1211218..1211673 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216079.1 CDS csgA NC_006905.1 1211715 1212170 D cryptic curlin major subunit 1211715..1212170 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216080.2 CDS csgC NC_006905.1 1212232 1212558 D involved in autoagglutination of curliated cells; not involved in production of curli fibers; autoagglutination protein 1212232..1212558 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216081.1 CDS ymdA NC_006905.1 1212689 1213009 D hypothetical protein 1212689..1213009 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216082.1 CDS ymdC NC_006905.1 1213442 1215028 D IPR001736: Phospholipase D/Transphosphatidylase; hypothetical protein 1213442..1215028 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216083.1 CDS mdoC NC_006905.1 1215045 1216199 R required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein complement(1215045..1216199) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216084.1 CDS mdoG NC_006905.1 1216480 1218006 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1216480..1218006 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216085.1 CDS mdoH NC_006905.1 1217969 1220542 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1217969..1220542 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216086.1 CDS yceK NC_006905.1 1220604 1220843 D hypothetical protein 1220604..1220843 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216087.1 CDS msyB NC_006905.1 1220844 1221218 R hypothetical protein complement(1220844..1221218) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216088.1 CDS yceE NC_006905.1 1221300 1222514 R Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG complement(1221300..1222514) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216089.2 CDS htrB NC_006905.1 1222669 1223589 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(1222669..1223589) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216090.1 CDS yceA NC_006905.1 1223809 1224861 D IPR001763: Rhodanese-like; hypothetical protein 1223809..1224861 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216091.1 CDS yceI NC_006905.1 1224913 1225488 R hypothetical protein complement(1224913..1225488) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216092.1 CDS SC1105 NC_006905.1 1225485 1226057 R IPR000516: Nickel-dependent hydrogenase b-type cytochrome subunit; inner membrane protein complement(1225485..1226057) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216093.1 CDS SC1106 NC_006905.1 1226068 1226271 D hypothetical protein 1226068..1226271 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216094.1 CDS yceO NC_006905.1 1226320 1226433 R inner membrane protein complement(1226320..1226433) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216095.1 CDS solA NC_006905.1 1226474 1227592 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase complement(1226474..1227592) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216096.1 CDS bssS NC_006905.1 1227705 1227959 R BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS complement(1227705..1227959) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216097.2 CDS dinI NC_006905.1 1228249 1228494 R DNA damage-inducible protein I complement(1228249..1228494) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216098.1 CDS pyrC NC_006905.1 1228568 1229614 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1228568..1229614) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216099.1 CDS yceB NC_006905.1 1229718 1230278 R hypothetical protein complement(1229718..1230278) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216100.1 CDS grxB NC_006905.1 1230403 1231050 R cofactor involved in the reduction of disulfides; glutaredoxin complement(1230403..1231050) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216101.1 CDS yceL NC_006905.1 1231114 1232322 R Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH complement(1231114..1232322) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216102.1 CDS rimJ NC_006905.1 1232559 1233143 D ribosomal-protein-S5-alanine N-acetyltransferase 1232559..1233143 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216103.1 CDS yceH NC_006905.1 1233179 1233826 D hypothetical protein 1233179..1233826 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216104.1 CDS mviN NC_006905.1 1235098 1236591 D virulence factor 1235098..1236591 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216105.1 CDS flgN NC_006905.1 1236673 1237095 R for FlgK and FlgL; flagellar biosynthesis chaperone complement(1236673..1237095) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216106.1 CDS flgM NC_006905.1 1237100 1237393 R regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM complement(1237100..1237393) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216107.1 CDS flgA NC_006905.1 1237485 1238144 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1237485..1238144) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216108.1 CDS flgB NC_006905.1 1238301 1238717 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 1238301..1238717 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216109.1 CDS flgC NC_006905.1 1238721 1239125 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1238721..1239125 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216110.1 CDS flgD NC_006905.1 1239137 1239835 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1239137..1239835 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216111.1 CDS flgE NC_006905.1 1239862 1241073 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1239862..1241073 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216112.1 CDS flgF NC_006905.1 1241094 1241849 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1241094..1241849 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216113.1 CDS flgG NC_006905.1 1241863 1242645 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1241863..1242645 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216114.1 CDS flgH NC_006905.1 1242691 1243398 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1242691..1243398 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216115.1 CDS flgI NC_006905.1 1243404 1244507 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 1243404..1244507 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216116.1 CDS flgJ NC_006905.1 1244507 1245457 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1244507..1245457 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216117.1 CDS flgK NC_006905.1 1245522 1247183 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1245522..1247183 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216118.1 CDS flgL NC_006905.1 1247198 1248151 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 1247198..1248151 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216119.1 CDS rne NC_006905.1 1248408 1251614 R bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E complement(1248408..1251614) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216120.1 CDS SC1133 NC_006905.1 1251750 1251998 D hypothetical protein 1251750..1251998 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216121.2 CDS rluC NC_006905.1 1252188 1253147 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 1252188..1253147 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216122.1 CDS SC1135 NC_006905.1 1253285 1254046 D inner membrane lipoprotein 1253285..1254046 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216123.1 CDS SC1136 NC_006905.1 1254252 1254476 D hypothetical protein 1254252..1254476 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216124.1 CDS maf NC_006905.1 1254549 1255133 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1254549..1255133) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216125.1 CDS yceD NC_006905.1 1255331 1255852 D hypothetical protein 1255331..1255852 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216126.1 CDS rpmF NC_006905.1 1255904 1256077 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1255904..1256077 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216127.1 CDS plsX NC_006905.1 1256211 1257290 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1256211..1257290 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216128.1 CDS fabH NC_006905.1 1257370 1258323 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1257370..1258323 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216129.1 CDS fabD NC_006905.1 1258339 1259268 D ACP S-malonyltransferase 1258339..1259268 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216130.1 CDS fabG NC_006905.1 1259281 1260015 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1259281..1260015 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216131.1 CDS acpP NC_006905.1 1260171 1260407 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1260171..1260407 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216132.1 CDS fabF NC_006905.1 1260493 1261734 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1260493..1261734 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216133.1 CDS SC1146 NC_006905.1 1261848 1262249 D hypothetical protein 1261848..1262249 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216134.1 CDS yis2 NC_006905.1 1262420 1263103 D integrase 1262420..1263103 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216135.1 CDS pabC NC_006905.1 1263173 1263982 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1263173..1263982 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216136.1 CDS yceG NC_006905.1 1263985 1265007 D IPR003770: Protein of unknown function DUF175; hypothetical protein 1263985..1265007 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216137.1 CDS tmk NC_006905.1 1264997 1265638 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1264997..1265638 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216138.1 CDS holB NC_006905.1 1265635 1266639 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1265635..1266639 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216139.1 CDS ycfH NC_006905.1 1266650 1267447 D IPR001130: TatD-related deoxyribonuclease; metallodependent hydrolase 1266650..1267447 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216140.1 CDS ptsG NC_006905.1 1267742 1269175 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 1267742..1269175 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216141.1 CDS fhuE NC_006905.1 1269261 1271435 R IPR000531: TonB-dependent receptor protein; ferric-rhodotorulic acid outer membrane transporter complement(1269261..1271435) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216142.1 CDS ycfF NC_006905.1 1271759 1272136 D IPR001310: Histidine triad (HIT) protein; purine nucleoside phosphoramidase 1271759..1272136 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216143.1 CDS ycfL NC_006905.1 1272139 1272513 D outer membrane lipoprotein 1272139..1272513 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216144.1 CDS ycfM NC_006905.1 1272527 1273156 D outer membrane lipoprotein 1272527..1273156 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216145.1 CDS thiK NC_006905.1 1273137 1273961 D catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1273137..1273961 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216146.1 CDS nagZ NC_006905.1 1273972 1274997 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1273972..1274997 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216147.1 CDS ycfP NC_006905.1 1275022 1275564 D hypothetical protein 1275022..1275564 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216148.1 CDS ndh NC_006905.1 1275842 1277122 D respiratory NADH dehydrogenase 2; cupric reductase 1275842..1277122 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216149.1 CDS ycfJ NC_006905.1 1277301 1277840 D hypothetical protein 1277301..1277840 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216150.1 CDS ycfQ NC_006905.1 1277914 1278549 R IPR001647: Bacterial regulatory protein TetR, HTH motif; TetR/AcrR family transcriptional regulator complement(1277914..1278549) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216151.1 CDS ycfR NC_006905.1 1278725 1279048 D outer membrane protein 1278725..1279048 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216152.1 CDS ycfS NC_006905.1 1279145 1280110 R hypothetical protein complement(1279145..1280110) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216153.1 CDS mfd NC_006905.1 1280258 1283704 R IPR001410: DEAD/DEAH box helicase; transcription-repair coupling factor complement(1280258..1283704) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216154.1 CDS ycfU NC_006905.1 1283931 1285241 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1283931..1285241 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216155.1 CDS lolD NC_006905.1 1285234 1285935 D outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 1285234..1285935 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216156.1 CDS ycfW NC_006905.1 1285935 1287179 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1285935..1287179 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216157.1 CDS ycfX NC_006905.1 1287208 1288119 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1287208..1288119 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216158.1 CDS cobB NC_006905.1 1288138 1288959 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1288138..1288959 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216159.1 CDS potD NC_006905.1 1289041 1290087 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein complement(1289041..1290087) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216160.1 CDS potC NC_006905.1 1290112 1290891 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein complement(1290112..1290891) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216161.1 CDS sifA NC_006905.1 1291208 1292218 R translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein complement(1291208..1292218) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216162.1 CDS SC1175 NC_006905.1 1292277 1292453 R hypothetical protein complement(1292277..1292453) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216163.1 CDS potB NC_006905.1 1292547 1293410 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein complement(1292547..1293410) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216164.1 CDS potA NC_006905.1 1293394 1294530 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase complement(1293394..1294530) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216165.1 CDS pepT NC_006905.1 1294781 1296010 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1294781..1296010 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216166.1 CDS SC1179 NC_006905.1 1296014 1297348 D hypothetical protein 1296014..1297348 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216167.1 CDS ycfD NC_006905.1 1297388 1298539 R IPR007113: Cupin domain; hypothetical protein complement(1297388..1298539) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216168.1 CDS phoQ NC_006905.1 1298590 1300053 R IPR003660: Histidine kinase, HAMP region; IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensor protein PhoQ complement(1298590..1300053) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216169.1 CDS phoP NC_006905.1 1300053 1300727 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP complement(1300053..1300727) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216170.1 CDS purB NC_006905.1 1300851 1302221 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1300851..1302221) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216171.1 CDS ycfC NC_006905.1 1302225 1302872 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1302225..1302872) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216172.2 CDS mnmA NC_006905.1 1302953 1304059 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1302953..1304059) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216173.1 CDS ymfB NC_006905.1 1304113 1304574 R IPR000086: NUDIX hydrolase; MutT-like protein complement(1304113..1304574) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216174.1 CDS SC1187 NC_006905.1 1304586 1304915 R hypothetical protein complement(1304586..1304915) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216175.1 CDS ymfC NC_006905.1 1304912 1305571 R IPR000748: Pseudouridine synthase, Rsu; ribosomal large subunit pseudouridine synthase complement(1304912..1305571) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216176.1 CDS icdA NC_006905.1 1305665 1306915 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1305665..1306915 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216177.1 CDS intE NC_006905.1 1307027 1308154 R prophage lambda integrase (Int(lambda)) complement(1307027..1308154) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216178.1 CDS tnpR NC_006905.1 1308400 1309608 D transposase of Tn10 1308400..1309608 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216179.1 CDS SC1192 NC_006905.1 1309795 1309944 R hypothetical protein complement(1309795..1309944) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216180.1 CDS yfdQ NC_006905.1 1310081 1310908 R hypothetical protein complement(1310081..1310908) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216181.1 CDS yfdP NC_006905.1 1310966 1311322 R hypothetical protein complement(1310966..1311322) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216182.1 CDS SC1195 NC_006905.1 1311443 1311928 D hypothetical protein 1311443..1311928 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216183.1 CDS rpc NC_006905.1 1312329 1313108 R regulatory protein complement(1312329..1313108) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216184.1 CDS ymfL NC_006905.1 1313459 1314013 D hypothetical protein 1313459..1314013 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216185.1 CDS SC1198 NC_006905.1 1314010 1316490 D antirepressor 1314010..1316490 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216188.1 CDS SC1201 NC_006905.1 1316708 1317526 D replication protein 1316708..1317526 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216189.1 CDS fdM NC_006905.1 1318010 1318663 D IPR002052: N-6 Adenine-specific DNA methylase; DNA adenine methylase 1318010..1318663 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216190.1 CDS rusA NC_006905.1 1318660 1319049 D IPR008822: Endodeoxyribonuclease RusA; crossover junction endodeoxyribonuclease 1318660..1319049 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216191.1 CDS SC1204 NC_006905.1 1319066 1319926 D hypothetical protein 1319066..1319926 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216192.1 CDS ydfU NC_006905.1 1319934 1320923 D hypothetical protein 1319934..1320923 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216193.1 CDS SC1206 NC_006905.1 1320938 1321516 D hypothetical protein 1320938..1321516 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216194.1 CDS SC1207 NC_006905.1 1321742 1322161 D hypothetical protein 1321742..1322161 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216195.1 CDS SC1208 NC_006905.1 1322370 1322552 D IPR001091: Site-specific DNA-methyltransferase (cytosine-N4-specific); hypothetical protein 1322370..1322552 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216196.1 CDS SC1209 NC_006905.1 1322662 1323051 D prophage membrane protein 1322662..1323051 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216197.1 CDS SC1210 NC_006905.1 1323038 1323319 D prophage membrane protein 1323038..1323319 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216198.1 CDS SC1211 NC_006905.1 1323319 1323933 D Fels-1 prophage chitinase 1323319..1323933 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216199.1 CDS VG55 NC_006905.1 1323930 1324472 D protein gp55 1323930..1324472 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216200.1 CDS SC1213 NC_006905.1 1324527 1325078 D hypothetical protein 1324527..1325078 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216201.1 CDS terS NC_006905.1 1325337 1325882 D similar to DNA packaging protein Nu1 of phage 21; Gifsy-1 prophage DNA packaging protein 1325337..1325882 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216202.1 CDS terL NC_006905.1 1325854 1327785 D similar to terminase large chain gp2 of N15; Gifsy-1 prophage terminase large chaing gp2 1325854..1327785 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216203.1 CDS vhtJ NC_006905.1 1327769 1327972 D similar to head to tail joining protein; IPR004174: Head-to-tail joining protein W, gpW; Gifsy-1 prophage head to tail joining protein 1327769..1327972 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216204.1 CDS vgpW NC_006905.1 1327969 1329549 D similar to head-tail preconnector gp4 of phage 21; Gifsy-1 prophage head-tail preconnector gp4 1327969..1329549 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216205.1 CDS vg05 NC_006905.1 1329539 1331035 D similar to head-tail preconnector gp5 of phage 21; IPR002142: Peptidase U7; Gifsy-1 prophage head-tail preconnector gp5 1329539..1331035 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216206.1 CDS hdpD NC_006905.1 1331048 1331395 D similar to head protein gpshp of phage 21; IPR004195: Bacteriophage lambda head decoration protein D, HDPD; Gifsy-1 prophage head protein gpshp 1331048..1331395 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216207.1 CDS SC1220 NC_006905.1 1331450 1332478 D similar to head protein gp7 of phage 21; Gifsy-1 prophage head protein gp7 1331450..1332478 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216208.1 CDS vgp7 NC_006905.1 1332536 1332895 D similar to DNA packaging protein gp9 of phage N14; Gifsy-1 prophage DNA packaging protein 1332536..1332895 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216209.1 CDS mcpF NC_006905.1 1332906 1333289 D similar to minor capsid protein FII of phage N15; Gifsy-1 prophage minor capsid protein FII 1332906..1333289 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216210.1 CDS gipA NC_006905.1 1333322 1334452 R Gifsy-1 prophage GlpA complement(1333322..1334452) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216211.1 CDS vmtZ NC_006905.1 1334558 1335136 D similar to minor tail protein Z; Gifsy-1 prophagei VmtZ 1334558..1335136 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216212.1 CDS vmtU NC_006905.1 1335133 1335534 D Gifsy-1 prophage VmtU 1335133..1335534 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216213.1 CDS vmtV NC_006905.1 1335545 1336288 D similar to major tail protein; Gifsy-1 prophage VmtV 1335545..1336288 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216214.1 CDS SC1227 NC_006905.1 1336339 1336734 D Gifsy-1 prophage minor tail protein 1336339..1336734 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216215.1 CDS vmtT NC_006905.1 1336755 1337069 D similar to minor tail protein; Gifsy-1 prophage VmtT 1336755..1337069 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216216.1 CDS vmtH NC_006905.1 1337041 1340082 D similar to phage tail component H; Gifsy-1 prophage VmtH 1337041..1340082 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216217.1 CDS vmtM NC_006905.1 1340085 1340414 D similar to phage tail component M; Gifsy-1 prophage VmtM 1340085..1340414 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216218.1 CDS vmtL NC_006905.1 1340424 1341122 D similar to phage tail component L; Gifsy-1 prophage VmtL 1340424..1341122 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216219.1 CDS vtaK NC_006905.1 1341312 1341866 D similar to tail assembly protein K in phage lambda; Gifsy-1 prophage VtaK 1341312..1341866 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216220.1 CDS vtiI NC_006905.1 1341905 1342411 D similar to tail assembly protein I in phage lambda; Gifsy-1 prophage VtiI 1341905..1342411 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216221.1 CDS vhsJ NC_006905.1 1342474 1345836 D similar to host specificity protein-J in phage lambda; Gifsy-1 prophage VhsJ 1342474..1345836 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216222.1 CDS SC1235 NC_006905.1 1345875 1346117 D hypothetical protein 1345875..1346117 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216223.1 CDS stf NC_006905.1 1346171 1348849 D IPR000104: Antifreeze protein, type I; side tail fiber protein 1346171..1348849 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216227.1 CDS SC1240 NC_006905.1 1350481 1350789 D hypothetical protein 1350481..1350789 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216228.1 CDS sopB NC_006905.1 1350920 1351990 R SopB protein complement(1350920..1351990) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216229.1 CDS SC1242 NC_006905.1 1351955 1352248 D hypothetical protein 1351955..1352248 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216230.1 CDS mppA NC_006905.1 1352985 1354673 R IPR000914: Bacterial extracellular solute-binding protein, family 5; periplasmic murein peptide-binding protein precurs complement(1352985..1354673) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216231.1 CDS SC1244 NC_006905.1 1354892 1355857 R hypothetical protein complement(1354892..1355857) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216232.1 CDS SC1245 NC_006905.1 1355902 1356051 D hypothetical protein 1355902..1356051 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216233.1 CDS SC1246 NC_006905.1 1356605 1356958 R hypothetical protein complement(1356605..1356958) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216234.1 CDS icdA NC_006905.1 1357089 1357265 D isocitrate dehydrogenase 1357089..1357265 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216235.1 CDS SC1248 NC_006905.1 1357713 1358798 D hypothetical protein 1357713..1358798 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216236.1 CDS SC1249 NC_006905.1 1358991 1359317 D hypothetical protein 1358991..1359317 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216237.1 CDS SC1250 NC_006905.1 1359286 1359501 R hypothetical protein complement(1359286..1359501) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216238.1 CDS envF NC_006905.1 1359823 1360611 R envelope lipoprotein complement(1359823..1360611) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216239.1 CDS msgA NC_006905.1 1361101 1361340 R macrophage survival gene; reduced mouse virulence complement(1361101..1361340) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216240.1 CDS envE NC_006905.1 1361530 1362051 R IPR000772: Ricin B lectin domain; envelope protein complement(1361530..1362051) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216241.1 CDS cspH NC_006905.1 1362466 1362678 R cold shock protein-like protein complement(1362466..1362678) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216242.1 CDS pagD NC_006905.1 1362810 1363139 R PhoP regulated protein complement(1362810..1363139) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216243.1 CDS pagC NC_006905.1 1363885 1364442 D IPR000758: Virulence-related outer membrane protein; PhoP regulated protein: reduced macrophage survival 1363885..1364442 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216244.1 CDS SC1257 NC_006905.1 1365664 1366008 R PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor complement(1365664..1366008) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216247.1 CDS SC1260 NC_006905.1 1366386 1366511 D lipoprotein 1366386..1366511 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216248.1 CDS SC1261 NC_006905.1 1366643 1366816 R hypothetical protein complement(1366643..1366816) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216249.1 CDS ibp NC_006905.1 1367132 1367602 D IPR002068: Heat shock protein Hsp20; molecular chaperone 1367132..1367602 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216250.1 CDS SC1263 NC_006905.1 1367711 1367860 R inner membrane protein complement(1367711..1367860) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216251.1 CDS SC1264 NC_006905.1 1367941 1368984 D hypothetical protein 1367941..1368984 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216252.1 CDS SC1265 NC_006905.1 1369069 1369596 R inner membrane protein complement(1369069..1369596) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216253.1 CDS SC1266 NC_006905.1 1369745 1370059 R outer membrane lipoprotein complement(1369745..1370059) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216254.1 CDS oxd6A NC_006905.1 1370741 1372381 D ABC transporter substrate-binding protein 1370741..1372381 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216255.1 CDS oxd6B NC_006905.1 1372378 1373355 D IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC transporter 1372378..1373355 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216256.1 CDS oxd6C NC_006905.1 1373345 1374157 D ABC transporter 1373345..1374157 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216257.1 CDS oxd6D NC_006905.1 1374151 1374948 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter ATPase 1374151..1374948 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216258.1 CDS SC1271 NC_006905.1 1374942 1375532 D IPR003439: ABC transporter; ABC transporter ATPase 1374942..1375532 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216259.1 CDS oxd6E NC_006905.1 1375614 1376747 R hypothetical protein complement(1375614..1376747) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216260.1 CDS SC1273 NC_006905.1 1376941 1377267 D hypothetical protein 1376941..1377267 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216261.1 CDS yodA NC_006905.1 1377461 1378111 D hypothetical protein 1377461..1378111 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216262.1 CDS aadA NC_006905.1 1378220 1379008 D streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1378220..1379008 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216263.1 CDS SC1276 NC_006905.1 1379099 1379746 D IPR000792: Bacterial regulatory protein, LuxR family; response regulator 1379099..1379746 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216264.1 CDS ycgE NC_006905.1 1379815 1380663 D IPR000551: Bacterial regulatory protein, MerR family; transcriptional regulator 1379815..1380663 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216265.1 CDS SC1278 NC_006905.1 1380918 1381166 R hypothetical protein complement(1380918..1381166) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216266.1 CDS SC1279 NC_006905.1 1381482 1382027 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1381482..1382027 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216267.1 CDS yeaS NC_006905.1 1382224 1382862 D IPR001123: Lysine exporter protein (LYSE/YGGA); leucine export protein LeuE 1382224..1382862 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216268.1 CDS yeaR NC_006905.1 1383035 1383397 D hypothetical protein 1383035..1383397 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216269.1 CDS yoaG NC_006905.1 1383400 1383582 D hypothetical protein 1383400..1383582 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216270.1 CDS nor NC_006905.1 1383812 1384453 D hypothetical protein 1383812..1384453 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216271.1 CDS SC1284 NC_006905.1 1384574 1384759 D hypothetical protein 1384574..1384759 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216272.1 CDS yeaQ NC_006905.1 1384767 1385015 D hypothetical protein 1384767..1385015 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216273.1 CDS yaoF NC_006905.1 1385448 1385699 D hemolysin 1385448..1385699 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216274.1 CDS SC1287 NC_006905.1 1385768 1386079 D hypothetical protein 1385768..1386079 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216275.1 CDS yeaO NC_006905.1 1386065 1386412 R hypothetical protein complement(1386065..1386412) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216276.1 CDS yeaN NC_006905.1 1386531 1387715 R IPR007114: Major facilitator superfamily; MFS family transporter complement(1386531..1387715) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216277.1 CDS yeaM NC_006905.1 1387816 1388610 D IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 1387816..1388610 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216278.1 CDS yeaL NC_006905.1 1388590 1389036 R hypothetical protein complement(1388590..1389036) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216279.1 CDS SC1292 NC_006905.1 1389023 1389175 D hypothetical protein 1389023..1389175 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216280.1 CDS SC1293 NC_006905.1 1389206 1389343 D inner membrane protein 1389206..1389343 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216281.1 CDS yeaK NC_006905.1 1389340 1389867 R hypothetical protein complement(1389340..1389867) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216282.1 CDS yeaJ NC_006905.1 1389908 1391401 R IPR000160: GGDEF; methyl-accepting chemotaxis protein complement(1389908..1391401) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216283.1 CDS yeaH NC_006905.1 1392042 1393328 R IPR006698: Protein of unknown function DUF444; hypothetical protein complement(1392042..1393328) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216284.1 CDS yeaG NC_006905.1 1393451 1395415 R hypothetical protein complement(1393451..1395415) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216285.1 CDS mipA NC_006905.1 1395812 1396558 D scaffolding protein for murein-synthesizing holoenzyme 1395812..1396558 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216286.1 CDS chuR NC_006905.1 1396848 1398044 D IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; arylsulfatase 1396848..1398044 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216287.1 CDS yeaE NC_006905.1 1398141 1398998 D IPR001395: Aldo/keto reductase; aldehyde reductase 1398141..1398998 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216288.1 CDS yeaD NC_006905.1 1399097 1399981 R aldose 1-epimerase complement(1399097..1399981) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216289.1 CDS SC1302 NC_006905.1 1399981 1400295 R hypothetical protein complement(1399981..1400295) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216290.1 CDS gapA NC_006905.1 1400314 1401318 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(1400314..1401318) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216291.1 CDS yeaA NC_006905.1 1401621 1402064 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1401621..1402064 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216292.1 CDS yeaC NC_006905.1 1402106 1402384 D hypothetical protein 1402106..1402384 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216293.1 CDS SC1306 NC_006905.1 1402772 1403002 R IPR001579: Glycoside hydrolase, chitinase active site; hypothetical protein complement(1402772..1403002) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216294.1 CDS ydjL NC_006905.1 1403277 1404353 D IPR002328: Zinc-containing alcohol dehydrogenase; hypothetical protein 1403277..1404353 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216295.1 CDS ydjK NC_006905.1 1404380 1405759 D IPR007114: Major facilitator superfamily; metabolite transport protein 1404380..1405759 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216296.1 CDS ydiJ NC_006905.1 1405770 1406813 D IPR000205: NAD-binding site; IPR002328: Zinc-containing alcohol dehydrogenase; hypothetical protein 1405770..1406813 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216297.1 CDS ydjI NC_006905.1 1406835 1407671 D IPR000771: Ketose-bisphosphate aldolase, class-II; hypothetical protein 1406835..1407671 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216298.1 CDS ydjH NC_006905.1 1407622 1408623 D IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; sugar kinase ydjH 1407622..1408623 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216299.1 CDS ydjG NC_006905.1 1408639 1409616 D IPR001395: Aldo/keto reductase; oxidoreductase ydjG 1408639..1409616 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216300.1 CDS ydjF NC_006905.1 1409746 1410504 D IPR001034: Bacterial regulatory protein, DeoR family; transcriptional regulator YdjF 1409746..1410504 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216301.1 CDS ydjE NC_006905.1 1410640 1411998 D IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; metabolite transport protein 1410640..1411998 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216302.1 CDS pncA NC_006905.1 1412134 1412757 R catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase complement(1412134..1412757) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216303.1 CDS ansA NC_006905.1 1412784 1413872 R converts asparagine to aspartate and ammonia; asparaginase complement(1412784..1413872) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216304.1 CDS sppA NC_006905.1 1413896 1415752 R SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 complement(1413896..1415752) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216305.1 CDS ydjA NC_006905.1 1415926 1416477 D hypothetical protein 1415926..1416477 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216306.1 CDS selD NC_006905.1 1416595 1417638 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1416595..1417638 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216307.1 CDS topB NC_006905.1 1417586 1419592 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1417586..1419592 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216308.1 CDS gdhA NC_006905.1 1419622 1420965 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1419622..1420965) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216309.1 CDS ynjH NC_006905.1 1421204 1421479 D hypothetical protein 1421204..1421479 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216310.1 CDS nudG NC_006905.1 1421439 1421855 R IPR000086: NUDIX hydrolase; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase complement(1421439..1421855) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216311.1 CDS xthA NC_006905.1 1421928 1422734 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1421928..1422734) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216312.1 CDS SC1325 NC_006905.1 1422869 1423048 D hypothetical protein 1422869..1423048 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216313.1 CDS argD NC_006905.1 1423180 1424406 D catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1423180..1424406 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216314.1 CDS astA NC_006905.1 1424397 1425923 D arginine succinyltransferase 1424397..1425923 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216315.1 CDS astE NC_006905.1 1425916 1426884 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1425916..1426884 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216316.1 CDS spy NC_006905.1 1427220 1427705 D periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1427220..1427705 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216317.1 CDS cho NC_006905.1 1427780 1428688 R 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease complement(1427780..1428688) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216318.1 CDS nadE NC_006905.1 1428782 1429609 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1428782..1429609) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216319.1 CDS osmE NC_006905.1 1429828 1430169 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1429828..1430169 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216320.1 CDS celA NC_006905.1 1430470 1430790 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1430470..1430790 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216321.1 CDS celB NC_006905.1 1430873 1432231 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1430873..1432231 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216322.1 CDS celC NC_006905.1 1432282 1432629 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1432282..1432629 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216323.1 CDS celD NC_006905.1 1432640 1433482 D represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1432640..1433482 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216324.1 CDS celF NC_006905.1 1433607 1434962 D IPR001088: Glycoside hydrolase, family 4; phospho-beta-glucosidase 1433607..1434962 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216325.1 CDS celG NC_006905.1 1434975 1435733 D hypothetical protein 1434975..1435733 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216326.1 CDS katE NC_006905.1 1435777 1438029 R Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II complement(1435777..1438029) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216327.1 CDS cedA NC_006905.1 1438394 1438636 D cell division modulator 1438394..1438636 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216328.1 CDS ydjN NC_006905.1 1438739 1440130 R IPR001991: Sodium:dicarboxylate symporter; hypothetical protein complement(1438739..1440130) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216329.2 CDS ydjM NC_006905.1 1440267 1440854 R IPR007404: Predicted membrane-bound metal-dependent hydrolase; hypothetical protein complement(1440267..1440854) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216330.1 CDS yniC NC_006905.1 1441004 1441672 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase complement(1441004..1441672) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216331.1 CDS yniB NC_006905.1 1441821 1442357 D hypothetical protein 1441821..1442357 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216332.1 CDS yniA NC_006905.1 1442400 1443260 R hypothetical protein complement(1442400..1443260) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216333.1 CDS ydiZ NC_006905.1 1443367 1443657 R hypothetical protein complement(1443367..1443657) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216334.1 CDS pfkB NC_006905.1 1443754 1444686 R IPR002173: Carbohydrate kinase, PfkB; 6-phosphofructokinase complement(1443754..1444686) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216335.1 CDS ydiY NC_006905.1 1444975 1445733 D salt-induced outer membrane protein 1444975..1445733 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216336.1 CDS SC1349 NC_006905.1 1445782 1446741 R outer membrane protein complement(1445782..1446741) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216338.1 CDS nucA NC_006905.1 1447194 1448048 D IPR001604: DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 1447194..1448048 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216339.1 CDS thrS NC_006905.1 1448308 1450236 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1448308..1450236 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216340.1 CDS infC NC_006905.1 1450348 1450782 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1450348..1450782 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216341.2 CDS rpmI NC_006905.1 1450878 1451075 D IPR001706: Ribosomal protein L35; 50S ribosomal protein L35 1450878..1451075 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216342.1 CDS rplT NC_006905.1 1451126 1451482 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1451126..1451482 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216343.1 CDS pheS NC_006905.1 1451784 1452767 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1451784..1452767 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216344.1 CDS pheT NC_006905.1 1452783 1455170 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1452783..1455170 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216345.1 CDS ihfA NC_006905.1 1455175 1455474 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1455175..1455474 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216346.1 CDS btuC NC_006905.1 1455677 1456657 D with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1455677..1456657 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216347.1 CDS btuE NC_006905.1 1456749 1457300 D similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; glutathione peroxidase 1456749..1457300 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216348.1 CDS btuD NC_006905.1 1457300 1458049 D ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1457300..1458049 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216349.1 CDS nlpC NC_006905.1 1458126 1458590 D lipoprotein 1458126..1458590 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216350.1 CDS ydiV NC_006905.1 1458904 1459617 D diguanylate cyclase/phosphodiesterase domain-containing protein 1458904..1459617 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216351.1 CDS ydiU NC_006905.1 1459679 1461121 D hypothetical protein 1459679..1461121 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216352.1 CDS ydiE NC_006905.1 1461157 1461348 R hypothetical protein complement(1461157..1461348) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216353.1 CDS aroH NC_006905.1 1461505 1462551 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1461505..1462551) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216354.1 CDS ydiA NC_006905.1 1462707 1463540 R hypothetical protein complement(1462707..1463540) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216355.1 CDS pps NC_006905.1 1463877 1466255 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1463877..1466255 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216356.1 CDS ydiD NC_006905.1 1466297 1467982 R acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase complement(1466297..1467982) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216357.1 CDS ydiT NC_006905.1 1468027 1468320 R IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; ferredoxin complement(1468027..1468320) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216358.1 CDS ydiS NC_006905.1 1468317 1469603 R IPR000205: NAD-binding site; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I; IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;IPR003042: Aromatic-ring hydroxylase; hypothetical protein complement(1468317..1469603) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216359.1 CDS ydiR NC_006905.1 1469660 1470595 R May play a role in a redox process; electron transfer flavoprotein subunit YdiR complement(1469660..1470595) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216360.1 CDS ydiQ NC_006905.1 1470617 1471381 R YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; electron transfer flavoprotein YdiQ complement(1470617..1471381) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216361.1 CDS ydiP NC_006905.1 1471844 1472734 D IPR000005: Helix-turn-helix, AraC type; IPR007113: Cupin domain; AraC family transcriptional regulator 1471844..1472734 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216362.1 CDS ydiO NC_006905.1 1472810 1473961 R may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase complement(1472810..1473961) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216363.1 CDS ydiF NC_006905.1 1473975 1475570 R acetyl-CoA:acetoacetyl-CoA transferase subunit beta complement(1473975..1475570) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216364.1 CDS aroD NC_006905.1 1475725 1476483 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(1475725..1476483) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216365.1 CDS aroE NC_006905.1 1476528 1477394 R YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase complement(1476528..1477394) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216366.1 CDS ydiN NC_006905.1 1477461 1478696 R IPR007114: Major facilitator superfamily; MFS family transporter complement(1477461..1478696) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216367.1 CDS ydiM NC_006905.1 1479060 1480271 R IPR000524: Bacterial regulatory protein, GntR family; IPR005828: General substrate transporter; IPR005829: Sugar transporter superfamily;IPR007114: Major facilitator superfamily; MFS family transporter complement(1479060..1480271) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216368.1 CDS ydiL NC_006905.1 1480412 1480771 R hypothetical protein complement(1480412..1480771) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216369.1 CDS yis2 NC_006905.1 1480941 1481624 R integrase complement(1480941..1481624) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216370.1 CDS SC1383 NC_006905.1 1481795 1482196 R hypothetical protein complement(1481795..1482196) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216371.1 CDS ydiK NC_006905.1 1482543 1483661 R YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; inner membrane protein complement(1482543..1483661) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216372.1 CDS ydiJ NC_006905.1 1483926 1486982 D IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; oxidase 1483926..1486982 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216373.1 CDS ydiI NC_006905.1 1486979 1487389 D IPR003736: Phenylacetic acid degradation-related protein; IPR006683: Thioesterase superfamily; hypothetical protein 1486979..1487389 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216374.1 CDS ydiH NC_006905.1 1487449 1487676 D hypothetical protein 1487449..1487676 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216375.1 CDS ydjN NC_006905.1 1487964 1489310 R IPR001991: Sodium:dicarboxylate symporter; Na+-dicarboxylate symporter complement(1487964..1489310) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216376.1 CDS sufA NC_006905.1 1489737 1490105 D functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1489737..1490105 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216377.1 CDS sufB NC_006905.1 1490114 1491601 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 1490114..1491601 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216378.1 CDS sufC NC_006905.1 1491618 1492364 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1491618..1492364 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216379.1 CDS sufD NC_006905.1 1492339 1493610 D with SufBC activates cysteine desulfurase SufS; cysteine desulfurase 1492339..1493610 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216380.1 CDS sufS NC_006905.1 1493607 1494827 D catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1493607..1494827 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216381.1 CDS ynhA NC_006905.1 1494840 1495256 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1494840..1495256 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216382.1 CDS ynhG NC_006905.1 1495411 1496412 D LysM domain-containing protein 1495411..1496412 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216383.1 CDS lppB NC_006905.1 1496478 1496717 R methyl-accepting chemotaxis protein complement(1496478..1496717) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216384.2 CDS lppB NC_006905.1 1496798 1497040 R methyl-accepting chemotaxis protein complement(1496798..1497040) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216385.1 CDS lpp NC_006905.1 1497123 1497359 R links outer and inner membranes; murein lipoprotein complement(1497123..1497359) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216386.1 CDS pykF NC_006905.1 1497670 1499082 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1497670..1499082) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216387.1 CDS ycjj NC_006905.1 1499484 1500827 R IPR002293: Amino acid/polyamine transporter family I; amino acid permease complement(1499484..1500827) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216388.1 CDS pip NC_006905.1 1500849 1501742 R IPR000379: Esterase/lipase/thioesterase; IPR002410: Prolyl aminopeptidase S33; hydrolase or acyltransferase complement(1500849..1501742) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216389.1 CDS SC1402 NC_006905.1 1501801 1502538 R orf245; IPR003006: Immunoglobulin/major histocompatibility complex; hypothetical protein complement(1501801..1502538) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216390.1 CDS rbsk NC_006905.1 1502550 1503776 R IPR001034: Bacterial regulatory protein, DeoR family; IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; DeoR family transcriptional regulator complement(1502550..1503776) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216391.1 CDS ttrA NC_006905.1 1504099 1507161 R tetrathionate reductase complex subunit A complement(1504099..1507161) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216392.1 CDS ttrC NC_006905.1 1507154 1508176 R tetrathionate reductase complex subunit C complement(1507154..1508176) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216393.1 CDS ttrB NC_006905.1 1508177 1508911 R IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; tetrathionate reductase complex subunit B complement(1508177..1508911) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216394.1 CDS ttrS NC_006905.1 1509093 1510871 D IPR003594: ATP-binding region, ATPase-like; IPR003661: Histidine kinase A, N-terminal; IPR004358: Bacterial sensor protein, C-terminal;IPR005467: Histidine kinase; tetrathionate reductase complex: sensory transduction histidine kinase 1509093..1510871 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216395.1 CDS ttrR NC_006905.1 1510846 1511466 D IPR000792: Bacterial regulatory protein, LuxR family; IPR001789: Response regulator receiver; tetrathionate reductase complex: response regulator 1510846..1511466 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216396.1 CDS SC1409 NC_006905.1 1511513 1511776 D orf70; hypothetical protein 1511513..1511776 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216397.1 CDS SC1410 NC_006905.1 1511872 1512831 R orf319; inner membrane protein complement(1511872..1512831) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216398.1 CDS SC1411 NC_006905.1 1513003 1513731 R orf242; IPR000551: Bacterial regulatory protein, MerR family; MerR family transcriptional regulator complement(1513003..1513731) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216399.1 CDS ssrB NC_006905.1 1513910 1514548 R IPR000792: Bacterial regulatory protein, LuxR family; IPR001789: Response regulator receiver; secretion system transcriptonal activator complement(1513910..1514548) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216400.1 CDS ssrA NC_006905.1 1514579 1517341 R IPR001789: Response regulator receiver; IPR003660: Histidine kinase, HAMP region; IPR004358: Bacterial sensor protein, C-terminal;IPR005467: Histidine kinase; secretion system regulator:sensor component complement(1514579..1517341) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216401.1 CDS ssaB NC_006905.1 1517742 1518143 D secretion system apparatus protein SsaB 1517742..1518143 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216402.1 CDS ssaC NC_006905.1 1518145 1519638 D IPR001775: Bacterial general secretion pathway protein D; IPR003522: Type III secretion system outer membrane G protein; IPR004845: Bacterial type II secretion system protein D; secretion system apparatus protein SsaC 1518145..1519638 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216403.1 CDS ssaD NC_006905.1 1519619 1520830 D secretion system apparatus protein SsaD 1519619..1520830 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216404.1 CDS ssaE NC_006905.1 1520838 1521080 D secretion system effector protein SsaE 1520838..1521080 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216405.1 CDS sseA NC_006905.1 1521289 1521615 D secretion system effector protein SseA 1521289..1521615 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216406.1 CDS sseB NC_006905.1 1521622 1522212 D secretion system effector protein SseB 1521622..1522212 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216407.1 CDS SC1420 NC_006905.1 1522209 1522682 D IPR005415: Gram-negative bacterial type III secretion SycD chaperone; secretion system chaperone protein SscA 1522209..1522682 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216408.1 CDS sseC NC_006905.1 1522685 1524139 D secretion system effector protein SseC 1522685..1524139 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216409.1 CDS sseD NC_006905.1 1524155 1524742 D secretion system effector protein SseD 1524155..1524742 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216410.1 CDS sseE NC_006905.1 1524745 1525161 D secretion system effector SseE 1524745..1525161 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216411.1 CDS SC1424 NC_006905.1 1525213 1525647 D IPR001440: TPR repeat; secretion system chaperone protein SscB 1525213..1525647 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216412.1 CDS sseF NC_006905.1 1525663 1526445 D secretion system effector protein SseF 1525663..1526445 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216413.1 CDS sseG NC_006905.1 1526442 1527131 D secretion system effector protein SseG 1526442..1527131 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216414.1 CDS ssaG NC_006905.1 1527174 1527440 D secretion system apparatus protein SsaG 1527174..1527440 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216415.1 CDS ssaH NC_006905.1 1527418 1527708 D secretion system apparatus protein SsaH 1527418..1527708 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216416.1 CDS ssaI NC_006905.1 1527720 1527968 D secretion system apparatus protein SsaI 1527720..1527968 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216417.1 CDS ssaJ NC_006905.1 1527965 1528714 D similar to the yscJ/mxiJ/prgK family of lipoproteins; IPR003282: Type III secretion system outer membrane K protein; IPR006182: Secretory protein YscJ/FliF; secretion system apparatus protein SsaJ 1527965..1528714 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216418.1 CDS SC1431 NC_006905.1 1528732 1529280 D hypothetical protein 1528732..1529280 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216419.1 CDS ssaK NC_006905.1 1529277 1529951 D secretion system apparatus protein SsaK 1529277..1529951 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216420.1 CDS ssaL NC_006905.1 1529917 1530933 D secretion system apparatus protein SsaL 1529917..1530933 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216421.1 CDS ssaM NC_006905.1 1530991 1531359 D secretion system apparatus protein SsaM 1530991..1531359 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216422.1 CDS ssaV NC_006905.1 1531344 1533389 D with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1531344..1533389 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216423.1 CDS ssaN NC_006905.1 1533379 1534680 D similar to the YscN family of proteins; type III secretion system ATPase 1533379..1534680 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216424.1 CDS ssaO NC_006905.1 1534629 1535060 D secretion system apparatus protein SsaO 1534629..1535060 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216425.1 CDS ssaP NC_006905.1 1535041 1535415 D secretion system apparatus protein SsaP 1535041..1535415 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216426.1 CDS ssaQ NC_006905.1 1535396 1536364 D IPR001172: Flagellar motor switch FliN protein; type III secretion system protein 1535396..1536364 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216427.1 CDS ssaR NC_006905.1 1536432 1537079 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1536432..1537079 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216428.1 CDS ssaS NC_006905.1 1537076 1537342 D similar to YscS of the secretion system of Yersinia; secretion system apparatus protein SsaS 1537076..1537342 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216429.1 CDS ssaT NC_006905.1 1537343 1538122 D similar to YscT of the secretion system of Yersinia; IPR002010: Bacterial export protein, family 1; secretion system apparatus protein SsaT 1537343..1538122 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216430.1 CDS ssaU NC_006905.1 1538119 1539177 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; secretion system apparatus protein SsaU 1538119..1539177 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216431.1 CDS ydhE NC_006905.1 1539650 1541023 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(1539650..1541023) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216432.1 CDS ribE NC_006905.1 1541240 1541881 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1541240..1541881 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216433.1 CDS cfa NC_006905.1 1541923 1543071 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(1541923..1543071) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216434.1 CDS ydhC NC_006905.1 1543361 1544566 R uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC complement(1543361..1544566) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216435.1 CDS ydhB NC_006905.1 1544679 1545611 D IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; DNA-binding transcriptional regulator 1544679..1545611 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216436.1 CDS purR NC_006905.1 1545608 1546633 R binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR complement(1545608..1546633) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216437.1 CDS sodB NC_006905.1 1547101 1547682 R SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase complement(1547101..1547682) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216438.1 CDS ydhO NC_006905.1 1547809 1548663 R IPR000064: NLP/P60; cell wall-associated hydrolase complement(1547809..1548663) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216439.1 CDS ydhD NC_006905.1 1548966 1549313 D hypothetical protein 1548966..1549313 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216440.1 CDS rnt NC_006905.1 1549391 1550038 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1549391..1550038) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216441.1 CDS gloA NC_006905.1 1550139 1550546 R Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I complement(1550139..1550546) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216442.1 CDS nemA NC_006905.1 1550615 1551712 R FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase complement(1550615..1551712) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216443.1 CDS ydhM NC_006905.1 1551771 1552307 R TetR/AcrR family transcriptional regulator complement(1551771..1552307) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216444.1 CDS ydhL NC_006905.1 1552473 1552712 D oxidoreductase 1552473..1552712 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216445.1 CDS ydhF NC_006905.1 1552763 1553659 D IPR001395: Aldo/keto reductase; aldo/keto reductase 1552763..1553659 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216446.1 CDS sodC NC_006905.1 1553739 1554260 D SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1553739..1554260 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216447.1 CDS ydhK NC_006905.1 1554253 1556274 R IPR002016: Haem peroxidase; hypothetical protein complement(1554253..1556274) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216448.1 CDS ydhJ NC_006905.1 1556274 1557176 R multidrug resistance efflux pump complement(1556274..1557176) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216449.1 CDS slyA NC_006905.1 1557574 1558008 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1557574..1558008 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216450.1 CDS slyB NC_006905.1 1558056 1558520 R outer membrane lipoprotein complement(1558056..1558520) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216451.1 CDS anmK NC_006905.1 1558792 1559913 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1558792..1559913 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216452.1 CDS ydhA NC_006905.1 1560001 1560330 D MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1560001..1560330 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216453.1 CDS pdxH NC_006905.1 1560389 1561045 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1560389..1561045 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216454.1 CDS tyrS NC_006905.1 1561172 1562446 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1561172..1562446 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216455.1 CDS pdxY NC_006905.1 1562506 1563366 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1562506..1563366 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216456.1 CDS gst NC_006905.1 1563425 1564030 R IPR004045: Glutathione S-transferase, N-terminal; IPR004046: Glutathione S-transferase, C-terminal; glutathionine S-transferase complement(1563425..1564030) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216457.1 CDS tppB NC_006905.1 1564135 1565640 R mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; tripeptide transporter permease complement(1564135..1565640) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216458.1 CDS nth NC_006905.1 1566241 1566876 R DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III complement(1566241..1566876) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216459.1 CDS ydgQ NC_006905.1 1566876 1567568 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(1566876..1567568) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216460.1 CDS ydgP NC_006905.1 1567571 1568191 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(1567571..1568191) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216461.1 CDS rnfD NC_006905.1 1568195 1569253 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD complement(1568195..1569253) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216462.1 CDS rnfC NC_006905.1 1569254 1571368 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(1569254..1571368) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216463.1 CDS rnfB NC_006905.1 1571361 1571939 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(1571361..1571939) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216464.1 CDS rnfA NC_006905.1 1571939 1572520 R Na(+)-translocating NADH-quinone reductase subunit E complement(1571939..1572520) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216465.1 CDS ydgK NC_006905.1 1572597 1573037 R hypothetical protein complement(1572597..1573037) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216466.1 CDS ydgT NC_006905.1 1573126 1573410 R YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; oriC-binding nucleoid-associated protein complement(1573126..1573410) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216467.1 CDS add NC_006905.1 1575087 1576100 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(1575087..1576100) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216468.1 CDS malY NC_006905.1 1576305 1576700 R MalY protein complement(1576305..1576700) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216469.1 CDS malI NC_006905.1 1576710 1577300 D maltose regulon regulatory protein malI 1576710..1577300 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216470.1 CDS ydgA NC_006905.1 1577358 1578866 R hypothetical protein complement(1577358..1578866) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216471.1 CDS manA NC_006905.1 1578969 1580048 R IPR001250: Mannose-6-phosphate isomerase, type I; mannose-6-phosphate isomerase complement(1578969..1580048) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216472.1 CDS fumA NC_006905.1 1580344 1581990 D IPR000362: Fumarate lyase; fumarase A (fumarate hydratase class I), aerobic isozyme 1580344..1581990 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216473.1 CDS fumC NC_006905.1 1582158 1583561 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1582158..1583561 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216474.1 CDS tus NC_006905.1 1583558 1584487 R binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein complement(1583558..1584487) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216475.1 CDS rstB NC_006905.1 1584563 1585864 R IPR003660: Histidine kinase, HAMP region; IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensor protein RstB complement(1584563..1585864) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216476.1 CDS SC1489 NC_006905.1 1585976 1587676 R IPR005847: Dihydroorotase region; hypothetical protein complement(1585976..1587676) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216477.1 CDS ompN NC_006905.1 1587835 1588968 R IPR000408: Regulator of chromosome condensation, RCC1; IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; outer membrane protein N, non-specific porin complement(1587835..1588968) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216478.1 CDS SC1491 NC_006905.1 1589025 1589270 D hypothetical protein 1589025..1589270 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216479.1 CDS SC1492 NC_006905.1 1589233 1589409 R hypothetical protein complement(1589233..1589409) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216480.1 CDS rstA NC_006905.1 1589448 1590179 R response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA complement(1589448..1590179) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216481.1 CDS ydgC NC_006905.1 1590306 1590641 D hypothetical protein 1590306..1590641 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216482.1 CDS ydgI NC_006905.1 1590703 1592085 R IPR002293: Amino acid/polyamine transporter family I; amino acid transporter complement(1590703..1592085) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216483.1 CDS ydgH NC_006905.1 1592384 1593328 R hypothetical protein complement(1592384..1593328) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216484.1 CDS pntA NC_006905.1 1593855 1595384 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1593855..1595384 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216485.1 CDS pntB NC_006905.1 1595395 1596783 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1595395..1596783 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216486.1 CDS SC1499 NC_006905.1 1598127 1598297 D hypothetical protein 1598127..1598297 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216487.1 CDS ydgF NC_006905.1 1598409 1598771 D with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtJ 1598409..1598771 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216488.1 CDS ydgE NC_006905.1 1598758 1599087 D with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtI 1598758..1599087 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216489.1 CDS ydgD NC_006905.1 1599127 1599948 R IPR001254: Peptidase S1, chymotrypsin family; IPR008256: Peptidase S1B, serine protease V8; protease complement(1599127..1599948) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216490.2 CDS asr NC_006905.1 1600217 1600465 R required for growth and survival under moderately acid conditions; acid shock protein complement(1600217..1600465) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216491.1 CDS ynfM NC_006905.1 1600860 1602113 R IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; MFS familty transport protein complement(1600860..1602113) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216492.1 CDS ynfL NC_006905.1 1602233 1603132 D IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 1602233..1603132 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216493.1 CDS mlc NC_006905.1 1603260 1604480 D IPR000600: ROK family; ptsG and ptsHI transcriptional repressor 1603260..1604480 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216494.1 CDS bioD NC_006905.1 1604605 1605300 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1604605..1605300 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216495.1 CDS opbA NC_006905.1 1606681 1607829 R IPR000644: CBS domain; IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC-type proline/glycine betaine transport systems, ATPase complement(1606681..1607829) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216496.1 CDS opcB NC_006905.1 1607829 1608476 R IPR000515: Binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system, inner membrane component complement(1607829..1608476) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216497.1 CDS opcC NC_006905.1 1608486 1609388 R periplasmic component, ABC transport system complement(1608486..1609388) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216498.1 CDS yehW NC_006905.1 1609417 1610127 R IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC transporter permease complement(1609417..1610127) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216499.1 CDS ynfI NC_006905.1 1610432 1611046 R binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; twin-argninine leader-binding protein DmsD complement(1610432..1611046) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216500.1 CDS ynfH NC_006905.1 1611089 1611946 R dimethylsulfoxide reductase complement(1611089..1611946) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216501.1 CDS dmsB NC_006905.1 1611948 1612370 R IPR000345: Cytochrome c heme-binding site; IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; anaerobic dimethyl sulfoxide reductase subunit B complement(1611948..1612370) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216502.1 CDS ynfF NC_006905.1 1612578 1615013 R IPR006655: Prokaryotic molybdopterin oxidoreductase; dimethyl sulfoxide reductase complement(1612578..1615013) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216503.1 CDS ynfE NC_006905.1 1615112 1617553 R IPR006311: Twin-arginine translocation pathway signal; IPR006655: Prokaryotic molybdopterin oxidoreductase; IPR006656: Molybdopterin oxidoreductase;IPR006657: Molydopterin dinucleotide binding domain;IPR006963: Molybdopterin oxidoreductase Fe4S4 domain; dimethyl sulfoxide reductase, subunit A1 complement(1615112..1617553) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216504.1 CDS ynfD NC_006905.1 1617707 1618015 R outer membrane protein complement(1617707..1618015) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216505.2 CDS ynfC NC_006905.1 1618119 1618829 D hypothetical protein 1618119..1618829 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216506.1 CDS speG NC_006905.1 1618870 1619430 R spermidine N1-acetyltransferase complement(1618870..1619430) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216507.1 CDS ynfB NC_006905.1 1619466 1619807 R hypothetical protein complement(1619466..1619807) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216508.2 CDS ynfA NC_006905.1 1619950 1620285 D IPR003844: Protein of unknown function UPF0060; hypothetical protein 1619950..1620285 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216509.1 CDS rspA NC_006905.1 1620407 1621621 D starvation sensing protein; IPR001354: Mandelate racemase/muconate lactonizing enzyme; dehydratase 1620407..1621621 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216510.1 CDS rspB NC_006905.1 1621632 1622651 D IPR002328: Zinc-containing alcohol dehydrogenase; dehydrogenase 1621632..1622651 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216511.1 CDS ydfJ NC_006905.1 1622705 1624216 D IPR007114: Major facilitator superfamily; membrane transport protein 1622705..1624216 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216512.1 CDS ydfI NC_006905.1 1624227 1625693 D IPR000669: Mannitol dehydrogenase; mannitol dehydrogenase 1624227..1625693 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216513.1 CDS ydfZ NC_006905.1 1625760 1626026 R hypothetical protein complement(1625760..1626026) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216514.1 CDS ydfH NC_006905.1 1626144 1626830 R IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator complement(1626144..1626830) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216515.1 CDS ydfG NC_006905.1 1626960 1627706 R NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase complement(1626960..1627706) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216516.1 CDS dcp NC_006905.1 1627845 1629887 D IPR006025: Neutral zinc metallopeptidases, zinc-binding site; dipeptidyl carboxypeptidase II 1627845..1629887 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216517.1 CDS yciG NC_006905.1 1630180 1630413 D hypothetical protein 1630180..1630413 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216518.1 CDS yciF NC_006905.1 1630285 1630482 R hypothetical protein complement(1630285..1630482) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216519.1 CDS ydeJ NC_006905.1 1630533 1631060 R competence damage-inducible protein A complement(1630533..1631060) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216520.1 CDS ydeI NC_006905.1 1631487 1631879 D hypothetical protein 1631487..1631879 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216521.1 CDS ydeE NC_006905.1 1632553 1633749 R YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; MFS-type transporter YdeE complement(1632553..1633749) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216522.1 CDS ydeD NC_006905.1 1633977 1634879 D IPR000620: Protein of unknown function DUF6; O-acetylserine/cysteine export protein 1633977..1634879 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216523.1 CDS marB NC_006905.1 1634998 1635255 R hypothetical protein complement(1634998..1635255) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216524.1 CDS marA NC_006905.1 1635242 1635625 R transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA complement(1635242..1635625) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216525.1 CDS marR NC_006905.1 1635645 1636079 R Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR complement(1635645..1636079) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216526.1 CDS marC NC_006905.1 1636338 1637003 D protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 1636338..1637003 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216527.1 CDS ydeA NC_006905.1 1637050 1638240 R IPR007114: Major facilitator superfamily; sugar efflux transporter complement(1637050..1638240) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216528.1 CDS yneI NC_006905.1 1639331 1640719 D in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 1639331..1640719 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216529.1 CDS yneH NC_006905.1 1640792 1641718 D catalyzes the formation of glutamate from glutamine; glutaminase 1640792..1641718 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216530.1 CDS yneG NC_006905.1 1641718 1642077 D hypothetical protein 1641718..1642077 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216531.1 CDS yneE NC_006905.1 1642301 1643248 D inner membrane protein 1642301..1643248 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216532.1 CDS SC1545 NC_006905.1 1643304 1643846 R outer membrane protein complement(1643304..1643846) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216533.1 CDS SC1546 NC_006905.1 1643734 1643931 R hypothetical protein complement(1643734..1643931) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216534.1 CDS ompC NC_006905.1 1644563 1645681 D IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; outer membrane protein 1644563..1645681 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216535.1 CDS hybF NC_006905.1 1645822 1646163 R IPR000688: Hydrogenase expression/synthesis, HypA family; hydrogenase complement(1645822..1646163) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216536.1 CDS hupK NC_006905.1 1646176 1646997 R dehydrogenase complement(1646176..1646997) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216537.1 CDS hoxQ NC_006905.1 1647051 1648112 R IPR001052: Rubredoxin; IPR004039: Rubredoxin-type Fe(Cys)4 protein; hydrogenase complement(1647051..1648112) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216538.1 CDS hyaE NC_006905.1 1648130 1648540 R hydrogenase complement(1648130..1648540) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216539.1 CDS hupF NC_006905.1 1648537 1648836 R IPR001109: Hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase complement(1648537..1648836) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216540.1 CDS hupD NC_006905.1 1648836 1649444 R IPR000671: Hydrogen uptake protein; hydrogenase maturation protease complement(1648836..1649444) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216541.1 CDS cybH NC_006905.1 1649450 1650124 R IPR000516: Nickel-dependent hydrogenase b-type cytochrome subunit; Ni/Fe-hydrogenase 1 b-type cytochrome subunit complement(1649450..1650124) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216542.1 CDS mbhL NC_006905.1 1650144 1650947 R IPR001501: Nickel-dependent hydrogenase, large subunit; hydrogenase-1 large subunit complement(1650144..1650947) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216543.1 CDS mbhS NC_006905.1 1650950 1651279 R hydrogenase-1 small subunit complement(1650950..1651279) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216544.1 CDS pqaA NC_006905.1 1651177 1651686 R PhoPQ-regulated protein complement(1651177..1651686) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216545.1 CDS SC1558 NC_006905.1 1652035 1652172 R IPR007114: Major facilitator superfamily; multidrug efflux protein complement(1652035..1652172) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216546.1 CDS SC1559 NC_006905.1 1652136 1652603 R monooxygenase complement(1652136..1652603) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216547.1 CDS treY NC_006905.1 1653209 1654543 R glycosyl hydrolase complement(1653209..1654543) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216548.1 CDS treZ NC_006905.1 1654540 1656324 R alpha amylase complement(1654540..1656324) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216549.1 CDS SC1562 NC_006905.1 1656453 1657238 R outer membrane or secreted lipoprotein complement(1656453..1657238) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216550.1 CDS hdeB NC_006905.1 1657381 1657710 R acid-resistance protein complement(1657381..1657710) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216551.1 CDS osmC NC_006905.1 1658060 1658491 R resistance protein, osmotically inducible complement(1658060..1658491) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216552.1 CDS yddX NC_006905.1 1659003 1659218 D biofilm-dependent modulation protein 1659003..1659218 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216553.1 CDS rpsV NC_006905.1 1659313 1659456 D protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1659313..1659456 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216554.2 CDS sfcA NC_006905.1 1659633 1661330 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1659633..1661330 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216555.1 CDS adhP NC_006905.1 1661616 1662626 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1661616..1662626 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216556.1 CDS fdnI NC_006905.1 1662717 1663373 R nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma complement(1662717..1663373) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216557.1 CDS fdnH NC_006905.1 1663366 1664250 R IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; formate dehydrogenase-N, Fe-S beta subunit, nitrate-inducible complement(1663366..1664250) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216558.2 CDS yddG NC_006905.1 1667589 1668470 D hypothetical protein 1667589..1668470 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216559.1 CDS nmpC NC_006905.1 1668993 1670081 D IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; new outer membrane protein; porin 1668993..1670081 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216560.1 CDS SC1573 NC_006905.1 1670165 1670605 D hypothetical protein 1670165..1670605 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216561.1 CDS smvA NC_006905.1 1670630 1672117 R IPR001411: Tetracycline resistance protein TetB; IPR007114: Major facilitator superfamily; methyl viologen resistance complement(1670630..1672117) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216562.1 CDS SC1575 NC_006905.1 1672235 1672813 D IPR001647: Bacterial regulatory protein TetR, HTH motif; TetR family transcriptional regulator 1672235..1672813 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216563.1 CDS narU NC_006905.1 1673027 1674415 D major facilitator superfamily nitrate extrusion protein 1673027..1674415 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216564.1 CDS narY NC_006905.1 1678244 1679788 D IPR000345: Cytochrome c heme-binding site; nitrate reductase 2 subunit beta 1678244..1679788 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216565.1 CDS narV NC_006905.1 1679788 1681155 D nitrate reductase 2 subunit gamma 1679788..1681155 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216566.1 CDS yddE NC_006905.1 1681260 1682153 D hypothetical protein 1681260..1682153 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216567.1 CDS nhoA NC_006905.1 1682189 1682356 R IPR001447: N-acetyltransferase; arylamine N-acetyltransferase complement(1682189..1682356) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216568.1 CDS SC1581 NC_006905.1 1682657 1683289 R hypothetical protein complement(1682657..1683289) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216569.1 CDS ansP NC_006905.1 1683802 1685295 D IPR002293: Amino acid/polyamine transporter family I; IPR004840: Amino acid permease; IPR004841: Amino acid permease-associated region; L-asparagine APC transporter 1683802..1685295 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216570.1 CDS ygdR NC_006905.1 1685372 1685593 R outer membrane lipoprotein complement(1685372..1685593) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216571.1 CDS yncE NC_006905.1 1685738 1686799 R hypothetical protein complement(1685738..1686799) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216572.2 CDS yncD NC_006905.1 1687063 1689183 D outer membrane receptor 1687063..1689183 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216573.1 CDS yncB NC_006905.1 1690238 1691308 R IPR002085: Zinc-containing alcohol dehydrogenase superfamily; NADP-dependent oxidoreductase complement(1690238..1691308) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216574.1 CDS yncA NC_006905.1 1691487 1692002 D acyltransferase 1691487..1692002 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216575.1 CDS ydcZ NC_006905.1 1692002 1692451 D hypothetical protein 1692002..1692451 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216576.1 CDS ydcY NC_006905.1 1692456 1692689 R hypothetical protein complement(1692456..1692689) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216577.1 CDS srfA NC_006905.1 1692913 1694238 D ssrAB activated gene 1692913..1694238 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216578.1 CDS srfB NC_006905.1 1694243 1697224 D ssrAB activated gene 1694243..1697224 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216579.1 CDS srfC NC_006905.1 1697221 1699365 D ssrAB activated gene: coiled-coil structure 1697221..1699365 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216580.1 CDS ydcX NC_006905.1 1699410 1699673 R inner membrane protein complement(1699410..1699673) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216581.2 CDS ydcW NC_006905.1 1699982 1701406 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(1699982..1701406) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216582.1 CDS ydcR NC_006905.1 1701542 1702966 R IPR000524: Bacterial regulatory protein, GntR family; IPR004839: Aminotransferase, class I and II; GntR family transcriptional regulator complement(1701542..1702966) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216583.1 CDS pdgL NC_006905.1 1703102 1703872 R IPR000755: D-ala-D-ala dipeptidase; periplasmic dipeptidase for D-ala-D-ala digestion in peptidoglycan complement(1703102..1703872) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216584.1 CDS SC1597 NC_006905.1 1704131 1704361 R inner membrane protein complement(1704131..1704361) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216585.1 CDS ugtL NC_006905.1 1704394 1704792 R similar to chitinase from Schizosaccharomyces; hypothetical protein complement(1704394..1704792) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216586.2 CDS sifB NC_006905.1 1705329 1706279 D translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1705329..1706279 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216587.1 CDS yncJ NC_006905.1 1706553 1706783 D hypothetical protein 1706553..1706783 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216588.1 CDS ydcP NC_006905.1 1706784 1708748 R IPR001539: Peptidase U32; collagenase complement(1706784..1708748) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216589.1 CDS ydcN NC_006905.1 1708827 1709363 R oxidoreductase complement(1708827..1709363) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216590.1 CDS ydcO NC_006905.1 1709394 1710632 D IPR000005: Helix-turn-helix, AraC type; IPR004711: Benzoate membrane transport protein; benzoate membrane transport protein 1709394..1710632 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216591.1 CDS ydcL NC_006905.1 1710686 1711312 R outer membrane lipoprotein complement(1710686..1711312) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216592.1 CDS tehB NC_006905.1 1711518 1712114 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(1711518..1712114) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216593.1 CDS tehA NC_006905.1 1712101 1713114 R IPR004695: C4-dicarboxylate transporter/malic acid transport protein; potassium-tellurite ethidium and proflavin transporter complement(1712101..1713114) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216594.1 CDS rimL NC_006905.1 1714199 1714738 R ribosomal-protein-L7/L12-serine acetyltransferase complement(1714199..1714738) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216595.1 CDS sgcX NC_006905.1 1714955 1716073 D cellulase 1714955..1716073 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216596.1 CDS sgcB NC_006905.1 1716070 1716351 D PTS system, enzymeIIB component 1716070..1716351 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216597.1 CDS sgcC NC_006905.1 1716362 1717675 D PTS system enzyme IIC component 1716362..1717675 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216598.1 CDS sgcQ NC_006905.1 1717689 1718495 D IPR005137: BtpA family; nucleoside triphosphatase 1717689..1718495 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216599.1 CDS sgcA NC_006905.1 1718627 1719064 D IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; sugar specific PTS enzyme II 1718627..1719064 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216600.1 CDS sgcE NC_006905.1 1719076 1719708 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; epimerase 1719076..1719708 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216601.1 CDS sgcR NC_006905.1 1719724 1720515 D IPR001034: Bacterial regulatory protein, DeoR family; DeoR family transcriptional regulator 1719724..1720515 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216602.1 CDS aac6 NC_006905.1 1720515 1720952 D cryptic aminoglycoside resistance gene 1720515..1720952 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216603.1 CDS gox NC_006905.1 1720999 1722201 R IPR003009: FMN/related compound-binding core; IPR008259: FMN-dependent alpha-hydroxy acid dehydrogenase, active site; oxidase complement(1720999..1722201) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216604.1 CDS yceI NC_006905.1 1722213 1722788 R IPR007372: YceI; hypothetical protein complement(1722213..1722788) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216605.1 CDS mdoD NC_006905.1 1722984 1724699 R involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D complement(1722984..1724699) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216606.1 CDS ydcj NC_006905.1 1726416 1727759 R IPR000276: Rhodopsin-like GPCR superfamily; hypothetical protein complement(1726416..1727759) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216607.1 CDS ydcI NC_006905.1 1727983 1728975 D IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 1727983..1728975 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216608.1 CDS trg NC_006905.1 1729036 1730661 R IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein;IPR004091: Aspartate chemoreceptor protein; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor complement(1729036..1730661) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216609.1 CDS adh3 NC_006905.1 1730830 1731948 R IPR002328: Zinc-containing alcohol dehydrogenase; alcohol dehydrogenase complement(1730830..1731948) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216610.1 CDS yohL NC_006905.1 1731980 1732360 R hypothetical protein complement(1731980..1732360) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216611.1 CDS dpr NC_006905.1 1732778 1733179 D dipicolinate reductase 1732778..1733179 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216613.1 CDS sseJ NC_006905.1 1734452 1735678 D IPR001087: Lipolytic enzyme, G-D-S-L family; translocated effector: regulated by SPI-2 1734452..1735678 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216614.1 CDS SC1627 NC_006905.1 1735799 1736143 R inner membrane protein complement(1735799..1736143) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216615.1 CDS SC1628 NC_006905.1 1737050 1737280 D periplasmic binding protein 1737050..1737280 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216616.1 CDS yckA NC_006905.1 1737817 1738464 D amino acid ABC transporter permease component 1737817..1738464 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216617.1 CDS gltL NC_006905.1 1738489 1739220 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; polar amino acid ABC transporter ATPase 1738489..1739220 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216618.1 CDS SC1631 NC_006905.1 1739217 1739897 D IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC-type transport system membrane spanning protein 1739217..1739897 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216619.1 CDS SC1632 NC_006905.1 1740034 1740534 D inner membrane protein 1740034..1740534 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216620.1 CDS SC1633 NC_006905.1 1740813 1740962 D hypothetical protein 1740813..1740962 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216621.1 CDS ybcY NC_006905.1 1742046 1742708 D IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase; SAM-dependent methyltransferase 1742046..1742708 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216622.1 CDS ydcF NC_006905.1 1743626 1744426 R hypothetical protein complement(1743626..1744426) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216623.2 CDS hrpA NC_006905.1 1744490 1748335 R involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA complement(1744490..1748335) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216624.1 CDS acpD NC_006905.1 1748593 1749198 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1748593..1749198 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216625.1 CDS SC1638 NC_006905.1 1749195 1749644 R inner membrane protein complement(1749195..1749644) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216626.1 CDS ydbL NC_006905.1 1749787 1750110 R hypothetical protein complement(1749787..1750110) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216627.1 CDS ynbE NC_006905.1 1750118 1750309 R outer membrane lipoprotein complement(1750118..1750309) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216628.1 CDS ydbH NC_006905.1 1750309 1752945 R hypothetical protein complement(1750309..1752945) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216629.1 CDS ldhA NC_006905.1 1753212 1754201 D Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 1753212..1754201 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216630.1 CDS hslJ NC_006905.1 1754312 1754722 D IPR005184: Protein of unknown function DUF306; heat-inducible protein 1754312..1754722 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216631.1 CDS ydbJ NC_006905.1 1754766 1755032 R hypothetical protein complement(1754766..1755032) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216632.1 CDS nifJ NC_006905.1 1755308 1758832 D IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; pyruvate-flavodoxin oxidoreductase 1755308..1758832 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216633.1 CDS ynaF NC_006905.1 1759314 1759748 D IPR006015: Universal stress protein (Usp); hypothetical protein 1759314..1759748 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216634.1 CDS emrE NC_006905.1 1759798 1760136 R IPR000390: Small multidrug resistance protein; membrane transporter of cations complement(1759798..1760136) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216635.1 CDS intR NC_006905.1 1760300 1760440 D lambdoid prophage Rac integrase 1760300..1760440 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216636.1 CDS ydaO NC_006905.1 1760492 1761427 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1760492..1761427 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216637.1 CDS dbpA NC_006905.1 1761471 1762844 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(1761471..1762844) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216638.1 CDS zntB NC_006905.1 1763332 1764315 R zinc transporter complement(1763332..1764315) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216639.1 CDS mcp NC_006905.1 1764539 1765615 R IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(1764539..1765615) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216640.1 CDS SC1653 NC_006905.1 1765626 1765799 R hypothetical protein complement(1765626..1765799) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216641.1 CDS ydaL NC_006905.1 1766008 1766571 R IPR002625: Smr protein/MutS2 C-terminal; Smr domain-containing protein complement(1766008..1766571) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216642.1 CDS ogt NC_006905.1 1766829 1767344 D IPR001497: Methylated-DNA-[protein]-cysteine S-methyltransferase;protein; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1766829..1767344 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216643.2 CDS fnr NC_006905.1 1767540 1768292 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1767540..1768292 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216644.1 CDS ydaA NC_006905.1 1768443 1769390 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1768443..1769390 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216645.1 CDS ynaJ NC_006905.1 1769445 1769831 R hypothetical protein complement(1769445..1769831) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216646.1 CDS ynaI NC_006905.1 1769938 1770969 D IPR006686: Mechanosensitive (MS) ion channel subdomain; hypothetical protein 1769938..1770969 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216647.1 CDS ydcN NC_006905.1 1771052 1771654 R transcriptional regulator complement(1771052..1771654) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216648.1 CDS SC1661 NC_006905.1 1771698 1772384 D hypothetical protein 1771698..1772384 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216649.1 CDS SC1662 NC_006905.1 1772412 1772750 D hypothetical protein 1772412..1772750 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216650.1 CDS SC1663 NC_006905.1 1773513 1774343 R hypothetical protein complement(1773513..1774343) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216651.1 CDS SC1664 NC_006905.1 1776384 1777229 R serine/threonine protein kinase complement(1776384..1777229) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216652.1 CDS cafR NC_006905.1 1777523 1778380 D IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 1777523..1778380 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216653.1 CDS SC1666 NC_006905.1 1778827 1779882 D hypothetical protein 1778827..1779882 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216654.1 CDS SC1667 NC_006905.1 1780096 1780350 R outer membrane lipoprotein complement(1780096..1780350) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216655.1 CDS yjgJ NC_006905.1 1780461 1781051 R AraC family transcriptional regulator complement(1780461..1781051) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216656.1 CDS yjgI NC_006905.1 1781129 1781842 D IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; oxidoreductase 1781129..1781842 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216657.1 CDS SC1670 NC_006905.1 1781933 1782802 R IPR001395: Aldo/keto reductase; aldo/keto reductase complement(1781933..1782802) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216658.1 CDS yjgC NC_006905.1 1783079 1783984 R IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator complement(1783079..1783984) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216659.1 CDS mppA NC_006905.1 1784843 1786744 R periplasmic murein tripeptide transport protein, also negative regulator of mulitple antibiotic resistance complement(1784843..1786744) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216660.1 CDS ycjI NC_006905.1 1786934 1787662 D murein peptide amidase A 1786934..1787662 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216661.1 CDS ycjG NC_006905.1 1787637 1788602 R IPR001354: Mandelate racemase/muconate lactonizing enzyme; chloromuconate cycloisomerase (muconate cycloisomerase) complement(1787637..1788602) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216662.1 CDS tpx NC_006905.1 1788718 1789224 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1788718..1789224 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216663.1 CDS tyrR NC_006905.1 1789313 1790854 R regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR complement(1789313..1790854) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216664.1 CDS ycjF NC_006905.1 1791002 1792063 R hypothetical protein complement(1791002..1792063) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216665.1 CDS ycjX NC_006905.1 1792060 1793463 R IPR007413: YcjX-like protein; ATPase complement(1792060..1793463) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216666.1 CDS pspE NC_006905.1 1793606 1793920 R rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase complement(1793606..1793920) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216667.1 CDS pspD NC_006905.1 1793996 1794181 R peripheral inner membrane phage-shock protein complement(1793996..1794181) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216668.1 CDS pspC NC_006905.1 1794237 1794596 R with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC complement(1794237..1794596) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216669.1 CDS pspB NC_006905.1 1794596 1794820 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(1794596..1794820) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216670.1 CDS pspA NC_006905.1 1794880 1795548 R involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA complement(1794880..1795548) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216671.2 CDS pspF NC_006905.1 1795719 1796699 D transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator 1795719..1796699 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216672.1 CDS sapA NC_006905.1 1796787 1798460 D IPR000914: Bacterial extracellular solute-binding protein, family 5; peptide ABC transporter substrate-binding protein 1796787..1798460 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216673.1 CDS sapB NC_006905.1 1798457 1799422 D peptide ABC transporter 1798457..1799422 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216674.1 CDS sapC NC_006905.1 1799409 1800299 D peptide ABC transporter 1799409..1800299 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216675.1 CDS sapD NC_006905.1 1800299 1801291 D IPR003439: ABC transporter; peptide ABC transporter ATP-binding protein 1800299..1801291 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216676.1 CDS sapF NC_006905.1 1801293 1802099 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; peptide ABC transporter ATP-binding protein 1801293..1802099 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216677.1 CDS ydiV NC_006905.1 1802115 1802822 R IPR001633: EAL domain; hypothetical protein complement(1802115..1802822) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216678.1 CDS SC1691 NC_006905.1 1803288 1804661 R hypothetical protein complement(1803288..1804661) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216679.1 CDS SC1692 NC_006905.1 1804696 1804875 D e6 protein 1804696..1804875 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216680.1 CDS ycjE NC_006905.1 1804850 1805149 D hypothetical protein 1804850..1805149 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216681.1 CDS fabI NC_006905.1 1805267 1806055 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1805267..1806055 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216682.1 CDS yciW NC_006905.1 1806255 1807175 D hypothetical protein 1806255..1807175 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216683.1 CDS rnb NC_006905.1 1807477 1809411 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1807477..1809411 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216684.1 CDS yciR NC_006905.1 1809673 1811655 D c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1809673..1811655 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216685.1 CDS SC1698 NC_006905.1 1811744 1811956 D hypothetical protein 1811744..1811956 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216686.1 CDS yciT NC_006905.1 1812043 1812795 D IPR001034: Bacterial regulatory protein, DeoR family; DeoR family transcriptional regulator 1812043..1812795 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216687.1 CDS osmB NC_006905.1 1813054 1813272 D lipoprotein 1813054..1813272 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216688.1 CDS yciH NC_006905.1 1813392 1813718 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1813392..1813718) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216689.1 CDS pyrF NC_006905.1 1813718 1814455 R OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1813718..1814455) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216690.1 CDS yciM NC_006905.1 1814646 1815815 R IPR001440: TPR repeat; tetratricopeptide repeat protein complement(1814646..1815815) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216691.1 CDS yciS NC_006905.1 1815822 1816130 R hypothetical protein complement(1815822..1816130) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216692.1 CDS pgpB NC_006905.1 1816280 1817044 R IPR000326: PA-phosphatase related phosphoesterase; phosphatidylglycerophosphatase B complement(1816280..1817044) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216693.1 CDS ribA NC_006905.1 1817240 1817830 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1817240..1817830 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216694.1 CDS acnA NC_006905.1 1817886 1820561 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1817886..1820561) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216695.1 CDS SC1708 NC_006905.1 1820946 1821116 R hypothetical protein complement(1820946..1821116) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216696.1 CDS yciX NC_006905.1 1821117 1821302 R hypothetical protein complement(1821117..1821302) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216697.1 CDS cysB NC_006905.1 1821538 1822512 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(1821538..1822512) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216698.1 CDS topA NC_006905.1 1822924 1825521 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1822924..1825521) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216699.1 CDS yciN NC_006905.1 1825924 1826175 D hypothetical protein 1825924..1826175 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216700.1 CDS sohB NC_006905.1 1826217 1827263 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(1826217..1827263) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216701.1 CDS yciK NC_006905.1 1827501 1828262 D IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; short chain dehydrogenase 1827501..1828262 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216702.1 CDS btuR NC_006905.1 1828259 1828849 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1828259..1828849 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216703.1 CDS yciL NC_006905.1 1828936 1829811 R catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B complement(1828936..1829811) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216704.1 CDS yciO NC_006905.1 1829912 1830532 R IPR004388: Sua5/YciO/YrdC/YwlC; hypothetical protein complement(1829912..1830532) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216705.1 CDS trpH NC_006905.1 1830540 1831421 R IPR003141: Phosphoesterase PHP, N-terminal; IPR004013: PHP domain C-terminal region; hypothetical protein complement(1830540..1831421) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216706.1 CDS trpE NC_006905.1 1831682 1833244 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1831682..1833244 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216707.1 CDS trpD NC_006905.1 1833244 1834839 D bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1833244..1834839 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216708.1 CDS trpC NC_006905.1 1834843 1836201 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1834843..1836201 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216709.1 CDS trpB NC_006905.1 1836211 1837404 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1836211..1837404 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216710.1 CDS trpA NC_006905.1 1837404 1838210 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1837404..1838210 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216711.1 CDS yciG NC_006905.1 1838690 1838872 D hypothetical protein 1838690..1838872 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216712.1 CDS yciF NC_006905.1 1838962 1839465 D hypothetical protein 1838962..1839465 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216713.1 CDS yciE NC_006905.1 1839539 1840045 D hypothetical protein 1839539..1840045 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216714.1 CDS ctjC NC_006905.1 1840065 1840943 D hypothetical protein 1840065..1840943 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216715.1 CDS ompW NC_006905.1 1841025 1841663 R receptor for colicin S4; outer membrane protein W complement(1841025..1841663) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216716.1 CDS ykgJ NC_006905.1 1842001 1842405 D hypothetical protein 1842001..1842405 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216717.1 CDS yciC NC_006905.1 1842431 1843174 D hypothetical protein 1842431..1843174 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216718.1 CDS yciB NC_006905.1 1843231 1843770 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1843231..1843770 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216719.1 CDS yciA NC_006905.1 1843931 1844332 D YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1843931..1844332 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216720.1 CDS tonB NC_006905.1 1844391 1845236 R membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transporter complement(1844391..1845236) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216721.1 CDS yciI NC_006905.1 1845337 1845633 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein 1845337..1845633 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216722.1 CDS cls NC_006905.1 1845993 1847453 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1845993..1847453 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216723.1 CDS yciU NC_006905.1 1847487 1847816 D highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 1847487..1847816 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216724.1 CDS cikL NC_006905.1 1847864 1848700 R IPR001622: K+ channel, pore region; IPR003091: Voltage-dependent potassium channel; IPR005820: Cation channel, non-ligand gated; voltage-gated potassium channel complement(1847864..1848700) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216725.1 CDS oppF NC_006905.1 1848748 1849752 R IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; oligopeptide ABC transporter ATP-binding protein complement(1848748..1849752) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216726.1 CDS oppD NC_006905.1 1849749 1850756 R IPR003439: ABC transporter; oligopeptide ABC transporter ATP-binding protein complement(1849749..1850756) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216727.1 CDS oppC NC_006905.1 1850768 1851676 R IPR000515: Binding-protein-dependent transport systems inner membrane component; oligoeptide ABC transporter complement(1850768..1851676) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216728.1 CDS oppB NC_006905.1 1851691 1852611 R IPR000515: Binding-protein-dependent transport systems inner membrane component; oligopeptide transporter permease complement(1851691..1852611) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216729.1 CDS oppA NC_006905.1 1852733 1854481 R IPR000914: Bacterial extracellular solute-binding protein, family 5; oligopeptide ABC transporter substrate-binding protein complement(1852733..1854481) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216730.1 CDS ychE NC_006905.1 1855130 1855777 R hypothetical protein complement(1855130..1855777) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216731.1 CDS adhE NC_006905.1 1856254 1858932 D IPR001670: Iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1856254..1858932 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216732.1 CDS tdk NC_006905.1 1859129 1859746 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(1859129..1859746) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216733.1 CDS hns NC_006905.1 1860409 1860822 D IPR001801: Histone-like nucleoid-structuring protein H-NS; global DNA-binding transcriptional dual regulator H-NS 1860409..1860822 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216734.1 CDS galU NC_006905.1 1860953 1861861 R together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP-glucose-1-phosphate uridylyltransferase complement(1860953..1861861) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216735.1 CDS hnr NC_006905.1 1862064 1863077 R IPR001789: Response regulator receiver; response regulator of RpoS complement(1862064..1863077) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216736.1 CDS ychK NC_006905.1 1863168 1864073 R IPR001423: Protein of unknown function UPF0028; IPR002641: Patatin; hypothetical protein complement(1863168..1864073) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216737.1 CDS ychJ NC_006905.1 1864184 1864642 D hypothetical protein 1864184..1864642 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216738.2 CDS purU NC_006905.1 1864693 1865535 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1864693..1865535 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216740.1 CDS ybeQ NC_006905.1 1866706 1868235 R hypothetical protein complement(1866706..1868235) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216741.1 CDS SC1754 NC_006905.1 1868220 1868435 D hypothetical protein 1868220..1868435 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216742.1 CDS narI NC_006905.1 1868477 1869154 R nitrate reductase 1, cytochrome b(NR), gamma subunit complement(1868477..1869154) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216743.1 CDS narJ NC_006905.1 1869154 1869864 R nitrate reductase 1 subunit delta complement(1869154..1869864) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216744.1 CDS narH NC_006905.1 1869861 1871396 R IPR000345: Cytochrome c heme-binding site; nitrate reductase 1, FeS subunit beta complement(1869861..1871396) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216745.1 CDS narG NC_006905.1 1871393 1875136 R IPR001005: Myb DNA-binding domain; IPR006655: Prokaryotic molybdopterin oxidoreductase; nitrate reductase 1 subunit alpha complement(1871393..1875136) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216746.1 CDS narK NC_006905.1 1875524 1876957 R major facilitator superfamily nitrite extrusion protein complement(1875524..1876957) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216747.1 CDS narX NC_006905.1 1877262 1879058 D IPR003660: Histidine kinase, HAMP region; IPR005467: Histidine kinase; nitrate/nitrite sensor protein NarX 1877262..1879058 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216748.1 CDS narL NC_006905.1 1879051 1879701 D two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1879051..1879701 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216749.1 CDS ychP NC_006905.1 1879702 1881231 R hypothetical protein complement(1879702..1881231) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216750.1 CDS ychN NC_006905.1 1881303 1881656 D hypothetical protein 1881303..1881656 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216751.1 CDS chaB NC_006905.1 1881736 1881966 R in Escherichia coli this protein ly regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator complement(1881736..1881966) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216752.1 CDS chaA NC_006905.1 1882233 1883333 D calcium/sodium:proton antiporter 1882233..1883333 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216753.1 CDS kdsA NC_006905.1 1883387 1884241 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1883387..1884241) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216754.1 CDS ychA NC_006905.1 1884279 1885088 R IPR000504: RNA-binding region RNP-1 (RNA recognition motif); transcriptional regulator complement(1884279..1885088) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216755.1 CDS sirC NC_006905.1 1885092 1885481 R transcriptional regulator complement(1885092..1885481) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216756.1 CDS hemK NC_006905.1 1885478 1886311 R HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1885478..1886311) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216757.1 CDS prfA NC_006905.1 1886311 1887393 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1886311..1887393) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216758.1 CDS hemA NC_006905.1 1887434 1888690 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1887434..1888690) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216759.1 CDS lolB NC_006905.1 1889004 1889627 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; molecular chaperone LolB 1889004..1889627 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216760.1 CDS ipk NC_006905.1 1889624 1890475 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1889624..1890475 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216761.1 CDS prsA NC_006905.1 1890675 1891688 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1890675..1891688 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216762.1 CDS ychM NC_006905.1 1891813 1893498 D role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 1891813..1893498 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216763.1 CDS ychH NC_006905.1 1893543 1893821 R YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein complement(1893543..1893821) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216764.1 CDS pth NC_006905.1 1894073 1894681 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1894073..1894681 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216765.1 CDS ychF NC_006905.1 1894798 1895889 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1894798..1895889 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216766.1 CDS SC1779 NC_006905.1 1896582 1896923 D hypothetical protein 1896582..1896923 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216767.1 CDS SC1780 NC_006905.1 1897458 1897763 D hypothetical protein 1897458..1897763 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216768.1 CDS SC1781 NC_006905.1 1898239 1899504 R hypothetical protein complement(1898239..1899504) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216769.1 CDS mbhS NC_006905.1 1900029 1901117 D IPR001821: Ni-Fe hydrogenase, small subunit; hydrogenase-1 small subunit 1900029..1901117 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216770.1 CDS cybH NC_006905.1 1902927 1903658 D IPR000516: Nickel-dependent hydrogenase b-type cytochrome subunit; hydrogenase 1 b-type cytochrome subunit 1902927..1903658 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216771.1 CDS hyaD NC_006905.1 1903655 1904251 D HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1903655..1904251 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216772.1 CDS hyaE NC_006905.1 1904241 1904645 D involved in processing hydrogenases HyaA and HyaB; hydrogenase-1 operon protein HyaE 1904241..1904645 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216773.1 CDS hyaF NC_006905.1 1904642 1905490 D hydrogenase-1 protein 1904642..1905490 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216774.1 CDS SC1787 NC_006905.1 1908270 1908359 D expressed during stationary phase; hypothetical protein 1908270..1908359 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216775.1 CDS gdh NC_006905.1 1908703 1910028 D IPR000205: NAD-binding site; IPR000209: Peptidase S8, subtilase serine protease; IPR006095: Glu/Leu/Phe/Val dehydrogenase;IPR006096: Glu/Leu/Phe/Val dehydrogenase, C terminal;IPR006097: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; glutamate dehydrogenase 1908703..1910028 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216776.1 CDS treA NC_006905.1 1910242 1911954 D periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1910242..1911954 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216777.1 CDS ymgE NC_006905.1 1912017 1912271 R transglycosylase-associated protein complement(1912017..1912271) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216778.1 CDS ycgR NC_006905.1 1912440 1913174 D hypothetical protein 1912440..1913174 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216779.1 CDS emtA NC_006905.1 1913188 1913799 R IPR000189: Prokaryotic transglycosylase, active site; membrane-bound lytic murein transglycosylase E complement(1913188..1913799) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216780.1 CDS ldcA NC_006905.1 1913971 1914879 D catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1913971..1914879 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216781.1 CDS ycgO NC_006905.1 1914982 1916715 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1914982..1916715 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216782.1 CDS dadX NC_006905.1 1916778 1917848 R catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase complement(1916778..1917848) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216783.1 CDS dadA NC_006905.1 1917862 1919160 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(1917862..1919160) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216784.1 CDS ycgB NC_006905.1 1919483 1921015 D SpoVR family protein 1919483..1921015 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216785.1 CDS fadR NC_006905.1 1921062 1921805 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(1921062..1921805) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216786.1 CDS nhaB NC_006905.1 1922001 1923545 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1922001..1923545 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216787.1 CDS dsbB NC_006905.1 1923687 1924217 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1923687..1924217 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216788.1 CDS yeaR NC_006905.1 1924326 1924667 D hypothetical protein 1924326..1924667 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216789.1 CDS rpmF NC_006905.1 1924738 1924911 R hypothetical protein complement(1924738..1924911) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216790.1 CDS SC1803 NC_006905.1 1925104 1925241 R hypothetical protein complement(1925104..1925241) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216791.2 CDS ycgN NC_006905.1 1925593 1926039 R hypothetical protein complement(1925593..1926039) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216792.1 CDS ycgM NC_006905.1 1926132 1926791 R hypothetical protein complement(1926132..1926791) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216793.1 CDS ycgL NC_006905.1 1926841 1927173 R IPR007840: Protein of unknown function DUF709; hypothetical protein complement(1926841..1927173) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216794.1 CDS minC NC_006905.1 1927260 1927967 D blocks the formation of polar Z-ring septums; septum formation inhibitor 1927260..1927967 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216795.1 CDS minD NC_006905.1 1927991 1928803 D ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1927991..1928803 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216796.1 CDS minE NC_006905.1 1928807 1929073 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1928807..1929073 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216797.1 CDS rnd NC_006905.1 1929195 1930322 R IPR002121: HRDC domain; IPR002562: 3'-5' exonuclease; IPR006292: Ribonuclease D; ribonuclease D complement(1929195..1930322) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216798.2 CDS fadD NC_006905.1 1930394 1932079 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1930394..1932079) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216799.1 CDS SC1812 NC_006905.1 1932099 1932305 D hypothetical protein 1932099..1932305 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216800.1 CDS slp NC_006905.1 1932284 1932865 R outer membrane protein complement(1932284..1932865) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216801.1 CDS yeaZ NC_006905.1 1932937 1933632 R molecular chaperone complement(1932937..1933632) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216802.1 CDS yoaA NC_006905.1 1933690 1935600 R IPR001917: Aminotransferase, class-II; DNA helicase complement(1933690..1935600) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216803.1 CDS yoaB NC_006905.1 1935732 1936076 D IPR006056: YjgF-like protein; hypothetical protein 1935732..1936076 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216804.1 CDS yoaH NC_006905.1 1936082 1936261 R hypothetical protein complement(1936082..1936261) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216805.1 CDS pabB NC_006905.1 1936342 1937706 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 1936342..1937706 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216806.1 CDS yeaB NC_006905.1 1937710 1938288 D IPR000059: Protein of unknown function UPF0035; hypothetical protein 1937710..1938288 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216807.1 CDS sdaA NC_006905.1 1938570 1939916 D L-serine deaminase I/L-threonine deaminase I 1938570..1939916 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216808.1 CDS yoaD NC_006905.1 1939952 1941655 D IPR001633: EAL domain; hypothetical protein 1939952..1941655 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216809.1 CDS yoaE NC_006905.1 1941677 1943236 R inner membrane protein complement(1941677..1943236) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216810.1 CDS SC1823 NC_006905.1 1943224 1943559 R hypothetical protein complement(1943224..1943559) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216811.1 CDS manX NC_006905.1 1943709 1944677 D IPR004720: PTS system sorbose subfamily IIB component; sugar specific PTS family mannose-specific enzyme IIAB 1943709..1944677 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216812.1 CDS manY NC_006905.1 1944730 1945530 D sugar specific PTS family mannose-specific enzyme IIC 1944730..1945530 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216813.1 CDS manZ NC_006905.1 1945534 1946394 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1945534..1946394 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216814.1 CDS yobD NC_006905.1 1946453 1946911 D hypothetical protein 1946453..1946911 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216815.1 CDS yebN NC_006905.1 1947267 1947887 D membrane protein YebN; hypothetical protein 1947267..1947887 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216816.1 CDS rrmA NC_006905.1 1947884 1948693 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase complement(1947884..1948693) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216817.1 CDS ftsI NC_006905.1 1948758 1950503 R penicillin-binding protein-3 complement(1948758..1950503) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216818.1 CDS cspC NC_006905.1 1950723 1950932 R IPR002059: Cold-shock DNA-binding domain; cold shock-like protein CspC complement(1950723..1950932) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216819.1 CDS yobF NC_006905.1 1950945 1951088 R hypothetical protein complement(1950945..1951088) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216820.1 CDS insA NC_006905.1 1951664 1951939 D IPR003220: Insertion element protein; insertion element IS1 1/2/3/5/6 protein insA 1951664..1951939 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216821.1 CDS insB NC_006905.1 1951858 1952361 D IPR005063: IS1 transposase; IS1 transposase 1951858..1952361 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216822.1 CDS yebO NC_006905.1 1952513 1952800 R hypothetical protein complement(1952513..1952800) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216823.1 CDS yobG NC_006905.1 1952871 1953014 R hypothetical protein complement(1952871..1953014) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216824.1 CDS SC1837 NC_006905.1 1953172 1953411 D hypothetical protein 1953172..1953411 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216825.1 CDS kdgR NC_006905.1 1953623 1954414 R IPR005473: Bacterial transcription regulator, ICLR-like family; IclR family transcriptional regulator complement(1953623..1954414) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216826.1 CDS yebQ NC_006905.1 1954590 1955963 D IPR001411: Tetracycline resistance protein TetB; IPR007114: Major facilitator superfamily; transporter 1954590..1955963 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216827.1 CDS htpX NC_006905.1 1956011 1956892 R metalloprotease; heat shock protein HtpX complement(1956011..1956892) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216828.1 CDS prc NC_006905.1 1957086 1959134 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(1957086..1959134) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216829.1 CDS proQ NC_006905.1 1959154 1959840 R affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector complement(1959154..1959840) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216830.1 CDS yebR NC_006905.1 1959938 1960522 R IPR003018: GAF domain; GAF domain-containing protein complement(1959938..1960522) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216831.1 CDS yebS NC_006905.1 1960564 1961847 D hypothetical protein 1960564..1961847 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216832.1 CDS yebT NC_006905.1 1961774 1964449 D hypothetical protein 1961774..1964449 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216833.2 CDS yebU NC_006905.1 1964527 1965966 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1964527..1965966 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216834.1 CDS yebV NC_006905.1 1966081 1966320 D hypothetical protein 1966081..1966320 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216835.1 CDS SC1848 NC_006905.1 1966430 1966621 D hypothetical protein 1966430..1966621 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216836.2 CDS pphA NC_006905.1 1966640 1967290 R Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 complement(1966640..1967290) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216837.1 CDS SC1850 NC_006905.1 1967513 1967677 R inner membrane protein complement(1967513..1967677) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216838.1 CDS SC1851 NC_006905.1 1967739 1967888 R hypothetical protein complement(1967739..1967888) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216839.1 CDS sopE2 NC_006905.1 1967962 1968684 R IPR005414: Salmonella type III secretion SopE effector protein; invasion-associated type III-secreted protein effector complement(1967962..1968684) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216840.1 CDS ycgX NC_006905.1 1969368 1969763 D hypothetical protein 1969368..1969763 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216841.1 CDS SC1854 NC_006905.1 1970091 1970567 D hypothetical protein 1970091..1970567 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216842.1 CDS bls NC_006905.1 1970940 1971359 R IPR000182: GCN5-related N-acetyltransferase; acetyltransferase complement(1970940..1971359) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216843.1 CDS SC1856 NC_006905.1 1971488 1971682 R hypothetical protein complement(1971488..1971682) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216844.1 CDS SC1857 NC_006905.1 1971905 1972051 D hypothetical protein 1971905..1972051 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216845.1 CDS SC1858 NC_006905.1 1972164 1972304 D hypothetical protein 1972164..1972304 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216846.1 CDS tnp NC_006905.1 1972641 1972781 R transposase complement(1972641..1972781) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216847.1 CDS int NC_006905.1 1973747 1974115 D hypothetical protein 1973747..1974115 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216848.1 CDS umuC NC_006905.1 1974550 1974717 R error-prone repair: component of DNA polymerase V with UmuD' complement(1974550..1974717) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216849.1 CDS stbD NC_006905.1 1974734 1975258 D fimbriae usher protein 1974734..1975258 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216850.1 CDS pagO NC_006905.1 1976049 1976963 D PhoPQ-activated integral membrane protein 1976049..1976963 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216851.1 CDS SC1864 NC_006905.1 1977096 1977254 D inner membrane protein 1977096..1977254 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216852.1 CDS SC1865 NC_006905.1 1977264 1977878 D inner membrane protein 1977264..1977878 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216853.1 CDS yebW NC_006905.1 1978078 1978269 D inner membrane lipoprotein 1978078..1978269 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216854.1 CDS yjcS NC_006905.1 1978287 1980266 R hydrolase complement(1978287..1980266) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216855.1 CDS yreP NC_006905.1 1980662 1981792 D IPR000160: GGDEF; hypothetical protein 1980662..1981792 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216856.1 CDS SC1869 NC_006905.1 1982079 1982474 R DNA-binding protein complement(1982079..1982474) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216859.1 CDS SC1872 NC_006905.1 1984202 1985002 D hypothetical protein 1984202..1985002 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216860.1 CDS int NC_006905.1 1987290 1987865 R hypothetical protein complement(1987290..1987865) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216861.1 CDS vtaP NC_006905.1 1987953 1988135 R similar to phage tail assembly protein; Gifsy-1 prophage VtaP complement(1987953..1988135) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216862.1 CDS SC1875 NC_006905.1 1988215 1988508 R hypothetical protein complement(1988215..1988508) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216863.1 CDS int NC_006905.1 1988441 1989181 D phage integrase 1988441..1989181 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216864.1 CDS prpA NC_006905.1 1989378 1989494 R hypothetical protein complement(1989378..1989494) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216865.1 CDS yebY NC_006905.1 1989555 1989908 R hypothetical protein complement(1989555..1989908) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216866.1 CDS yebZ NC_006905.1 1989925 1990800 R IPR000531: TonB-dependent receptor protein; inner membrane protein complement(1989925..1990800) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216867.1 CDS yobA NC_006905.1 1990801 1991175 R hypothetical protein complement(1990801..1991175) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216868.1 CDS holE NC_006905.1 1991313 1991543 D DNA polymerase III subunit theta 1991313..1991543 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216869.1 CDS yobB NC_006905.1 1991651 1992307 D hypothetical protein 1991651..1992307 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216870.1 CDS exoX NC_006905.1 1992331 1993029 D 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1992331..1993029 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216871.1 CDS ptrB NC_006905.1 1993064 1995115 R PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 complement(1993064..1995115) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216872.1 CDS yebE NC_006905.1 1995328 1995987 R hypothetical protein complement(1995328..1995987) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216873.1 CDS yebF NC_006905.1 1996081 1996434 R secreted protein; unknown function; hypothetical protein complement(1996081..1996434) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216874.1 CDS yebG NC_006905.1 1996502 1996792 R DNA damage-inducible protein YebG complement(1996502..1996792) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216875.1 CDS purT NC_006905.1 1996923 1998101 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1996923..1998101 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216876.1 CDS eda NC_006905.1 1998201 1998842 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(1998201..1998842) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216877.1 CDS edd NC_006905.1 1998880 2000190 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(1998880..2000190) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216878.1 CDS zwf NC_006905.1 2000927 2002402 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2000927..2002402) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216879.1 CDS SC1892 NC_006905.1 2002375 2002560 D hypothetical protein 2002375..2002560 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216880.1 CDS yebK NC_006905.1 2002744 2003613 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2002744..2003613 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216881.1 CDS pykA NC_006905.1 2003737 2005179 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2003737..2005179 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216882.1 CDS SC1895 NC_006905.1 2005314 2005715 D hypothetical protein 2005314..2005715 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216883.1 CDS yis2 NC_006905.1 2005886 2006569 D integrase 2005886..2006569 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216884.1 CDS msbB NC_006905.1 2006570 2007625 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(2006570..2007625) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216885.1 CDS yebA NC_006905.1 2007655 2008974 R hypothetical protein complement(2007655..2008974) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216886.2 CDS znuA NC_006905.1 2008990 2009934 R involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein complement(2008990..2009934) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216887.2 CDS znuC NC_006905.1 2010013 2010768 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 2010013..2010768 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216888.1 CDS znuB NC_006905.1 2010765 2011550 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 2010765..2011550 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216889.1 CDS ruvB NC_006905.1 2011629 2012639 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2011629..2012639) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216890.1 CDS ruvA NC_006905.1 2012648 2013259 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2012648..2013259) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216891.1 CDS SC1904 NC_006905.1 2013625 2014575 D hypothetical protein 2013625..2014575 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216892.1 CDS SC1905 NC_006905.1 2014636 2015082 R hypothetical protein complement(2014636..2015082) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216893.1 CDS ruvC NC_006905.1 2015809 2016330 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2015809..2016330) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216894.1 CDS yebC NC_006905.1 2016367 2017107 R IPR002876: Protein of unknown function DUF28; hypothetical protein complement(2016367..2017107) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216895.1 CDS ntpA NC_006905.1 2017137 2017589 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(2017137..2017589) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216896.1 CDS aspS NC_006905.1 2017692 2019464 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2017692..2019464) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216897.1 CDS yecD NC_006905.1 2019789 2020355 D hypothetical protein 2019789..2020355 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216898.1 CDS yecE NC_006905.1 2020352 2021170 D IPR002763: Protein of unknown function DUF72; hypothetical protein 2020352..2021170 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216899.1 CDS yecN NC_006905.1 2021223 2021618 D hypothetical protein 2021223..2021618 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216900.1 CDS yecO NC_006905.1 2021659 2022402 D IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase; hypothetical protein 2021659..2022402 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216901.1 CDS yecP NC_006905.1 2022399 2023370 D hypothetical protein 2022399..2023370 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216902.1 CDS yecM NC_006905.1 2024371 2024940 R IPR002097: Profilin/allergen; hypothetical protein complement(2024371..2024940) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216903.1 CDS argS NC_006905.1 2025177 2026910 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2025177..2026910 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216904.1 CDS pbpA NC_006905.1 2027099 2028970 D penicillin-binding protein 2027099..2028970 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216905.1 CDS SC1918 NC_006905.1 2029072 2030163 R hypothetical protein complement(2029072..2030163) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216906.1 CDS flhE NC_006905.1 2030400 2030792 R flagellar protein complement(2030400..2030792) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216907.1 CDS flhA NC_006905.1 2030792 2032870 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2030792..2032870) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216908.1 CDS flhB NC_006905.1 2032863 2034014 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(2032863..2034014) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216909.2 CDS cheZ NC_006905.1 2034208 2034852 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ complement(2034208..2034852) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216910.1 CDS cheY NC_006905.1 2034863 2035252 R chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY complement(2034863..2035252) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216911.1 CDS cheB NC_006905.1 2035270 2036319 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(2035270..2036319) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216912.1 CDS cheR NC_006905.1 2036316 2037182 R methylates the MCP; chemotaxis methyltransferase CheR complement(2036316..2037182) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216913.1 CDS cheM NC_006905.1 2037336 2039228 R IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein;IPR004091: Aspartate chemoreceptor protein; methyl accepting chemotaxis protein II, aspartate sensor-receptor complement(2037336..2039228) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216914.1 CDS cheW NC_006905.1 2039234 2039737 R IPR002545: CheW-like protein; purine-binding chemotaxis protein complement(2039234..2039737) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216915.1 CDS cheA NC_006905.1 2039758 2041773 R chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA complement(2039758..2041773) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216916.1 CDS motB NC_006905.1 2041778 2042707 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(2041778..2042707) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216917.1 CDS motA NC_006905.1 2042704 2043591 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(2042704..2043591) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216918.1 CDS flhC NC_006905.1 2043716 2044300 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC complement(2043716..2044300) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216919.1 CDS flhD NC_006905.1 2044297 2044647 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD complement(2044297..2044647) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216920.1 CDS SC1933 NC_006905.1 2045320 2045436 D hypothetical protein 2045320..2045436 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216921.1 CDS yecG NC_006905.1 2045433 2045861 D ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspC 2045433..2045861 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216922.1 CDS otsA NC_006905.1 2045879 2047300 R trehalose-6-phosphate synthase complement(2045879..2047300) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216923.1 CDS otsB NC_006905.1 2047275 2048078 R biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase complement(2047275..2048078) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216924.1 CDS araH NC_006905.1 2048594 2049151 R hypothetical protein complement(2048594..2049151) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216925.1 CDS ftnB NC_006905.1 2049702 2050205 D IPR009040: Ferritin-like; ferritin 2049702..2050205 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216926.1 CDS rpi NC_006905.1 2050384 2051022 R hypothetical protein complement(2050384..2051022) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216927.1 CDS yecR NC_006905.1 2051278 2051613 D outer membrane lipoprotein 2051278..2051613 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216928.1 CDS ftn NC_006905.1 2051853 2052350 D cytoplasmic iron storage protein; ferritin 2051853..2052350 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216929.1 CDS yecH NC_006905.1 2052396 2052635 R hypothetical protein complement(2052396..2052635) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216930.1 CDS tyrP NC_006905.1 2052862 2054073 D IPR002091: Aromatic amino acid permease; IPR002422: Amino acid/polyamine transporter family II; HAAAP family tyrosine-specific transport protein 2052862..2054073 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216931.1 CDS yecA NC_006905.1 2054148 2054813 R hypothetical protein complement(2054148..2054813) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216933.1 CDS SC1946 NC_006905.1 2057243 2057575 R hypothetical protein complement(2057243..2057575) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216935.1 CDS pgsA NC_006905.1 2058277 2058825 R IPR000462: CDP-alcohol phosphatidyltransferase; phosphatidylglycerophosphate synthetase complement(2058277..2058825) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216936.1 CDS uvrC NC_006905.1 2058882 2060714 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2058882..2060714) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216937.1 CDS sirA NC_006905.1 2060711 2061367 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(2060711..2061367) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216938.1 CDS SC1951 NC_006905.1 2061338 2061451 D hypothetical protein 2061338..2061451 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216939.1 CDS SC1952 NC_006905.1 2061679 2061834 D hypothetical protein 2061679..2061834 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216940.1 CDS yecF NC_006905.1 2061831 2062055 D hypothetical protein 2061831..2062055 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216941.1 CDS sdiA NC_006905.1 2062122 2062844 R regulates genes involved in cell division; DNA-binding transcriptional activator SdiA complement(2062122..2062844) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216942.1 CDS yecC NC_006905.1 2063077 2063829 R IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; amino-acid ABC transporter ATP-binding protein YecC complement(2063077..2063829) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216943.1 CDS yecS NC_006905.1 2063826 2064494 R IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC-type amino acid transporter permease component complement(2063826..2064494) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216944.1 CDS yedO NC_006905.1 2064515 2065501 R catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase complement(2064515..2065501) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216945.1 CDS fliY NC_006905.1 2065655 2066413 R IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; cystine transporter subunit complement(2065655..2066413) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216946.1 CDS fliZ NC_006905.1 2066602 2067153 R expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; flagella biosynthesis protein FliZ complement(2066602..2067153) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216947.1 CDS fliA NC_006905.1 2067212 2067931 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(2067212..2067931) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216948.1 CDS fliB NC_006905.1 2068128 2069333 R flagellin methylation protein complement(2068128..2069333) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216949.1 CDS fliC+F2048 NC_006905.1 2069412 2070917 R structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin complement(2069412..2070917) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216950.1 CDS SC1963 NC_006905.1 2070935 2071156 R hypothetical protein complement(2070935..2071156) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216951.1 CDS fliD NC_006905.1 2071174 2072577 D involved in flagellin assembly; flagellar capping protein 2071174..2072577 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216952.1 CDS fliS NC_006905.1 2072592 2072999 D flagellin specific chaperone; flagellar protein FliS 2072592..2072999 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216953.1 CDS fliT NC_006905.1 2072999 2073367 D binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2072999..2073367 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216954.1 CDS amyA NC_006905.1 2073439 2074923 D converts 1,4-alpha-D-glucans to maltodextrin; alpha-amylase 2073439..2074923 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216955.1 CDS yedD NC_006905.1 2074963 2075376 R hypothetical protein complement(2074963..2075376) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216956.1 CDS yedE NC_006905.1 2075502 2076767 D inner membrane protein 2075502..2076767 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216957.1 CDS yedF NC_006905.1 2076764 2076997 D IPR001455: Protein of unknown function UPF0033; hypothetical protein 2076764..2076997 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216958.1 CDS SC1971 NC_006905.1 2077295 2077648 D hypothetical protein 2077295..2077648 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216959.1 CDS fliE NC_006905.1 2077769 2078083 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(2077769..2078083) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216960.1 CDS SC1973 NC_006905.1 2078130 2078279 R hypothetical protein complement(2078130..2078279) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216961.1 CDS fliF NC_006905.1 2078300 2079982 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2078300..2079982 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216962.1 CDS fliG NC_006905.1 2079975 2080970 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2079975..2080970 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216963.1 CDS fliH NC_006905.1 2080963 2081670 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2080963..2081670 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216964.1 CDS fliI NC_006905.1 2081670 2083040 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2081670..2083040 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216965.1 CDS fliJ NC_006905.1 2083062 2083505 D rod/hook and filament chaperone; flagellar biosynthesis chaperone 2083062..2083505 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216966.1 CDS fliK NC_006905.1 2083502 2084719 D IPR001635: Flagellar hook-length control protein; flagellar hook-length control protein 2083502..2084719 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216967.2 CDS fliL NC_006905.1 2084824 2085291 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body protein FliL 2084824..2085291 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216968.1 CDS fliM NC_006905.1 2085296 2086300 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2085296..2086300 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216969.1 CDS fliN NC_006905.1 2086297 2086710 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2086297..2086710 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216970.1 CDS fliO NC_006905.1 2086710 2087087 D with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 2086710..2087087 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216971.1 CDS fliP NC_006905.1 2087087 2087824 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2087087..2087824 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216972.1 CDS fliQ NC_006905.1 2087834 2088103 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2087834..2088103 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216973.1 CDS fliR NC_006905.1 2088112 2088906 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2088112..2088906 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216974.1 CDS rcsA NC_006905.1 2089188 2089811 D IPR000792: Bacterial regulatory protein, LuxR family; capsular/exo- polysaccharide synthesis transcriptional regulator 2089188..2089811 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216975.1 CDS dsrB NC_006905.1 2089850 2090044 R hypothetical protein complement(2089850..2090044) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216976.1 CDS yodD NC_006905.1 2090173 2090400 D hypothetical protein 2090173..2090400 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216977.1 CDS yedP NC_006905.1 2090710 2091525 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2090710..2091525 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216978.1 CDS yedQ NC_006905.1 2091504 2093216 R IPR000160: GGDEF; hypothetical protein complement(2091504..2093216) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216979.1 CDS yodC NC_006905.1 2093381 2093626 R hypothetical protein complement(2093381..2093626) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216980.1 CDS yedA NC_006905.1 2094730 2095650 D hypothetical protein 2094730..2095650 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216981.1 CDS vsr NC_006905.1 2095639 2096109 R IPR004603: DNA mismatch endonuclease vsr; DNA mismatch endonuclease, patch repair protein complement(2095639..2096109) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216982.1 CDS dcm NC_006905.1 2096090 2097520 R IPR001525: C-5 cytosine-specific DNA methylase; DNA cytosine methylase complement(2096090..2097520) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216983.1 CDS yedJ NC_006905.1 2097594 2098289 R hypothetical protein complement(2097594..2098289) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216984.1 CDS yedR NC_006905.1 2098369 2098680 R hypothetical protein complement(2098369..2098680) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216985.1 CDS ompS NC_006905.1 2099330 2100523 D IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; porin 2099330..2100523 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216986.1 CDS cspB NC_006905.1 2100782 2101192 R IPR002059: Cold-shock DNA-binding domain; cold-shock protein complement(2100782..2101192) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216987.1 CDS umuC NC_006905.1 2101647 2102915 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(2101647..2102915) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216988.1 CDS umuD NC_006905.1 2102918 2103337 R binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD complement(2102918..2103337) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216989.1 CDS SC2002 NC_006905.1 2103464 2103625 R hypothetical protein complement(2103464..2103625) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216990.1 CDS yeeI NC_006905.1 2104086 2104817 D IPR006025: Neutral zinc metallopeptidases, zinc-binding site; hypothetical protein 2104086..2104817 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216991.1 CDS SC2004 NC_006905.1 2105173 2105343 D hypothetical protein 2105173..2105343 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216992.1 CDS int NC_006905.1 2105357 2105545 D P4-type integrase 2105357..2105545 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216993.1 CDS SC2006 NC_006905.1 2105552 2105656 R hypothetical protein complement(2105552..2105656) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216995.1 CDS SC2008 NC_006905.1 2107147 2107845 D branched chain amino acid transport protein 2107147..2107845 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216996.1 CDS SC2009 NC_006905.1 2107730 2107978 D hypothetical protein 2107730..2107978 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216997.1 CDS SC2010 NC_006905.1 2108166 2108324 R hypothetical protein complement(2108166..2108324) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_216998.1 CDS ybeQ NC_006905.1 2108419 2110356 D hypothetical protein 2108419..2110356 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217000.1 CDS SC2013 NC_006905.1 2112174 2112308 D hypothetical protein 2112174..2112308 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217001.1 CDS yajQ NC_006905.1 2112201 2112305 R hypothetical protein complement(2112201..2112305) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217002.1 CDS SC2015 NC_006905.1 2112353 2112526 D hypothetical protein 2112353..2112526 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217003.1 CDS SC2016 NC_006905.1 2112677 2112931 R hypothetical protein complement(2112677..2112931) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217004.1 CDS amn NC_006905.1 2113048 2114502 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(2113048..2114502) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217005.1 CDS SC2018 NC_006905.1 2114698 2115024 R hypothetical protein complement(2114698..2115024) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217006.1 CDS SC2019 NC_006905.1 2115018 2115404 R hypothetical protein complement(2115018..2115404) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217008.2 CDS yeeO NC_006905.1 2116117 2117574 R hypothetical protein complement(2116117..2117574) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217009.1 CDS SC2022 NC_006905.1 2117814 2117984 R hypothetical protein complement(2117814..2117984) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217010.1 CDS erfK NC_006905.1 2118035 2118964 R hypothetical protein complement(2118035..2118964) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217011.1 CDS cobT NC_006905.1 2119042 2120142 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2119042..2120142) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217012.1 CDS cobS NC_006905.1 2120139 2120882 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(2120139..2120882) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217013.1 CDS cobU NC_006905.1 2120879 2121424 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase complement(2120879..2121424) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217014.1 CDS cbiP NC_006905.1 2121421 2122941 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(2121421..2122941) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217015.1 CDS cbiO NC_006905.1 2122938 2123579 R IPR003439: ABC transporter; synthesis of vitamin B12 adenosyl cobalamide complement(2122938..2123579) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217016.1 CDS cboQ NC_006905.1 2123762 2124442 R synthesis of vitamin B12 adenosyl cobalamide complement(2123762..2124442) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217017.1 CDS cbiN NC_006905.1 2124426 2124707 R periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN complement(2124426..2124707) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217018.2 CDS cbiM NC_006905.1 2124709 2125356 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(2124709..2125356) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217019.1 CDS cbiL NC_006905.1 2125443 2126156 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(2125443..2126156) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217020.1 CDS cbiK NC_006905.1 2126153 2126947 R IPR000508: Signal peptidase; synthesis of vitamin B12 adenosyl cobalamide complement(2126153..2126947) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217021.1 CDS cbiJ NC_006905.1 2126950 2127741 R CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase complement(2126950..2127741) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217022.1 CDS cbiH NC_006905.1 2127738 2128463 R catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C(17)-methyltransferase complement(2127738..2128463) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217023.1 CDS cbiG NC_006905.1 2128463 2129518 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(2128463..2129518) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217024.1 CDS cbiF NC_006905.1 2129499 2130272 R IPR003043: Uroporphiryn-III C-methyltransferase; synthesis of vitamin B12 adenosyl cobalamide complement(2129499..2130272) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217025.1 CDS cbiT NC_006905.1 2130256 2130834 R catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase complement(2130256..2130834) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217026.1 CDS cbiE NC_006905.1 2130824 2131429 R catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase complement(2130824..2131429) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217027.1 CDS cbiD NC_006905.1 2131423 2132562 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2131423..2132562) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217028.1 CDS cbiC NC_006905.1 2132562 2133194 R catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase complement(2132562..2133194) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217029.1 CDS cbiB NC_006905.1 2133205 2134164 R CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein complement(2133205..2134164) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217030.1 CDS cbiA NC_006905.1 2134161 2135540 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2134161..2135540) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217031.1 CDS pocR NC_006905.1 2136138 2137049 R IPR000005: Helix-turn-helix, AraC type; propanediol utilization transcriptional regulator complement(2136138..2137049) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217032.1 CDS pduF NC_006905.1 2137266 2138378 R IPR000425: MIP family; propanediol utilization propanediol diffusion facilitator complement(2137266..2138378) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217033.1 CDS pduA NC_006905.1 2138585 2138869 D IPR000249: Bacterial microcompartments protein; propanediol utilization polyhedral bodies protein 2138585..2138869 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217034.1 CDS pudB NC_006905.1 2138866 2139678 D propanediol utilization polyhedral bodies protein 2138866..2139678 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217035.1 CDS pduC NC_006905.1 2139697 2141361 D IPR003206: Dehydratase, large subunit; propanediol utilization dehydratase large subunit 2139697..2141361 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217036.1 CDS pduD NC_006905.1 2141372 2142046 D propanediol utilization dehydratase, medium subunit 2141372..2142046 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217037.1 CDS pduE NC_006905.1 2142061 2142582 D propanediol utilization dehydratase small subunit 2142061..2142582 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217038.1 CDS pduG NC_006905.1 2142598 2144430 D propanediol utilization diol dehydratase reactivation protein 2142598..2144430 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217039.1 CDS pduH NC_006905.1 2144420 2144770 D propanediol utilization diol dehydratase reactivation protein 2144420..2144770 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217040.1 CDS pduJ NC_006905.1 2144789 2145064 D IPR000249: Bacterial microcompartments protein; propanediol utilization polyhedral bodies protein 2144789..2145064 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217041.1 CDS pduK NC_006905.1 2145068 2145550 D IPR000249: Bacterial microcompartments protein; propanediol utilization polyhedral bodies protein 2145068..2145550 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217042.1 CDS pduL NC_006905.1 2145550 2146182 D hypothetical protein 2145550..2146182 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217043.1 CDS pduM NC_006905.1 2146179 2146670 D hypothetical protein 2146179..2146670 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217044.1 CDS pduN NC_006905.1 2146674 2146949 D IPR004992: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; propanediol utilization polyhedral bodies protein 2146674..2146949 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217045.1 CDS pduO NC_006905.1 2146959 2147969 D IPR002779: Protein of unknown function DUF80; hypothetical protein 2146959..2147969 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217046.1 CDS pduP NC_006905.1 2147966 2149360 D propanediol utilization CoA-dependent propionaldehyde dehydrogenase 2147966..2149360 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217047.1 CDS pduQ NC_006905.1 2149372 2150484 D IPR001670: Iron-containing alcohol dehydrogenase; propanediol utilization propanol dehydrogenase 2149372..2150484 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217048.1 CDS pduS NC_006905.1 2150481 2151836 D IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; propanediol utilization polyhedral bodies protein 2150481..2151836 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217049.1 CDS pduT NC_006905.1 2151839 2152168 D IPR000249: Bacterial microcompartments protein; propanediol utilization polyhedral bodies protein 2151839..2152168 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217051.1 CDS pduU NC_006905.1 2152149 2152292 D propanediol utilization polyhedral bodies protein 2152149..2152292 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217052.1 CDS pduV NC_006905.1 2152297 2152749 D propanediol utilization 2152297..2152749 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217053.1 CDS pduW NC_006905.1 2152734 2153948 D involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol; propionate kinase 2152734..2153948 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217054.1 CDS pduX NC_006905.1 2154006 2154908 D IPR006204: GHMP kinase; hypothetical protein 2154006..2154908 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217055.1 CDS yeeX NC_006905.1 2154942 2155277 R hypothetical protein complement(2154942..2155277) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217056.1 CDS yeeA NC_006905.1 2155522 2156580 R hypothetical protein complement(2155522..2156580) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217057.1 CDS sbmC NC_006905.1 2156699 2157166 R DNA gyrase inhibitor complement(2156699..2157166) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217058.1 CDS dacD NC_006905.1 2157317 2158489 R removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase complement(2157317..2158489) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217059.1 CDS SC2072 NC_006905.1 2158613 2159377 R hydrogen sulfide production: membrane anchoring protein complement(2158613..2159377) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217060.1 CDS phsB NC_006905.1 2159374 2159952 R IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; hydrogen sulfide production: iron- sulfur subunit; electron transfer complement(2159374..2159952) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217061.1 CDS phsA NC_006905.1 2159967 2162243 R IPR006655: Prokaryotic molybdopterin oxidoreductase; hydrogen sulfide production: membrane anchoring protein complement(2159967..2162243) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217062.1 CDS SC2075 NC_006905.1 2162487 2162633 R orfB; hypothetical protein complement(2162487..2162633) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217063.1 CDS sopA NC_006905.1 2163504 2165207 D hypothetical protein 2163504..2165207 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217064.1 CDS sbcB NC_006905.1 2165574 2167004 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2165574..2167004 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217065.1 CDS yeeF NC_006905.1 2167140 2168504 R IPR002293: Amino acid/polyamine transporter family I; IPR004841: Amino acid permease-associated region; amino acid APC transporter complement(2167140..2168504) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217066.1 CDS yeeY NC_006905.1 2168784 2169698 R LysR family transcriptional regulator complement(2168784..2169698) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217067.1 CDS yeeZ NC_006905.1 2169744 2170568 R hypothetical protein complement(2169744..2170568) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217068.1 CDS hisG NC_006905.1 2170918 2171817 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2170918..2171817 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217069.1 CDS hisD NC_006905.1 2171920 2173224 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2171920..2173224 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217070.1 CDS SC2083 NC_006905.1 2173221 2174300 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2173221..2174300 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217071.1 CDS hisB NC_006905.1 2174297 2175364 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2174297..2175364 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217072.1 CDS hisH NC_006905.1 2175361 2175954 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2175361..2175954 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217073.1 CDS hisA NC_006905.1 2175954 2176691 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2175954..2176691 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217074.1 CDS hisF NC_006905.1 2176673 2177449 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2176673..2177449 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217075.1 CDS hisI NC_006905.1 2177443 2178054 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2177443..2178054 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217076.1 CDS wzzB NC_006905.1 2178135 2179172 R regulator of length of O-antigen component of lipopolysaccharide chains complement(2178135..2179172) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217077.1 CDS udg NC_006905.1 2179261 2180427 R UDP-glucose/GDP-mannose dehydrogenase complement(2179261..2180427) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217078.1 CDS gnd NC_006905.1 2180664 2182070 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2180664..2182070) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217079.1 CDS SC2092 NC_006905.1 2182207 2183733 R hypothetical protein complement(2182207..2183733) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217080.1 CDS manB NC_006905.1 2184019 2185389 R IPR005841: Phosphoglucomutase/phosphomannomutase; phosphomannomutase complement(2184019..2185389) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217081.1 CDS manC NC_006905.1 2185404 2186822 R IPR001538: Mannose-6-phosphate isomerase, type II; IPR002048: Calcium-binding EF-hand; IPR007113: Cupin domain; phosphomannomutase complement(2185404..2186822) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217082.1 CDS SC2095 NC_006905.1 2186819 2188051 R hypothetical protein complement(2186819..2188051) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217083.1 CDS SC2096 NC_006905.1 2188005 2189012 R hypothetical protein complement(2188005..2189012) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217084.1 CDS SC2097 NC_006905.1 2188996 2189997 R hypothetical protein complement(2188996..2189997) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217085.1 CDS SC2098 NC_006905.1 2189997 2191076 R IPR001064: Beta and gamma crystallin; O-antigen polymerase complement(2189997..2191076) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217086.1 CDS galF NC_006905.1 2191461 2192483 R together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP-glucose-1-phosphate uridylyltransferase complement(2191461..2192483) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217087.1 CDS wcaM NC_006905.1 2192532 2193935 R WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein complement(2192532..2193935) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217088.1 CDS wcaL NC_006905.1 2193946 2195166 R glycosyl transferase family protein complement(2193946..2195166) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217089.1 CDS wcaK NC_006905.1 2195163 2196443 R pyruvyl transferase complement(2195163..2196443) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217090.1 CDS wzxC NC_006905.1 2196465 2197943 R colanic acid exporter complement(2196465..2197943) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217091.1 CDS wcaJ NC_006905.1 2198045 2199439 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase complement(2198045..2199439) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217092.1 CDS cpsG NC_006905.1 2199493 2200863 R IPR005841: Phosphoglucomutase/phosphomannomutase; phosphomannomutase complement(2199493..2200863) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217093.1 CDS manC NC_006905.1 2200974 2202416 R IPR001538: Mannose-6-phosphate isomerase, type II; IPR005835: Nucleotidyl transferase; IPR006375: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase;IPR007113: Cupin domain; mannose-1-phosphate guanylyltransferase complement(2200974..2202416) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217094.1 CDS wcaI NC_006905.1 2202413 2203636 R glycosyl transferase family protein complement(2202413..2203636) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217095.1 CDS wcaI NC_006905.1 2203633 2204106 R glycosyl transferase in colanic acid biosynthesis complement(2203633..2204106) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217096.1 CDS wcaG NC_006905.1 2204109 2205074 R bifunctional protein in colanic acid biosyntheis; GDP fucose synthetase complement(2204109..2205074) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217097.1 CDS gmd NC_006905.1 2205077 2206198 R IPR002198: Short-chain dehydrogenase/reductase SDR; GDP-D-mannose dehydratase complement(2205077..2206198) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217098.1 CDS wcaF NC_006905.1 2206222 2206776 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF complement(2206222..2206776) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217099.1 CDS wcaE NC_006905.1 2206792 2207538 R IPR001173: Glycosyl transferase, family 2; glycosyl transferase family protein complement(2206792..2207538) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217100.1 CDS wcaD NC_006905.1 2207551 2208765 R essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid biosynthesis protein complement(2207551..2208765) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217101.1 CDS wcaC NC_006905.1 2208740 2209957 R glycosyl transferase family protein complement(2208740..2209957) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217102.1 CDS wcaB NC_006905.1 2209954 2210442 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; colanic acid biosynthesis acetyltransferase WcaB complement(2209954..2210442) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217103.1 CDS wcaA NC_006905.1 2210445 2211287 R IPR001173: Glycosyl transferase, family 2; glycosyl transferase family protein complement(2210445..2211287) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217104.1 CDS wzc NC_006905.1 2211374 2213533 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase complement(2211374..2213533) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217105.1 CDS wzb NC_006905.1 2213530 2213952 R Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; tyrosine phosphatase complement(2213530..2213952) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217106.1 CDS wza NC_006905.1 2213985 2215124 R IPR003715: Polysaccharide export protein; polysaccharide export protein, outer membrane complement(2213985..2215124) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217107.1 CDS SC2120 NC_006905.1 2215198 2215443 D hypothetical protein 2215198..2215443 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217108.1 CDS yegH NC_006905.1 2215799 2217379 D IPR000644: CBS domain; inner membrane protein 2215799..2217379 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217109.1 CDS asmA NC_006905.1 2217465 2219321 R YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; assembly protein complement(2217465..2219321) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217110.1 CDS dcd NC_006905.1 2219360 2219941 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2219360..2219941) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217111.1 CDS udk NC_006905.1 2220032 2220673 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2220032..2220673) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217112.1 CDS SC2125 NC_006905.1 2220749 2220919 R hypothetical protein complement(2220749..2220919) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217113.1 CDS yegE NC_006905.1 2221004 2223994 D IPR000014: PAS domain; IPR000160: GGDEF; IPR000700: PAS-associated, C-terminal;IPR001610: PAC motif;IPR001633: EAL domain;IPR007895: MASE1; PAS/PAC domain/diguanylate cyclase/phosphodiesterase domain-containing protein 2221004..2223994 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217114.1 CDS alkA NC_006905.1 2223962 2224831 R inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; 3-methyladenine DNA glycosylase complement(2223962..2224831) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217115.1 CDS yegD NC_006905.1 2224965 2226317 D IPR001023: Heat shock protein Hsp70; chaperone 2224965..2226317 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217116.1 CDS yegM NC_006905.1 2226805 2227998 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA 2226805..2227998 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217117.1 CDS yegN NC_006905.1 2227998 2231120 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB 2227998..2231120 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217118.1 CDS yegO NC_006905.1 2231121 2234201 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC 2231121..2234201 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217119.1 CDS baeS NC_006905.1 2235607 2237010 D IPR003660: Histidine kinase, HAMP region; IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; signal transduction histidine-protein kinase BaeS 2235607..2237010 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217120.1 CDS baeR NC_006905.1 2237007 2237729 D response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR 2237007..2237729 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217121.1 CDS SC2134 NC_006905.1 2237998 2239200 D hypothetical protein 2237998..2239200 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217122.1 CDS SC2135 NC_006905.1 2239200 2239916 D inner membrane protein 2239200..2239916 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217123.1 CDS SC2136 NC_006905.1 2239927 2242038 D inner membrane protein 2239927..2242038 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217124.1 CDS SC2137 NC_006905.1 2242043 2242762 D hypothetical protein 2242043..2242762 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217125.1 CDS SC2138 NC_006905.1 2242893 2243636 R hypothetical protein complement(2242893..2243636) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217126.1 CDS insA NC_006905.1 2243740 2243874 R hypothetical protein complement(2243740..2243874) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217127.1 CDS SC2140 NC_006905.1 2244086 2244460 R hypothetical protein complement(2244086..2244460) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217128.1 CDS SC2141 NC_006905.1 2244778 2245155 R hypothetical protein complement(2244778..2245155) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217129.1 CDS yibG NC_006905.1 2245567 2245956 R hypothetical protein complement(2245567..2245956) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217130.1 CDS SC2143 NC_006905.1 2247252 2247494 D hypothetical protein 2247252..2247494 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217131.1 CDS yibG NC_006905.1 2247881 2248246 R hypothetical protein complement(2247881..2248246) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217132.1 CDS yibJ NC_006905.1 2248348 2249085 R IPR001826: RHS protein; hypothetical protein complement(2248348..2249085) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217133.1 CDS SC2146 NC_006905.1 2249113 2249646 R IPR006662: Thioredoxin type domain; hypothetical protein complement(2249113..2249646) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217134.1 CDS SC2147 NC_006905.1 2250248 2250691 R hypothetical protein complement(2250248..2250691) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217135.1 CDS SC2148 NC_006905.1 2251238 2251657 R hypothetical protein complement(2251238..2251657) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217136.1 CDS SC2149 NC_006905.1 2252091 2252255 R hypothetical protein complement(2252091..2252255) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217137.1 CDS SC2150 NC_006905.1 2252313 2252930 R hypothetical protein complement(2252313..2252930) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217138.1 CDS yegQ NC_006905.1 2253094 2254455 D IPR001539: Peptidase U32; protease 2253094..2254455 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217139.1 CDS cesT NC_006905.1 2255096 2255512 R hypothetical protein complement(2255096..2255512) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217140.1 CDS SC2153 NC_006905.1 2255634 2255969 R inner membrane protein complement(2255634..2255969) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217141.1 CDS SC2154 NC_006905.1 2256331 2256447 R hypothetical protein complement(2256331..2256447) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217142.1 CDS yegS NC_006905.1 2256531 2257430 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2256531..2257430 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217143.1 CDS fbaB NC_006905.1 2257483 2258535 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(2257483..2258535) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217144.1 CDS yegT NC_006905.1 2258789 2260060 D IPR007114: Major facilitator superfamily; MFS family transporter 2258789..2260060 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217145.1 CDS yegU NC_006905.1 2260057 2261061 D IPR005502: ADP-ribosylglycohydrolase; glycohydrolase 2260057..2261061 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217146.1 CDS yegV NC_006905.1 2261058 2262023 D IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; sugar kinase 2261058..2262023 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217147.1 CDS yegW NC_006905.1 2261997 2262743 R IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator complement(2261997..2262743) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217148.1 CDS thiD NC_006905.1 2262779 2263579 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(2262779..2263579) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217149.1 CDS thiM NC_006905.1 2263566 2264363 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(2263566..2264363) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217150.1 CDS yohN NC_006905.1 2264773 2265087 D hypothetical protein 2264773..2265087 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217151.1 CDS stcD NC_006905.1 2265349 2266356 R hypothetical protein complement(2265349..2266356) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217152.1 CDS stcC NC_006905.1 2266372 2268861 R IPR000015: Fimbrial biogenesis outer membrane usher protein; outer membrane protein complement(2266372..2268861) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217153.1 CDS stcB NC_006905.1 2268875 2269627 R IPR001829: Bacterial pili assembly chaperone; periplasmic chaperone protein complement(2268875..2269627) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217154.1 CDS stcA NC_006905.1 2269614 2270144 R IPR000504: RNA-binding region RNP-1 (RNA recognition motif); fimbrial-like protein complement(2269614..2270144) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217155.1 CDS yehE NC_006905.1 2270423 2270704 R hypothetical protein complement(2270423..2270704) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217156.1 CDS mrp NC_006905.1 2270982 2272091 R IPR000808: Mrp family; ATPase complement(2270982..2272091) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217157.2 CDS metG NC_006905.1 2272256 2274289 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2272256..2274289 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217158.1 CDS yehR NC_006905.1 2274530 2274988 D lipoprotein 2274530..2274988 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217159.1 CDS SC2172 NC_006905.1 2275458 2275688 D hypothetical protein 2275458..2275688 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217160.1 CDS yehS NC_006905.1 2275745 2276269 R hypothetical protein complement(2275745..2276269) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217161.1 CDS yehT NC_006905.1 2276259 2276978 R unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT complement(2276259..2276978) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217162.1 CDS yehU NC_006905.1 2276975 2278615 R sensor/kinase in regulatory system complement(2276975..2278615) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217163.1 CDS yehV NC_006905.1 2278883 2279614 D IPR000551: Bacterial regulatory protein, MerR family; MerR family transcriptional regulator 2278883..2279614 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217164.1 CDS SC2177 NC_006905.1 2279674 2279781 D hypothetical protein 2279674..2279781 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217165.1 CDS yehW NC_006905.1 2279762 2280493 R ABC-type proline/glycine betaine transport systems, permease component complement(2279762..2280493) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217166.1 CDS yehX NC_006905.1 2280477 2281424 R IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; proline/glycine betaine ABC transporter ATPase complement(2280477..2281424) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217167.1 CDS yehY NC_006905.1 2281417 2282586 R IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC-type proline/glycine betaine transport systems, permease component complement(2281417..2282586) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217168.1 CDS yehZ NC_006905.1 2282590 2283507 R ABC transporter substrate-binding protein complement(2282590..2283507) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217169.1 CDS bglX NC_006905.1 2283688 2285985 R IPR001764: Glycoside hydrolase, family 3, N-terminal; IPR002772: Glycoside hydrolase, family 3, C-terminal; beta-D-glucoside glucohydrolase, periplasmic complement(2283688..2285985) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217170.1 CDS dld NC_006905.1 2286252 2287982 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2286252..2287982 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217171.1 CDS pbpG NC_006905.1 2288040 2288987 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2288040..2288987) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217172.1 CDS yohC NC_006905.1 2289153 2289692 R hypothetical protein complement(2289153..2289692) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217173.1 CDS yohD NC_006905.1 2289899 2290468 D DedA family membrane protein 2289899..2290468 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217174.1 CDS yohF NC_006905.1 2290516 2291277 R IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; acetoin dehydrogenase complement(2290516..2291277) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217175.1 CDS yohG NC_006905.1 2291343 2292779 R may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ complement(2291343..2292779) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217176.1 CDS SC2189 NC_006905.1 2292830 2292988 R hypothetical protein complement(2292830..2292988) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217177.1 CDS SC2190 NC_006905.1 2292970 2293167 D hypothetical protein 2292970..2293167 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217178.1 CDS yohI NC_006905.1 2293238 2294176 R IPR001269: Protein of unknown function UPF0034; IPR003009: FMN/related compound-binding core; tRNA-dihydrouridine synthase C complement(2293238..2294176) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217179.1 CDS nhg NC_006905.1 2294285 2295478 R catalyzes the formation of catechol from salicylate; salicylate hydroxylase complement(2294285..2295478) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217180.1 CDS maaI NC_006905.1 2295493 2296137 R IPR004045: Glutathione S-transferase, N-terminal; glutathione S-transferase complement(2295493..2296137) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217181.1 CDS fst NC_006905.1 2296146 2296847 R flutathione S-transferase complement(2296146..2296847) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217182.1 CDS gdo NC_006905.1 2296863 2297900 R IPR007113: Cupin domain; 1,2-dioxygenase complement(2296863..2297900) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217183.1 CDS pcaK NC_006905.1 2297912 2299270 R IPR007114: Major facilitator superfamily; sugar transporter complement(2297912..2299270) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217184.1 CDS gbpR NC_006905.1 2299396 2300304 D IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 2299396..2300304 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217185.1 CDS yohJ NC_006905.1 2300400 2300834 D IPR005538: LrgA family; hypothetical protein 2300400..2300834 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217186.1 CDS yohK NC_006905.1 2300831 2301526 D hypothetical protein 2300831..2301526 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217187.1 CDS cdd NC_006905.1 2301680 2302564 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2301680..2302564 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217188.1 CDS sanA NC_006905.1 2302678 2303460 D hypothetical protein 2302678..2303460 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217189.1 CDS yeiS NC_006905.1 2303463 2303702 D hypothetical protein 2303463..2303702 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217190.1 CDS yeiT NC_006905.1 2303907 2305148 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2303907..2305148 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217191.1 CDS yeiA NC_006905.1 2305142 2306377 D catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2305142..2306377 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217192.1 CDS mglC NC_006905.1 2306452 2307462 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein complement(2306452..2307462) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217193.1 CDS mglB NC_006905.1 2309131 2310129 R galactose ABC transporter permease complement(2309131..2310129) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217194.1 CDS galS NC_006905.1 2310628 2311650 R negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS complement(2310628..2311650) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217195.1 CDS yeiB NC_006905.1 2311800 2312942 R hypothetical protein complement(2311800..2312942) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217196.1 CDS folE NC_006905.1 2312957 2313625 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2312957..2313625) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217197.1 CDS SC2210 NC_006905.1 2313680 2313808 R hypothetical protein complement(2313680..2313808) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217198.1 CDS SC2211 NC_006905.1 2314803 2315192 R IPR001387: Helix-turn-helix motif; transcriptional regulator complement(2314803..2315192) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217199.1 CDS sdhL NC_006905.1 2315197 2316564 R IPR004644: Iron-sulfur-dependent L-serine dehydratase single chain form; IPR005130: Serine dehydratase alpha chain; IPR005131: Serine dehydratase beta chain; D-serine dehydratase complement(2315197..2316564) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217200.1 CDS serB NC_006905.1 2316781 2317668 D phosphoserine phosphatase 2316781..2317668 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217201.1 CDS uhpC NC_006905.1 2317701 2319023 D IPR007114: Major facilitator superfamily; regulatory protein 2317701..2319023 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217202.1 CDS cirA NC_006905.1 2319067 2321058 R Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; colicin I receptor complement(2319067..2321058) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217203.1 CDS lysP NC_006905.1 2321403 2322872 R IPR002293: Amino acid/polyamine transporter family I; IPR004840: Amino acid permease; IPR004841: Amino acid permease-associated region; lysine transporter complement(2321403..2322872) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217204.1 CDS yeiE NC_006905.1 2323062 2323925 R IPR000792: Bacterial regulatory protein, LuxR family; IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; DNA-binding transcriptional regulator complement(2323062..2323925) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217205.1 CDS yeiH NC_006905.1 2324046 2325095 D hypothetical protein 2324046..2325095 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217206.1 CDS nfo NC_006905.1 2325174 2326031 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2325174..2326031 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217207.1 CDS fruA NC_006905.1 2326096 2327784 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC complement(2326096..2327784) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217208.1 CDS fruK NC_006905.1 2327801 2328739 R converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase complement(2327801..2328739) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217209.1 CDS fruF NC_006905.1 2328739 2329869 R phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein complement(2328739..2329869) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217210.1 CDS setB NC_006905.1 2330238 2331419 D IPR007114: Major facilitator superfamily; proton efflux pump 2330238..2331419 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217211.1 CDS tnpR NC_006905.1 2331705 2332913 R transposase of Tn10 complement(2331705..2332913) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217212.1 CDS SC2225 NC_006905.1 2333017 2333487 R hypothetical protein complement(2333017..2333487) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217213.1 CDS SC2226 NC_006905.1 2333489 2333611 R inner membrane protein complement(2333489..2333611) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217214.1 CDS yeiP NC_006905.1 2334577 2335149 D Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2334577..2335149 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217215.1 CDS yeiR NC_006905.1 2335361 2336347 D hypothetical protein 2335361..2336347 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217216.1 CDS yeiU NC_006905.1 2336350 2337015 D IPR000326: PA-phosphatase related phosphoesterase; hypothetical protein 2336350..2337015 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217217.1 CDS spr NC_006905.1 2337509 2338081 D by similarity, Spr seems to have peptidase activity; involved in thermoresistance; outer membrane lipoprotein 2337509..2338081 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217218.1 CDS rtn NC_006905.1 2338406 2339962 D IPR001633: EAL domain; hypothetical protein 2338406..2339962 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217219.1 CDS yejA NC_006905.1 2340069 2341874 D IPR000914: Bacterial extracellular solute-binding protein, family 5; ABC transporter substrate-binding protein 2340069..2341874 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217220.1 CDS yejB NC_006905.1 2341884 2342978 D dipeptide/oligopeptide/nickel ABC transporter permease 2341884..2342978 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217221.1 CDS yejE NC_006905.1 2342978 2344003 D IPR000515: Binding-protein-dependent transport systems inner membrane component; dipeptide/oligopeptide/nickel ABC transporter permease 2342978..2344003 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217222.1 CDS yejF NC_006905.1 2344005 2345594 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter ATPase 2344005..2345594 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217223.1 CDS yejG NC_006905.1 2345598 2345942 R hypothetical protein complement(2345598..2345942) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217224.1 CDS SC2237 NC_006905.1 2346238 2346336 R hypothetical protein complement(2346238..2346336) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217225.1 CDS bcr NC_006905.1 2346333 2347523 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein complement(2346333..2347523) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217226.1 CDS rsuA NC_006905.1 2347551 2348246 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A complement(2347551..2348246) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217227.1 CDS yejH NC_006905.1 2348398 2350158 D IPR001410: DEAD/DEAH box helicase; IPR001650: Helicase, C-terminal; ATP-dependent helicase 2348398..2350158 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217228.1 CDS rplY NC_006905.1 2350283 2350567 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2350283..2350567 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217229.1 CDS SC2242 NC_006905.1 2350676 2351296 R inner membrane protein complement(2350676..2351296) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217230.1 CDS yejK NC_006905.1 2351324 2352331 R nucleoid-associated protein NdpA complement(2351324..2352331) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217231.1 CDS yejL NC_006905.1 2352511 2352738 D hypothetical protein 2352511..2352738 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217232.1 CDS yejM NC_006905.1 2352770 2354530 D IPR000531: TonB-dependent receptor protein; alkaline phosphatase 2352770..2354530 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217233.1 CDS tfa NC_006905.1 2357759 2358163 R bacteriophage tail fiber assembly protein complement(2357759..2358163) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217234.1 CDS vtf NC_006905.1 2358204 2358995 R tail fiber protein of phage complement(2358204..2358995) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217235.1 CDS SC2248 NC_006905.1 2359087 2359269 D hypothetical protein 2359087..2359269 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217236.1 CDS msgA NC_006905.1 2359241 2359501 D virulence protein MsgA-like protein 2359241..2359501 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217237.1 CDS SC2250 NC_006905.1 2359693 2360250 R outer membrane protein complement(2359693..2360250) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217238.1 CDS narP NC_006905.1 2360986 2361633 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2360986..2361633 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217239.1 CDS ccmH NC_006905.1 2361677 2362720 R IPR001440: TPR repeat; IPR005616: Cytochrome C biogenesis protein; heme lyase subunit, cytochrome c-type biogenesis complement(2361677..2362720) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217240.1 CDS ccmG NC_006905.1 2362717 2363274 R IPR004799: Periplasmic protein thiol:disulfide oxidoreductase DsbE; IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; heme lyase disulfide oxidoreductase, cytocyhrome c-type biogenesis complement(2362717..2363274) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217241.1 CDS ccmF NC_006905.1 2363271 2365202 R IPR003567: Cytochrome c-type biogenesis protein; IPR003568: Cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein complement(2363271..2365202) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217242.1 CDS ccmE NC_006905.1 2365199 2365678 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(2365199..2365678) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217243.1 CDS ccmD NC_006905.1 2365675 2365887 R heme exporter protein C, cytochrome c-type biogenesis protein complement(2365675..2365887) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217244.1 CDS ccmC NC_006905.1 2365884 2366630 R IPR002541: Cytochrome c assembly protein; IPR003557: Cytochrome c-type biogenesis protein CcmC; heme ABC exporter complement(2365884..2366630) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217245.1 CDS ccmB NC_006905.1 2366673 2367332 R IPR003544: Cytochrome c-type biogenesis protein CcmB; heme ABC exporter complement(2366673..2367332) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217246.1 CDS ccmA NC_006905.1 2367329 2367946 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(2367329..2367946) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217247.1 CDS napC NC_006905.1 2367967 2368569 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC complement(2367967..2368569) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217248.1 CDS napB NC_006905.1 2368579 2369028 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit complement(2368579..2369028) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217249.1 CDS napH NC_006905.1 2369144 2370013 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(2369144..2370013) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217250.1 CDS napG NC_006905.1 2370000 2370695 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(2370000..2370695) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217251.1 CDS napA NC_006905.1 2370702 2373188 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(2370702..2373188) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217252.1 CDS napD NC_006905.1 2373185 2373715 R periplasmic nitrate reductase complement(2373185..2373715) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217253.1 CDS eco NC_006905.1 2374349 2374837 D serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2374349..2374837 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217254.1 CDS yojI NC_006905.1 2375046 2376689 R efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component complement(2375046..2376689) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217255.1 CDS alkB NC_006905.1 2376765 2377415 R DNA repair system specific for alkylated DNA complement(2376765..2377415) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217256.1 CDS ada NC_006905.1 2377418 2378479 R bifunctional; IPR000005: Helix-turn-helix, AraC type; IPR001497: Methylated-DNA-[protein]-cysteine S-methyltransferase;protein,; IPR004026: Metal binding domain of Ada;IPR008332: Methylguanine DNA methyltransferase, ribonuclease-like;protein; O6-methylguanine-DNA methyltransferase/transcription activator/repressor complement(2377418..2378479) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217257.1 CDS apbE NC_006905.1 2378560 2379612 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE complement(2378560..2379612) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217258.1 CDS ompC NC_006905.1 2379727 2380863 R allows for ions and hydrophilic solutes to cross the outer membrane; porin complement(2379727..2380863) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217259.1 CDS yojN NC_006905.1 2381592 2384261 D IPR005467: Histidine kinase; IPR008207: Hpt; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2381592..2384261 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217260.1 CDS rcsB NC_006905.1 2384233 2384928 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2384233..2384928 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217261.1 CDS SC2274 NC_006905.1 2385030 2387876 R IPR001789: Response regulator receiver; IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; hybrid sensory kinase in two-component regulatory system with RcsB and YojN complement(2385030..2387876) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217262.1 CDS gyrA NC_006905.1 2387994 2390630 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(2387994..2390630) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217263.1 CDS dgoA NC_006905.1 2391040 2392242 R dehydratase complement(2391040..2392242) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217264.1 CDS tub NC_006905.1 2392257 2393204 R IPR007114: Major facilitator superfamily; permease complement(2392257..2393204) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217265.1 CDS ntrA NC_006905.1 2393820 2394515 D GntR family transcriptional regulator 2393820..2394515 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217266.1 CDS ubiG NC_006905.1 2394547 2395326 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2394547..2395326 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217267.1 CDS nrdA NC_006905.1 2395682 2397967 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2395682..2397967 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217268.1 CDS nrdB NC_006905.1 2398080 2399210 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2398080..2399210 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217269.1 CDS yfaE NC_006905.1 2399210 2399464 D plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin 2399210..2399464 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217270.1 CDS SC2283 NC_006905.1 2399466 2400752 R IPR007114: Major facilitator superfamily; permease complement(2399466..2400752) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217271.1 CDS yvbU NC_006905.1 2400818 2401696 D IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; LysR family transcriptional regulator 2400818..2401696 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217272.1 CDS glpQ NC_006905.1 2401812 2402882 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(2401812..2402882) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217273.1 CDS glpT NC_006905.1 2402887 2404245 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter complement(2402887..2404245) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217274.1 CDS glpA NC_006905.1 2404517 2406145 D anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 2404517..2406145 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217275.1 CDS glpB NC_006905.1 2406135 2407394 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2406135..2407394 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217276.1 CDS glpC NC_006905.1 2407391 2408581 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2407391..2408581 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217277.1 CDS elaD NC_006905.1 2409007 2410029 D similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; deubiquitinase 2409007..2410029 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217278.1 CDS cinA NC_006905.1 2410139 2410324 R hypothetical protein complement(2410139..2410324) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217279.1 CDS yfaU NC_006905.1 2410321 2411124 R IPR005000: HpcH/HpaI aldolase; aldolase complement(2410321..2411124) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217280.1 CDS yfaV NC_006905.1 2411150 2412439 R IPR007114: Major facilitator superfamily; MFS family transporter complement(2411150..2412439) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217281.1 CDS yfaW NC_006905.1 2412495 2413700 R IPR001354: Mandelate racemase/muconate lactonizing enzyme; galactonate dehydratase complement(2412495..2413700) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217282.1 CDS yfaX NC_006905.1 2413714 2414496 R IPR005473: Bacterial transcription regulator, ICLR-like family; transcriptional regulator complement(2413714..2414496) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217283.1 CDS cinA NC_006905.1 2414746 2415942 R IPR001453: Molybdenum cofactor biosynthesis protein; competence damage-inducible protein A complement(2414746..2415942) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217284.1 CDS yfaO NC_006905.1 2416877 2417302 D IPR000086: NUDIX hydrolase; IPR002667: Isopentenyl-diphosphate delta-isomerase; hypothetical protein 2416877..2417302 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217285.1 CDS ais NC_006905.1 2417347 2417952 R aluminum resistance protein complement(2417347..2417952) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217286.1 CDS yfbE NC_006905.1 2418251 2419390 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2418251..2419390 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217287.1 CDS pmrF NC_006905.1 2419393 2420376 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2419393..2420376 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217288.1 CDS yfbH NC_006905.1 2422351 2423250 D hypothetical protein 2422351..2423250 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217289.1 CDS arnT NC_006905.1 2423247 2424893 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2423247..2424893 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217290.1 CDS yfbW NC_006905.1 2424890 2425225 D inner membrane protein 2424890..2425225 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217291.1 CDS yfbJ NC_006905.1 2425225 2425602 D hypothetical protein 2425225..2425602 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217292.1 CDS menE NC_006905.1 2425952 2427319 R IPR000873: AMP-dependent synthetase and ligase; O-succinylbenzoic acid--CoA ligase complement(2425952..2427319) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217293.1 CDS menC NC_006905.1 2427316 2428278 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(2427316..2428278) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217294.1 CDS menB NC_006905.1 2428278 2429135 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(2428278..2429135) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217295.1 CDS yfbB NC_006905.1 2429150 2429908 R catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase complement(2429150..2429908) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217296.1 CDS menD NC_006905.1 2429905 2431575 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2429905..2431575) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217297.1 CDS menF NC_006905.1 2431661 2432956 R synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase complement(2431661..2432956) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217298.1 CDS elaB NC_006905.1 2433057 2433362 R hypothetical protein complement(2433057..2433362) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217299.1 CDS elaA NC_006905.1 2433417 2433878 R hypothetical protein complement(2433417..2433878) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217300.2 CDS elaC NC_006905.1 2433939 2434856 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2433939..2434856 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217301.1 CDS cheV NC_006905.1 2434922 2435923 D IPR001789: Response regulator receiver; IPR002545: CheW-like protein; chemotaxis signal transduction protein 2434922..2435923 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217302.1 CDS yfbK NC_006905.1 2435964 2437745 R IPR002035: von Willebrand factor, type A; von Willebrand factor A complement(2435964..2437745) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217303.1 CDS nuoN NC_006905.1 2438750 2440207 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(2438750..2440207) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217304.1 CDS nuoM NC_006905.1 2440214 2441743 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(2440214..2441743) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217305.1 CDS nuoL NC_006905.1 2442057 2443898 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(2442057..2443898) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217306.1 CDS nuoK NC_006905.1 2443895 2444197 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(2443895..2444197) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217307.1 CDS nuoJ NC_006905.1 2444194 2444748 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(2444194..2444748) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217308.1 CDS nuoI NC_006905.1 2444759 2445301 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2444759..2445301) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217309.1 CDS nuoH NC_006905.1 2445316 2446293 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(2445316..2446293) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217310.1 CDS nuoG NC_006905.1 2446290 2449022 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(2446290..2449022) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217311.1 CDS nuoF NC_006905.1 2449047 2450384 R shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F complement(2449047..2450384) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217312.1 CDS nuoE NC_006905.1 2450381 2450881 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(2450381..2450881) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217313.1 CDS nuoC NC_006905.1 2450884 2452686 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(2450884..2452686) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217314.1 CDS nuoB NC_006905.1 2452773 2453435 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2452773..2453435) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217315.1 CDS nuoA NC_006905.1 2453451 2453894 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(2453451..2453894) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217316.1 CDS SC2329 NC_006905.1 2454289 2454441 R hypothetical protein complement(2454289..2454441) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217317.1 CDS lrhA NC_006905.1 2454521 2455459 R IPR000169: Eukaryotic thiol (cysteine) protease; IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator complement(2454521..2455459) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217318.1 CDS SC2331 NC_006905.1 2456125 2456310 R hypothetical protein complement(2456125..2456310) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217319.1 CDS yfbQ NC_006905.1 2456392 2457606 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase 2456392..2457606 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217320.1 CDS yfbR NC_006905.1 2457700 2458299 D hypothetical protein 2457700..2458299 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217321.1 CDS yfbS NC_006905.1 2458405 2460231 R IPR001898: Sodium/sulphate symporter; response regulator complement(2458405..2460231) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217322.2 CDS yfbT NC_006905.1 2460308 2460967 R IPR005833: Haloacid dehalogenase/epoxide hydrolase; phosphatase complement(2460308..2460967) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217323.1 CDS yfbU NC_006905.1 2460978 2461472 R IPR005587: YfbU; hypothetical protein complement(2460978..2461472) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217324.1 CDS yfbV NC_006905.1 2461555 2462010 R hypothetical protein complement(2461555..2462010) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217325.1 CDS ackA NC_006905.1 2462350 2463552 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2462350..2463552 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217326.1 CDS pta NC_006905.1 2463629 2465773 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2463629..2465773 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217327.1 CDS yfcC NC_006905.1 2465991 2467511 D IPR006162: Phosphopantetheine attachment site; hypothetical protein 2465991..2467511 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217328.1 CDS tktC NC_006905.1 2467560 2468513 R transketolase complement(2467560..2468513) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217329.1 CDS tktN NC_006905.1 2468506 2469336 R transketolase complement(2468506..2469336) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217330.2 CDS ulaA NC_006905.1 2469333 2470730 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2469333..2470730) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217331.1 CDS SC2344 NC_006905.1 2470745 2471017 R hypothetical protein complement(2470745..2471017) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217332.1 CDS ptxA NC_006905.1 2471098 2471541 R IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system complement(2471098..2471541) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217333.1 CDS gntR NC_006905.1 2471794 2472813 D IPR000843: Bacterial regulatory protein LacI, HTH motif; transcriptional regulator 2471794..2472813 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217334.1 CDS yfcD NC_006905.1 2472819 2473373 R IPR002667: Isopentenyl-diphosphate delta-isomerase; hypothetical protein complement(2472819..2473373) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217335.1 CDS yfcE NC_006905.1 2473430 2473981 R IPR000979: Protein of unknown function UPF0025; IPR004843: Metallo-phosphoesterase; phosphodiesterase complement(2473430..2473981) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217336.1 CDS yfcF NC_006905.1 2474037 2474681 R IPR004045: Glutathione S-transferase, N-terminal; glutathione-S-transferase complement(2474037..2474681) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217337.1 CDS yfcG NC_006905.1 2474824 2475471 D IPR004045: Glutathione S-transferase, N-terminal; IPR004046: Glutathione S-transferase, C-terminal; glutathione S-transferase 2474824..2475471 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217338.1 CDS yfcH NC_006905.1 2475597 2476490 D hypothetical protein 2475597..2476490 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217339.1 CDS hisP NC_006905.1 2476542 2477318 R IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; histidine/lysine/arginine/ornithine transporter subunit complement(2476542..2477318) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217340.1 CDS hisM NC_006905.1 2477329 2478036 R IPR000515: Binding-protein-dependent transport systems inner membrane component; histidine and lysine/arginine/ornithine ABC transporter complement(2477329..2478036) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217341.1 CDS hisQ NC_006905.1 2478033 2478719 R IPR000515: Binding-protein-dependent transport systems inner membrane component; lysine/arginine/ornithine ABC transporter complement(2478033..2478719) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217342.1 CDS hisJ NC_006905.1 2478902 2479684 R IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; histidine ABC transporter ATP-binding protein complement(2478902..2479684) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217343.1 CDS argT NC_006905.1 2479922 2480704 R IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; lysine/arginine/ornithine ABC transporter ATP-binding protein complement(2479922..2480704) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217344.1 CDS SC2357 NC_006905.1 2480824 2480976 R hypothetical protein complement(2480824..2480976) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217345.1 CDS ubiX NC_006905.1 2480992 2481561 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2480992..2481561) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217346.1 CDS rocE NC_006905.1 2481588 2482994 R IPR002293: Amino acid/polyamine transporter family I; amino acid transporter complement(2481588..2482994) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217347.1 CDS SC2360 NC_006905.1 2483058 2484161 R hypothetical protein complement(2483058..2484161) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217348.1 CDS SC2361 NC_006905.1 2484163 2485584 R IPR002293: Amino acid/polyamine transporter family I; amino acid transporter complement(2484163..2485584) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217349.1 CDS dcdA NC_006905.1 2485675 2487072 R IPR000183: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase complement(2485675..2487072) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217350.1 CDS rocR NC_006905.1 2487283 2488710 D IPR000014: PAS domain; IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; regulatory protein 2487283..2488710 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217351.1 CDS purF NC_006905.1 2488746 2490263 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2488746..2490263) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217352.1 CDS cvpA NC_006905.1 2490301 2490789 R membrane protein required for colicin V production; colicin V production protein complement(2490301..2490789) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217353.1 CDS dedD NC_006905.1 2491100 2491774 R IPR000694: Proline-rich region; hypothetical protein complement(2491100..2491774) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217354.1 CDS folC NC_006905.1 2491764 2493032 R IPR001645: Folylpolyglutamate synthetase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(2491764..2493032) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217355.2 CDS accD NC_006905.1 2493100 2494014 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(2493100..2494014) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217356.1 CDS dedA NC_006905.1 2494164 2494823 R IPR000252: DedA family; hypothetical protein complement(2494164..2494823) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217357.1 CDS truA NC_006905.1 2494872 2495684 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2494872..2495684) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217358.1 CDS usg NC_006905.1 2495684 2496697 R semialdehyde dehydrogenase complement(2495684..2496697) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217359.1 CDS pdxB NC_006905.1 2496765 2498015 R catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase complement(2496765..2498015) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217360.2 CDS flk NC_006905.1 2498005 2499006 D in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2498005..2499006 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217361.1 CDS yfcJ NC_006905.1 2499003 2500181 R IPR007114: Major facilitator superfamily; hypothetical protein complement(2499003..2500181) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217362.1 CDS SC2375 NC_006905.1 2500361 2500735 R hypothetical protein complement(2500361..2500735) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217363.1 CDS ner NC_006905.1 2500908 2501156 D putatiave helix-turn-helix regulatory protein 2500908..2501156 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217364.1 CDS SC2377 NC_006905.1 2501325 2501693 D hypothetical protein 2501325..2501693 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217365.1 CDS SC2378 NC_006905.1 2501693 2502211 D hypothetical protein 2501693..2502211 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217366.1 CDS yprA NC_006905.1 2502278 2502934 R inner membrane protein complement(2502278..2502934) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217367.1 CDS fabB NC_006905.1 2503032 2504246 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(2503032..2504246) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217368.2 CDS mnmC NC_006905.1 2504406 2506406 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2504406..2506406 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217369.1 CDS yfcL NC_006905.1 2506458 2506733 R hypothetical protein complement(2506458..2506733) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217370.1 CDS yfcM NC_006905.1 2506766 2507314 R hypothetical protein complement(2506766..2507314) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217371.1 CDS yfcA NC_006905.1 2507314 2508123 R hypothetical protein complement(2507314..2508123) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217372.1 CDS mepA NC_006905.1 2508123 2508947 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(2508123..2508947) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217373.1 CDS aroC NC_006905.1 2508951 2510036 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2508951..2510036) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217374.1 CDS yfcB NC_006905.1 2510072 2511004 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2510072..2511004) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217375.1 CDS yfcN NC_006905.1 2511224 2511721 D IPR002625: Smr protein/MutS2 C-terminal; hypothetical protein 2511224..2511721 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217376.1 CDS sixA NC_006905.1 2511821 2512306 R phosphohistidine phosphatase complement(2511821..2512306) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217377.1 CDS fadJ NC_006905.1 2512515 2514662 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(2512515..2514662) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217378.1 CDS fadI NC_006905.1 2514662 2515972 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(2514662..2515972) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217379.1 CDS yfcZ NC_006905.1 2516150 2516458 R IPR005272: Conserved hypothetical protein 743; hypothetical protein complement(2516150..2516458) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217380.1 CDS fadL NC_006905.1 2516799 2518112 D IPR005017: Membrane protein involved in aromatic hydrocarbon degradation; long-chain fatty acid outer membrane transporter 2516799..2518112 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217381.1 CDS vacJ NC_006905.1 2518173 2518928 R lipoprotein complement(2518173..2518928) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217382.1 CDS yfdC NC_006905.1 2519217 2520158 D hypothetical protein 2519217..2520158 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217383.1 CDS pgtE NC_006905.1 2520465 2521403 R outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease complement(2520465..2521403) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217384.1 CDS pgtA NC_006905.1 2521671 2522759 R IPR001789: Response regulator receiver; IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; phosphoglycerate transport activator complement(2521671..2522759) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217385.1 CDS pgtB NC_006905.1 2522908 2524914 R IPR003660: Histidine kinase, HAMP region; IPR005467: Histidine kinase; phosphoglycerate transporter complement(2522908..2524914) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217386.1 CDS pgtC NC_006905.1 2524911 2526221 R phosphoglycerate transporter complement(2524911..2526221) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217387.1 CDS pgtP NC_006905.1 2526540 2527931 D IPR000849: GlpT transporter; IPR007114: Major facilitator superfamily; phosphoglycerate transporter 2526540..2527931 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217388.1 CDS yfdY NC_006905.1 2528207 2528449 R hypothetical protein complement(2528207..2528449) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217389.1 CDS ddg NC_006905.1 2528971 2529888 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; lipid A biosynthesis palmitoleoyl acyltransferase 2528971..2529888 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217390.1 CDS yis2 NC_006905.1 2529889 2530572 R integrase complement(2529889..2530572) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217391.1 CDS SC2404 NC_006905.1 2530743 2531144 R hypothetical protein complement(2530743..2531144) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217392.1 CDS yfdZ NC_006905.1 2531730 2532968 R aminotransferase complement(2531730..2532968) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217393.1 CDS glk NC_006905.1 2533691 2534656 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase complement(2533691..2534656) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217394.1 CDS yfeO NC_006905.1 2534860 2536095 D IPR001807: Cl- channel, voltage gated; hypothetical protein 2534860..2536095 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217395.1 CDS dciP NC_006905.1 2536115 2537767 R IPR000399: Pyruvate decarboxylase; IPR000408: Regulator of chromosome condensation, RCC1; thiamine pyrophosphate enzyme complement(2536115..2537767) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217396.1 CDS yghZ NC_006905.1 2537947 2538945 D IPR001395: Aldo/keto reductase; IPR005399: KCNAB voltage-gated K+ channel, beta subunit; oxidoreductase 2537947..2538945 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217397.1 CDS ypeC NC_006905.1 2539059 2539385 D hypothetical protein 2539059..2539385 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217398.1 CDS mntH NC_006905.1 2539446 2540687 R IPR001046: Natural resistance-associated macrophage protein; manganese transport protein MntH complement(2539446..2540687) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217399.1 CDS nupC NC_006905.1 2541030 2542232 D IPR002668: Na+ dependent nucleoside transporter; NUP family nucleoside transport 2541030..2542232 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217400.1 CDS yfeA NC_006905.1 2542285 2544474 R IPR001633: EAL domain; diguanylate cyclase/phosphodiesterase domain-containing protein complement(2542285..2544474) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217401.1 CDS yfeC NC_006905.1 2545080 2545442 D negative regulator 2545080..2545442 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217402.1 CDS yfeD NC_006905.1 2545444 2545836 D negative regulator 2545444..2545836 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217403.1 CDS gltX NC_006905.1 2545890 2547305 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2545890..2547305) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217404.1 CDS xapR NC_006905.1 2547995 2548879 R IPR000847: Bacterial regulatory protein LysR, HTH motif; DNA-binding transcriptional activator XapR complement(2547995..2548879) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217405.1 CDS SC2418 NC_006905.1 2548931 2549089 R hypothetical protein complement(2548931..2549089) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217406.1 CDS xapB NC_006905.1 2549148 2550404 R IPR004740: Nucleoside:H+ symporter; IPR007114: Major facilitator superfamily; major facilitator superfamily xanthosine permease complement(2549148..2550404) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217407.1 CDS xapA NC_006905.1 2550459 2551292 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(2550459..2551292) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217408.1 CDS yfeN NC_006905.1 2551548 2552309 D hypothetical protein 2551548..2552309 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217409.1 CDS yfeR NC_006905.1 2552371 2553297 R IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator complement(2552371..2553297) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217410.1 CDS yfeH NC_006905.1 2553387 2554385 D hypothetical protein 2553387..2554385 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217411.1 CDS ypeB NC_006905.1 2554382 2554600 R hypothetical protein complement(2554382..2554600) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217412.1 CDS ligA NC_006905.1 2554602 2556617 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2554602..2556617) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217413.1 CDS zipA NC_006905.1 2556689 2557714 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(2556689..2557714) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217414.1 CDS cysZ NC_006905.1 2557908 2558669 D role in sulfur assimilation; sulfate transport protein CysZ 2557908..2558669 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217415.1 CDS cysK NC_006905.1 2558981 2559952 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2558981..2559952 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217416.1 CDS pthP NC_006905.1 2560336 2560593 D IPR000032: Phosphocarrier HPr protein; IPR001020: HPr histidine phosphorylation site; IPR002114: HPr serine phosphorylation site; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2560336..2560593 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217417.1 CDS ptsI NC_006905.1 2560642 2562369 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 2560642..2562369 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217418.1 CDS crr NC_006905.1 2562410 2562919 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2562410..2562919 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217419.1 CDS SC2432 NC_006905.1 2563069 2563308 R IPR002086: Aldehyde dehydrogenase; hypothetical protein complement(2563069..2563308) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217420.1 CDS pdxK NC_006905.1 2563305 2564171 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase complement(2563305..2564171) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217421.1 CDS ptsJ NC_006905.1 2564254 2565546 D IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 2564254..2565546 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217422.1 CDS yfeJ NC_006905.1 2565561 2566280 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2565561..2566280 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217423.1 CDS yfeK NC_006905.1 2566249 2566719 D hypothetical protein 2566249..2566719 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217424.1 CDS yfeL NC_006905.1 2566732 2567271 D membrane carboxypeptidase 2566732..2567271 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217425.1 CDS SC2438 NC_006905.1 2567177 2567383 R hypothetical protein complement(2567177..2567383) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217426.2 CDS cysM NC_006905.1 2567402 2568313 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(2567402..2568313) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217427.1 CDS cysA NC_006905.1 2568381 2569478 R IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; sulfate/thiosulfate transporter subunit complement(2568381..2569478) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217428.1 CDS cysW NC_006905.1 2569468 2570343 R Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit complement(2569468..2570343) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217429.1 CDS cysU NC_006905.1 2570343 2571176 R IPR000515: Binding-protein-dependent transport systems inner membrane component; sulfate/thiosulfate transporter subunit complement(2570343..2571176) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217430.1 CDS cysP NC_006905.1 2571176 2572192 R IPR000957: Prokaryotic sulfate-/thiosulfate-binding protein; IPR002052: N-6 Adenine-specific DNA methylase; thiosulfate transporter subunit complement(2571176..2572192) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217431.1 CDS ucpA NC_006905.1 2572350 2573141 R IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR002424: Insect alcohol dehydrogenase family;IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; short chain dehydrogenase complement(2572350..2573141) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217432.1 CDS yfeX NC_006905.1 2573389 2574288 R hypothetical protein complement(2573389..2574288) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217433.1 CDS yfeY NC_006905.1 2574383 2574958 R hypothetical protein complement(2574383..2574958) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217434.1 CDS yfeZ NC_006905.1 2575020 2575469 R hypothetical protein complement(2575020..2575469) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217435.2 CDS ypeA NC_006905.1 2575456 2575881 R acetyltransferase complement(2575456..2575881) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217436.1 CDS amiA NC_006905.1 2576094 2576963 D N-acetylmuramoyl-L-alanine amidase 2576094..2576963 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217437.1 CDS hemF NC_006905.1 2576966 2577865 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2576966..2577865 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217438.1 CDS ypfK NC_006905.1 2577886 2578215 D inner membrane protein 2577886..2578215 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217439.1 CDS SC2452 NC_006905.1 2578351 2578629 R hypothetical protein complement(2578351..2578629) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217440.1 CDS eutR NC_006905.1 2578663 2579715 R activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR complement(2578663..2579715) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217441.1 CDS eutL NC_006905.1 2580270 2580929 R carboxysome structural protein, ethanolamine utilization complement(2580270..2580929) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217442.1 CDS eutB NC_006905.1 2581853 2583214 R ethanolamine ammonia-lyase, heavy chain complement(2581853..2583214) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217443.1 CDS eutH NC_006905.1 2584626 2585852 R hypothetical protein complement(2584626..2585852) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217444.1 CDS eutG NC_006905.1 2585972 2587159 R IPR001670: Iron-containing alcohol dehydrogenase; transport protein in ethanolamine utilization complement(2585972..2587159) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217445.1 CDS eutJ NC_006905.1 2587149 2587988 R IPR001023: Heat shock protein Hsp70; heatshock protein (Hsp70) complement(2587149..2587988) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217446.1 CDS eutE NC_006905.1 2587999 2589402 R aldehyde oxidoreductase in ethanolamine utilization complement(2587999..2589402) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217447.1 CDS eutN NC_006905.1 2589414 2589701 R IPR004992: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; detox protein in ethanolamine utilization complement(2589414..2589701) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217448.1 CDS eutM NC_006905.1 2589814 2590104 R IPR000249: Bacterial microcompartments protein; detox protein in ethanolamine utilization complement(2589814..2590104) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217449.1 CDS eutD NC_006905.1 2590145 2591161 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(2590145..2591161) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217450.1 CDS eutT NC_006905.1 2591158 2591955 R cobalamin adenosyltransferase complement(2591158..2591955) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217451.1 CDS eutQ NC_006905.1 2591952 2592641 R ethanolamine utilization protein complement(2591952..2592641) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217452.1 CDS eutP NC_006905.1 2592619 2593107 R IPR001687: ATP/GTP-binding site motif A (P-loop); ethanolamine utilization protein complement(2592619..2593107) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217453.1 CDS eutS NC_006905.1 2593111 2593446 R carboxysome structural protein, ethanol utilization complement(2593111..2593446) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217454.1 CDS maeB NC_006905.1 2593863 2596142 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(2593863..2596142) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217455.1 CDS SC2468 NC_006905.1 2596144 2596344 D hypothetical protein 2596144..2596344 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217456.1 CDS talA NC_006905.1 2596414 2597364 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase A 2596414..2597364 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217457.1 CDS tktB NC_006905.1 2597384 2599384 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2597384..2599384 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217458.1 CDS SC2471 NC_006905.1 2599447 2599737 R IPR000345: Cytochrome c heme-binding site; hypothetical protein complement(2599447..2599737) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217459.1 CDS ypfG NC_006905.1 2599805 2600848 R hypothetical protein complement(2599805..2600848) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217460.1 CDS yffH NC_006905.1 2600973 2601548 R hypothetical protein complement(2600973..2601548) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217461.1 CDS yfeW NC_006905.1 2601752 2603050 D hypothetical protein 2601752..2603050 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217462.1 CDS aegA NC_006905.1 2603499 2605466 R unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); oxidoreductase Fe-S binding subunit complement(2603499..2605466) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217463.1 CDS acrD NC_006905.1 2607537 2610650 D IPR001036: Acriflavin resistance protein; aminoglycoside/multidrug efflux system 2607537..2610650 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217464.1 CDS yffB NC_006905.1 2611224 2611580 D hypothetical protein 2611224..2611580 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217465.1 CDS dapE NC_006905.1 2611584 2612711 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2611584..2612711 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217466.1 CDS SC2479 NC_006905.1 2612739 2612939 D hypothetical protein 2612739..2612939 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217467.1 CDS ypfI NC_006905.1 2612966 2614984 R hypothetical protein complement(2612966..2614984) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217468.1 CDS ypfJ NC_006905.1 2615000 2615863 R IPR006025: Neutral zinc metallopeptidases, zinc-binding site; hypothetical protein complement(2615000..2615863) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217469.1 CDS purC NC_006905.1 2615994 2616707 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(2615994..2616707) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217470.1 CDS nlpB NC_006905.1 2616882 2617916 R IPR001360: Glycoside hydrolase, family 1; lipoprotein complement(2616882..2617916) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217471.1 CDS dapA NC_006905.1 2617933 2618811 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2617933..2618811) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217472.2 CDS gcvR NC_006905.1 2618958 2619530 D negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2618958..2619530 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217473.1 CDS bcp NC_006905.1 2619530 2620000 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2619530..2620000 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217474.1 CDS grk NC_006905.1 2620047 2621186 R IPR004381: Conserved hypothetical protein 45; hypothetical protein complement(2620047..2621186) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217475.1 CDS SC2488 NC_006905.1 2621192 2622460 R permease complement(2621192..2622460) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217476.1 CDS cdaR NC_006905.1 2622528 2623709 R regulatory protein complement(2622528..2623709) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217477.1 CDS perM NC_006905.1 2623992 2625059 R PerM family permease complement(2623992..2625059) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217478.1 CDS yfgC NC_006905.1 2625267 2626730 D IPR001440: TPR repeat; hypothetical protein 2625267..2626730 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217479.1 CDS yfgD NC_006905.1 2626770 2627129 D arsenate reductase 2626770..2627129 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217480.1 CDS yfgE NC_006905.1 2627156 2627881 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor complement(2627156..2627881) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217481.1 CDS uraA NC_006905.1 2627952 2629241 R IPR006042: Xanthine/uracil permease family; uracil transporter complement(2627952..2629241) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217482.1 CDS upp NC_006905.1 2629329 2629955 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2629329..2629955) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217483.1 CDS purM NC_006905.1 2630368 2631405 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2630368..2631405 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217484.1 CDS purN NC_006905.1 2631405 2632043 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2631405..2632043 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217485.1 CDS ppk NC_006905.1 2632232 2634298 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2632232..2634298 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217486.1 CDS ppx NC_006905.1 2634375 2635844 D exopolyphosphatase 2634375..2635844 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217487.1 CDS yfgF NC_006905.1 2635880 2638093 R IPR001633: EAL domain; diguanylate cyclase complement(2635880..2638093) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217488.1 CDS SC2501 NC_006905.1 2638190 2638327 R hypothetical protein complement(2638190..2638327) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217489.1 CDS yfgG NC_006905.1 2638506 2638697 D inner membrane protein 2638506..2638697 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217490.1 CDS SC2503 NC_006905.1 2638850 2639113 R hypothetical protein complement(2638850..2639113) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217491.1 CDS SC2504 NC_006905.1 2639408 2639722 D IPR002453: Beta tubulin; hypothetical protein 2639408..2639722 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217492.1 CDS insF NC_006905.1 2639743 2640087 R IPR000345: Cytochrome c heme-binding site; IS3-like transposase complement(2639743..2640087) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217493.1 CDS SC2506 NC_006905.1 2640508 2642886 R hypothetical protein complement(2640508..2642886) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217494.1 CDS int NC_006905.1 2642981 2643241 R phage integrase family site specific recombinase complement(2642981..2643241) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217495.1 CDS guaA NC_006905.1 2643546 2645123 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2643546..2645123) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217496.1 CDS imdH NC_006905.1 2645193 2646845 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2645193..2646845) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217497.2 CDS xseA NC_006905.1 2646821 2648170 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2646821..2648170 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217498.1 CDS ratB NC_006905.1 2655082 2662389 R IPR008541: Salmonella Protein of unknown function DUF823; IPR008542: Salmonella Protein of unknown function DUF824; outer membrane protein complement(2655082..2662389) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217499.1 CDS ratA NC_006905.1 2662555 2668152 R outer membrane protein complement(2662555..2668152) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217500.1 CDS sinI NC_006905.1 2668272 2669231 R outer membrane protein complement(2668272..2669231) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217501.1 CDS sinH NC_006905.1 2669289 2671481 R IPR003535: Intimin bacterial adhesion mediator protein; intimin-like protein complement(2669289..2671481) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217502.1 CDS yfgJ NC_006905.1 2671827 2672048 R hypothetical protein complement(2671827..2672048) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217503.1 CDS engA NC_006905.1 2672137 2673609 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2672137..2673609) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217504.1 CDS yfgL NC_006905.1 2673728 2674906 R with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL complement(2673728..2674906) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217505.1 CDS yfgM NC_006905.1 2674917 2675537 R hypothetical protein complement(2674917..2675537) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217506.1 CDS hisS NC_006905.1 2675551 2676825 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(2675551..2676825) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217507.1 CDS ispG NC_006905.1 2676936 2678054 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2676936..2678054) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217508.1 CDS yfgA NC_006905.1 2678081 2679085 R cytoskeletal protein RodZ complement(2678081..2679085) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217509.1 CDS yfgB NC_006905.1 2679377 2680543 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(2679377..2680543) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217510.1 CDS ndk NC_006905.1 2680750 2681181 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2680750..2681181) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217511.1 CDS SC2524 NC_006905.1 2681302 2682165 R IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; polyferredoxin complement(2681302..2682165) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217512.1 CDS ynfH NC_006905.1 2682165 2682974 R dimethylsulfoxide reductase complement(2682165..2682974) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217513.1 CDS dmsB NC_006905.1 2682967 2683596 R IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; anaerobic dimethylsulfoxide reductase complement(2682967..2683596) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217514.1 CDS dmsA NC_006905.1 2683593 2685998 R IPR006655: Prokaryotic molybdopterin oxidoreductase; anaerobic dimethylsulfoxide reductase complement(2683593..2685998) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217515.1 CDS sseA NC_006905.1 2693586 2694428 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2693586..2694428 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217516.1 CDS SC2529 NC_006905.1 2694675 2695343 D hypothetical protein 2694675..2695343 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217517.1 CDS sseB NC_006905.1 2695912 2696697 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB complement(2695912..2696697) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217518.2 CDS pepB NC_006905.1 2696795 2698078 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase complement(2696795..2698078) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217519.1 CDS yfhJ NC_006905.1 2698256 2698456 R hypothetical protein complement(2698256..2698456) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217520.1 CDS fdx NC_006905.1 2698468 2698803 R IPR001055: Adrenodoxin; [2FE-2S] ferredoxin complement(2698468..2698803) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217521.1 CDS hscB NC_006905.1 2700667 2701182 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(2700667..2701182) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217522.1 CDS iscA NC_006905.1 2701378 2701701 R forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein complement(2701378..2701701) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217523.1 CDS nifU NC_006905.1 2701730 2702116 R scaffold protein complement(2701730..2702116) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217524.1 CDS nifS NC_006905.1 2702144 2703358 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(2702144..2703358) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217525.1 CDS yfhP NC_006905.1 2703539 2704033 R regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR complement(2703539..2704033) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217526.1 CDS yfhQ NC_006905.1 2704192 2704923 R rRNA methylase complement(2704192..2704923) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217527.1 CDS suhB NC_006905.1 2705042 2705845 D IPR000760: Inositol monophosphatase; inositol monophosphatase 2705042..2705845 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217528.1 CDS yfhR NC_006905.1 2705990 2706868 D IPR000379: Esterase/lipase/thioesterase; hydrolase 2705990..2706868 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217529.1 CDS asrA NC_006905.1 2707050 2708093 D IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; anaerobic sulfide reductase 2707050..2708093 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217530.1 CDS asrB NC_006905.1 2708097 2708915 D with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2708097..2708915 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217531.1 CDS asrC NC_006905.1 2708926 2709939 D IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; IPR006066: Nitrite and sulfite reductase iron-sulfur/siroheme-binding site; anaerobic sulfide reductase 2708926..2709939 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217532.1 CDS SC2545 NC_006905.1 2709940 2710926 R inner membrane protein complement(2709940..2710926) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217533.1 CDS SC2546 NC_006905.1 2710917 2711555 R hypothetical protein complement(2710917..2711555) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217534.1 CDS csiE NC_006905.1 2711681 2712958 D stationary phase inducible protein CsiE 2711681..2712958 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217535.1 CDS hcaT NC_006905.1 2712953 2714092 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter complement(2712953..2714092) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217536.1 CDS glyA NC_006905.1 2714288 2715541 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2714288..2715541) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217537.1 CDS SC2550 NC_006905.1 2715556 2715804 R hypothetical protein complement(2715556..2715804) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217538.1 CDS hmpA NC_006905.1 2715866 2717056 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2715866..2717056 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217539.1 CDS cadC NC_006905.1 2717238 2718782 D regulates the cadBA operon; DNA-binding transcriptional activator CadC 2717238..2718782 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217540.1 CDS cadB NC_006905.1 2719143 2720474 D antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2719143..2720474 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217541.1 CDS cadA NC_006905.1 2720557 2722701 D IPR000310: Orn/Lys/Arg decarboxylase, major region; IPR005308: Orn/Lys/Arg decarboxylase, N-terminal domain; IPR008286: Orn/Lys/Arg decarboxylase, C-terminal; lysine decarboxylase 1 2720557..2722701 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217542.1 CDS yjdL NC_006905.1 2722757 2724217 D IPR000109: TGF-beta receptor, type I/II extracellular region; IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR007114: Major facilitator superfamily; POT family di-/tripeptide transport protein 2722757..2724217 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217543.1 CDS glnB NC_006905.1 2724266 2724604 R indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 complement(2724266..2724604) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217544.1 CDS yfhA NC_006905.1 2724681 2726018 R IPR001789: Response regulator receiver; IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; transcriptional regulator of two-component regulator protein (EBP familiiy) complement(2724681..2726018) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217545.1 CDS yfhG NC_006905.1 2726015 2726845 R hypothetical protein complement(2726015..2726845) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217546.1 CDS yfhK NC_006905.1 2726781 2728223 R IPR003594: ATP-binding region, ATPase-like; IPR003660: Histidine kinase, HAMP region; IPR003661: Histidine kinase A, N-terminal;IPR004358: Bacterial sensor protein, C-terminal;IPR005467: Histidine kinase; sensory kinase in regulatory system complement(2726781..2728223) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217547.1 CDS purG NC_006905.1 2728716 2732603 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2728716..2732603) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217548.1 CDS SC2561 NC_006905.1 2732717 2732854 D hypothetical protein 2732717..2732854 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217549.1 CDS yfhD NC_006905.1 2732859 2734403 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 2732859..2734403 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217550.1 CDS yfhC NC_006905.1 2734454 2735005 R IPR002125: Cytidine/deoxycytidylate deaminase, zinc-binding region; tRNA-specific adenosine deaminase complement(2734454..2735005) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217551.1 CDS yfhB NC_006905.1 2735030 2735665 R hypothetical protein complement(2735030..2735665) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217552.1 CDS yfeV NC_006905.1 2735669 2737030 R IPR001996: Phosphotransferase system PTS, EIIB domain; phosphotransferase system IIB components complement(2735669..2737030) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217553.1 CDS murQ NC_006905.1 2737041 2737934 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(2737041..2737934) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217554.1 CDS yfhH NC_006905.1 2738050 2738898 D DNA-binding transcriptional regulator 2738050..2738898 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217555.1 CDS panE NC_006905.1 2738937 2739854 R catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase complement(2738937..2739854) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217556.1 CDS yhjX NC_006905.1 2739876 2741072 R IPR007114: Major facilitator superfamily; permease complement(2739876..2741072) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217557.1 CDS budR NC_006905.1 2741188 2742114 D IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 2741188..2742114 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217558.1 CDS yfhL NC_006905.1 2742152 2742412 D IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; ferredoxin 2742152..2742412 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217559.1 CDS acpS NC_006905.1 2742524 2742904 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(2742524..2742904) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217560.1 CDS pdxJ NC_006905.1 2742904 2743635 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2742904..2743635) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217561.1 CDS recO NC_006905.1 2743647 2744375 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2743647..2744375) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217562.1 CDS era NC_006905.1 2744387 2745292 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2744387..2745292) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217563.1 CDS rnc NC_006905.1 2745289 2746026 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(2745289..2746026) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217564.1 CDS lepB NC_006905.1 2746242 2747216 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I complement(2746242..2747216) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217565.1 CDS lepA NC_006905.1 2747233 2749032 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2747233..2749032) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217566.1 CDS gogB NC_006905.1 2749431 2750927 D hypothetical protein 2749431..2750927 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217567.1 CDS SC2580 NC_006905.1 2751154 2751330 D hypothetical protein 2751154..2751330 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217568.1 CDS tfa NC_006905.1 2751745 2752161 R similar to genes in P2-like phages; Fels-2 prophage Tfa complement(2751745..2752161) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217569.1 CDS pin NC_006905.1 2752168 2753580 R similar to invertase (pin) in phage E14; Fels-2 prophage Pin complement(2752168..2753580) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217571.1 CDS SC2584 NC_006905.1 2753580 2754260 R bacteriophage protein complement(2753580..2754260) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217572.1 CDS SC2585 NC_006905.1 2754257 2755456 R bacteriophage protein complement(2754257..2755456) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217573.1 CDS SC2586 NC_006905.1 2755457 2755810 R bacteriophage protein complement(2755457..2755810) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217574.1 CDS SC2587 NC_006905.1 2755946 2756701 R bacteriophage protein complement(2755946..2756701) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217575.1 CDS SC2588 NC_006905.1 2756765 2757550 R hypothetical protein complement(2756765..2757550) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217576.1 CDS SC2589 NC_006905.1 2757615 2758178 R bacteriophage protein complement(2757615..2758178) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217577.1 CDS SC2590 NC_006905.1 2758252 2758410 R hypothetical protein complement(2758252..2758410) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217578.1 CDS SC2591 NC_006905.1 2758511 2758888 D IPR005569: Arc-like DNA binding domain; regulatory protein 2758511..2758888 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217579.1 CDS SC2592 NC_006905.1 2758895 2759230 R hypothetical protein complement(2758895..2759230) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217580.1 CDS SC2593 NC_006905.1 2759227 2760258 R bacteriophage protein complement(2759227..2760258) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217581.1 CDS SC2594 NC_006905.1 2760261 2760563 R bacteriophage protein complement(2760261..2760563) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217582.1 CDS SC2595 NC_006905.1 2760567 2761217 R bacteriophage protein complement(2760567..2761217) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217583.1 CDS SC2596 NC_006905.1 2761217 2763169 R bacteriophage protein complement(2761217..2763169) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217584.1 CDS SC2597 NC_006905.1 2763347 2763799 R bacteriophage protein complement(2763347..2763799) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217585.1 CDS SC2598 NC_006905.1 2763803 2764246 R bacteriophage protein complement(2763803..2764246) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217586.1 CDS SC2599 NC_006905.1 2764259 2765404 R bacteriophage protein complement(2764259..2765404) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217587.1 CDS SC2600 NC_006905.1 2765408 2765971 R bacteriophage protein complement(2765408..2765971) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217588.1 CDS SC2601 NC_006905.1 2765946 2766335 R bacteriophage protein complement(2765946..2766335) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217589.1 CDS SC2602 NC_006905.1 2766322 2766876 R bacteriophage protein complement(2766322..2766876) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217590.1 CDS SC2603 NC_006905.1 2766873 2767280 R bacteriophage protein complement(2766873..2767280) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217591.1 CDS SC2604 NC_006905.1 2767246 2767614 R bacteriophage protein complement(2767246..2767614) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217592.1 CDS SC2605 NC_006905.1 2767656 2768597 R bacteriophage protein complement(2767656..2768597) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217593.1 CDS SC2606 NC_006905.1 2768609 2769106 R bacteriophage protein complement(2768609..2769106) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217594.1 CDS SC2607 NC_006905.1 2769111 2770343 R hypothetical protein complement(2769111..2770343) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217595.1 CDS SC2608 NC_006905.1 2770358 2770966 R bacteriophage protein complement(2770358..2770966) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217596.1 CDS SC2609 NC_006905.1 2770980 2772449 R hypothetical protein complement(2770980..2772449) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217597.1 CDS SC2610 NC_006905.1 2772449 2774071 R hypothetical protein complement(2772449..2774071) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217598.1 CDS SC2611 NC_006905.1 2774074 2774652 R hypothetical protein complement(2774074..2774652) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217599.1 CDS SC2612 NC_006905.1 2774766 2775290 R hypothetical protein complement(2774766..2775290) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217600.1 CDS enpP NC_006905.1 2775508 2775957 R hypothetical protein complement(2775508..2775957) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217601.1 CDS lycV NC_006905.1 2775975 2776427 R IPR002196: Glycoside hydrolase, family 24; Gifsy-2 prophage lysozyme complement(2775975..2776427) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217602.1 CDS SC2615 NC_006905.1 2776411 2776746 R Gifsy-1 prophage protein complement(2776411..2776746) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217603.1 CDS gtgA NC_006905.1 2777016 2777702 D IPR006025: Neutral zinc metallopeptidases, zinc-binding site; hypothetical protein 2777016..2777702 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217604.1 CDS SC2617 NC_006905.1 2778063 2778512 D Gifsy-2 prophage protein 2778063..2778512 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217605.1 CDS SC2618 NC_006905.1 2778648 2778773 R Gifsy-2 prophage protein complement(2778648..2778773) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217606.1 CDS req NC_006905.1 2779172 2779969 R IPR000345: Cytochrome c heme-binding site; IPR003222: Antitermination protein; Gifsy-2 prophage molecular chaperone complement(2779172..2779969) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217607.1 CDS ninG NC_006905.1 2780102 2780713 R Gifsy-1 prophage NinG complement(2780102..2780713) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217608.1 CDS SC2621 NC_006905.1 2780716 2780916 R hypothetical protein complement(2780716..2780916) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217609.1 CDS SC2622 NC_006905.1 2780922 2781524 R Gifsy-2 prophage protein complement(2780922..2781524) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217610.1 CDS SC2623 NC_006905.1 2781559 2781807 R bacteriophage protein complement(2781559..2781807) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217611.1 CDS dinI NC_006905.1 2781924 2782157 R Gifsy-1 prophage DinI complement(2781924..2782157) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217612.1 CDS SC2625 NC_006905.1 2782312 2782578 R bacteriophage protein complement(2782312..2782578) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217613.1 CDS SC2626 NC_006905.1 2782672 2782953 R hypothetical protein complement(2782672..2782953) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217614.1 CDS SC2627 NC_006905.1 2782964 2783221 R hypothetical protein complement(2782964..2783221) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217615.1 CDS ead NC_006905.1 2783224 2783487 R Ead protein complement(2783224..2783487) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217616.1 CDS SC2629 NC_006905.1 2783575 2783838 R hypothetical protein complement(2783575..2783838) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217617.1 CDS SC2630 NC_006905.1 2783835 2784182 R DNA-binding protein complement(2783835..2784182) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217618.1 CDS dnaC NC_006905.1 2784193 2784942 R acts to load the DnaB helicase onto the intiation site durning DNA replication; replication protein complement(2784193..2784942) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217619.1 CDS prpO NC_006905.1 2784945 2785928 R similar to replication protein 15; IPR006497: Phage replication protein O, N-terminal; Gifsy-1 prophage PrpO complement(2784945..2785928) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217620.1 CDS SC2633 NC_006905.1 2786013 2786444 R similar to cI protein in phage N; Gifsy-1 prophage cI protein complement(2786013..2786444) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217621.1 CDS SC2634 NC_006905.1 2786704 2787123 D IPR001387: Helix-turn-helix motif; DNA-binding protein 2786704..2787123 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217622.1 CDS SC2635 NC_006905.1 2787413 2787529 D Gifsy-1 prophage protein 2787413..2787529 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217623.1 CDS SC2636 NC_006905.1 2787522 2787680 D Gifsy-1 prophage protein 2787522..2787680 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217624.1 CDS SC2637 NC_006905.1 2787702 2788052 D Gifsy-1 prophage protein 2787702..2788052 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217625.1 CDS recE NC_006905.1 2788179 2791106 D similar to exodeoxyribonuclease VIII; Gifsy-1 prophage RecE 2788179..2791106 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217626.1 CDS SC2639 NC_006905.1 2791117 2792226 D Gifsy-2 prophage protein 2791117..2792226 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217627.1 CDS SC2640 NC_006905.1 2792269 2792508 D hypothetical protein 2792269..2792508 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217628.1 CDS int NC_006905.1 2792811 2793713 R similar to integrase in phage; Gifsy-1 prophage Int complement(2792811..2793713) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217629.1 CDS rseC NC_006905.1 2794538 2795017 R involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC complement(2794538..2795017) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217630.1 CDS rseB NC_006905.1 2795014 2795970 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(2795014..2795970) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217631.1 CDS rseA NC_006905.1 2795970 2796686 R anti-RNA polymerase sigma factor SigE complement(2795970..2796686) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217632.1 CDS rpoE NC_006905.1 2796652 2797227 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(2796652..2797227) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217633.1 CDS nadB NC_006905.1 2797652 2799274 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2797652..2799274 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217634.1 CDS yfiC NC_006905.1 2799205 2800068 R IPR000051: SAM (and some other nucleotide) binding motif; IPR002052: N-6 Adenine-specific DNA methylase; hypothetical protein complement(2799205..2800068) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217635.1 CDS srmB NC_006905.1 2800126 2801460 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2800126..2801460 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217636.1 CDS yfiE NC_006905.1 2801478 2802422 R IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator complement(2801478..2802422) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217637.1 CDS yfiK NC_006905.1 2802480 2803067 D IPR001123: Lysine exporter protein (LYSE/YGGA); neutral amino-acid efflux protein 2802480..2803067 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217638.1 CDS yfiD NC_006905.1 2803129 2803512 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(2803129..2803512) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217639.1 CDS ung NC_006905.1 2803831 2804520 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2803831..2804520 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217640.1 CDS yfiF NC_006905.1 2804636 2805673 R IPR001537: tRNA/rRNA methyltransferase (SpoU); methyltransferase complement(2804636..2805673) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217641.1 CDS trxC NC_006905.1 2805877 2806296 D IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; thioredoxin 2805877..2806296 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217642.1 CDS yfiP NC_006905.1 2806369 2807049 D hypothetical protein 2806369..2807049 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217643.1 CDS yfiQ NC_006905.1 2807103 2809763 D acetyl-CoA synthetase 2807103..2809763 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217644.1 CDS pssA NC_006905.1 2809875 2811233 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2809875..2811233 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217645.1 CDS yfiM NC_006905.1 2811278 2811601 D hypothetical protein 2811278..2811601 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217646.1 CDS kgtP NC_006905.1 2811598 2812899 R IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; alpha-ketoglutarate transporter complement(2811598..2812899) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217647.1 CDS SC2660 NC_006905.1 2813003 2813458 R hypothetical protein complement(2813003..2813458) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217650.1 CDS clpB NC_006905.1 2819353 2821926 R IPR001270: Chaperonin clpA/B; protein disaggregation chaperone complement(2819353..2821926) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217651.1 CDS yfiH NC_006905.1 2822056 2822787 R hypothetical protein complement(2822056..2822787) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217652.1 CDS rluD NC_006905.1 2822784 2823764 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D complement(2822784..2823764) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217653.1 CDS yfiO NC_006905.1 2823896 2824633 D with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 2823896..2824633 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217654.1 CDS SC2667 NC_006905.1 2824608 2824763 D hypothetical protein 2824608..2824763 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217655.1 CDS yfiA NC_006905.1 2824905 2825243 D associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2824905..2825243 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217656.1 CDS pheA NC_006905.1 2825494 2826654 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2825494..2826654 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217657.1 CDS yvrE NC_006905.1 2826615 2827523 R hypothetical protein complement(2826615..2827523) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217658.1 CDS tyrA NC_006905.1 2827581 2828702 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(2827581..2828702) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217659.1 CDS aroF NC_006905.1 2828712 2829782 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2828712..2829782) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217660.1 CDS yfiR NC_006905.1 2830222 2830740 D hypothetical protein 2830222..2830740 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217661.1 CDS rplS NC_006905.1 2832110 2832457 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2832110..2832457) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217662.1 CDS trmD NC_006905.1 2832498 2833265 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2832498..2833265) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217663.2 CDS rimM NC_006905.1 2833310 2833858 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(2833310..2833858) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217664.2 CDS rpsP NC_006905.1 2833877 2834125 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2833877..2834125) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217665.1 CDS ffh NC_006905.1 2834378 2835739 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(2834378..2835739) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217666.1 CDS corE NC_006905.1 2835765 2836697 D cytochrome c-type biogenesis heme exporter protein C 2835765..2836697 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217667.2 CDS yfjD NC_006905.1 2836807 2838003 D IPR000644: CBS domain; hypothetical protein 2836807..2838003 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217668.1 CDS SC2681 NC_006905.1 2838124 2838729 D hypothetical protein 2838124..2838729 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217670.2 CDS grpE NC_006905.1 2838764 2839354 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2838764..2839354) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217669.2 CDS ppnK NC_006905.1 2839478 2840356 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2839478..2840356 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217671.1 CDS recN NC_006905.1 2840442 2842103 D IPR003439: ABC transporter; recombination and repair protein 2840442..2842103 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217672.1 CDS smpA NC_006905.1 2842252 2842590 D IPR001993: Mitochondrial substrate carrier; IPR002048: Calcium-binding EF-hand; IPR007450: SmpA/OmlA; hypothetical protein 2842252..2842590 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217673.1 CDS yfjF NC_006905.1 2842756 2843046 R hypothetical protein complement(2842756..2843046) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217674.1 CDS yfjG NC_006905.1 2843036 2843512 R IPR004827: Basic-leucine zipper (bZIP) transcription factor; IPR005340: Protein of unknown function UPF0083; hypothetical protein complement(2843036..2843512) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217675.1 CDS smpB NC_006905.1 2843616 2844143 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2843616..2844143 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217679.1 CDS SC2692 NC_006905.1 2855368 2856228 D hypothetical protein 2855368..2856228 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217680.1 CDS SC2693 NC_006905.1 2856293 2857702 D IPR003423: Outer membrane efflux protein; outer membrane efflux protein 2856293..2857702 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217681.1 CDS rtxI NC_006905.1 2857699 2859879 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter 2857699..2859879 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217682.1 CDS cyaD NC_006905.1 2859860 2861050 D IPR001064: Beta and gamma crystallin; IPR003997: Gram-negative bacterial RTX secretion protein D; IPR006144: HlyD secretion protein, C-terminal; HlyD family secretion protein 2859860..2861050 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217683.1 CDS SC2696 NC_006905.1 2861269 2861583 R hypothetical protein complement(2861269..2861583) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217684.1 CDS insN NC_006905.1 2861671 2862009 D IPR002197: Helix-turn-helix, Fis-type; IPR002514: Transposase, IS3/IS911family; transposase insN 2861671..2862009 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217685.1 CDS insM NC_006905.1 2862036 2862875 D IPR001584: Integrase, catalytic domain; hypothetical protein 2862036..2862875 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217686.1 CDS SC2699 NC_006905.1 2863501 2864460 D IPR000123: RNA-directed DNA polymerase (Reverse transcriptase), msDNA; reverse transcriptase-like protein 2863501..2864460 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217687.1 CDS SC2700 NC_006905.1 2864363 2865349 D hypothetical protein 2864363..2865349 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217688.1 CDS fljA NC_006905.1 2865967 2866506 R IPR003223: Flagellin phase1 repressor; flagellar synthesis: repressor of fliC complement(2865967..2866506) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217689.1 CDS hin NC_006905.1 2869796 2870368 R H inversion: regulation of flagellar gene expression by site-specific inversion of DNA; IPR006118: Site-specific recombinase; site-specific recombinase complement(2869796..2870368) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217690.1 CDS SC2703 NC_006905.1 2870772 2870954 D hypothetical protein 2870772..2870954 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217691.1 CDS iroB NC_006905.1 2871059 2872174 D IPR001993: Mitochondrial substrate carrier; glycosyl transferase family protein 2871059..2872174 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217692.1 CDS iroC NC_006905.1 2872255 2875911 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter 2872255..2875911 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217693.1 CDS iroD NC_006905.1 2876021 2877265 D enterochelin esterase 2876021..2877265 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217694.1 CDS IroE NC_006905.1 2877297 2878232 D hypothetical protein 2877297..2878232 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217695.2 CDS iroN NC_006905.1 2878274 2880448 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(2878274..2880448) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217696.1 CDS SC2709 NC_006905.1 2880979 2881290 R inner membrane protein complement(2880979..2881290) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217697.1 CDS pipB NC_006905.1 2881486 2882538 R pentapeptide repeat-containing protein complement(2881486..2882538) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217698.1 CDS SC2711 NC_006905.1 2882610 2882948 D hypothetical protein 2882610..2882948 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217699.1 CDS virK NC_006905.1 2883057 2883986 D virulence protein VirK 2883057..2883986 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217700.1 CDS mig NC_006905.1 2884378 2885175 D transcription activator 2884378..2885175 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217701.1 CDS nxiA NC_006905.1 2885896 2886909 R nickel transporter complement(2885896..2886909) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217702.1 CDS tctE NC_006905.1 2887042 2888508 R IPR001064: Beta and gamma crystallin; IPR003594: ATP-binding region, ATPase-like; IPR003660: Histidine kinase, HAMP region;IPR003661: Histidine kinase A, N-terminal;IPR004358: Bacterial sensor protein, C-terminal;IPR005467: Histidine kinase; tricarboxylic transport: regulatory protein complement(2887042..2888508) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217703.1 CDS tctD NC_006905.1 2888444 2889118 R IPR001789: Response regulator receiver; IPR001867: Transcriptional regulatory protein, C terminal; IPR005829: Sugar transporter superfamily; tricarboxylic transport: regulatory protein complement(2888444..2889118) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217704.1 CDS SC2717 NC_006905.1 2889157 2889276 D hypothetical protein 2889157..2889276 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217705.1 CDS tctC NC_006905.1 2889273 2890250 D IPR005064: Uncharacterized protein family UPF0065; tricarboxylic transport 2889273..2890250 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217706.1 CDS tctB NC_006905.1 2890262 2890696 D hypothetical protein 2890262..2890696 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217707.1 CDS tctA NC_006905.1 2890707 2892221 D IPR002823: Protein of unknown function DUF112; hypothetical protein 2890707..2892221 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217708.2 CDS ygaT NC_006905.1 2892524 2893501 D in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 2892524..2893501 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217709.1 CDS ygaF NC_006905.1 2893527 2894795 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2893527..2894795 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217710.1 CDS gabD NC_006905.1 2894817 2896265 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2894817..2896265 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217711.1 CDS gabT NC_006905.1 2896280 2897563 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2896280..2897563 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217712.1 CDS gabP NC_006905.1 2897693 2899093 D IPR002293: Amino acid/polyamine transporter family I; IPR004840: Amino acid permease; IPR004841: Amino acid permease-associated region; gamma-aminobutyrate transporter 2897693..2899093 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217713.1 CDS ygaE NC_006905.1 2899135 2899812 D regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2899135..2899812 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217714.1 CDS ygaU NC_006905.1 2899834 2900283 R IPR002482: Peptidoglycan-binding LysM; IPR007055: Transport-associated domain; LysM domain/BON superfamily protein complement(2899834..2900283) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217715.1 CDS yqaE NC_006905.1 2900383 2900541 R IPR000612: Protein of unknown function UPF0057; YqaE family transport protein complement(2900383..2900541) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217716.1 CDS ygaV NC_006905.1 2900724 2901023 D IPR000485: Bacterial regulatory proteins, AsnC/Lrp; IPR001845: Bacterial regulatory protein, ArsR family; ArsR family transcriptional regulator 2900724..2901023 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217717.1 CDS ygaP NC_006905.1 2901033 2901560 D IPR000010: Cysteine protease inhibitor; IPR001763: Rhodanese-like; hypothetical protein 2901033..2901560 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217718.1 CDS SC2731 NC_006905.1 2901639 2901818 D hypothetical protein 2901639..2901818 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217719.1 CDS stpA NC_006905.1 2901908 2902309 R IPR001801: Histone-like nucleoid-structuring protein H-NS; DNA binding protein complement(2901908..2902309) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217720.1 CDS ygaW NC_006905.1 2903008 2903457 D hypothetical protein 2903008..2903457 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217721.1 CDS ygaC NC_006905.1 2903492 2903842 R hypothetical protein complement(2903492..2903842) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217722.1 CDS ygaM NC_006905.1 2904004 2904330 D hypothetical protein 2904004..2904330 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217723.1 CDS mocR NC_006905.1 2904414 2905748 R IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator complement(2904414..2905748) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217724.1 CDS ynjA NC_006905.1 2905837 2906268 D IPR003779: Carboxymuconolactone decarboxylase; IPR004675: Alkylhydroperoxidase AhpD core domain; hypothetical protein 2905837..2906268 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217725.1 CDS SC2738 NC_006905.1 2906265 2906441 D hypothetical protein 2906265..2906441 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217726.1 CDS nrdH NC_006905.1 2906525 2906785 D IPR000345: Cytochrome c heme-binding site; glutaredoxin-like protein 2906525..2906785 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217727.1 CDS nrdI NC_006905.1 2906782 2907192 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2906782..2907192 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217728.1 CDS nrdE NC_006905.1 2907165 2909309 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2907165..2909309 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217729.1 CDS nrdF NC_006905.1 2909320 2910279 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2909320..2910279 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217730.1 CDS proV NC_006905.1 2910635 2911837 D with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2910635..2911837 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217731.1 CDS proW NC_006905.1 2911830 2912894 D with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2911830..2912894 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217732.1 CDS proX NC_006905.1 2912964 2913959 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2912964..2913959 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217733.1 CDS ygaY NC_006905.1 2914124 2915308 D IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; inner membrane protein 2914124..2915308 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217734.1 CDS emrR NC_006905.1 2915805 2916335 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2915805..2916335 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217735.1 CDS emrA NC_006905.1 2916435 2917634 D IPR005694: Efflux pump membrane protein Emr; IPR006143: Secretion protein HlyD; multidrug resistance secretion protein 2916435..2917634 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217736.1 CDS emrB NC_006905.1 2917651 2919189 D IPR004638: Drug resistance transporter EmrB/QacA subfamily; IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; MFS superfamily, multidrug transport protein 2917651..2919189 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217737.1 CDS SC2750 NC_006905.1 2919238 2920608 R glycoporin complement(2919238..2920608) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217738.1 CDS SC2751 NC_006905.1 2920753 2920896 D hypothetical protein 2920753..2920896 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217739.1 CDS luxS NC_006905.1 2920954 2921469 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(2920954..2921469) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217740.1 CDS gshA NC_006905.1 2921619 2923175 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(2921619..2923175) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217741.1 CDS yqaA NC_006905.1 2923252 2923677 R inner membrane protein complement(2923252..2923677) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217742.1 CDS yqaB NC_006905.1 2923674 2924240 R YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase complement(2923674..2924240) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217746.1 CDS csrA NC_006905.1 2925362 2925547 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(2925362..2925547) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217747.1 CDS alaS NC_006905.1 2925783 2928413 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2925783..2928413) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217748.1 CDS recX NC_006905.1 2928649 2929149 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2928649..2929149) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217749.1 CDS recA NC_006905.1 2929266 2930327 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2929266..2930327) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217750.1 CDS ygaD NC_006905.1 2930412 2930909 R IPR008136: CinA, C-terminal; competence damage-inducible protein A complement(2930412..2930909) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217751.1 CDS mltB NC_006905.1 2931388 2932515 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B complement(2931388..2932515) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217752.1 CDS srlA NC_006905.1 2932721 2933284 D IPR004699: PTS system enzyme II sorbitol-specific factor; PTS family, glucitol/sorbitol-specific enzyme IIC component,one of two IIC components 2932721..2933284 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217753.1 CDS srlE NC_006905.1 2933281 2934252 D IPR000719: Protein kinase; IPR004702: Sorbitol phosphotransferase enzyme II; PTS family, glucitol/sorbitol-specific IIB component, one of two IIC components 2933281..2934252 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217754.1 CDS slrB NC_006905.1 2934264 2934626 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 2934264..2934626 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217755.1 CDS srlD NC_006905.1 2934638 2935417 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 2934638..2935417 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217756.1 CDS gutM NC_006905.1 2935493 2935852 D regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2935493..2935852 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217757.1 CDS srlR NC_006905.1 2936050 2936823 D regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2936050..2936823 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217758.1 CDS gutQ NC_006905.1 2936816 2937781 D catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 2936816..2937781 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217759.1 CDS ygaA NC_006905.1 2937786 2939300 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(2937786..2939300) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217760.1 CDS norV NC_006905.1 2939486 2940925 D detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2939486..2940925 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217761.1 CDS ygbD NC_006905.1 2940922 2942055 D catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2940922..2942055 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217762.1 CDS hypF NC_006905.1 2942152 2944392 R IPR001792: Acylphosphatase; IPR004421: Hydrogenase maturation protein HypF; IPR006070: SUA5/yciO/yrdC, N-terminal;IPR006071: SUA5/yciO/yrdC; hydrogenase maturation protein complement(2942152..2944392) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217763.1 CDS hydN NC_006905.1 2944538 2945083 R involved in electron transport from formate to hydrogen; electron transport protein HydN complement(2944538..2945083) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217764.1 CDS SC2777 NC_006905.1 2945284 2946093 R hypothetical protein complement(2945284..2946093) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217765.1 CDS hycI NC_006905.1 2946120 2946590 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease complement(2946120..2946590) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217766.1 CDS hycH NC_006905.1 2946583 2946993 R HycE processing protein complement(2946583..2946993) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217767.1 CDS hycG NC_006905.1 2946990 2947757 R IPR006137: NADH ubiquinone oxidoreductase domain, 20 kDa subunit; IPR006138: NADH dehydrogenase (ubiquinone), 20 kDa subunit; hydrogenase activity complement(2946990..2947757) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217768.1 CDS hycF NC_006905.1 2947757 2948299 R electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit complement(2947757..2948299) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217769.1 CDS hycE NC_006905.1 2948309 2950018 R IPR001135: NADH-ubiquinone oxidoreductase, chain 49kDa; IPR001268: NADH dehydrogenase (ubiquinone), 30 kDa subunit; formate hydrogenlyase subunit 5 complement(2948309..2950018) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217770.1 CDS hycD NC_006905.1 2950036 2950959 R IPR001694: Respiratory-chain NADH dehydrogenase, subunit 1; hydrogenase 3, membrane subunit (part of FHL complex) complement(2950036..2950959) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217771.1 CDS hycC NC_006905.1 2950971 2952788 R catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); formate hydrogenlyase subunit 3 complement(2950971..2952788) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217772.1 CDS hycB NC_006905.1 2952788 2953396 R IPR000345: Cytochrome c heme-binding site; IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; hydrogenase-3, iron-sulfur subunit (part of FHL complex) complement(2952788..2953396) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217773.1 CDS hycA NC_006905.1 2953542 2954003 R regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA complement(2953542..2954003) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217774.1 CDS hypA NC_006905.1 2954213 2954569 D plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 2954213..2954569 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217775.1 CDS hypB NC_006905.1 2954638 2955510 D GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 2954638..2955510 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217776.1 CDS hypC NC_006905.1 2955501 2955773 D HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase assembly chaperone 2955501..2955773 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217777.1 CDS hypD NC_006905.1 2955773 2956894 D IPR002780: Hydrogenase formation HypD protein; hydrogenase expression/formation protein 2955773..2956894 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217778.1 CDS hypE NC_006905.1 2956891 2957901 D IPR000728: AIR synthase related protein; hydrogenase expression/formation protein 2956891..2957901 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217779.1 CDS fhlA NC_006905.1 2958009 2960198 D IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; IPR003018: GAF domain;IPR003593: AAA ATPase; formate hydrogen-lyase transcriptional activator 2958009..2960198 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217780.1 CDS ygbA NC_006905.1 2960260 2960604 R hypothetical protein complement(2960260..2960604) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217781.1 CDS sitA NC_006905.1 2960786 2961703 D IPR006127: Periplasmic solute binding protein; IPR006128: Adhesion lipoprotein; IPR006129: Adhesin B; iron transporter: fur regulated 2960786..2961703 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217782.1 CDS sitB NC_006905.1 2961700 2962521 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; iron transporter: fur regulated 2961700..2962521 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217783.1 CDS sitC NC_006905.1 2962518 2963378 D IPR001626: ABC transporter family 3; iron transporter: fur regulated 2962518..2963378 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217784.1 CDS sitD NC_006905.1 2963369 2964217 D IPR001626: ABC transporter family 3; iron transporter: fur regulated 2963369..2964217 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217785.1 CDS sprB NC_006905.1 2964494 2965249 R IPR000792: Bacterial regulatory protein, LuxR family; transcriptional regulator complement(2964494..2965249) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217786.1 CDS hilC NC_006905.1 2965634 2966521 R IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator complement(2965634..2966521) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217787.1 CDS SC2800 NC_006905.1 2966866 2967318 R hypothetical protein complement(2966866..2967318) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217788.1 CDS orgB NC_006905.1 2967315 2967995 R flagellar biosynthesis/type III secretory pathway protein complement(2967315..2967995) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217789.1 CDS orgA NC_006905.1 2967952 2968530 R inner membrane protein complement(2967952..2968530) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217790.1 CDS prgK NC_006905.1 2968523 2969281 R IPR003282: Type III secretion system outer membrane K protein; IPR006182: Secretory protein YscJ/FliF; cell invasion protein complement(2968523..2969281) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217791.1 CDS prgJ NC_006905.1 2969278 2969583 R cell invasion protein complement(2969278..2969583) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217792.1 CDS prgI NC_006905.1 2969602 2969844 R cell invasion protein complement(2969602..2969844) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217793.1 CDS prgH NC_006905.1 2969869 2971104 R cell invasion protein complement(2969869..2971104) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217794.1 CDS hilD NC_006905.1 2971363 2972292 D IPR000005: Helix-turn-helix, AraC type; regulatory protein 2971363..2972292 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217795.1 CDS hilA NC_006905.1 2973384 2975045 D Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 2973384..2975045 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217796.1 CDS iagB NC_006905.1 2975063 2975545 D IPR008258: SLT domain; cell invasion protein 2975063..2975545 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217797.1 CDS sptP NC_006905.1 2975599 2977230 R IPR000242: Tyrosine specific protein phosphatase; IPR000387: Tyrosine specific protein phosphatase and dual specificity protein phosphatase; IPR003537: Yersinia virulence determinant YopE;IPR003546: Salmonella/Yersinia modular tyrosine phosphatase;IPR003595: Protein tyrosine phosphatase, catalytic region; protein tyrosine phosphate complement(2975599..2977230) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217798.1 CDS sicP NC_006905.1 2977217 2977567 R virulence associated chaperone complement(2977217..2977567) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217799.1 CDS SC2812 NC_006905.1 2977636 2977896 R hypothetical protein complement(2977636..2977896) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217800.1 CDS iacp NC_006905.1 2977940 2978188 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2977940..2978188) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217801.1 CDS sipA NC_006905.1 2978207 2980264 R cell invasion protein complement(2978207..2980264) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217802.1 CDS sipD NC_006905.1 2980283 2981314 R cell invasion protein complement(2980283..2981314) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217803.1 CDS sipC NC_006905.1 2981385 2982614 R IPR005427: Salmonella/Shigella invasin protein C; cell invasion protein complement(2981385..2982614) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217804.1 CDS sipB NC_006905.1 2982642 2984423 R IPR003895: Salmonella/Shigella invasin protein B; cell invasion protein complement(2982642..2984423) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217805.1 CDS sicA NC_006905.1 2984426 2984923 R IPR005415: Gram-negative bacterial type III secretion SycD chaperone; surface presentation of antigens; secretory proteins complement(2984426..2984923) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217806.1 CDS spaS NC_006905.1 2985061 2986131 R Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS complement(2985061..2986131) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217807.1 CDS spaR NC_006905.1 2986118 2986909 R IPR002010: Bacterial export protein, family 1; IPR006304: Type III secretion protein SpaR/YscT; surface presentation of antigens; secretory proteins complement(2986118..2986909) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217808.1 CDS spaQ NC_006905.1 2986913 2987173 R IPR000595: Cyclic nucleotide-binding domain; IPR002191: Bacterial export protein FliQ, family 3; IPR006306: Type III secretion protein HrpO; surface presentation of antigens; secretory proteins complement(2986913..2987173) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217809.1 CDS spaP NC_006905.1 2987199 2987873 R part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP complement(2987199..2987873) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217810.1 CDS spaO NC_006905.1 2987863 2988774 R involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO complement(2987863..2988774) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217811.1 CDS invJ NC_006905.1 2988774 2989784 R IPR003066: Salmonella invasion protein InvJ; surface presentation of antigens; secretory proteins complement(2988774..2989784) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217812.1 CDS invI NC_006905.1 2989784 2990227 R IPR002954: Salmonella surface presentation of antigen M protein; surface presentation of antigens; secretory proteins complement(2989784..2990227) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217813.1 CDS invC NC_006905.1 2990205 2991500 R Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL complement(2990205..2991500) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217814.1 CDS invB NC_006905.1 2991497 2991904 R IPR003065: Invasion protein, B family; surface presentation of antigens; secretory proteins complement(2991497..2991904) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217815.1 CDS invA NC_006905.1 2991928 2993985 R IPR001712: Bacterial type III secretion FHIPEP; IPR006302: Type III secretion protein HrcV; invasion protein complement(2991928..2993985) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217816.1 CDS invE NC_006905.1 2994010 2995128 R IPR003520: Salmonella/Shigella invasion protein E; invasion protein complement(2994010..2995128) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217817.1 CDS invG NC_006905.1 2995125 2996813 R IPR001775: Bacterial general secretion pathway protein D; IPR003522: Type III secretion system outer membrane G protein; IPR004845: Bacterial type II secretion system protein D;IPR004846: Bacterial type II and III secretion system protein;IPR005644: NolW-like; invasion protein; outer membrane complement(2995125..2996813) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217818.1 CDS invF NC_006905.1 2996810 2997571 R IPR000005: Helix-turn-helix, AraC type; invasion protein complement(2996810..2997571) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217819.1 CDS invH NC_006905.1 2997916 2998359 D IPR006830: InvH outer membrane lipoprotein; invasion protein 2997916..2998359 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217820.1 CDS SC2833 NC_006905.1 2999241 2999522 D ABC-type transport system 2999241..2999522 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217821.1 CDS SC2834 NC_006905.1 2999519 3000046 D IPR000182: GCN5-related N-acetyltransferase; acetyltransferase 2999519..3000046 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217822.1 CDS SC2835 NC_006905.1 3000119 3000295 R hypothetical protein complement(3000119..3000295) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217823.1 CDS pphB NC_006905.1 3000672 3001328 D IPR004843: Metallo-phosphoesterase; IPR006186: Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; serine/threonine-specific protein phosphatase 2 3000672..3001328 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217824.1 CDS SC2837 NC_006905.1 3001573 3002067 R hypothetical protein complement(3001573..3002067) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217825.1 CDS SC2838 NC_006905.1 3002094 3002762 R hypothetical protein complement(3002094..3002762) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217826.1 CDS tnpA NC_006905.1 3003185 3003322 R hypothetical protein complement(3003185..3003322) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217827.1 CDS SC2840 NC_006905.1 3003337 3003747 R hypothetical protein complement(3003337..3003747) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217828.1 CDS mutS NC_006905.1 3003905 3006472 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3003905..3006472 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217829.1 CDS SC2842 NC_006905.1 3006528 3006908 R hypothetical protein complement(3006528..3006908) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217830.1 CDS SC2843 NC_006905.1 3009168 3010664 R IPR003474: Gluconate transporter; permease complement(3009168..3010664) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217831.1 CDS SC2844 NC_006905.1 3010661 3011611 R nucleoside-diphosphate-sugar epimerase complement(3010661..3011611) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217832.1 CDS ygbM NC_006905.1 3011651 3012427 R hypothetical protein complement(3011651..3012427) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217833.1 CDS ygbL NC_006905.1 3012432 3013070 R IPR001303: Class II aldolase/adducin, N-terminal; aldolase complement(3012432..3013070) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217834.1 CDS ygbK NC_006905.1 3013067 3014329 R tRNA synthase complement(3013067..3014329) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217835.1 CDS ygbJ NC_006905.1 3014323 3015246 R IPR002204: 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase complement(3014323..3015246) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217836.1 CDS ygbI NC_006905.1 3015443 3016207 D IPR001034: Bacterial regulatory protein, DeoR family; DeoR family transcriptional regulator 3015443..3016207 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217837.1 CDS hcrR NC_006905.1 3016226 3016630 R IPR000835: Bacterial regulatory protein, MarR family; transcriptional regulator complement(3016226..3016630) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217838.1 CDS pad NC_006905.1 3016801 3017394 D IPR003382: Flavoprotein; IPR004507: Phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; flavoprotein 3016801..3017394 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217839.1 CDS vdcC NC_006905.1 3017394 3018821 D IPR002830: Carboxylyase-related protein; hypothetical protein 3017394..3018821 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217840.1 CDS SC2853 NC_006905.1 3018832 3019086 D hypothetical protein 3018832..3019086 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217841.1 CDS int NC_006905.1 3019067 3019750 R IPR001584: Integrase, catalytic domain; integrase complement(3019067..3019750) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217842.1 CDS SC2855 NC_006905.1 3019921 3020322 R hypothetical protein complement(3019921..3020322) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217843.1 CDS rpoS NC_006905.1 3020428 3021420 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(3020428..3021420) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217844.1 CDS nlpD NC_006905.1 3021483 3022604 R outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD complement(3021483..3022604) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217845.1 CDS pcm NC_006905.1 3022780 3023406 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(3022780..3023406) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217846.1 CDS surE NC_006905.1 3023400 3024161 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3023400..3024161) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217847.1 CDS truD NC_006905.1 3024142 3025191 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(3024142..3025191) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217848.1 CDS ispF NC_006905.1 3025188 3025667 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3025188..3025667) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217849.1 CDS ispD NC_006905.1 3025667 3026377 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3025667..3026377) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217850.1 CDS ftsB NC_006905.1 3026396 3026707 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(3026396..3026707) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217851.1 CDS ygbE NC_006905.1 3026898 3027254 R hypothetical protein complement(3026898..3027254) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217852.1 CDS SC2865 NC_006905.1 3027272 3027877 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(3027272..3027877) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217853.1 CDS cysN NC_006905.1 3027864 3029303 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(3027864..3029303) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217854.1 CDS cysD NC_006905.1 3029313 3030221 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3029313..3030221) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217855.1 CDS iap NC_006905.1 3030472 3031518 D catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase 3030472..3031518 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217856.1 CDS ygbF NC_006905.1 3031902 3032195 R hypothetical protein complement(3031902..3032195) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217857.1 CDS ygbT NC_006905.1 3032195 3033115 R hypothetical protein complement(3032195..3033115) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217858.1 CDS ygcH NC_006905.1 3033112 3033762 R hypothetical protein complement(3033112..3033762) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217859.1 CDS ygcI NC_006905.1 3033744 3034490 R hypothetical protein complement(3033744..3034490) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217860.1 CDS yghJ NC_006905.1 3034501 3035559 R hypothetical protein complement(3034501..3035559) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217861.1 CDS tnpA NC_006905.1 3035573 3036121 R transposase complement(3035573..3036121) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217862.1 CDS SC2875 NC_006905.1 3040429 3040680 D hypothetical protein 3040429..3040680 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217863.1 CDS sopD NC_006905.1 3040796 3041749 D hypothetical protein 3040796..3041749 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217864.1 CDS cysH NC_006905.1 3041837 3042571 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3041837..3042571) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217865.1 CDS cysI NC_006905.1 3042619 3044358 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3042619..3044358) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217866.1 CDS cysJ NC_006905.1 3044358 3046157 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha complement(3044358..3046157) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217867.1 CDS ptpS NC_006905.1 3046581 3046943 D IPR007115: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; IPR007116: 6-pyruvoyl tetrahydropterin synthase; synthase 3046581..3046943 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217868.1 CDS SC2881 NC_006905.1 3047033 3047830 R IPR001279: Beta-lactamase-like; beta-lactamase family hydrolase complement(3047033..3047830) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217869.1 CDS SC2882 NC_006905.1 3047938 3048339 D hypothetical protein 3047938..3048339 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217870.1 CDS int NC_006905.1 3048510 3049193 D IPR001584: Integrase, catalytic domain; integrase 3048510..3049193 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217871.1 CDS ygcF NC_006905.1 3049995 3050666 R hypothetical protein complement(3049995..3050666) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217872.1 CDS SC2885 NC_006905.1 3050650 3050799 R hypothetical protein complement(3050650..3050799) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217873.1 CDS eno NC_006905.1 3050802 3052100 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3050802..3052100) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217874.1 CDS pyrG NC_006905.1 3052183 3053820 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3052183..3053820) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217875.1 CDS mazG NC_006905.1 3054048 3054848 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase complement(3054048..3054848) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217876.1 CDS stfA NC_006905.1 3055456 3056043 D IPR000259: Fimbrial protein; fimbrial subunit 3055456..3056043 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217877.1 CDS steB NC_006905.1 3056123 3058822 D IPR000015: Fimbrial biogenesis outer membrane usher protein; outer membrane usher protein 3056123..3058822 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217878.1 CDS stfD NC_006905.1 3058835 3059608 D IPR001829: Bacterial pili assembly chaperone; periplasmic fimbrial chaperone 3058835..3059608 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217879.1 CDS stfE NC_006905.1 3059580 3060134 D IPR000259: Fimbrial protein; minor fimbrial subunit 3059580..3060134 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217880.1 CDS stfF NC_006905.1 3060134 3060619 D IPR000259: Fimbrial protein; minor fimbrial subunit 3060134..3060619 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217881.1 CDS yfcP NC_006905.1 3060616 3061152 D IPR000259: Fimbrial protein; fimbrial subunit 3060616..3061152 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217882.1 CDS SC2895 NC_006905.1 3061207 3062031 D hypothetical protein 3061207..3062031 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217883.1 CDS relA NC_006905.1 3062588 3064822 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase complement(3062588..3064822) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217884.1 CDS rumA NC_006905.1 3064874 3066169 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3064874..3066169) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217885.1 CDS barA NC_006905.1 3066226 3068982 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3066226..3068982 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217886.1 CDS grk NC_006905.1 3069026 3070168 R IPR004381: Conserved hypothetical protein 45; hypothetical protein complement(3069026..3070168) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217887.1 CDS gudD NC_006905.1 3070246 3071586 R IPR001354: Mandelate racemase/muconate lactonizing enzyme; d-glucarate dehydratase complement(3070246..3071586) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217888.1 CDS gudT NC_006905.1 3072944 3074302 R IPR004744: D-galactonate transporter; IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; MFS superfamily, D-glucarate permease complement(3072944..3074302) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217889.1 CDS SC2902 NC_006905.1 3074382 3074633 D hypothetical protein 3074382..3074633 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217890.1 CDS yqcA NC_006905.1 3074783 3075232 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3074783..3075232) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217891.1 CDS yqcB NC_006905.1 3075251 3076033 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(3075251..3076033) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217892.1 CDS yqcC NC_006905.1 3076033 3076419 R IPR007384: Protein of unknown function DUF446; hypothetical protein complement(3076033..3076419) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217893.1 CDS syd NC_006905.1 3076974 3077519 R SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3076974..3077519) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217894.1 CDS queF NC_006905.1 3077588 3078436 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3077588..3078436 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217895.1 CDS ygdH NC_006905.1 3078549 3079913 D IPR005269: Conserved hypothetical protein 730; hypothetical protein 3078549..3079913 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217896.1 CDS sdaC NC_006905.1 3080478 3081767 D IPR002091: Aromatic amino acid permease; IPR002422: Amino acid/polyamine transporter family II; IPR004694: Serine transporter; HAAAP family, serine transport protein 3080478..3081767 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217897.1 CDS sdaB NC_006905.1 3081826 3083193 D IPR004644: Iron-sulfur-dependent L-serine dehydratase single chain form; IPR005130: Serine dehydratase alpha chain; IPR005131: Serine dehydratase beta chain; L-serine dehydratase 3081826..3083193 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217898.1 CDS xni NC_006905.1 3083304 3084119 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3083304..3084119 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217899.1 CDS fucO NC_006905.1 3084211 3085353 R IPR001670: Iron-containing alcohol dehydrogenase; L-1,2-propanediol oxidoreductase complement(3084211..3085353) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217900.1 CDS fucA NC_006905.1 3085370 3086017 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase complement(3085370..3086017) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217901.1 CDS SC2914 NC_006905.1 3086171 3086338 R hypothetical protein complement(3086171..3086338) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217902.1 CDS fucP NC_006905.1 3086573 3087889 D IPR005275: L-fucose permease; IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; L-fucose transporter 3086573..3087889 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217903.1 CDS fucI NC_006905.1 3087921 3089696 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3087921..3089696 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217904.1 CDS fucK NC_006905.1 3089797 3091215 D IPR000577: Carbohydrate kinase, FGGY; L-fuculokinase 3089797..3091215 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217905.1 CDS fucU NC_006905.1 3091217 3091639 D IPR007721: RbsD or FucU transport; fucose operon protein 3091217..3091639 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217906.1 CDS fucR NC_006905.1 3091697 3092407 D regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3091697..3092407 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217907.1 CDS ygdE NC_006905.1 3092466 3093566 R RNA 2'-O-ribose methyltransferase complement(3092466..3093566) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217908.1 CDS ygdD NC_006905.1 3093559 3093954 R IPR006696: Protein of unknown function DUF423; hypothetical protein complement(3093559..3093954) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217909.1 CDS gcvA NC_006905.1 3093973 3094890 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3093973..3094890) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217910.1 CDS ygdI NC_006905.1 3095229 3095456 R lipoprotein complement(3095229..3095456) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217911.1 CDS csdA NC_006905.1 3095649 3096854 D IPR000192: Aminotransferase, class V; cysteine sulfinate desulfinase 3095649..3096854 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217912.1 CDS ygdK NC_006905.1 3096854 3097297 D IPR003808: Protein of unknown function UPF0050; hypothetical protein 3096854..3097297 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217913.1 CDS rarD NC_006905.1 3097570 3098484 D IPR000620: Protein of unknown function DUF6; IPR004626: RarD protein; hypothetical protein 3097570..3098484 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217914.1 CDS ygdL NC_006905.1 3098536 3099342 R IPR000205: NAD-binding site; IPR000594: UBA/THIF-type NAD/FAD binding fold; hypothetical protein complement(3098536..3099342) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217915.1 CDS mltA NC_006905.1 3099452 3100549 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A complement(3099452..3100549) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217916.1 CDS amiC NC_006905.1 3101049 3102302 R IPR002508: Cell wall hydrolase/autolysin; IPR006311: Twin-arginine translocation pathway signal; N-acetylmuramoyl-L-alanine amidase complement(3101049..3102302) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217917.1 CDS argA NC_006905.1 3102535 3103866 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3102535..3103866 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217918.1 CDS recD NC_006905.1 3103969 3105804 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha complement(3103969..3105804) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217919.1 CDS recB NC_006905.1 3105801 3109346 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta complement(3105801..3109346) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217920.1 CDS ptr NC_006905.1 3109339 3112227 R IPR001431: Peptidase M16, insulinase-like; IPR007863: Peptidase M16 inactive; protease III complement(3109339..3112227) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217921.1 CDS recC NC_006905.1 3112405 3115776 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma complement(3112405..3115776) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217922.1 CDS ppdC NC_006905.1 3115792 3116112 R IPR001120: Prokaryotic N-terminal methylation site; hypothetical protein complement(3115792..3116112) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217923.1 CDS ygdB NC_006905.1 3116097 3116504 R hypothetical protein complement(3116097..3116504) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217924.1 CDS ppdB NC_006905.1 3116501 3117064 R IPR001120: Prokaryotic N-terminal methylation site; hypothetical protein complement(3116501..3117064) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217925.1 CDS ppdA NC_006905.1 3117055 3117525 R IPR001120: Prokaryotic N-terminal methylation site; hypothetical protein complement(3117055..3117525) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217927.1 CDS thyA NC_006905.1 3117710 3118504 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(3117710..3118504) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217928.1 CDS lgt NC_006905.1 3118511 3119386 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3118511..3119386) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217929.1 CDS ptsP NC_006905.1 3119602 3121848 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain complement(3119602..3121848) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217930.1 CDS ygdP NC_006905.1 3121861 3122391 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3121861..3122391) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217931.1 CDS mutH NC_006905.1 3123074 3123769 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3123074..3123769 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217932.1 CDS ygdQ NC_006905.1 3123951 3124664 D IPR005496: Integral membrane protein TerC family; hypothetical protein 3123951..3124664 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217933.1 CDS ygdR NC_006905.1 3124834 3125052 D POT family peptide transport protein 3124834..3125052 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217934.1 CDS tas NC_006905.1 3125243 3126283 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 3125243..3126283 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217935.1 CDS ygeD NC_006905.1 3126370 3127572 R lysophospholipid transporter LplT complement(3126370..3127572) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217936.1 CDS aas NC_006905.1 3127565 3129724 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(3127565..3129724) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217937.1 CDS galR NC_006905.1 3130316 3131344 D controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3130316..3131344 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217938.1 CDS SC2951 NC_006905.1 3131265 3132377 D IPR000843: Bacterial regulatory protein LacI, HTH motif; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; transcriptional regulator 3131265..3132377 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217939.1 CDS lysA NC_006905.1 3132387 3133649 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(3132387..3133649) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217940.1 CDS lysR NC_006905.1 3133767 3134702 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; LysR family transcriptional regulator 3133767..3134702 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217941.1 CDS ygeA NC_006905.1 3134674 3135354 R IPR001920: Asp/Glu racemase; IPR004380: Aspartate racemase; racemase complement(3134674..3135354) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217942.1 CDS araE NC_006905.1 3135494 3136912 R IPR003663: Sugar transporter; IPR005828: General substrate transporter; IPR005829: Sugar transporter superfamily;IPR007114: Major facilitator superfamily; major facilitator superfamily L-arabinose: proton symporter complement(3135494..3136912) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217943.1 CDS kduD NC_006905.1 3137265 3138026 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase complement(3137265..3138026) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217944.1 CDS kduI NC_006905.1 3138083 3138919 R 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase complement(3138083..3138919) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217945.2 CDS yqeF NC_006905.1 3139349 3140527 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(3139349..3140527) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217946.1 CDS SC2959 NC_006905.1 3140650 3140997 R LysR family transcriptional regulator complement(3140650..3140997) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217947.1 CDS SC2960 NC_006905.1 3141045 3141281 D IPR007896: Bacterial transmembrane pair; inner membrane protein 3141045..3141281 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217948.1 CDS yqeG NC_006905.1 3141423 3142652 D IPR002091: Aromatic amino acid permease; IPR002422: Amino acid/polyamine transporter family II; transporter 3141423..3142652 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217949.1 CDS yohL NC_006905.1 3142683 3142955 R IPR003735: Protein of unknown function DUF156; hypothetical protein complement(3142683..3142955) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217950.1 CDS SC2963 NC_006905.1 3144154 3144912 R hypothetical protein complement(3144154..3144912) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217951.1 CDS SC2964 NC_006905.1 3144899 3145405 R hypothetical protein complement(3144899..3145405) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217952.1 CDS SC2965 NC_006905.1 3145512 3145694 R outer membrane protein complement(3145512..3145694) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217953.1 CDS SC2966 NC_006905.1 3145796 3146581 R hypothetical protein complement(3145796..3146581) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217954.1 CDS stdC NC_006905.1 3146578 3147321 R IPR001829: Bacterial pili assembly chaperone; fimbrial chaperone protein complement(3146578..3147321) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217955.1 CDS stdB NC_006905.1 3147362 3149851 R IPR000015: Fimbrial biogenesis outer membrane usher protein; outer membrane usher protein complement(3147362..3149851) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217956.1 CDS stdA NC_006905.1 3149971 3150681 R IPR000259: Fimbrial protein; fimbrial-like protein complement(3149971..3150681) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217957.1 CDS yfdX NC_006905.1 3151274 3151906 R hypothetical protein complement(3151274..3151906) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217958.1 CDS pagC NC_006905.1 3151953 3152489 R IPR000758: Virulence-related outer membrane protein; hypothetical protein complement(3151953..3152489) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217959.1 CDS SC2972 NC_006905.1 3152535 3152762 R hypothetical protein complement(3152535..3152762) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217960.1 CDS pilT NC_006905.1 3153295 3153693 R stability determinant protein; plasmid maintenance protein complement(3153295..3153693) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217961.1 CDS yge NC_006905.1 3153693 3154058 R IPR007159: SpoVT/AbrB-like domain; hypothetical protein complement(3153693..3154058) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217962.1 CDS SC2975 NC_006905.1 3154129 3154380 D hypothetical protein 3154129..3154380 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217963.1 CDS SC2976 NC_006905.1 3154821 3155462 D hypothetical protein 3154821..3155462 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217965.1 CDS ygeR NC_006905.1 3155747 3156505 R IPR002482: Peptidoglycan-binding LysM; IPR002886: Peptidase M23/M37; metalloendopeptidase complement(3155747..3156505) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217966.1 CDS idi NC_006905.1 3156770 3157315 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3156770..3157315 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217967.1 CDS lysS NC_006905.1 3157391 3158908 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(3157391..3158908) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217968.1 CDS prfB NC_006905.1 3158918 3159799 R IPR000352: Class I peptide chain release factor domain; IPR004374: Peptide chain release factor 2; IPR005139: PCRF domain; peptide chain release factor 2 complement(3158918..3159799) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217969.1 CDS recJ NC_006905.1 3160121 3161854 R 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ complement(3160121..3161854) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217970.1 CDS dsbC NC_006905.1 3161860 3162573 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC complement(3161860..3162573) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217971.1 CDS xerD NC_006905.1 3162597 3163493 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(3162597..3163493) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217972.2 CDS fldB NC_006905.1 3163606 3164127 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 3163606..3164127 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217973.1 CDS ygfX NC_006905.1 3164180 3164593 R hypothetical protein complement(3164180..3164593) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217974.1 CDS ygfY NC_006905.1 3164574 3164840 R IPR005631: Protein of unknown function DUF339; hypothetical protein complement(3164574..3164840) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217975.1 CDS SC2988 NC_006905.1 3164839 3165075 D hypothetical protein 3164839..3165075 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217976.1 CDS ygfZ NC_006905.1 3165090 3166070 D physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; global regulator 3165090..3166070 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217977.1 CDS yqfA NC_006905.1 3166186 3166845 R IPR004254: Hly-III related proteins; IPR005744: HylII; hypothetical protein complement(3166186..3166845) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217978.1 CDS yqfB NC_006905.1 3167009 3167320 R hypothetical protein complement(3167009..3167320) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217979.1 CDS bglA NC_006905.1 3167478 3168911 D IPR001360: Glycoside hydrolase, family 1; 6-phospho-beta-glucosidase 3167478..3168911 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217980.1 CDS SC2993 NC_006905.1 3168959 3169852 R outer membrane protein complement(3168959..3169852) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217981.2 CDS gcvP NC_006905.1 3170308 3173181 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3170308..3173181) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217982.1 CDS gcvH NC_006905.1 3173344 3173733 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3173344..3173733) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217983.1 CDS gcvT NC_006905.1 3173759 3174853 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(3173759..3174853) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217984.1 CDS SC2997 NC_006905.1 3175308 3176510 R IPR000205: NAD-binding site; IPR000689: UbiH/COQ6 monooxygenase; IPR000733: Flavoprotein monooxygenase;IPR003042: Aromatic-ring hydroxylase; hypothetical protein complement(3175308..3176510) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217985.1 CDS ubiH NC_006905.1 3176633 3177811 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3176633..3177811) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217986.1 CDS pepP NC_006905.1 3177808 3179124 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II complement(3177808..3179124) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217987.2 CDS ygfB NC_006905.1 3179150 3179728 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(3179150..3179728) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217988.1 CDS ygfE NC_006905.1 3179895 3180224 D IPR007838: Protein of unknown function DUF710; Z-ring-associated protein 3179895..3180224 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217989.2 CDS ygfA NC_006905.1 3180519 3181067 D ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 3180519..3181067 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217990.1 CDS serA NC_006905.1 3181449 3182681 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(3181449..3182681) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217991.1 CDS rpiA NC_006905.1 3182948 3183607 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(3182948..3183607) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217992.1 CDS iciA NC_006905.1 3183761 3184654 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3183761..3184654 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217993.1 CDS SC3006 NC_006905.1 3184666 3184917 D hypothetical protein 3184666..3184917 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217994.1 CDS yggE NC_006905.1 3184920 3185666 R IPR007497: Protein of unknown function DUF541; hypothetical protein complement(3184920..3185666) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217995.1 CDS yggA NC_006905.1 3185760 3186395 R Involved in the export of arginine; arginine exporter protein complement(3185760..3186395) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217996.1 CDS yggB NC_006905.1 3186596 3187456 R participates in the regulation of osmotic pressure changes within the cel; mechanosensitive ion channel MscS complement(3186596..3187456) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217997.2 CDS fba NC_006905.1 3187689 3188768 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(3187689..3188768) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217998.1 CDS pgk NC_006905.1 3188870 3190033 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3188870..3190033) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_217999.1 CDS epd NC_006905.1 3190055 3191101 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(3190055..3191101) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218000.1 CDS SC3013 NC_006905.1 3191475 3191900 D IPR005175: Protein of unknown function DUF296; hypothetical protein 3191475..3191900 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218001.1 CDS SC3014 NC_006905.1 3191926 3192504 D hypothetical protein 3191926..3192504 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218002.1 CDS SC3015 NC_006905.1 3192505 3193212 D hypothetical protein 3192505..3193212 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218003.1 CDS cbiO NC_006905.1 3193200 3193877 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; cobalt ABC transporter ATPase 3193200..3193877 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218004.1 CDS cysA NC_006905.1 3193826 3194527 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; cobalt ABC transporter ATPase 3193826..3194527 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218005.1 CDS tktA NC_006905.1 3194571 3196562 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(3194571..3196562) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218006.1 CDS yggG NC_006905.1 3196838 3197596 D IPR001915: Peptidase M48; Zn-dependent protease with chaperone function 3196838..3197596 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218007.1 CDS speB NC_006905.1 3197697 3198617 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3197697..3198617) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218008.1 CDS yhcH NC_006905.1 3201329 3201802 R IPR004375: Conserved hypothetical protein 22; mannitol dehydrogenase complement(3201329..3201802) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218009.1 CDS yjmC NC_006905.1 3201841 3202848 R IPR003767: Malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase complement(3201841..3202848) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218010.1 CDS yjjN NC_006905.1 3202862 3203878 R IPR000205: NAD-binding site; IPR002085: Zinc-containing alcohol dehydrogenase superfamily; IPR002328: Zinc-containing alcohol dehydrogenase; zinc-binding dehydrogenase complement(3202862..3203878) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218011.1 CDS uxuR NC_006905.1 3206586 3207386 R IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator complement(3206586..3207386) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218012.1 CDS SC3025 NC_006905.1 3207540 3208271 R outer membrane lipoprotein complement(3207540..3208271) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218013.1 CDS speA NC_006905.1 3208416 3210314 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(3208416..3210314) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218014.1 CDS yqgB NC_006905.1 3210401 3210532 R hypothetical protein complement(3210401..3210532) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218015.1 CDS yqgC NC_006905.1 3210666 3210830 D hypothetical protein 3210666..3210830 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218016.1 CDS yqgD NC_006905.1 3210827 3211126 R inner membrane protein complement(3210827..3211126) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218017.1 CDS metK NC_006905.1 3211182 3212336 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3211182..3212336 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218018.1 CDS galP NC_006905.1 3212829 3214223 D IPR003663: Sugar transporter; IPR005828: General substrate transporter; IPR005829: Sugar transporter superfamily;IPR007114: Major facilitator superfamily; major facilitator superfamily galactose:proton symporter 3212829..3214223 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218019.1 CDS sprT NC_006905.1 3214302 3214799 D IPR005622: metallopeptidase (SprT family); IPR006025: Neutral zinc metallopeptidases, zinc-binding site; IPR006640: SprT; hypothetical protein 3214302..3214799 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218020.1 CDS endA NC_006905.1 3214895 3215602 D IPR007346: Endonuclease I; DNA-specific endonuclease I 3214895..3215602 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218021.2 CDS yggJ NC_006905.1 3215679 3216410 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3215679..3216410 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218022.1 CDS gshB NC_006905.1 3216430 3217377 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3216430..3217377 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218023.2 CDS yqgE NC_006905.1 3217593 3218156 D IPR003774: Protein of unknown function DUF179; hypothetical protein 3217593..3218156 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218024.1 CDS yqgF NC_006905.1 3218156 3218572 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3218156..3218572 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218025.1 CDS SC3038 NC_006905.1 3218619 3219335 R IPR005471: Bacterial regulatory proteins, IclR family; transcriptional regulator complement(3218619..3219335) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218026.1 CDS yggR NC_006905.1 3219437 3220417 R IPR001482: Bacterial type II secretion system protein E; IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003593: AAA ATPase;IPR006321: Pilus retraction protein PilT; protein transport complement(3219437..3220417) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218027.1 CDS yggS NC_006905.1 3220435 3221139 D IPR001608: Protein of unknown function UPF0001; hypothetical protein 3220435..3221139 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218028.1 CDS yggT NC_006905.1 3221158 3221724 D IPR003425: Protein of unknown function YGGT; hypothetical protein 3221158..3221724 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218029.2 CDS yggU NC_006905.1 3221721 3222011 D IPR003746: Protein of unknown function DUF167; IPR005228: Conserved hypothetical protein 251; hypothetical protein 3221721..3222011 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218030.1 CDS yggV NC_006905.1 3222019 3222612 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3222019..3222612 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218031.1 CDS yggW NC_006905.1 3222566 3223741 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3222566..3223741 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218032.1 CDS yggM NC_006905.1 3223833 3224840 R hypothetical protein complement(3223833..3224840) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218033.1 CDS ansB NC_006905.1 3224973 3226019 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II complement(3224973..3226019) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218034.1 CDS SC3047 NC_006905.1 3226038 3226190 R hypothetical protein complement(3226038..3226190) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218035.1 CDS yggN NC_006905.1 3226208 3226927 R hypothetical protein complement(3226208..3226927) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218036.1 CDS yggL NC_006905.1 3226977 3227303 R IPR007416: Protein with unknown function DUF469; hypothetical protein complement(3226977..3227303) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218037.1 CDS trmB NC_006905.1 3227303 3228022 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3227303..3228022) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218038.1 CDS mutY NC_006905.1 3228177 3229229 D IPR000445: Helix-hairpin-helix motif; IPR003265: HhH-GPD; IPR003651: Iron-sulfur cluster loop;IPR004035: Endonuclease III, FCL;IPR004036: Endonuclease III, HhH;IPR005760: A/G-specific adenine glycosylase MutY; adenine DNA glycosylase 3228177..3229229 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218039.1 CDS yggX NC_006905.1 3229257 3229532 D IPR007457: Protein of unknown function DUF495; hypothetical protein 3229257..3229532 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218040.1 CDS mltC NC_006905.1 3229645 3230730 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 3229645..3230730 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218041.1 CDS nupG NC_006905.1 3230947 3232203 D IPR004740: Nucleoside:H+ symporter; IPR007114: Major facilitator superfamily; major facilitator superfamily nucleoside transporter 3230947..3232203 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218042.2 CDS speC NC_006905.1 3232265 3234400 R IPR000310: Orn/Lys/Arg decarboxylase, major region; IPR005308: Orn/Lys/Arg decarboxylase, N-terminal domain; IPR008286: Orn/Lys/Arg decarboxylase, C-terminal; ornithine decarboxylase complement(3232265..3234400) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218043.1 CDS yqgA NC_006905.1 3234820 3235527 D IPR007563: Protein of unknown function DUF554; hypothetical protein 3234820..3235527 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218044.1 CDS agl NC_006905.1 3235867 3236301 R IPR004360: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; lactoylglutathione lyase complement(3235867..3236301) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218045.1 CDS ach NC_006905.1 3236312 3237637 R IPR003702: Acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase complement(3236312..3237637) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218046.1 CDS maoC NC_006905.1 3237662 3238189 R IPR002539: MaoC-like dehydratase; monoamine oxidase complement(3237662..3238189) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218047.1 CDS cilB NC_006905.1 3238213 3239055 R IPR001064: Beta and gamma crystallin; LysR family transcriptional regulator complement(3238213..3239055) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218048.1 CDS stmR NC_006905.1 3239147 3240025 D IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; LysR family transcriptional regulator 3239147..3240025 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218049.1 CDS ars NC_006905.1 3240073 3241812 R IPR000917: Sulfatase; arylsulfatase complement(3240073..3241812) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218050.1 CDS arsR NC_006905.1 3241881 3243065 R IPR007197: Radical SAM; arylsulfatase regulator complement(3241881..3243065) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218051.1 CDS moaR NC_006905.1 3243577 3244260 D IPR000792: Bacterial regulatory protein, LuxR family; response regulator 3243577..3244260 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218052.1 CDS SC3065 NC_006905.1 3244365 3244922 R hypothetical protein complement(3244365..3244922) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218053.1 CDS SC3066 NC_006905.1 3244900 3246399 R IPR002293: Amino acid/polyamine transporter family I; IPR004841: Amino acid permease-associated region; amino acid transporter complement(3244900..3246399) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218054.1 CDS SC3067 NC_006905.1 3246608 3246982 R IPR007113: Cupin domain; IPR008579: Protein of unknown function DUF861; hypothetical protein complement(3246608..3246982) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218055.1 CDS ordL NC_006905.1 3246997 3248298 R IPR000205: NAD-binding site; IPR000408: Regulator of chromosome condensation, RCC1; oxidoreductase complement(3246997..3248298) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218056.1 CDS feaB NC_006905.1 3248460 3249944 D IPR002086: Aldehyde dehydrogenase; NAD-dependent aldehyde dehydrogenase 3248460..3249944 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218057.1 CDS iraD NC_006905.1 3250080 3250460 R inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein complement(3250080..3250460) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218058.1 CDS SC3071 NC_006905.1 3250460 3250945 R IPR008514: Protein of unknown function DUF796; hypothetical protein complement(3250460..3250945) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218059.1 CDS SC3072 NC_006905.1 3251238 3251393 D hypothetical protein 3251238..3251393 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218060.1 CDS xcd NC_006905.1 3251654 3252577 R IPR002509: Polysaccharide deacetylase; hypothetical protein complement(3251654..3252577) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218061.1 CDS yhcX NC_006905.1 3252616 3253494 R IPR000276: Rhodopsin-like GPCR superfamily; IPR003010: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; amidohydrolase complement(3252616..3253494) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218062.1 CDS exuT NC_006905.1 3253889 3255193 R IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; permease complement(3253889..3255193) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218063.1 CDS uxuA NC_006905.1 3255553 3256782 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3255553..3256782 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218064.1 CDS uxuB NC_006905.1 3256893 3258365 D IPR000669: Mannitol dehydrogenase; IPR001993: Mitochondrial substrate carrier; D-mannonate oxidoreductase 3256893..3258365 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218065.1 CDS uxaC NC_006905.1 3258377 3259789 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3258377..3259789 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218066.1 CDS mac NC_006905.1 3260089 3261144 R IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein; hypothetical protein complement(3260089..3261144) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218067.1 CDS gsp NC_006905.1 3261814 3263670 R catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3261814..3263670) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218068.1 CDS yghU NC_006905.1 3263897 3264763 D YghU; B2989; one of eight glutathione transferases from E. coli; glutathione S-transferase 3263897..3264763 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218069.1 CDS mbp NC_006905.1 3264831 3265484 R molybdate ABC transporter periplasmic molybdate-binding protein complement(3264831..3265484) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218070.1 CDS fbp NC_006905.1 3265532 3266584 R IPR002491: Periplasmic binding protein; ferrichrome-binding periplasmic protein complement(3265532..3266584) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218071.1 CDS hybG NC_006905.1 3266660 3266908 R IPR001109: Hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase 2 accessory protein HypG complement(3266660..3266908) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218072.1 CDS hypA NC_006905.1 3266936 3267277 R plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF complement(3266936..3267277) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218073.1 CDS hybE NC_006905.1 3267270 3267758 R hydrogenase 2-specific chaperone complement(3267270..3267758) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218074.1 CDS hybD NC_006905.1 3267751 3268245 R protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase complement(3267751..3268245) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218075.1 CDS hybC NC_006905.1 3268245 3269948 R involved in hydrogen uptake; hydrogenase 2 large subunit complement(3268245..3269948) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218076.1 CDS hybB NC_006905.1 3269945 3271123 R HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; hydrogenase 2 b cytochrome subunit complement(3269945..3271123) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218077.1 CDS hybA NC_006905.1 3271113 3272099 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA complement(3271113..3272099) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218078.1 CDS hypO NC_006905.1 3272102 3273220 R involved in hydrogen uptake; hydrogenase 2 small subunit complement(3272102..3273220) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218079.1 CDS SC3092 NC_006905.1 3273228 3273413 R hypothetical protein complement(3273228..3273413) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218080.1 CDS yghW NC_006905.1 3273410 3273697 R hypothetical protein complement(3273410..3273697) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218081.1 CDS mcp1 NC_006905.1 3273782 3275425 R IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein;IPR004091: Aspartate chemoreceptor protein; methyl-accepting chemotaxis protein complement(3273782..3275425) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218082.1 CDS yqhA NC_006905.1 3275732 3276226 R IPR005134: Uncharacterized protein family UPF0114; hypothetical protein complement(3275732..3276226) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218083.1 CDS SC3096 NC_006905.1 3276505 3277020 R ATP-dependent RNA helicase-like protein complement(3276505..3277020) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218084.1 CDS SC3097 NC_006905.1 3277112 3277522 D hypothetical protein 3277112..3277522 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218085.1 CDS SC3098 NC_006905.1 3277509 3277913 D hypothetical protein 3277509..3277913 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218086.1 CDS yghA NC_006905.1 3278037 3278921 D IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; oxidoreductase 3278037..3278921 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218087.1 CDS exbD NC_006905.1 3279034 3279459 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD complement(3279034..3279459) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218088.1 CDS exbB NC_006905.1 3279443 3280174 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB complement(3279443..3280174) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218089.1 CDS SC3102 NC_006905.1 3280182 3280331 R hypothetical protein complement(3280182..3280331) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218090.1 CDS SC3103 NC_006905.1 3280415 3280816 D hypothetical protein 3280415..3280816 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218091.1 CDS yis2 NC_006905.1 3280987 3281670 D IPR001584: Integrase, catalytic domain; integrase 3280987..3281670 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218092.1 CDS metC NC_006905.1 3281615 3282943 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3281615..3282943 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218093.1 CDS yghB NC_006905.1 3283083 3283742 D IPR000252: DedA family; DedA family membrane protein 3283083..3283742 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218094.1 CDS yqhC NC_006905.1 3283806 3284726 R IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator complement(3283806..3284726) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218095.1 CDS yqhD NC_006905.1 3284898 3286061 D IPR001670: Iron-containing alcohol dehydrogenase; alcohol dehydrogenase 3284898..3286061 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218096.1 CDS dkgA NC_006905.1 3286167 3286994 D methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 3286167..3286994 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218097.1 CDS sot NC_006905.1 3287191 3288645 D IPR001898: Sodium/sulphate symporter; cation transporter 3287191..3288645 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218098.1 CDS hit NC_006905.1 3288690 3289145 D IPR001310: Histidine triad (HIT) protein; hypothetical protein 3288690..3289145 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218099.1 CDS ygiR NC_006905.1 3289700 3291871 R IPR005839: Protein of unknown function UPF0004; IPR006638: Elongator protein 3/MiaB/NifB; IPR007197: Radical SAM; hypothetical protein complement(3289700..3291871) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218100.1 CDS yiiZ NC_006905.1 3292359 3293342 D IPR004682: TRAP dicarboxylate transporter- DctP subunit; dicarboxylate-binding periplasmic protein 3292359..3293342 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218101.1 CDS yiaM NC_006905.1 3293384 3293866 D IPR007387: Tripartite ATP-independent periplasmic transporters, DctQ component; inner membrane protein 3293384..3293866 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218102.1 CDS ygiK NC_006905.1 3293877 3295184 D IPR000252: DedA family; IPR004681: TRAP dicarboxylate transporter DctM subunit; integral membrane protein, transporter 3293877..3295184 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218103.1 CDS sufI NC_006905.1 3295229 3296641 R IPR001117: Multicopper oxidase, type 1; IPR006311: Twin-arginine translocation pathway signal; repressor protein for FtsI complement(3295229..3296641) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218104.1 CDS SC3117 NC_006905.1 3296715 3297452 R IPR002123: Phospholipid/glycerol acyltransferase; IPR004552: 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3296715..3297452) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218105.1 CDS parC NC_006905.1 3297709 3299958 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3297709..3299958) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218106.1 CDS ygiV NC_006905.1 3300078 3300944 R IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator complement(3300078..3300944) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218107.1 CDS ygiW NC_006905.1 3301016 3301408 R IPR005220: Conserved hypothetical protein 156; outer membrane protein complement(3301016..3301408) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218108.1 CDS ygiX NC_006905.1 3301407 3302219 D response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3301407..3302219 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218109.1 CDS ygiY NC_006905.1 3302216 3303565 D IPR003594: ATP-binding region, ATPase-like; IPR003660: Histidine kinase, HAMP region; IPR003661: Histidine kinase A, N-terminal;IPR004358: Bacterial sensor protein, C-terminal;IPR005467: Histidine kinase; sensor protein QseC 3302216..3303565 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218110.1 CDS mdaB NC_006905.1 3303672 3304253 D IPR003680: NAD(P)H dehydrogenase (quinone); NADPH specific quinone oxidoreductase (drug modulator) 3303672..3304253 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218111.1 CDS ygiN NC_006905.1 3304285 3304599 D IPR005479: Carbamoyl-phosphate synthase L chain, ATP-binding; IPR007138: Antibiotic biosynthesis monooxygenase; hypothetical protein 3304285..3304599 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218112.1 CDS parE NC_006905.1 3304724 3306616 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3304724..3306616) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218113.1 CDS yqiA NC_006905.1 3306644 3307225 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase complement(3306644..3307225) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218114.1 CDS icc NC_006905.1 3307225 3308052 R IPR004843: Metallo-phosphoesterase; cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3307225..3308052) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218115.1 CDS yqiB NC_006905.1 3308077 3308499 R hypothetical protein complement(3308077..3308499) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218116.1 CDS nudF NC_006905.1 3308496 3309128 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase complement(3308496..3309128) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218117.2 CDS tolC NC_006905.1 3309335 3310804 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3309335..3310804 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218118.1 CDS ygiB NC_006905.1 3311017 3311688 D hypothetical protein 3311017..3311688 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218119.1 CDS ygiC NC_006905.1 3311694 3312857 D IPR005494: Glutathionylspermidine synthase; hypothetical protein 3311694..3312857 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218120.1 CDS ygiD NC_006905.1 3312919 3313749 R seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein complement(3312919..3313749) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218121.1 CDS ygiE NC_006905.1 3313848 3314621 D IPR003689: Zinc transporter ZIP; zinc transporter ZupT 3313848..3314621 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218122.1 CDS SC3135 NC_006905.1 3314688 3314864 R hypothetical protein complement(3314688..3314864) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218123.1 CDS astJ NC_006905.1 3315264 3317060 D arylsulfate sulfotransferase 3315264..3317060 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218124.1 CDS dsbA NC_006905.1 3317080 3317751 D IPR001853: DSBA oxidoreductase; thiol-disulfide isomerase and thioredoxin 3317080..3317751 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218125.1 CDS dsbI NC_006905.1 3317766 3318443 D disulfide oxidoreductase 3317766..3318443 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218126.1 CDS SC3139 NC_006905.1 3318657 3319058 D hypothetical protein 3318657..3319058 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218127.1 CDS yis2 NC_006905.1 3319229 3319912 D IPR001584: Integrase, catalytic domain; integrase 3319229..3319912 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218128.1 CDS ribB NC_006905.1 3319929 3320582 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3319929..3320582) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218129.1 CDS yqiC NC_006905.1 3320674 3321315 D IPR007475: Protein of unknown function DUF526; hypothetical protein 3320674..3321315 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218130.1 CDS glgS NC_006905.1 3321390 3321593 R Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS complement(3321390..3321593) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218131.1 CDS SC3144 NC_006905.1 3321696 3321845 R hypothetical protein complement(3321696..3321845) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218132.1 CDS yqiJ NC_006905.1 3321857 3322477 D inner membrane protein 3321857..3322477 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218133.1 CDS yqiK NC_006905.1 3322496 3324175 D IPR001107: Band 7 protein; hypothetical protein 3322496..3324175 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218134.1 CDS rfaE NC_006905.1 3324634 3326067 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3324634..3326067) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218135.1 CDS glnE NC_006905.1 3326115 3328958 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3326115..3328958) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218136.1 CDS ygiF NC_006905.1 3329076 3330377 R IPR007899: CHAD; IPR008172: Adenylate cyclase; hypothetical protein complement(3329076..3330377) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218137.1 CDS ygiM NC_006905.1 3330619 3331233 D IPR003646: Bacterial SH3-like region; signal transduction protein 3330619..3331233 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218138.1 CDS cca NC_006905.1 3331296 3332537 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3331296..3332537 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218139.1 CDS uppP NC_006905.1 3332642 3333466 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3332642..3333466) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218140.1 CDS folB NC_006905.1 3333561 3333923 R catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3333561..3333923) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218141.1 CDS ygiH NC_006905.1 3334027 3334638 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3334027..3334638 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218142.1 CDS gcp NC_006905.1 3334888 3335901 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(3334888..3335901) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218143.1 CDS rpsU NC_006905.1 3336129 3336344 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3336129..3336344 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218144.1 CDS dnaG NC_006905.1 3336580 3338325 D synthesizes RNA primers at the replication forks; DNA primase 3336580..3338325 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218145.1 CDS rpoD NC_006905.1 3338340 3340316 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3338340..3340316 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218146.1 CDS mug NC_006905.1 3340439 3340945 R IPR005122: Uracil-DNA glycosylase superfamily; G/U mismatch-specific DNA glycosylase complement(3340439..3340945) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218147.1 CDS yqjH NC_006905.1 3341226 3341993 R IPR007037: Siderophore-interacting protein; hypothetical protein complement(3341226..3341993) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218148.1 CDS yqjI NC_006905.1 3342225 3342872 D IPR005149: Transcriptional regulator PadR-like family; transcriptional regulator 3342225..3342872 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218149.1 CDS mcp2 NC_006905.1 3342869 3344434 R IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(3342869..3344434) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218150.1 CDS aer NC_006905.1 3344822 3346342 R senses cellular redox state or proton motive force; IPR000014: PAS domain; IPR001610: PAC motif; IPR003660: Histidine kinase, HAMP region;IPR004089: Bacterial chemotaxis sensory transducer;IPR004090: Methyl-accepting chemotaxis protein; aerotaxis sensor receptor complement(3344822..3346342) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218151.1 CDS SC3164 NC_006905.1 3346354 3346509 D hypothetical protein 3346354..3346509 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218152.2 CDS oat NC_006905.1 3346745 3348151 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3346745..3348151 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218153.1 CDS fadH NC_006905.1 3348322 3350340 D IPR000205: NAD-binding site; IPR000759: Adrenodoxin reductase; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I;IPR001155: NADH:flavin oxidoreductase/NADH oxidase;IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 2,4-dienoyl-CoA reductase 3348322..3350340 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218154.1 CDS ygjO NC_006905.1 3350421 3351557 R IPR000051: SAM (and some other nucleotide) binding motif; IPR002052: N-6 Adenine-specific DNA methylase; IPR007848: Methyltransferase small; hypothetical protein complement(3350421..3351557) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218155.1 CDS ygjP NC_006905.1 3351643 3352140 D hypothetical protein 3351643..3352140 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218156.1 CDS ygjQ NC_006905.1 3352292 3352984 D integral membrane protein 3352292..3352984 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218157.1 CDS ygjR NC_006905.1 3353073 3354071 D IPR000683: Oxidoreductase, N-terminal; dehydrogenase 3353073..3354071 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218158.1 CDS ygjT NC_006905.1 3354340 3355308 D IPR005496: Integral membrane protein TerC family; resistance protein 3354340..3355308 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218159.1 CDS ygjU NC_006905.1 3355563 3356807 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3355563..3356807 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218160.1 CDS yqjA NC_006905.1 3357257 3357919 D IPR000252: DedA family; DedA family membrane protein 3357257..3357919 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218161.1 CDS yqjB NC_006905.1 3357923 3358306 D hypothetical protein 3357923..3358306 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218162.1 CDS yqjC NC_006905.1 3358451 3358819 D hypothetical protein 3358451..3358819 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218163.1 CDS yqjD NC_006905.1 3358861 3359166 D hypothetical protein 3358861..3359166 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218164.1 CDS yqjE NC_006905.1 3359169 3359567 D hypothetical protein 3359169..3359567 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218165.1 CDS yqjK NC_006905.1 3359564 3359863 D hypothetical protein 3359564..3359863 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218166.1 CDS yqjF NC_006905.1 3360008 3360493 D IPR007301: DoxD-like protein; membrane-associated protein 3360008..3360493 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218167.1 CDS yhaH NC_006905.1 3361671 3362036 D IPR008523: Protein of unknown function DUF805; hypothetical protein 3361671..3362036 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218168.1 CDS yhaJ NC_006905.1 3362075 3362971 R IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; LysR family transcriptional regulator complement(3362075..3362971) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218169.1 CDS yhaK NC_006905.1 3363076 3363777 D IPR003829: Pirin, N-terminal; hypothetical protein 3363076..3363777 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218170.1 CDS yhaL NC_006905.1 3363801 3363965 D hypothetical protein 3363801..3363965 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218171.1 CDS yhaN NC_006905.1 3364078 3365388 R hypothetical protein complement(3364078..3365388) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218172.1 CDS yhaO NC_006905.1 3365414 3366745 R IPR002091: Aromatic amino acid permease; IPR002422: Amino acid/polyamine transporter family II; IPR004694: Serine transporter; HAAAP family transport protein complement(3365414..3366745) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218173.1 CDS tdcG NC_006905.1 3367060 3368424 R IPR004644: Iron-sulfur-dependent L-serine dehydratase single chain form; IPR005130: Serine dehydratase alpha chain; IPR005131: Serine dehydratase beta chain; L-serine deaminase complement(3367060..3368424) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218174.1 CDS tdcE NC_006905.1 3368494 3370788 R IPR001150: Formate C-acetyltransferase glycine radical; IPR004184: Pyruvate formate-lyase, PFL; IPR005949: Formate acetyltransferase; pyruvate formate-lyase 4/ 2-ketobutyrate formate-lyase complement(3368494..3370788) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218175.1 CDS tdcD NC_006905.1 3370822 3372030 R catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase complement(3370822..3372030) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218176.1 CDS tdcC NC_006905.1 3372097 3373428 R involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC complement(3372097..3373428) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218177.1 CDS tdcB NC_006905.1 3373449 3374438 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase complement(3373449..3374438) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218178.1 CDS tdcA NC_006905.1 3374536 3375474 R regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA complement(3374536..3375474) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218179.1 CDS SC3192 NC_006905.1 3376015 3376233 R hypothetical protein complement(3376015..3376233) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218180.1 CDS SC3193 NC_006905.1 3376188 3376574 D hypothetical protein 3376188..3376574 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218181.1 CDS garK NC_006905.1 3376593 3377738 R IPR004381: Conserved hypothetical protein 45; glycerate kinase complement(3376593..3377738) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218182.1 CDS garR NC_006905.1 3377836 3378726 R catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase complement(3377836..3378726) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218183.1 CDS garL NC_006905.1 3378752 3379522 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3378752..3379522) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218184.1 CDS gatY NC_006905.1 3381881 3382735 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 3381881..3382735 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218185.1 CDS gatZ NC_006905.1 3382856 3384127 D tagatose 6-phosphate kinase 1 3382856..3384127 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218186.1 CDS ptkA NC_006905.1 3384142 3384606 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 3384142..3384606 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218187.1 CDS ptkB NC_006905.1 3384637 3384921 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 3384637..3384921 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218188.1 CDS ptkC NC_006905.1 3384925 3386298 D IPR001865: Ribosomal protein S2; IPR004703: PTS system Galactitol-specific IIC component; PTS family galactitol-specific enzyme IIC 3384925..3386298 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218189.1 CDS gadD NC_006905.1 3386342 3387385 D Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3386342..3387385 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218190.1 CDS gadR NC_006905.1 3387496 3388269 D IPR001034: Bacterial regulatory protein, DeoR family; IPR001969: Eukaryotic/viral aspartic protease, active site; sugar metabolism transcriptional regulator 3387496..3388269 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218191.1 CDS yraL NC_006905.1 3388427 3389290 R IPR000878: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; IPR008189: Protein of unknown function UPF0011; hypothetical protein complement(3388427..3389290) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218192.1 CDS yraM NC_006905.1 3389354 3391396 D IPR007443: LppC lipoprotein; transglycosylase 3389354..3391396 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218193.2 CDS yraN NC_006905.1 3391354 3391749 D IPR003509: Protein of unknown function UPF0102; hypothetical protein 3391354..3391749 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218194.1 CDS yraO NC_006905.1 3391771 3392361 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; chromosome replication initiator DnaA 3391771..3392361 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218195.1 CDS yraP NC_006905.1 3392371 3392946 D IPR007055: Transport-associated domain; hypothetical protein 3392371..3392946 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218196.1 CDS yraR NC_006905.1 3393013 3393681 R hypothetical protein complement(3393013..3393681) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218197.1 CDS yhbO NC_006905.1 3393779 3394297 D IPR002818: Protein of unknown function ThiJ/PfpI; IPR006286: Intracellular protease PfpI; hypothetical protein 3393779..3394297 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218198.1 CDS yhbP NC_006905.1 3394277 3394720 R hypothetical protein complement(3394277..3394720) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218199.1 CDS yhbQ NC_006905.1 3394713 3395075 D IPR000305: Excinuclease ABC, C subunit, N-terminal; GIY-YIG nuclease superfamily protein 3394713..3395075 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218200.1 CDS yhbS NC_006905.1 3395062 3395565 R IPR000182: GCN5-related N-acetyltransferase; ABC transporter membrane protein complement(3395062..3395565) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218201.1 CDS yhbT NC_006905.1 3395559 3396083 R IPR003033: Sterol-binding; hypothetical protein complement(3395559..3396083) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218202.1 CDS yhbU NC_006905.1 3396300 3397295 D IPR001539: Peptidase U32; protease 3396300..3397295 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218203.1 CDS yhbV NC_006905.1 3397286 3398182 D IPR001539: Peptidase U32; hypothetical protein 3397286..3398182 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218204.1 CDS yhbW NC_006905.1 3398360 3399367 D IPR002103: Bacterial luciferase; hypothetical protein 3398360..3399367 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218205.1 CDS yafK NC_006905.1 3399345 3400064 R inner membrane protein complement(3399345..3400064) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218206.1 CDS SC3219 NC_006905.1 3400223 3400753 D hypothetical protein 3400223..3400753 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218207.1 CDS mtr NC_006905.1 3400814 3402058 R tryptophan transporter of high affinity; tryptophan permease complement(3400814..3402058) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218208.2 CDS deaD NC_006905.1 3402212 3404101 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD complement(3402212..3404101) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218209.1 CDS nlpI NC_006905.1 3404280 3405164 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3404280..3405164) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218210.1 CDS pnp NC_006905.1 3405274 3407439 R IPR000110: Ribosomal protein S1; IPR001247: 3' exoribonuclease; IPR003029: RNA binding S1;IPR004087: KH domain;IPR004088: KH domain, type 1; polynucleotide phosphorylase complement(3405274..3407439) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218211.1 CDS rpsO NC_006905.1 3407651 3407920 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3407651..3407920) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218212.1 CDS truB NC_006905.1 3408071 3409015 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3408071..3409015) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218213.1 CDS rbfA NC_006905.1 3409015 3409416 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3409015..3409416) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218214.1 CDS infB NC_006905.1 3409637 3412315 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3409637..3412315) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218215.1 CDS nusA NC_006905.1 3412340 3413842 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3412340..3413842) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218216.2 CDS yhbC NC_006905.1 3413870 3414322 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3413870..3414322) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218218.2 CDS argG NC_006905.1 3414950 3416293 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3414950..3416293 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218219.2 CDS secG NC_006905.1 3416591 3416923 R IPR004692: Preprotein translocase SecG subunit; preprotein translocase subunit SecG complement(3416591..3416923) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218220.1 CDS glmM NC_006905.1 3417146 3418483 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3417146..3418483) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218221.1 CDS hflB NC_006905.1 3419430 3421373 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease complement(3419430..3421373) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218222.1 CDS rrmJ NC_006905.1 3421468 3422094 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase complement(3421468..3422094) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218223.1 CDS yhbY NC_006905.1 3422182 3422514 D RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3422182..3422514 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218224.1 CDS greA NC_006905.1 3422670 3423146 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(3422670..3423146) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218225.1 CDS dacB NC_006905.1 3423394 3424827 D penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 3423394..3424827 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218226.1 CDS obgE NC_006905.1 3424958 3426130 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3424958..3426130) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218227.1 CDS rhbE NC_006905.1 3426146 3427111 R IPR000620: Protein of unknown function DUF6; hypothetical protein complement(3426146..3427111) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218228.1 CDS rpmA NC_006905.1 3427241 3427498 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3427241..3427498) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218229.1 CDS SC3242 NC_006905.1 3427563 3427880 D hypothetical protein 3427563..3427880 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218230.1 CDS ispB NC_006905.1 3427913 3429058 D IPR000092: Polyprenyl synthetase; octaprenyl diphosphate synthase 3427913..3429058 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218231.1 CDS nlp NC_006905.1 3429291 3429578 D activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3429291..3429578 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218232.1 CDS murA NC_006905.1 3429637 3430896 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3429637..3430896) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218233.1 CDS yrbA NC_006905.1 3430950 3431243 R IPR002634: BolA-like protein; BolA family transcriptional regulator complement(3430950..3431243) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218234.1 CDS yrbB NC_006905.1 3431392 3431688 R IPR002645: Sulfate transporter/antisigma-factor antagonist STAS; STAS domain-containing protein complement(3431392..3431688) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218235.1 CDS yrbC NC_006905.1 3431688 3432323 R IPR008869: Toluene tolerance; ABC transporter ATP-binding protein complement(3431688..3432323) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218236.1 CDS yrbD NC_006905.1 3432342 3432893 R IPR003399: Mce4/Rv3499c/MTV023.06c protein; ABC transporter substrate-binding protein complement(3432342..3432893) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218237.1 CDS yrbE NC_006905.1 3432898 3433680 R IPR003453: Protein of unknown function DUF140; ABC transporter membrane protein complement(3432898..3433680) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218238.1 CDS yrbF NC_006905.1 3433688 3434500 R ATP-binding subunit of a ABC toluene efflux transporter; ABC transporter ATP-binding protein complement(3433688..3434500) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218239.1 CDS yrbG NC_006905.1 3434713 3435690 D YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 3434713..3435690 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218240.1 CDS yrbH NC_006905.1 3435680 3436690 D IPR000644: CBS domain; IPR001347: Sugar isomerase (SIS); IPR004800: KpsF/GutQ family protein; D-arabinose 5-phosphate isomerase 3435680..3436690 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218241.1 CDS yrbI NC_006905.1 3436711 3437277 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3436711..3437277 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218242.1 CDS yrbK NC_006905.1 3437274 3437849 D hypothetical protein 3437274..3437849 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218243.1 CDS yhbN NC_006905.1 3437797 3438372 D LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide transport periplasmic protein LptA 3437797..3438372 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218244.1 CDS yhbG NC_006905.1 3438379 3439104 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; ABC transporter ATP-binding protein 3438379..3439104 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218245.1 CDS rpoN NC_006905.1 3439152 3440585 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3439152..3440585 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218246.1 CDS yhbH NC_006905.1 3440608 3440895 D YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; sigma(54) modulation protein 3440608..3440895 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218247.1 CDS ptsN NC_006905.1 3441013 3441504 D IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; IPR006320: PTS IIA-like nitrogen-regulatory protein PtsN; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3441013..3441504 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218248.1 CDS yhbJ NC_006905.1 3441550 3442404 D IPR005337: Uncharacterised P-loop ATPase family UPF0042; hypothetical protein 3441550..3442404 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218249.1 CDS ptsO NC_006905.1 3442401 3442673 D IPR000032: Phosphocarrier HPr protein; IPR001020: HPr histidine phosphorylation site; IPR002114: HPr serine phosphorylation site; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3442401..3442673 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218250.1 CDS yrbL NC_006905.1 3442922 3443554 D hypothetical protein 3442922..3443554 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218251.1 CDS mtgA NC_006905.1 3443629 3444357 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(3443629..3444357) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218252.1 CDS yhbL NC_006905.1 3444354 3445007 R IPR002818: Protein of unknown function ThiJ/PfpI; isoprenoid biosynthesis protein with amidotransferase-like domain complement(3444354..3445007) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218253.1 CDS arcB NC_006905.1 3445234 3447570 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB complement(3445234..3447570) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218254.1 CDS yhcC NC_006905.1 3447664 3448593 R IPR005911: Conserved hypothetical protein 1212; IPR006638: Elongator protein 3/MiaB/NifB; IPR007197: Radical SAM; hypothetical protein complement(3447664..3448593) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218255.1 CDS gltB NC_006905.1 3449265 3453725 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3449265..3453725 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218256.1 CDS gltD NC_006905.1 3453735 3455153 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3453735..3455153 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218257.1 CDS yhcG NC_006905.1 3455360 3456463 D hypothetical protein 3455360..3456463 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218258.1 CDS codB NC_006905.1 3456579 3457832 D IPR001248: Permease for cytosine/purines, uracil, thiamine, allantoin; cytosine permease 3456579..3457832 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218259.1 CDS codA NC_006905.1 3457819 3459099 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3457819..3459099 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218260.1 CDS yhcH NC_006905.1 3459182 3459649 R IPR004375: Conserved hypothetical protein 22; hypothetical protein complement(3459182..3459649) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218261.1 CDS nanK NC_006905.1 3459646 3460521 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase complement(3459646..3460521) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218262.1 CDS nanE NC_006905.1 3460518 3461207 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(3460518..3461207) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218263.1 CDS nanT NC_006905.1 3461254 3462744 R IPR004742: Sialic acid transporter; IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; sialic acid transporter complement(3461254..3462744) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218264.1 CDS nanA NC_006905.1 3462860 3463753 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(3462860..3463753) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218265.1 CDS yhcK NC_006905.1 3463888 3464679 R Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR complement(3463888..3464679) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218266.1 CDS sspB NC_006905.1 3464788 3465288 R IPR007481: Stringent starvation protein B; ClpXP protease specificity-enhancing factor complement(3464788..3465288) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218267.1 CDS sspA NC_006905.1 3465294 3465932 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3465294..3465932) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218268.1 CDS SC3281 NC_006905.1 3466000 3466947 R hypothetical protein complement(3466000..3466947) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218269.1 CDS rpsI NC_006905.1 3467147 3467539 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3467147..3467539) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218270.2 CDS rplM NC_006905.1 3467555 3467983 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3467555..3467983) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218271.1 CDS yhcM NC_006905.1 3468286 3469410 R IPR005654: AFG1-like ATPase; ATPase complement(3468286..3469410) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218272.1 CDS yhcB NC_006905.1 3469597 3470001 D cytochrome d ubiquinol oxidase subunit III 3469597..3470001 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218273.1 CDS degQ NC_006905.1 3470158 3471525 D IPR001254: Peptidase S1, chymotrypsin family; IPR001478: PDZ/DHR/GLGF domain; IPR001940: Peptidase S1C, HtrA/DegQ protease; serine endoprotease 3470158..3471525 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218274.1 CDS degS NC_006905.1 3471618 3472688 D IPR001254: Peptidase S1, chymotrypsin family; IPR001478: PDZ/DHR/GLGF domain; IPR001940: Peptidase S1C, HtrA/DegQ protease; serine endoprotease 3471618..3472688 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218275.1 CDS SC3288 NC_006905.1 3472722 3473453 R inner membrane protein complement(3472722..3473453) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218276.1 CDS oadB NC_006905.1 3473473 3474774 R IPR005661: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; oxalacetate decarboxylase subunit beta complement(3473473..3474774) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218277.1 CDS oadA NC_006905.1 3474787 3476562 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(3474787..3476562) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218278.1 CDS oadG NC_006905.1 3476578 3476820 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(3476578..3476820) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218279.1 CDS ttdB NC_006905.1 3476977 3477594 R Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta complement(3476977..3477594) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218280.1 CDS ttdA NC_006905.1 3477594 3478493 R Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha complement(3477594..3478493) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218281.1 CDS SC3294 NC_006905.1 3478526 3479866 R IPR001898: Sodium/sulphate symporter; cation transporter complement(3478526..3479866) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218282.1 CDS SC3295 NC_006905.1 3480005 3480670 R IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator complement(3480005..3480670) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218283.1 CDS SC3296 NC_006905.1 3480657 3481286 R IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator complement(3480657..3481286) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218284.1 CDS mdh NC_006905.1 3481406 3482344 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(3481406..3482344) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218285.1 CDS argR NC_006905.1 3482759 3483229 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 3482759..3483229 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218286.1 CDS yhcN NC_006905.1 3483594 3483857 D outer membrane protein 3483594..3483857 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218287.1 CDS SC3300 NC_006905.1 3483961 3484227 D hypothetical protein 3483961..3484227 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218288.1 CDS yhcO NC_006905.1 3484287 3484559 R hypothetical protein complement(3484287..3484559) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218289.1 CDS yhcP NC_006905.1 3484731 3486698 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB complement(3484731..3486698) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218290.1 CDS yhcQ NC_006905.1 3486704 3487636 R with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA complement(3486704..3487636) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218291.1 CDS yhcR NC_006905.1 3487644 3487847 R membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein complement(3487644..3487847) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218292.1 CDS yhcS NC_006905.1 3488029 3488958 D IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; DNA-binding transcriptional regulator 3488029..3488958 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218293.2 CDS tldD NC_006905.1 3489081 3490526 R responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD complement(3489081..3490526) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218294.1 CDS yhdP NC_006905.1 3490671 3494471 R hypothetical protein complement(3490671..3494471) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218295.1 CDS cafA NC_006905.1 3494582 3496051 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(3494582..3496051) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218296.1 CDS maf NC_006905.1 3496041 3496634 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(3496041..3496634) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218297.1 CDS mreD NC_006905.1 3496643 3497134 R part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD complement(3496643..3497134) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218298.1 CDS mreC NC_006905.1 3497134 3498186 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3497134..3498186) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218299.2 CDS mreB NC_006905.1 3498251 3499294 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3498251..3499294) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218300.1 CDS yhdA NC_006905.1 3499602 3501542 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(3499602..3501542) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218301.1 CDS yhdH NC_006905.1 3501746 3502720 D IPR000566: Lipocalin-related protein and Bos/Can/Equ allergen; IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR002085: Zinc-containing alcohol dehydrogenase superfamily; oxidoreductase 3501746..3502720 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218302.1 CDS yedY NC_006905.1 3502832 3503836 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 3502832..3503836 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218303.1 CDS yedZ NC_006905.1 3503837 3504436 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 3503837..3504436 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218304.1 CDS accB NC_006905.1 3504829 3505299 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3504829..3505299 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218305.1 CDS accC NC_006905.1 3505310 3506659 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3505310..3506659 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218306.1 CDS yhdT NC_006905.1 3506768 3507010 D hypothetical protein 3506768..3507010 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218307.1 CDS panF NC_006905.1 3507000 3508451 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3507000..3508451 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218308.1 CDS prmA NC_006905.1 3508463 3509344 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3508463..3509344 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218309.1 CDS yhdG NC_006905.1 3510006 3510971 D IPR001269: Protein of unknown function UPF0034; IPR003009: FMN/related compound-binding core; IPR004652: TIM-barrel protein nifR3; tRNA-dihydrouridine synthase B 3510006..3510971 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218310.1 CDS fis NC_006905.1 3510997 3511293 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; Fis family transcriptional regulator 3510997..3511293 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218311.1 CDS yhdJ NC_006905.1 3511373 3512263 D IPR001091: Site-specific DNA-methyltransferase (cytosine-N4-specific); IPR002052: N-6 Adenine-specific DNA methylase; IPR002295: N6 adenine-specific DNA methyltransferase, D21 class;IPR002941: DNA methylase N-4/N-6; methyltransferase 3511373..3512263 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218312.1 CDS yhdU NC_006905.1 3512319 3512510 D hypothetical protein 3512319..3512510 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218313.1 CDS envR NC_006905.1 3514763 3515425 R IPR001647: Bacterial regulatory protein TetR, HTH motif; DNA-binding transcriptional regulator EnvR complement(3514763..3515425) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218314.1 CDS SC3327 NC_006905.1 3515498 3515656 D hypothetical protein 3515498..3515656 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218315.1 CDS acrF NC_006905.1 3517007 3520120 D IPR001036: Acriflavin resistance protein; IPR004764: Hydrophobe/amphiphile efflux-1 HAE1; multidrug transporter acriflavin resistance protein F 3517007..3520120 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218316.1 CDS SC3329 NC_006905.1 3520216 3520380 R hypothetical protein complement(3520216..3520380) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218317.1 CDS yhdV NC_006905.1 3520356 3520577 D outer membrane lipoprotein 3520356..3520577 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218321.1 CDS SC3334 NC_006905.1 3526627 3526749 D hypothetical protein 3526627..3526749 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218322.1 CDS yrdA NC_006905.1 3526924 3527478 D IPR001451: Bacterial transferase hexapeptide repeat; ferripyochelin binding protein 3526924..3527478 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218323.1 CDS yrdB NC_006905.1 3527454 3527711 R hypothetical protein complement(3527454..3527711) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218324.1 CDS aroE NC_006905.1 3527708 3528526 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(3527708..3528526) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218325.1 CDS yrdC NC_006905.1 3528531 3529133 R RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; ribosome maturation factor complement(3528531..3529133) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218326.1 CDS yrdD NC_006905.1 3529108 3529650 R IPR000380: DNA topoisomerase I; hypothetical protein complement(3529108..3529650) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218327.1 CDS smg NC_006905.1 3529677 3530150 R IPR007456: Protein of unknown function DUF494; hypothetical protein complement(3529677..3530150) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218328.1 CDS smf NC_006905.1 3530122 3531246 R IPR003488: SMF protein; DNA protecting protein DprA complement(3530122..3531246) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218329.1 CDS def NC_006905.1 3531378 3531887 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3531378..3531887 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218330.1 CDS fmt NC_006905.1 3531903 3532850 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3531903..3532850 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218331.1 CDS sun NC_006905.1 3532902 3534191 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase GidB 3532902..3534191 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218332.1 CDS trkA NC_006905.1 3534213 3535589 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3534213..3535589 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218333.1 CDS mscL NC_006905.1 3535730 3536143 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3535730..3536143 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218334.1 CDS zntR NC_006905.1 3536406 3536831 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator complement(3536406..3536831) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218335.1 CDS yhdN NC_006905.1 3536842 3537210 R hypothetical protein complement(3536842..3537210) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218336.1 CDS rplQ NC_006905.1 3537318 3537701 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3537318..3537701) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218337.1 CDS rpoA NC_006905.1 3537742 3538731 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3537742..3538731) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218338.1 CDS rpsD NC_006905.1 3538757 3539377 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(3538757..3539377) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218339.1 CDS rpsK NC_006905.1 3539411 3539800 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(3539411..3539800) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218340.1 CDS rpmJ NC_006905.1 3540322 3540438 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(3540322..3540438) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218341.1 CDS secY NC_006905.1 3540470 3541801 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3540470..3541801) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218342.1 CDS rplO NC_006905.1 3541809 3542243 R late assembly protein; 50S ribosomal protein L15 complement(3541809..3542243) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218343.1 CDS rpmD NC_006905.1 3542247 3542426 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3542247..3542426) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218344.1 CDS rpsE NC_006905.1 3542430 3542933 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3542430..3542933) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218345.1 CDS rplR NC_006905.1 3542948 3543301 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3542948..3543301) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218346.1 CDS rplF NC_006905.1 3543311 3543844 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(3543311..3543844) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218347.1 CDS rpsH NC_006905.1 3543857 3544249 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3543857..3544249) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218348.1 CDS rpsN NC_006905.1 3544283 3544588 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(3544283..3544588) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218349.1 CDS rplE NC_006905.1 3544603 3545142 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3544603..3545142) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218350.1 CDS rplX NC_006905.1 3545157 3545471 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3545157..3545471) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218351.1 CDS rplN NC_006905.1 3545482 3545853 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3545482..3545853) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218352.1 CDS rpsQ NC_006905.1 3546017 3546271 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3546017..3546271) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218353.1 CDS rpmC NC_006905.1 3546271 3546462 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3546271..3546462) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218354.1 CDS rplP NC_006905.1 3546462 3546872 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3546462..3546872) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218355.1 CDS rpsC NC_006905.1 3546885 3547586 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3546885..3547586) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_004770514.1 CDS SC3368a NC_006905.1 3547604 3547936 R 50S ribosomal protein L22 complement(3547604..3547936) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218357.1 CDS rpsS NC_006905.1 3547951 3548229 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3547951..3548229) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218358.1 CDS rplB NC_006905.1 3548246 3549067 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(3548246..3549067) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218359.1 CDS rplW NC_006905.1 3549085 3549387 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3549085..3549387) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218360.1 CDS rplD NC_006905.1 3549384 3549989 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3549384..3549989) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218361.1 CDS rplC NC_006905.1 3550000 3550629 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(3550000..3550629) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218362.1 CDS rpsJ NC_006905.1 3550662 3550973 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(3550662..3550973) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218363.1 CDS hopD NC_006905.1 3551227 3551820 D IPR000045: Prepilin cysteine protease (C20), type IV; leader peptidase HopD 3551227..3551820 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218364.1 CDS bfr NC_006905.1 3551817 3552293 R iron storage protein; bacterioferritin complement(3551817..3552293) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218365.1 CDS bfd NC_006905.1 3552366 3552560 R IPR007419: BFD-like [2Fe-2S]-binding domain; bacterioferritin-associated ferredoxin complement(3552366..3552560) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218366.2 CDS tuf NC_006905.1 3552745 3553929 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3552745..3553929) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218367.1 CDS fusA NC_006905.1 3554001 3556115 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3554001..3556115) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218368.1 CDS rpsG NC_006905.1 3556212 3556682 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3556212..3556682) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218369.2 CDS rpsL NC_006905.1 3556778 3557152 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(3556778..3557152) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218370.1 CDS yheL NC_006905.1 3557278 3557565 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB complement(3557278..3557565) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218371.1 CDS yheM NC_006905.1 3557573 3557929 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC complement(3557573..3557929) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218372.1 CDS yheN NC_006905.1 3557929 3558315 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(3557929..3558315) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218373.1 CDS yheO NC_006905.1 3558315 3559049 R hypothetical protein complement(3558315..3559049) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218374.1 CDS fkpA NC_006905.1 3559314 3560132 R rotamase; FKBP-type peptidylprolyl isomerase complement(3559314..3560132) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218375.1 CDS slyX NC_006905.1 3560352 3560570 D IPR007236: SlyX; hypothetical protein 3560352..3560570 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218376.1 CDS slyD NC_006905.1 3560765 3561355 R rotamase; FKBP-type peptidylprolyl isomerase complement(3560765..3561355) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218377.1 CDS yheV NC_006905.1 3561450 3561650 R hypothetical protein complement(3561450..3561650) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218378.1 CDS kefB NC_006905.1 3561660 3563465 R involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB complement(3561660..3563465) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218379.1 CDS yheR NC_006905.1 3563465 3564016 R required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG complement(3563465..3564016) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218380.1 CDS yheS NC_006905.1 3564272 3566179 D IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; ABC transporter ATP-binding protein 3564272..3566179 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218381.1 CDS mauR NC_006905.1 3566342 3566563 D ABC transporter ATPase 3566342..3566563 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218382.1 CDS ydhR NC_006905.1 3566565 3566876 R hypothetical protein complement(3566565..3566876) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218383.1 CDS yheT NC_006905.1 3567064 3568140 D IPR000073: Alpha/beta hydrolase fold; IPR000379: Esterase/lipase/thioesterase; IPR000952: Protein of unknown function UPF0017; hydrolase 3567064..3568140 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218384.1 CDS yheU NC_006905.1 3568137 3568355 D hypothetical protein 3568137..3568355 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218385.1 CDS prkB NC_006905.1 3568407 3569276 D IPR006082: Phosphoribulokinase; IPR006083: Phosphoribulokinase/uridine kinase; phosphoribulokinase 3568407..3569276 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218386.1 CDS yhfA NC_006905.1 3569372 3569776 R IPR003718: OsmC-like protein; hypothetical protein complement(3569372..3569776) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218387.1 CDS crp NC_006905.1 3570084 3570716 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3570084..3570716 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218388.1 CDS yhfK NC_006905.1 3570753 3572852 D inner membrane protein 3570753..3572852 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218389.1 CDS argD NC_006905.1 3572895 3574112 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(3572895..3574112) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218390.1 CDS pabA NC_006905.1 3574198 3574761 R aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II complement(3574198..3574761) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218391.1 CDS fic NC_006905.1 3574793 3575395 R IPR003812: Filamentation induced by cAMP protein Fic; cell filamentation protein Fic complement(3574793..3575395) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218392.1 CDS ppiA NC_006905.1 3575661 3576233 R IPR002130: Peptidyl-prolyl cis-trans isomerase, cyclophilin type; peptidyl-prolyl cis-trans isomerase A complement(3575661..3576233) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218393.1 CDS yhfC NC_006905.1 3576510 3577691 D IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; hypothetical protein 3576510..3577691 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218394.1 CDS SC3407 NC_006905.1 3577824 3578000 R hypothetical protein complement(3577824..3578000) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218395.1 CDS nirB NC_006905.1 3577953 3580496 D IPR000103: Pyridine nucleotide-disulphide oxidoreductase, class-II; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I; IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;IPR005117: Nitrite/sulfite reductase ferredoxin-like half domain;IPR006066: Nitrite and sulfite reductase iron-sulfur/siroheme-binding site;IPR006067: Nitrite and sulphite reductase 4Fe-4S domain;IPR007419: BFD-like [2Fe-2S]-binding domain; nitrite reductase, large subunit 3577953..3580496 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218396.1 CDS nirD NC_006905.1 3580493 3580819 D involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 3580493..3580819 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218397.1 CDS nirC NC_006905.1 3581003 3581812 D member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3581003..3581812 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218398.1 CDS cysG NC_006905.1 3581824 3583197 D multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; siroheme synthase 3581824..3583197 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218399.1 CDS yhfL NC_006905.1 3589344 3589592 D outer membrane lipoprotein 3589344..3589592 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218400.1 CDS trpS NC_006905.1 3589737 3590741 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(3589737..3590741) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218401.1 CDS gph NC_006905.1 3590734 3591492 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(3590734..3591492) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218402.1 CDS rpe NC_006905.1 3591485 3592162 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(3591485..3592162) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218403.1 CDS dam NC_006905.1 3592180 3593016 R IPR002052: N-6 Adenine-specific DNA methylase; IPR002294: N6 adenine-specific DNA methyltransferase, D12 class; DNA adenine methylase complement(3592180..3593016) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218404.1 CDS damX NC_006905.1 3593197 3594474 R IPR001950: Translation initiation factor SUI1; hypothetical protein complement(3593197..3594474) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218405.1 CDS aroB NC_006905.1 3594572 3595660 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(3594572..3595660) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218406.1 CDS aroK NC_006905.1 3595717 3596238 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(3595717..3596238) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218407.1 CDS hofQ NC_006905.1 3596703 3597941 R outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; porin complement(3596703..3597941) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218408.1 CDS yrfA NC_006905.1 3597856 3598257 R hypothetical protein complement(3597856..3598257) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218409.1 CDS yrfB NC_006905.1 3598247 3598690 R hypothetical protein complement(3598247..3598690) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218410.1 CDS yrfC NC_006905.1 3598704 3599243 R IPR007813: Fimbrial assembly; hypothetical protein complement(3598704..3599243) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218411.1 CDS yrfD NC_006905.1 3599243 3600022 R hypothetical protein complement(3599243..3600022) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218412.2 CDS mrcA NC_006905.1 3600143 3602695 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3600143..3602695 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218413.2 CDS nudE NC_006905.1 3602791 3603354 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(3602791..3603354) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218414.1 CDS yrfF NC_006905.1 3603677 3605809 D hypothetical protein 3603677..3605809 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218415.1 CDS yrfG NC_006905.1 3605874 3606542 D IPR005833: Haloacid dehalogenase/epoxide hydrolase; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006402: HAD-superfamily hydrolase, subfamily IA, variant 3; hydrolase 3605874..3606542 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218416.1 CDS yrfH NC_006905.1 3606553 3606954 D IPR002942: RNA-binding S4; ribosome-associated heat shock protein Hsp15 3606553..3606954 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218417.2 CDS hslO NC_006905.1 3606979 3607857 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 3606979..3607857 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218418.1 CDS yhgE NC_006905.1 3607968 3609677 R hypothetical protein complement(3607968..3609677) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218419.1 CDS pckA NC_006905.1 3610057 3611676 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3610057..3611676 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218420.1 CDS envZ NC_006905.1 3611751 3613103 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(3611751..3613103) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218421.1 CDS ompR NC_006905.1 3613100 3613834 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(3613100..3613834) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218422.1 CDS greB NC_006905.1 3614045 3614518 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3614045..3614518 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218423.1 CDS yhgF NC_006905.1 3614617 3616947 D IPR003029: RNA binding S1; IPR006641: Ribonuclease RNase H fold containing; RNase R 3614617..3616947 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218424.1 CDS feoA NC_006905.1 3617401 3617628 D IPR007167: FeoA; ferrous iron transport protein A 3617401..3617628 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218425.1 CDS feoB NC_006905.1 3617647 3619965 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3617647..3619965 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218426.1 CDS yhgG NC_006905.1 3619978 3620214 D hypothetical protein 3619978..3620214 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218427.1 CDS yfcI NC_006905.1 3620460 3621374 D IPR006842: transposase, YhgA-like; hypothetical protein 3620460..3621374 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218428.1 CDS bioH NC_006905.1 3621410 3622180 R Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH complement(3621410..3622180) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218429.1 CDS yhgH NC_006905.1 3622218 3622901 D involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3622218..3622901 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218430.1 CDS yhgI NC_006905.1 3622960 3623535 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 3622960..3623535 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218431.1 CDS gntT NC_006905.1 3623912 3625228 D IPR003474: Gluconate transporter; GntP family, high-affinity gluconate permease in GNT I system 3623912..3625228 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218432.1 CDS malQ NC_006905.1 3625347 3627425 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(3625347..3627425) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218433.1 CDS malP NC_006905.1 3627435 3629828 R IPR000811: Glycosyl transferase, family 35; maltodextrin phosphorylase complement(3627435..3629828) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218434.1 CDS malT NC_006905.1 3630422 3633127 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3630422..3633127 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218435.1 CDS SC3448 NC_006905.1 3633269 3633829 R hypothetical protein complement(3633269..3633829) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218436.1 CDS rtcA NC_006905.1 3633826 3634782 R catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase complement(3633826..3634782) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218437.1 CDS rtcB NC_006905.1 3634864 3636081 R IPR001233: Protein of unknown function UPF0027; hypothetical protein complement(3634864..3636081) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218438.1 CDS SC3451 NC_006905.1 3636425 3637978 R IPR003439: ABC transporter; IPR008858: TROVE; ribonucleoprotein related-protein complement(3636425..3637978) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218439.1 CDS SC3452 NC_006905.1 3637971 3638123 R hypothetical protein complement(3637971..3638123) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218440.1 CDS rtcR NC_006905.1 3638168 3639751 D IPR002078: Sigma-54 factor interaction domain; IPR003593: AAA ATPase; sigma N (sigma 54)-dependent regulator of rtcBA expression (EBP family) 3638168..3639751 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218441.1 CDS glpR NC_006905.1 3639748 3640506 R represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR complement(3639748..3640506) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218442.1 CDS glpG NC_006905.1 3640600 3641430 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG complement(3640600..3641430) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218443.1 CDS glpE NC_006905.1 3641506 3641832 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase complement(3641506..3641832) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218444.1 CDS glpD NC_006905.1 3642031 3643539 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3642031..3643539 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218445.1 CDS SC3458 NC_006905.1 3643586 3644131 R hypothetical protein complement(3643586..3644131) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218446.1 CDS SC3459 NC_006905.1 3644141 3645694 R phosphate-binding protein complement(3644141..3645694) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218447.1 CDS gldA NC_006905.1 3645795 3646904 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(3645795..3646904) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218448.1 CDS tub NC_006905.1 3647244 3648578 D IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; hypothetical protein 3647244..3648578 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218449.1 CDS yagE NC_006905.1 3650334 3651239 D IPR002220: Dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 3650334..3651239 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218450.1 CDS yfaX NC_006905.1 3651283 3652038 R IPR005471: Bacterial regulatory proteins, IclR family; IPR005473: Bacterial transcription regulator, ICLR-like family; transcriptional regulator complement(3651283..3652038) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218451.1 CDS glgP NC_006905.1 3652216 3654663 R IPR000811: Glycosyl transferase, family 35; glycogen phosphorylase complement(3652216..3654663) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218452.1 CDS glgA NC_006905.1 3654683 3656116 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(3654683..3656116) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218453.1 CDS glgC NC_006905.1 3656116 3657411 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3656116..3657411) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218454.1 CDS glgX NC_006905.1 3657426 3659402 R catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching protein complement(3657426..3659402) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218455.1 CDS glgB NC_006905.1 3659399 3661585 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(3659399..3661585) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218456.1 CDS asd NC_006905.1 3661932 3663038 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(3661932..3663038) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218457.1 CDS SC3470 NC_006905.1 3663089 3663232 D hypothetical protein 3663089..3663232 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218458.1 CDS gntU NC_006905.1 3663462 3664802 R IPR003474: Gluconate transporter; low affinity gluconate transporter complement(3663462..3664802) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218459.2 CDS gntK NC_006905.1 3664799 3665332 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase complement(3664799..3665332) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218460.1 CDS gntR NC_006905.1 3665471 3666532 R IPR000843: Bacterial regulatory protein LacI, HTH motif; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator complement(3665471..3666532) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218461.1 CDS yhhW NC_006905.1 3666596 3667291 R IPR003829: Pirin, N-terminal; IPR007113: Cupin domain; hypothetical protein complement(3666596..3667291) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218462.1 CDS yhhX NC_006905.1 3667415 3668452 R IPR000683: Oxidoreductase, N-terminal; IPR004104: Oxidoreductase, C-terminal; dehydrogenase complement(3667415..3668452) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218463.1 CDS yhhY NC_006905.1 3668920 3669408 D YhhY; regulated by the fur regulator; unknown function; acetyltransferase YhhY 3668920..3669408 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218464.1 CDS rbsK NC_006905.1 3669672 3670886 D IPR001034: Bacterial regulatory protein, DeoR family; IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; sugar metabolism transcriptional regulator 3669672..3670886 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218465.1 CDS SC3478 NC_006905.1 3670902 3671663 D hypothetical protein 3670902..3671663 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218466.1 CDS SC3479 NC_006905.1 3671717 3672688 D inner membrane protein 3671717..3672688 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218467.1 CDS ggt NC_006905.1 3673764 3675506 R periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase complement(3673764..3675506) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218468.1 CDS yhhA NC_006905.1 3675632 3676048 D hypothetical protein 3675632..3676048 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218469.1 CDS ugpQ NC_006905.1 3676061 3676801 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase complement(3676061..3676801) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218470.1 CDS ugpC NC_006905.1 3676798 3677868 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(3676798..3677868) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218471.1 CDS ugpE NC_006905.1 3677871 3678716 R with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein complement(3677871..3678716) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218472.1 CDS ugpA NC_006905.1 3678713 3679600 R with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease complement(3678713..3679600) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218473.1 CDS ugpB NC_006905.1 3679705 3681021 R with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein complement(3679705..3681021) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218474.1 CDS doc NC_006905.1 3681280 3681648 R similar to death -on-curing protein of phage P; IPR006440: Death-on-curing family protein; hypothetical protein complement(3681280..3681648) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218475.1 CDS yhhV NC_006905.1 3681645 3681866 R IPR003756: Protein of unknown function DUF172; IPR006442: Prevent-host-death family protein; hypothetical protein complement(3681645..3681866) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218476.1 CDS livF NC_006905.1 3681997 3682710 R with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(3681997..3682710) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218477.1 CDS livG NC_006905.1 3682712 3683479 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(3682712..3683479) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218478.1 CDS livM NC_006905.1 3683476 3684753 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(3683476..3684753) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218479.1 CDS livH NC_006905.1 3684750 3685676 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH complement(3684750..3685676) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218480.1 CDS yhhK NC_006905.1 3687267 3687650 D IPR000182: GCN5-related N-acetyltransferase; hypothetical protein 3687267..3687650 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218481.1 CDS SC3494 NC_006905.1 3687647 3688165 R IPR000182: GCN5-related N-acetyltransferase; hypothetical protein complement(3687647..3688165) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218482.1 CDS SC3495 NC_006905.1 3688169 3688438 R hypothetical protein complement(3688169..3688438) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218483.1 CDS livJ NC_006905.1 3688616 3689776 R IPR000709: Leu/Ile/Val-binding protein family; IPR001828: Extracellular ligand-binding receptor; Leu/Ile/Val/Thr-binding protein complement(3688616..3689776) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218484.1 CDS rpoH NC_006905.1 3690041 3690895 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(3690041..3690895) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218485.1 CDS ftsX NC_006905.1 3691141 3692196 R ABC transporter membrane protein; cell division protein FtsX complement(3691141..3692196) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218486.1 CDS ftsE NC_006905.1 3692189 3692785 R ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE complement(3692189..3692785) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218487.1 CDS ftsY NC_006905.1 3692860 3694335 R signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY complement(3692860..3694335) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218488.1 CDS rsmD NC_006905.1 3694461 3695057 D catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3694461..3695057 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218489.1 CDS yhhL NC_006905.1 3695047 3695316 D hypothetical protein 3695047..3695316 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218490.1 CDS yhhM NC_006905.1 3695338 3695709 R hypothetical protein complement(3695338..3695709) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218491.1 CDS yhhN NC_006905.1 3695851 3696477 D hypothetical protein 3695851..3696477 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218492.1 CDS zntA NC_006905.1 3696558 3698756 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 3696558..3698756 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218493.1 CDS tcp NC_006905.1 3698956 3700599 D IPR003122: Ligand binding Tar; IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer;IPR004090: Methyl-accepting chemotaxis protein;IPR004091: Aspartate chemoreceptor protein; methyl-accepting transmembrane citrate/phenol chemoreceptor 3698956..3700599 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218494.2 CDS yhhP NC_006905.1 3700623 3700868 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(3700623..3700868) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218495.1 CDS yhhQ NC_006905.1 3701038 3701703 D IPR003744: Protein of unknown function DUF165; hypothetical protein 3701038..3701703 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218496.1 CDS dcrB NC_006905.1 3701776 3702333 D hypothetical protein 3701776..3702333 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218497.2 CDS yhhS NC_006905.1 3702337 3703554 R IPR007114: Major facilitator superfamily; major facilitator superfamily transporter complement(3702337..3703554) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218498.1 CDS yhhT NC_006905.1 3703686 3704735 D IPR002549: Protein of unknown function UPF0118; PerM family permease 3703686..3704735 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218499.1 CDS acpT NC_006905.1 3704787 3705365 D IPR008278: 4'-phosphopantetheinyl transferase; holo-(acyl carrier protein) synthase 2 3704787..3705365 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218500.1 CDS nikR NC_006905.1 3705421 3705858 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3705421..3705858 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218501.1 CDS yhhJ NC_006905.1 3705961 3707085 R IPR000412: ABC transporter family 2; ABC transporter ATP-binding protein complement(3705961..3707085) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218502.1 CDS yhiH NC_006905.1 3707085 3709826 R IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; mtultidrug ABC transporter permease/ATPase complement(3707085..3709826) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218503.1 CDS yhiI NC_006905.1 3709883 3710815 R IPR003997: Gram-negative bacterial RTX secretion protein D; IPR006143: Secretion protein HlyD; hypothetical protein complement(3709883..3710815) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218504.1 CDS yhiN NC_006905.1 3711196 3712392 R IPR000205: NAD-binding site; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I; IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;IPR004792: HI0933-like protein; hypothetical protein complement(3711196..3712392) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218505.1 CDS pitA NC_006905.1 3712623 3714119 D IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR001204: Phosphate transporter; PiT family, low-affinity phosphate transporter 3712623..3714119 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218506.1 CDS uspB NC_006905.1 3714260 3714595 R ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB complement(3714260..3714595) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218507.1 CDS uspA NC_006905.1 3714983 3715417 D IPR006016: Usp domain; universal stress protein A 3714983..3715417 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218508.1 CDS yhiP NC_006905.1 3715742 3717214 D member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3715742..3717214 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218509.1 CDS yhiQ NC_006905.1 3717306 3718064 R predicted SAM-dependent methyltransferase; methyltransferase complement(3717306..3718064) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218510.1 CDS opdA NC_006905.1 3718071 3720113 R IPR001567: Peptidase M3; IPR006025: Neutral zinc metallopeptidases, zinc-binding site; oligopeptidase A complement(3718071..3720113) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218511.1 CDS SC3524 NC_006905.1 3720295 3721566 R IPR000326: PA-phosphatase related phosphoesterase; IPR001011: Bacterial acid phosphatase, class A; phosphatase complement(3720295..3721566) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218512.1 CDS yhiR NC_006905.1 3721777 3722619 D IPR002052: N-6 Adenine-specific DNA methylase; IPR007473: Protein of unknown function DUF519; hypothetical protein 3721777..3722619 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218513.1 CDS gor NC_006905.1 3722724 3724076 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3722724..3724076 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218514.1 CDS csbX NC_006905.1 3724176 3725291 R IPR007114: Major facilitator superfamily; alpha-ketoglutarate permease complement(3724176..3725291) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218515.1 CDS SC3528 NC_006905.1 3725264 3725428 R alpha-ketoglutarate permease complement(3725264..3725428) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218516.1 CDS SC3529 NC_006905.1 3725471 3726424 R hypothetical protein complement(3725471..3726424) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218517.1 CDS rpiR NC_006905.1 3726653 3727534 D IPR000281: Helix-turn-helix protein RpiR; IPR001347: Sugar isomerase (SIS); protein rpiR 3726653..3727534 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218518.1 CDS rbsK NC_006905.1 3727648 3728466 D IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; ribokinase 3727648..3728466 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218519.1 CDS aspG NC_006905.1 3728555 3729598 R IPR004550: L-asparaginase, type II; IPR006034: Asparaginase/glutaminase; L-asparaginase complement(3728555..3729598) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218520.1 CDS dcuB NC_006905.1 3729657 3730976 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(3729657..3730976) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218521.1 CDS yurL NC_006905.1 3731030 3731875 R IPR002173: Carbohydrate kinase, PfkB; ribokinase family sugar kinase complement(3731030..3731875) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218522.1 CDS psi NC_006905.1 3731939 3732913 R IPR001347: Sugar isomerase (SIS); phosphosugar isomerase complement(3731939..3732913) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218523.1 CDS yurK NC_006905.1 3733092 3733811 R IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator complement(3733092..3733811) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218524.1 CDS treF NC_006905.1 3734137 3735786 D cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3734137..3735786 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218525.1 CDS SC3538 NC_006905.1 3735799 3737388 R hypothetical protein complement(3735799..3737388) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218526.1 CDS SC3539 NC_006905.1 3737669 3738025 D phage endolysin 3737669..3738025 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218527.1 CDS yhjB NC_006905.1 3738031 3738588 R IPR000792: Bacterial regulatory protein, LuxR family; LuxR family transcriptional regulator complement(3738031..3738588) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218528.1 CDS TnpR NC_006905.1 3738634 3739842 R IPR002559: Transposase, IS4; transposase of Tn10 complement(3738634..3739842) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218529.1 CDS yhjD NC_006905.1 3741574 3742602 D IPR004664: Ribonuclease BN; IPR005274: Conserved hypothetical protein 766; hypothetical protein 3741574..3742602 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218530.1 CDS yhjE NC_006905.1 3742953 3744275 D IPR000911: Ribosomal protein L11; IPR004736: Citrate-proton symport; IPR005828: General substrate transporter;IPR005829: Sugar transporter superfamily;IPR007114: Major facilitator superfamily; MFS family transporter 3742953..3744275 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218531.1 CDS yhjG NC_006905.1 3744315 3746375 R IPR007844: AsmA; hypothetical protein complement(3744315..3746375) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218532.1 CDS yhjH NC_006905.1 3746485 3747252 R in Escherichia coli this protein is involved in flagellar function; diguanylate phosphodiesterase complement(3746485..3747252) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218533.1 CDS kdgK NC_006905.1 3747481 3748410 D IPR002173: Carbohydrate kinase, PfkB; ketodeoxygluconokinase 3747481..3748410 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218534.1 CDS yhjJ NC_006905.1 3748464 3749951 R IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR001431: Peptidase M16, insulinase-like; IPR007863: Peptidase M16 inactive; Zn-dependent peptidase complement(3748464..3749951) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218535.1 CDS dctA NC_006905.1 3750171 3751457 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(3750171..3751457) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218536.1 CDS yhjK NC_006905.1 3751615 3753588 R HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli; phosphodiesterase complement(3751615..3753588) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218537.1 CDS yhjL NC_006905.1 3753795 3757337 R cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC complement(3753795..3757337) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218538.1 CDS SC3551 NC_006905.1 3757319 3757615 R endo-1,4-D-glucanase complement(3757319..3757615) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218539.1 CDS yhjU NC_006905.1 3757646 3758905 D hypothetical protein 3757646..3758905 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218540.1 CDS SC3553 NC_006905.1 3758987 3759118 R hypothetical protein complement(3758987..3759118) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218541.1 CDS SC3554 NC_006905.1 3759222 3759377 D hypothetical protein 3759222..3759377 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218542.1 CDS SC3555 NC_006905.1 3759468 3759608 D cystathionine gamma-synthase 3759468..3759608 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218543.1 CDS yhjV NC_006905.1 3759690 3761024 D IPR001220: Legume lectin, beta domain; IPR002422: Amino acid/polyamine transporter family II; IPR002453: Beta tubulin; HAAAP family transport protein 3759690..3761024 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218544.1 CDS dppF NC_006905.1 3761125 3762138 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(3761125..3762138) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218545.1 CDS dppD NC_006905.1 3762135 3763118 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit complement(3762135..3763118) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218546.1 CDS dppC NC_006905.1 3763129 3764031 R IPR000515: Binding-protein-dependent transport systems inner membrane component; dipeptide transporter complement(3763129..3764031) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218547.1 CDS dppB NC_006905.1 3764041 3765060 R transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB complement(3764041..3765060) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218548.1 CDS dppA NC_006905.1 3765217 3766824 R IPR000914: Bacterial extracellular solute-binding protein, family 5; peptide ABC transporter permease complement(3765217..3766824) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218549.1 CDS pucJ NC_006905.1 3767380 3768705 R IPR006043: Xanthine/uracil/vitamin C permease family; xanthine permease complement(3767380..3768705) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218550.1 CDS SC3563 NC_006905.1 3768763 3769887 R PQQ repeat-containing protein complement(3768763..3769887) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218551.1 CDS SC3564 NC_006905.1 3769875 3770087 R hypothetical protein complement(3769875..3770087) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218552.1 CDS SC3565 NC_006905.1 3769909 3770070 D hypothetical protein 3769909..3770070 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218553.1 CDS celR NC_006905.1 3770037 3771044 D IPR000843: Bacterial regulatory protein LacI, HTH motif; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; LacI family regulatory protein 3770037..3771044 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218554.2 CDS yhjW NC_006905.1 3771357 3773048 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase complement(3771357..3773048) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218555.1 CDS lpfE NC_006905.1 3773266 3773793 R IPR000259: Fimbrial protein; long polar fimbrial minor protein complement(3773266..3773793) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218556.1 CDS lpfD NC_006905.1 3773799 3774878 R IPR000259: Fimbrial protein; long polar fimbrial operon protein complement(3773799..3774878) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218557.1 CDS lpfB NC_006905.1 3777447 3778145 R IPR001829: Bacterial pili assembly chaperone; long polar fimbrial chaperone complement(3777447..3778145) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218558.1 CDS lpfA NC_006905.1 3778230 3778766 R IPR000259: Fimbrial protein; long polar fimbria complement(3778230..3778766) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218559.1 CDS yhjX NC_006905.1 3779114 3779218 R hypothetical protein complement(3779114..3779218) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218560.1 CDS yhjY NC_006905.1 3779272 3779976 R hypothetical protein complement(3779272..3779976) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218561.1 CDS tag NC_006905.1 3780133 3780714 D constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyladenine DNA glycosylase 3780133..3780714 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218562.1 CDS yiaC NC_006905.1 3780692 3781132 D IPR000182: GCN5-related N-acetyltransferase; hypothetical protein 3780692..3781132 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218563.1 CDS SC3576 NC_006905.1 3781101 3783434 R IPR006655: Prokaryotic molybdopterin oxidoreductase; IPR006656: Molybdopterin oxidoreductase; IPR006657: Molydopterin dinucleotide binding domain;IPR006658: Molybdopterin guanine dinucleotide-containing S/N-oxide reductase; biotin sulfoxide reductase complement(3781101..3783434) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218564.1 CDS yiaD NC_006905.1 3783587 3784249 D IPR001035: MotY protein; IPR006664: Bacterial outer membrane protein; IPR006665: OmpA/MotB domain;IPR006690: OmpA-like domain; outer membrane lipoprotein 3783587..3784249 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218565.1 CDS yiaE NC_006905.1 3784468 3785442 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 3784468..3785442 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218566.1 CDS yiaF NC_006905.1 3785492 3786202 R hypothetical protein complement(3785492..3786202) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218567.1 CDS yiaG NC_006905.1 3786641 3786931 D transcriptional regulator 3786641..3786931 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218568.1 CDS cspA NC_006905.1 3787219 3787431 D IPR002059: Cold-shock DNA-binding domain; cold-shock protein 3787219..3787431 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218569.1 CDS SC3582 NC_006905.1 3787605 3788144 D hypothetical protein 3787605..3788144 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218570.1 CDS SC3583 NC_006905.1 3788396 3788797 D hypothetical protein 3788396..3788797 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218571.1 CDS yis2 NC_006905.1 3788968 3789651 D IPR001584: Integrase, catalytic domain; integrase 3788968..3789651 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218572.1 CDS SC3585 NC_006905.1 3789830 3790315 R acetyltransferase complement(3789830..3790315) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218573.1 CDS SC3586 NC_006905.1 3790303 3790590 R hypothetical protein complement(3790303..3790590) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218574.1 CDS yafP NC_006905.1 3790768 3791235 R IPR000182: GCN5-related N-acetyltransferase; acetyltransferase complement(3790768..3791235) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218575.1 CDS insK NC_006905.1 3791407 3791598 R transposase insK for insertion sequence e complement(3791407..3791598) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218576.1 CDS tnp NC_006905.1 3792031 3793239 R IPR002559: Transposase, IS4; transposase of Tn10 complement(3792031..3793239) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218577.1 CDS glyS NC_006905.1 3793408 3795477 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(3793408..3795477) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218578.1 CDS glyQ NC_006905.1 3795487 3796398 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(3795487..3796398) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218579.1 CDS SC3592 NC_006905.1 3796537 3796839 R outer membrane lipoprotein complement(3796537..3796839) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218580.1 CDS yiaH NC_006905.1 3797005 3798000 D IPR002656: Acyltransferase 3 family; inner membrane protein 3797005..3798000 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218581.1 CDS yiaB NC_006905.1 3798023 3798376 R IPR008024: YiaAB two helix; hypothetical protein complement(3798023..3798376) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218582.1 CDS xylB NC_006905.1 3798551 3800005 R IPR000577: Carbohydrate kinase, FGGY; IPR006000: Xylulokinase; xylulokinase complement(3798551..3800005) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218583.1 CDS xylA NC_006905.1 3800105 3801427 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(3800105..3801427) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218584.1 CDS xylR NC_006905.1 3801790 3802968 D IPR000005: Helix-turn-helix, AraC type; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; xylose operon regulatory protein 3801790..3802968 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218585.1 CDS bax NC_006905.1 3803029 3803853 R IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; hypothetical protein complement(3803029..3803853) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218586.1 CDS malS NC_006905.1 3804169 3804891 D alpha-amylase 3804169..3804891 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218587.1 CDS lyxK NC_006905.1 3804768 3804989 D L-xylulose kinase, cryptic 3804768..3804989 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218588.1 CDS sgbH NC_006905.1 3804986 3805648 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3804986..3805648 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218589.1 CDS sgbU NC_006905.1 3805641 3806501 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase 3805641..3806501 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218590.1 CDS yisR NC_006905.1 3807351 3808166 R IPR000005: Helix-turn-helix, AraC type; IPR003313: Arac protein, arabinose-binding/dimerisation; AraC family transcriptional regulator complement(3807351..3808166) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218591.1 CDS aldB NC_006905.1 3810559 3812097 R IPR002086: Aldehyde dehydrogenase; aldehyde dehydrogenase complement(3810559..3812097) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218592.1 CDS SC3605 NC_006905.1 3812266 3813147 D IPR000600: ROK family; transcriptional regulator 3812266..3813147 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218593.1 CDS selB NC_006905.1 3813395 3815245 R IPR000795: Elongation factor, GTP-binding; IPR004161: Elongation factor Tu, domain 2; IPR004535: Translation elongation factor, selenocysteine-specific; selenocysteinyl-tRNA-specific translation factor complement(3813395..3815245) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218594.1 CDS selA NC_006905.1 3815242 3816633 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(3815242..3816633) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218595.1 CDS yibF NC_006905.1 3816732 3817340 R IPR004045: Glutathione S-transferase, N-terminal; IPR004046: Glutathione S-transferase, C-terminal; glutathione S-transferase complement(3816732..3817340) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218596.1 CDS mtlA NC_006905.1 3817816 3819732 D IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; IPR003352: Phosphotransferase system, EIIC; IPR003501: Phosphotransferase system, lactose/cellobiose-specific IIB subunit;IPR004718: PTS system mannitol-specific enzyme IIC; PTS family, mannitol-specific enzyme IIABC components 3817816..3819732 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218597.1 CDS mtlD NC_006905.1 3819938 3821101 D IPR000669: Mannitol dehydrogenase; mannitol-1-phosphate 5-dehydrogenase 3819938..3821101 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218598.1 CDS mtlR NC_006905.1 3821098 3821688 D Acts as a repressor of the mtlAD operon; mannitol repressor protein 3821098..3821688 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218599.1 CDS SC3612 NC_006905.1 3821698 3821907 R hypothetical protein complement(3821698..3821907) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218600.1 CDS yibL NC_006905.1 3822198 3822560 D hypothetical protein 3822198..3822560 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218601.1 CDS SC3614 NC_006905.1 3823048 3823731 D inner membrane lipoprotein 3823048..3823731 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218602.1 CDS dspP NC_006905.1 3823775 3828115 D IPR005594: YadA-like, C-terminal; IPR008635: Haemagluttinin motif; IPR008640: Hep_Hag; inner membrane protein 3823775..3828115 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218603.1 CDS lldP NC_006905.1 3828414 3830069 D IPR003804: L-lactate permease; L-lactate permease 3828414..3830069 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218604.1 CDS lldR NC_006905.1 3830066 3830773 D represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3830066..3830773 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218605.1 CDS lldD NC_006905.1 3830839 3832029 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3830839..3832029 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218606.1 CDS yibK NC_006905.1 3832094 3832567 D member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA/rRNA methyltransferase YibK 3832094..3832567 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218607.1 CDS lacI NC_006905.1 3832635 3833690 R IPR000843: Bacterial regulatory protein LacI, HTH motif; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; transcriptional regulator complement(3832635..3833690) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218608.1 CDS yin NC_006905.1 3833958 3835154 D IPR001354: Mandelate racemase/muconate lactonizing enzyme; mandelate racemase 3833958..3835154 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218609.1 CDS cysE NC_006905.1 3836621 3837442 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(3836621..3837442) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218610.1 CDS gpsA NC_006905.1 3837520 3838539 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3837520..3838539) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218611.1 CDS secB NC_006905.1 3838539 3839006 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(3838539..3839006) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218612.1 CDS grxC NC_006905.1 3839050 3839301 R IPR002109: Glutaredoxin; glutaredoxin 3 complement(3839050..3839301) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218613.1 CDS yibN NC_006905.1 3839387 3839818 R IPR001763: Rhodanese-like; rhodanese-related sulfurtransferase complement(3839387..3839818) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218614.1 CDS pmgI NC_006905.1 3840066 3841610 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3840066..3841610 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218615.1 CDS yibP NC_006905.1 3841620 3842903 D IPR002886: Peptidase M23/M37; hypothetical protein 3841620..3842903 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218616.1 CDS yigQ NC_006905.1 3842907 3843869 D hypothetical protein 3842907..3843869 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218617.1 CDS yibD NC_006905.1 3843856 3844818 R IPR001173: Glycosyl transferase, family 2; glycosyl transferase family protein complement(3843856..3844818) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218618.1 CDS tdh NC_006905.1 3845183 3846208 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(3845183..3846208) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218619.1 CDS kbl NC_006905.1 3846218 3847414 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase complement(3846218..3847414) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218620.1 CDS rfaD NC_006905.1 3847617 3848549 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3847617..3848549 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218621.1 CDS rfaF NC_006905.1 3848552 3849598 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3848552..3849598 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218622.1 CDS rfaC NC_006905.1 3849598 3850551 D IPR000669: Mannitol dehydrogenase; ADP-heptose--LPS heptosyltransferase 3849598..3850551 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218623.1 CDS WaaL NC_006905.1 3850591 3851805 D hypothetical protein 3850591..3851805 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218624.1 CDS rfaK NC_006905.1 3851863 3853008 R hexose transferase, lipopolysaccharide core biosynthesis complement(3851863..3853008) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218625.1 CDS rfaZ NC_006905.1 3853108 3853917 R lipopolysaccharide core biosynthesis protein complement(3853108..3853917) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218626.1 CDS rfaY NC_006905.1 3854067 3854765 R lipopolysaccharide core biosynthesis protein complement(3854067..3854765) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218627.1 CDS rfaJ NC_006905.1 3854788 3855798 R IPR000531: TonB-dependent receptor protein; UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase complement(3854788..3855798) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218628.1 CDS rfaI NC_006905.1 3855816 3856829 R IPR002495: Glycosyl transferase, family 8; UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase complement(3855816..3856829) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218629.1 CDS rfaB NC_006905.1 3856835 3857914 R UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(3856835..3857914) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218630.1 CDS yibR NC_006905.1 3857984 3858217 R inner membrane protein complement(3857984..3858217) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218631.1 CDS rfaP NC_006905.1 3858249 3859046 R lipopolysaccharide core biosynthesis; phosphorylation of core heptose complement(3858249..3859046) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218632.1 CDS rfaG NC_006905.1 3859039 3860163 R IPR001064: Beta and gamma crystallin; glucosyltransferase I complement(3859039..3860163) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218633.1 CDS rfaQ NC_006905.1 3860160 3861230 R lipopolysaccharide core biosynthesis protein complement(3860160..3861230) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218634.1 CDS kdtA NC_006905.1 3861639 3862916 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3861639..3862916 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218635.1 CDS coaD NC_006905.1 3862925 3863404 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3862925..3863404 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218636.1 CDS mutM NC_006905.1 3863431 3864240 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3863431..3864240) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218637.1 CDS rpmG NC_006905.1 3864338 3864505 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(3864338..3864505) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218638.1 CDS rpmB NC_006905.1 3864526 3864762 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(3864526..3864762) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218639.1 CDS radC NC_006905.1 3864980 3865645 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(3864980..3865645) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218640.2 CDS dfp NC_006905.1 3865821 3867041 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3865821..3867041 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218641.1 CDS dut NC_006905.1 3867019 3867477 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3867019..3867477 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218642.1 CDS slmA NC_006905.1 3867585 3868181 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3867585..3868181 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218643.1 CDS pyrE NC_006905.1 3868259 3868900 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(3868259..3868900) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218644.1 CDS rph NC_006905.1 3868979 3869695 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(3868979..3869695) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218645.1 CDS yicC NC_006905.1 3869821 3870684 D hypothetical protein 3869821..3870684 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218646.1 CDS nahR NC_006905.1 3870734 3871636 R IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator complement(3870734..3871636) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218647.1 CDS SC3660 NC_006905.1 3871710 3872591 D Zn-dependent hydrolase 3871710..3872591 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218648.1 CDS yigC NC_006905.1 3872842 3873459 D hypothetical protein 3872842..3873459 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218649.2 CDS ligB NC_006905.1 3873456 3875141 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB complement(3873456..3875141) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218651.1 CDS gmk NC_006905.1 3875311 3876021 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3875311..3876021 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218652.1 CDS rpoZ NC_006905.1 3876076 3876351 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3876076..3876351 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218653.1 CDS spoT NC_006905.1 3876370 3878481 D bifunctional; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3876370..3878481 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218654.1 CDS spoU NC_006905.1 3878486 3879175 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3878486..3879175 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218655.1 CDS recG NC_006905.1 3879181 3881262 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3879181..3881262 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218656.1 CDS SC3669 NC_006905.1 3881265 3882116 R hypothetical protein complement(3881265..3882116) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218657.1 CDS gltS NC_006905.1 3882119 3883324 R IPR004445: Sodium/glutamate symporter; GltS family glutamate transport protein complement(3882119..3883324) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218658.1 CDS yicE NC_006905.1 3883552 3884943 D IPR006042: Xanthine/uracil permease family; NCS2 family, purine/xanthine transport protein 3883552..3884943 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218659.1 CDS yicH NC_006905.1 3885064 3886773 D hypothetical protein 3885064..3886773 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218660.1 CDS yicI NC_006905.1 3886876 3889194 R catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase complement(3886876..3889194) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218661.2 CDS yicJ NC_006905.1 3889206 3890591 R may be involved in the transport of galactosides-pentoses-hexuronides; transporter complement(3889206..3890591) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218662.1 CDS SC3675 NC_006905.1 3890842 3891348 R IPR002197: Helix-turn-helix, Fis-type; transposase complement(3890842..3891348) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218663.1 CDS tnpA NC_006905.1 3891729 3891887 D transposase 3891729..3891887 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218664.1 CDS rmbA NC_006905.1 3892596 3893213 D IPR000792: Bacterial regulatory protein, LuxR family; hypothetical protein 3892596..3893213 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218665.1 CDS misL NC_006905.1 3893274 3896141 D IPR000694: Proline-rich region; IPR004899: Pertactin domain; IPR005546: Autotransporter beta-domain;IPR006315: Outer membrane autotransporter barrel; autotransported protein 3893274..3896141 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218666.1 CDS fidL NC_006905.1 3896236 3896718 R inner membrane protein complement(3896236..3896718) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218667.1 CDS marT NC_006905.1 3896711 3897568 R transcriptional regulatory protein complement(3896711..3897568) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218668.1 CDS SC3681 NC_006905.1 3897621 3897734 R hypothetical protein complement(3897621..3897734) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218669.1 CDS slsA NC_006905.1 3898353 3899033 D inner membrane protein 3898353..3899033 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218670.1 CDS cigR NC_006905.1 3899262 3899741 R inner membrane protein complement(3899262..3899741) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218671.1 CDS mgtB NC_006905.1 3900056 3902782 R IPR000695: H+ transporting ATPase, proton pump; IPR001757: ATPase, E1-E2 type; Mg2+ transport protein complement(3900056..3902782) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218672.1 CDS mgtC NC_006905.1 3903002 3903697 R IPR003416: MgtC/SapB transporter; Mg2+ transport protein complement(3903002..3903697) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218673.1 CDS yicL NC_006905.1 3904305 3905108 D permease 3904305..3905108 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218674.1 CDS yfcI NC_006905.1 3905151 3906080 R hypothetical protein complement(3905151..3906080) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218675.1 CDS SC3688 NC_006905.1 3906316 3907059 R hypothetical protein complement(3906316..3907059) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218676.1 CDS ptnD NC_006905.1 3908098 3908958 R IPR004704: PTS system mannose/fructose/sorbose family IID component; phosphotransferase system enzyme II complement(3908098..3908958) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218677.1 CDS ptpC NC_006905.1 3908955 3909704 R phosphotransferase system enzyme IIC complement(3908955..3909704) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218678.1 CDS ptfB NC_006905.1 3909850 3910335 R IPR004720: PTS system sorbose subfamily IIB component; phosphotransferase system enzyme IIB complement(3909850..3910335) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218679.1 CDS SC3692 NC_006905.1 3910346 3910771 R phosphotransferase system enzyme IIA complement(3910346..3910771) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218680.1 CDS levR NC_006905.1 3910993 3913791 R IPR002078: Sigma-54 factor interaction domain; IPR002464: ATP-dependent helicase, DEAH-box; transcriptional regulator complement(3910993..3913791) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218681.1 CDS SC3694 NC_006905.1 3913988 3914281 D inner membrane protein 3913988..3914281 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218682.1 CDS bglA NC_006905.1 3914387 3915769 D IPR001360: Glycoside hydrolase, family 1; glycosyl hydrolase family protein 3914387..3915769 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218683.1 CDS SC3696 NC_006905.1 3917192 3917596 D hypothetical protein 3917192..3917596 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218684.1 CDS SC3697 NC_006905.1 3917580 3917903 D helix-turn-helix protein 3917580..3917903 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218685.1 CDS SC3698 NC_006905.1 3918088 3918867 D hypothetical protein 3918088..3918867 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218686.1 CDS SC3699 NC_006905.1 3918895 3919218 R hypothetical protein complement(3918895..3919218) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218687.1 CDS ptfA NC_006905.1 3919218 3919487 R IPR000032: Phosphocarrier HPr protein; IPR001020: HPr histidine phosphorylation site; phosphotransferase system, HPr-related protein complement(3919218..3919487) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218688.1 CDS gatY NC_006905.1 3919497 3920357 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(3919497..3920357) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218689.1 CDS xylB NC_006905.1 3920420 3921904 R IPR000345: Cytochrome c heme-binding site; sugar (pentulose and hexulose) kinase complement(3920420..3921904) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218690.1 CDS ptkC NC_006905.1 3921897 3923255 R PTS system galactitol-specific enzyme IIC component complement(3921897..3923255) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218691.1 CDS ptkB NC_006905.1 3923331 3923618 R hypothetical protein complement(3923331..3923618) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218692.1 CDS SC3705 NC_006905.1 3923615 3924088 R IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system mannitol/fructose-specific IIA component complement(3923615..3924088) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218693.1 CDS farR NC_006905.1 3924106 3924849 R IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator complement(3924106..3924849) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218694.1 CDS yicN NC_006905.1 3925202 3925660 R hypothetical protein complement(3925202..3925660) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218695.1 CDS uhpT NC_006905.1 3925847 3927238 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter complement(3925847..3927238) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218696.1 CDS uhpB NC_006905.1 3928719 3930260 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB complement(3928719..3930260) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218697.1 CDS uhpA NC_006905.1 3930220 3930873 R response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; DNA-binding transcriptional activator UhpA complement(3930220..3930873) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218698.1 CDS vaaS NC_006905.1 3930885 3931898 R IPR003006: Immunoglobulin/major histocompatibility complex; hypothetical protein complement(3930885..3931898) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218699.1 CDS fucP NC_006905.1 3931910 3933226 R IPR007114: Major facilitator superfamily; L-fucose permease complement(3931910..3933226) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218700.1 CDS rbsK NC_006905.1 3933257 3934177 R IPR002139: Ribokinase; ribokinase family sugar kinase complement(3933257..3934177) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218701.1 CDS deoR NC_006905.1 3934491 3935276 D IPR001034: Bacterial regulatory protein, DeoR family; DeoR family transcriptional regulator 3934491..3935276 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218702.1 CDS ilvN NC_006905.1 3935278 3935568 R with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit complement(3935278..3935568) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218703.1 CDS ilvB NC_006905.1 3935572 3937260 R catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit complement(3935572..3937260) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218704.1 CDS ivbL NC_006905.1 3937367 3937465 R ilvB operon leader peptide complement(3937367..3937465) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218705.1 CDS SC3718 NC_006905.1 3938099 3938188 D toxic peptide TisB 3938099..3938188 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218706.1 CDS SC3719 NC_006905.1 3938281 3939141 D hypothetical protein 3938281..3939141 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218707.1 CDS emrD NC_006905.1 3939344 3940528 D multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 3939344..3940528 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218708.1 CDS SC3721 NC_006905.1 3940455 3941489 R hypothetical protein complement(3940455..3941489) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218709.1 CDS dsdC NC_006905.1 3941604 3942542 R regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC complement(3941604..3942542) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218710.1 CDS dsdX NC_006905.1 3942753 3944090 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 3942753..3944090 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218711.1 CDS dsdA NC_006905.1 3944108 3945430 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 3944108..3945430 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218712.1 CDS yidF NC_006905.1 3945512 3946042 R hypothetical protein complement(3945512..3946042) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218713.1 CDS yidG NC_006905.1 3946039 3946401 R hypothetical protein complement(3946039..3946401) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218714.1 CDS yidH NC_006905.1 3946391 3946738 R inner membrane protein complement(3946391..3946738) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218715.1 CDS yidE NC_006905.1 3947180 3948841 R hypothetical protein complement(3947180..3948841) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218716.1 CDS yis2 NC_006905.1 3948985 3949668 R integrase complement(3948985..3949668) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218717.1 CDS SC3730 NC_006905.1 3949839 3950240 R hypothetical protein complement(3949839..3950240) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218718.1 CDS ibpB NC_006905.1 3950345 3950773 R 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB complement(3950345..3950773) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218719.1 CDS ibpA NC_006905.1 3950883 3951296 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA complement(3950883..3951296) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218720.2 CDS yidQ NC_006905.1 3951603 3951938 D hypothetical protein 3951603..3951938 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218721.1 CDS yidR NC_006905.1 3951940 3953166 R hypothetical protein complement(3951940..3953166) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218722.1 CDS ccmG NC_006905.1 3954105 3954662 R IPR004799: Periplasmic protein thiol:disulfide oxidoreductase DsbE; IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; heme lyase disulfide oxidoreductase, cytocyhrome c-type biogenesis complement(3954105..3954662) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218723.1 CDS ccmF NC_006905.1 3954659 3956590 R IPR003567: Cytochrome c-type biogenesis protein; IPR003568: Cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein complement(3954659..3956590) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218724.1 CDS ccmA NC_006905.1 3956587 3957510 R IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR004329: CcmE/CycJ protein; heme ABC exporter ATP-binding protein complement(3956587..3957510) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218725.1 CDS yhjA NC_006905.1 3957603 3959003 R IPR000345: Cytochrome c heme-binding site; cytochrome c peroxidase complement(3957603..3959003) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218726.1 CDS torD NC_006905.1 3959193 3959825 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD complement(3959193..3959825) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218727.1 CDS torA NC_006905.1 3959818 3962370 R IPR006655: Prokaryotic molybdopterin oxidoreductase; trimethylamine N-oxide reductase subunit complement(3959818..3962370) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218728.1 CDS torC NC_006905.1 3962360 3963544 R IPR000345: Cytochrome c heme-binding site; IPR005126: NapC/NirT cytochrome c, N-terminal; trimethylamine N-oxide reductase, cytochrome c-type subunit, also has activity as negativer regulator of tor operon complement(3962360..3963544) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218729.1 CDS torR NC_006905.1 3963674 3964366 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 3963674..3964366 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218730.1 CDS torS NC_006905.1 3965459 3968194 D Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 3965459..3968194 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218731.1 CDS dgoT NC_006905.1 3968220 3969557 R IPR000849: GlpT transporter; IPR004744: D-galactonate transporter; IPR005828: General substrate transporter;IPR007114: Major facilitator superfamily; major facilitator superfamily D-galactonate transporter complement(3968220..3969557) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218732.1 CDS dgoA NC_006905.1 3969642 3970790 R in bifunctional: 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase; IPR001354: Mandelate racemase/muconate lactonizing enzyme; galactonate dehydratase complement(3969642..3970790) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218733.1 CDS dgoA NC_006905.1 3970787 3971404 R catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(3970787..3971404) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218734.1 CDS dgoK NC_006905.1 3971388 3972266 R 2-oxo-3-deoxygalactonate kinase complement(3971388..3972266) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218735.1 CDS dgoR NC_006905.1 3972263 3972952 R IPR000524: Bacterial regulatory protein, GntR family; galactonate operon transcriptional repressor complement(3972263..3972952) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218736.1 CDS yidA NC_006905.1 3973213 3974058 R YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase complement(3973213..3974058) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218737.1 CDS gudP NC_006905.1 3974347 3975609 D IPR007114: Major facilitator superfamily; permease 3974347..3975609 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218738.1 CDS dgoA NC_006905.1 3975623 3976816 D IPR001354: Mandelate racemase/muconate lactonizing enzyme; mandelate racemase 3975623..3976816 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218739.1 CDS SC3752 NC_006905.1 3977063 3977851 D LysR family transcriptional regulator 3977063..3977851 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218740.1 CDS gyrB NC_006905.1 3977848 3980262 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(3977848..3980262) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218741.1 CDS recF NC_006905.1 3980291 3981364 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(3980291..3981364) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218742.1 CDS dnaN NC_006905.1 3981512 3982612 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(3981512..3982612) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218743.1 CDS dnaA NC_006905.1 3982617 3984017 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA complement(3982617..3984017) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218744.1 CDS rpmH NC_006905.1 3984678 3984818 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3984678..3984818 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218745.1 CDS rnpA NC_006905.1 3984868 3985284 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3984868..3985284 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218746.1 CDS yidC NC_006905.1 3985417 3987063 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 3985417..3987063 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218747.1 CDS trmE NC_006905.1 3987205 3988569 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3987205..3988569 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218748.1 CDS yidY NC_006905.1 3988752 3989939 D Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 3988752..3989939 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218749.1 CDS yieE NC_006905.1 3990997 3991752 D hypothetical protein 3990997..3991752 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218750.2 CDS yieF NC_006905.1 3991770 3992336 D IPR005025: NADPH-dependent FMN reductase; hypothetical protein 3991770..3992336 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218751.1 CDS SC3764 NC_006905.1 3992343 3992663 R hypothetical protein complement(3992343..3992663) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218752.1 CDS yieG NC_006905.1 3992814 3994277 R IPR002040: Tachykinin/Neurokinin; IPR006043: Xanthine/uracil/vitamin C permease family; xanthine/uracil permease family protein complement(3992814..3994277) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218753.1 CDS yieH NC_006905.1 3994320 3994985 D YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase 3994320..3994985 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218754.1 CDS phoU NC_006905.1 3995080 3995805 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(3995080..3995805) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218755.1 CDS pstB NC_006905.1 3995820 3996593 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(3995820..3996593) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218756.1 CDS pstA NC_006905.1 3996680 3997570 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(3996680..3997570) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218757.1 CDS pstC NC_006905.1 3997570 3998529 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC complement(3997570..3998529) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218758.1 CDS pstS NC_006905.1 3998665 3999705 R phosphate ABC transporter substrate-binding protein complement(3998665..3999705) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218759.1 CDS aroE NC_006905.1 4001272 4002090 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4001272..4002090) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218760.1 CDS yabN NC_006905.1 4002278 4003942 D dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein 4002278..4003942 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218761.1 CDS glmS NC_006905.1 4004093 4005922 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4004093..4005922) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218762.1 CDS glmU NC_006905.1 4006111 4007481 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4006111..4007481) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218763.1 CDS atpC NC_006905.1 4008727 4009146 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon complement(4008727..4009146) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218764.1 CDS atpD NC_006905.1 4009167 4010549 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(4009167..4010549) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218765.1 CDS atpG NC_006905.1 4010576 4011439 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(4010576..4011439) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218766.1 CDS atpA NC_006905.1 4011490 4013031 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(4011490..4013031) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218767.1 CDS atpH NC_006905.1 4013044 4013577 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(4013044..4013577) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218768.1 CDS atpF NC_006905.1 4013592 4014062 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B complement(4013592..4014062) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218769.1 CDS atpL NC_006905.1 4014122 4014361 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(4014122..4014361) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218770.1 CDS atpB NC_006905.1 4014408 4015223 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(4014408..4015223) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218771.2 CDS atpI NC_006905.1 4015232 4015612 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(4015232..4015612) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218772.1 CDS SC3785 NC_006905.1 4015727 4015870 R hypothetical protein complement(4015727..4015870) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218773.1 CDS gidB NC_006905.1 4016227 4016850 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4016227..4016850) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218774.1 CDS gidA NC_006905.1 4016953 4018842 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4016953..4018842) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218775.1 CDS mioC NC_006905.1 4019221 4019664 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(4019221..4019664) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218776.1 CDS asnC NC_006905.1 4019754 4020212 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(4019754..4020212) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218777.1 CDS asnA NC_006905.1 4020363 4021355 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4020363..4021355 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218778.1 CDS yieM NC_006905.1 4021360 4022811 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein complement(4021360..4022811) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218779.2 CDS yieN NC_006905.1 4022805 4024301 R interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA complement(4022805..4024301) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218780.1 CDS trkD NC_006905.1 4024649 4026517 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4024649..4026517 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218781.1 CDS rbsD NC_006905.1 4026733 4027152 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4026733..4027152 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218782.1 CDS rbsA NC_006905.1 4027115 4028665 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 4027115..4028665 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218783.1 CDS rbsC NC_006905.1 4028671 4029663 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4028671..4029663 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218784.1 CDS rbsB NC_006905.1 4029660 4030550 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4029660..4030550 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218785.1 CDS rbsK NC_006905.1 4030683 4031612 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4030683..4031612 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218786.1 CDS rbsR NC_006905.1 4031625 4032614 D DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4031625..4032614 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218787.1 CDS yieO NC_006905.1 4032580 4034007 R IPR001411: Tetracycline resistance protein TetB; IPR007114: Major facilitator superfamily; MFS family tranport protein complement(4032580..4034007) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218788.1 CDS yieP NC_006905.1 4034019 4034723 R IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator complement(4034019..4034723) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218791.1 CDS yifA NC_006905.1 4040691 4041539 R Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR complement(4040691..4041539) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218792.1 CDS yifE NC_006905.1 4041646 4041984 D hypothetical protein 4041646..4041984 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218793.1 CDS yifB NC_006905.1 4042009 4043529 R among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; ATP-dependent protease complement(4042009..4043529) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218794.1 CDS ilvM NC_006905.1 4045746 4046009 D acetolactate synthase 2 regulatory subunit 4045746..4046009 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218795.1 CDS ilvE NC_006905.1 4046027 4046956 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4046027..4046956 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218796.1 CDS ilvD NC_006905.1 4047116 4048966 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4047116..4048966 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218797.1 CDS ilvA NC_006905.1 4048969 4050513 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4048969..4050513 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218798.1 CDS SC3811 NC_006905.1 4050796 4051113 D hypothetical protein 4050796..4051113 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218799.1 CDS SC3812 NC_006905.1 4051110 4051451 D hypothetical protein 4051110..4051451 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218800.1 CDS ilvY NC_006905.1 4051454 4052341 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(4051454..4052341) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218801.1 CDS ilvC NC_006905.1 4052506 4053981 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4052506..4053981 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218802.1 CDS ppiC NC_006905.1 4054073 4054354 R IPR000297: PpiC-type peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl cis-trans isomerase C complement(4054073..4054354) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218803.1 CDS SC3816 NC_006905.1 4054359 4054706 D hypothetical protein 4054359..4054706 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218804.1 CDS punC NC_006905.1 4054682 4054792 D inner membrane protein 4054682..4054792 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218805.1 CDS rep NC_006905.1 4054793 4056916 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4054793..4056916 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218806.1 CDS gppA NC_006905.1 4056956 4058437 R catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase complement(4056956..4058437) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218807.1 CDS rhlB NC_006905.1 4058556 4059821 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(4058556..4059821) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218808.1 CDS trxA NC_006905.1 4059887 4060294 D IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; thioredoxin 4059887..4060294 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218809.1 CDS rho NC_006905.1 4060641 4061972 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4060641..4061972 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218810.1 CDS wecA NC_006905.1 4062212 4063315 D undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4062212..4063315 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218811.1 CDS wzzE NC_006905.1 4063327 4064373 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4063327..4064373 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218812.1 CDS wecB NC_006905.1 4064552 4065559 D UDP-N-acetyl glucosamine -2-epimerase 4064552..4065559 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218813.2 CDS wecC NC_006905.1 4065556 4066818 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4065556..4066818 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218814.1 CDS rffG NC_006905.1 4066818 4067885 D dTDP-glucose 4,6-dehydratase 4066818..4067885 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218815.1 CDS rffH NC_006905.1 4067918 4068799 D glucose-1-phosphate thymidylyltransferase 4067918..4068799 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218816.1 CDS wecD NC_006905.1 4068777 4069454 D TDP-fucosamine acetyltransferase 4068777..4069454 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218817.1 CDS wecE NC_006905.1 4069459 4070589 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4069459..4070589 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218818.1 CDS wzxE NC_006905.1 4070591 4071841 D O-antigen translocase in LPS biosyntesis 4070591..4071841 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218819.1 CDS SC3832 NC_006905.1 4071838 4072917 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4071838..4072917 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218820.1 CDS wecF NC_006905.1 4072914 4074272 D enterobacterial common antigen polymerase; common antigen polymerase 4072914..4074272 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218821.1 CDS wecG NC_006905.1 4074269 4075009 D UDP-N-acetyl-D-mannosaminuronic acid transferase 4074269..4075009 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218822.1 CDS yifK NC_006905.1 4075216 4076601 D uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transporter 4075216..4076601 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218823.1 CDS hemY NC_006905.1 4077718 4078917 R a late step of protoheme IX synthesis; IPR001440: TPR repeat; IPR001993: Mitochondrial substrate carrier; IPR005254: Protoheme IX biosynthesis protein; protoheme IX biogenesis protein complement(4077718..4078917) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218824.1 CDS hemX NC_006905.1 4078917 4080086 R uroporphyrinogen III C-methyltransferase complement(4078917..4080086) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218825.1 CDS hemD NC_006905.1 4080108 4080848 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(4080108..4080848) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218826.1 CDS hemC NC_006905.1 4080845 4081807 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(4080845..4081807) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218827.1 CDS cyaA NC_006905.1 4082163 4084709 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4082163..4084709 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218828.1 CDS cyaY NC_006905.1 4084787 4085107 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(4084787..4085107) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218829.1 CDS SC3842 NC_006905.1 4085177 4085566 R inner membrane protein complement(4085177..4085566) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218830.1 CDS SC3843 NC_006905.1 4085554 4085784 R hypothetical protein complement(4085554..4085784) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218831.1 CDS SC3844 NC_006905.1 4085823 4086074 R hypothetical protein complement(4085823..4086074) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218832.1 CDS yifL NC_006905.1 4086260 4086463 D outer membrane lipoprotein 4086260..4086463 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218833.2 CDS dapF NC_006905.1 4086500 4087324 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4086500..4087324 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218834.1 CDS yigA NC_006905.1 4087321 4088028 D hypothetical protein 4087321..4088028 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218835.1 CDS xerC NC_006905.1 4088025 4088927 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4088025..4088927 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218836.1 CDS yigB NC_006905.1 4088927 4089643 D YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4088927..4089643 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218837.1 CDS uvrD NC_006905.1 4089779 4091941 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4089779..4091941 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218838.1 CDS corA NC_006905.1 4092413 4093363 D responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4092413..4093363 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218839.1 CDS SC3852 NC_006905.1 4093411 4093791 R hypothetical protein complement(4093411..4093791) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218840.1 CDS SC3853 NC_006905.1 4093948 4094262 D hypothetical protein 4093948..4094262 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218841.1 CDS rarD NC_006905.1 4094302 4095189 R chloramphenicol resistance complement(4094302..4095189) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218842.2 CDS yigI NC_006905.1 4095233 4095700 R IPR003736: Phenylacetic acid degradation-related protein; IPR006683: Thioesterase superfamily; hypothetical protein complement(4095233..4095700) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218843.1 CDS pldA NC_006905.1 4095865 4096734 D catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4095865..4096734 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218844.1 CDS recQ NC_006905.1 4096800 4098647 D functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4096800..4098647 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218845.1 CDS rhtC NC_006905.1 4098711 4099331 D IPR001123: Lysine exporter protein (LYSE/YGGA); threonine efflux system 4098711..4099331 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218846.1 CDS rhtB NC_006905.1 4099371 4099991 R IPR001123: Lysine exporter protein (LYSE/YGGA); homoserine/homoserine lactone efflux protein complement(4099371..4099991) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218847.1 CDS pldB NC_006905.1 4100006 4101118 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4100006..4101118 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218848.1 CDS yigL NC_006905.1 4101134 4101934 D purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; sugar phosphatase 4101134..4101934 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218849.1 CDS yigM NC_006905.1 4102015 4102914 D transporter 4102015..4102914 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218850.1 CDS metR NC_006905.1 4102802 4103755 R IPR000847: Bacterial regulatory protein LysR, HTH motif; metE/metH transcriptional regulator complement(4102802..4103755) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218851.1 CDS metE NC_006905.1 4104004 4106268 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4104004..4106268 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218852.1 CDS dlhH NC_006905.1 4108025 4108837 R dienelactone hydrolase family protein complement(4108025..4108837) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218853.1 CDS udp NC_006905.1 4109096 4109857 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4109096..4109857 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218854.1 CDS yigN NC_006905.1 4109997 4111427 D YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4109997..4111427 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218855.1 CDS ubiE NC_006905.1 4111523 4112278 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4111523..4112278 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218856.1 CDS yigP NC_006905.1 4112288 4112893 D hypothetical protein 4112288..4112893 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218857.1 CDS ubiB NC_006905.1 4112890 4114530 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 4112890..4114530 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218858.1 CDS tatA NC_006905.1 4114736 4114990 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin-arginine translocation protein TatA 4114736..4114990 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218859.1 CDS tatB NC_006905.1 4114994 4115542 D mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4114994..4115542 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218860.1 CDS tatC NC_006905.1 4115545 4116324 D with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4115545..4116324 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218861.1 CDS yigW NC_006905.1 4116366 4117148 D magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4116366..4117148 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218862.1 CDS rfaH NC_006905.1 4117156 4117644 R transcriptional activator RfaH complement(4117156..4117644) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218863.1 CDS yigC NC_006905.1 4117830 4119308 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4117830..4119308 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218864.1 CDS fre NC_006905.1 4119394 4120095 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4119394..4120095 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218865.1 CDS SC3878 NC_006905.1 4120349 4122172 D hypothetical protein 4120349..4122172 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218866.1 CDS fadA NC_006905.1 4122369 4123532 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(4122369..4123532) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218867.2 CDS fadB NC_006905.1 4123542 4125731 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(4123542..4125731) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218868.1 CDS pepQ NC_006905.1 4125921 4127252 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4125921..4127252 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218869.1 CDS yigZ NC_006905.1 4127252 4127866 D IPR001498: Protein of unknown function UPF0029; hypothetical protein 4127252..4127866 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218870.1 CDS hemG NC_006905.1 4129368 4129913 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4129368..4129913 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218873.1 CDS mobB NC_006905.1 4135762 4136292 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein B complement(4135762..4136292) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218874.1 CDS mobA NC_006905.1 4136274 4136858 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4136274..4136858) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218875.1 CDS yihD NC_006905.1 4136928 4137197 D hypothetical protein 4136928..4137197 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218876.1 CDS yihE NC_006905.1 4137274 4138260 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4137274..4138260 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218877.1 CDS dsbA NC_006905.1 4138277 4138900 D IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; protein disulfide isomerase I 4138277..4138900 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218878.1 CDS polA NC_006905.1 4140207 4142993 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4140207..4142993 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218879.1 CDS SC3892 NC_006905.1 4143200 4143343 D hypothetical protein 4143200..4143343 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218880.1 CDS engB NC_006905.1 4143328 4143960 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(4143328..4143960) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218881.1 CDS SC3894 NC_006905.1 4144200 4144424 D hypothetical protein 4144200..4144424 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218882.1 CDS yihI NC_006905.1 4144543 4145058 D hypothetical protein 4144543..4145058 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218883.1 CDS hemN NC_006905.1 4145247 4146620 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4145247..4146620 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218884.2 CDS glnG NC_006905.1 4146933 4148342 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) complement(4146933..4148342) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218885.1 CDS glnL NC_006905.1 4148351 4149400 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) complement(4148351..4149400) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218886.1 CDS glnA NC_006905.1 4149675 4151084 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(4149675..4151084) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218887.1 CDS typA NC_006905.1 4151460 4153283 D IPR000640: Elongation factor G, C-terminal; IPR000795: Elongation factor, GTP-binding; IPR004161: Elongation factor Tu, domain 2;IPR005225: Small GTP-binding protein domain;IPR006298: GTP-binding protein TypA; GTP-binding protein 4151460..4153283 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218888.1 CDS ybhA NC_006905.1 4153338 4154072 R IPR000150: Cof protein; hydrolase complement(4153338..4154072) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218889.1 CDS SC3902 NC_006905.1 4154057 4154935 R inner membrane protein complement(4154057..4154935) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218890.1 CDS hemN NC_006905.1 4154932 4156173 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(4154932..4156173) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218891.1 CDS SC3904 NC_006905.1 4156175 4157050 R membrane-associated, metal-dependent hydrolase complement(4156175..4157050) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218892.1 CDS SC3905 NC_006905.1 4157043 4158068 R hypothetical protein complement(4157043..4158068) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218893.1 CDS SC3906 NC_006905.1 4158081 4158929 R hypothetical protein complement(4158081..4158929) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218894.2 CDS ompL NC_006905.1 4159086 4159778 R porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; porin complement(4159086..4159778) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218895.1 CDS yihO NC_006905.1 4159846 4161267 R IPR001927: Sodium:galactoside symporter; GPH family transport protein complement(4159846..4161267) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218896.1 CDS yihP NC_006905.1 4161313 4162695 R IPR001927: Sodium:galactoside symporter; GPH family transport protein complement(4161313..4162695) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218897.1 CDS yihQ NC_006905.1 4162741 4164777 R alpha-glucosidase complement(4162741..4164777) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218898.1 CDS yihR NC_006905.1 4164821 4165678 R IPR008183: Aldose 1-epimerase; hypothetical protein complement(4164821..4165678) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218899.1 CDS yihT NC_006905.1 4166767 4167642 R aldolase complement(4166767..4167642) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218900.1 CDS yihU NC_006905.1 4167685 4168560 R IPR000205: NAD-binding site; IPR002204: 3-hydroxyisobutyrate dehydrogenase; oxidoreductase complement(4167685..4168560) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218901.1 CDS yihV NC_006905.1 4168725 4169621 D IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; sugar kinase 4168725..4169621 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218902.1 CDS yihW NC_006905.1 4169655 4170458 D IPR001034: Bacterial regulatory protein, DeoR family; glycerol-3-phosphate regulon repressor 4169655..4170458 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218903.1 CDS yihX NC_006905.1 4170649 4171248 D IPR005833: Haloacid dehalogenase/epoxide hydrolase; phosphatase 4170649..4171248 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218904.1 CDS rbn NC_006905.1 4171242 4172114 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4171242..4172114 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218905.1 CDS yihZ NC_006905.1 4172111 4172548 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4172111..4172548 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218906.1 CDS yiiD NC_006905.1 4172545 4173534 D IPR000182: GCN5-related N-acetyltransferase; acetyltransferase 4172545..4173534 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218907.1 CDS bah NC_006905.1 4173786 4174463 R IPR000379: Esterase/lipase/thioesterase; IPR002168: Lipolytic enzyme; acetyl esterase complement(4173786..4174463) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218908.1 CDS SC3921 NC_006905.1 4174657 4174881 R hypothetical protein complement(4174657..4174881) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218909.1 CDS SC3922 NC_006905.1 4174861 4174992 D hypothetical protein 4174861..4174992 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218910.1 CDS SC3923 NC_006905.1 4174993 4175283 D MerR family transcriptional regulator 4174993..4175283 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218911.1 CDS fdhE NC_006905.1 4175330 4176259 R required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE complement(4175330..4176259) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218912.1 CDS fdoI NC_006905.1 4176256 4176891 R cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma complement(4176256..4176891) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218913.1 CDS fdoH NC_006905.1 4176888 4177790 R IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; formate dehydrogenase-O, Fe-S subunit complement(4176888..4177790) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218914.1 CDS fdhD NC_006905.1 4181048 4181884 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4181048..4181884 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218915.1 CDS SC3928 NC_006905.1 4182149 4183180 R inner membrane lipoprotein complement(4182149..4183180) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218916.1 CDS yiiG NC_006905.1 4183363 4184463 D hypothetical protein 4183363..4184463 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218917.1 CDS SC3930 NC_006905.1 4184818 4185141 R hypothetical protein complement(4184818..4185141) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218918.1 CDS SC3931 NC_006905.1 4185141 4185800 R IPR004471: AzlC protein; hypothetical protein complement(4185141..4185800) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218919.1 CDS SC3932 NC_006905.1 4185835 4186449 D IPR007113: Cupin domain; hypothetical protein 4185835..4186449 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218920.1 CDS yiiL NC_006905.1 4186538 4186852 R hypothetical protein complement(4186538..4186852) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218921.1 CDS adh2 NC_006905.1 4186849 4187997 R IPR001670: Iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(4186849..4187997) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218922.1 CDS rhaD NC_006905.1 4188124 4188951 R rhamnulose-1-phosphate aldolase complement(4188124..4188951) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218923.1 CDS rhaA NC_006905.1 4189094 4190353 R catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase complement(4189094..4190353) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218924.1 CDS rhaB NC_006905.1 4190350 4191819 R catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase complement(4190350..4191819) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218925.1 CDS rhaS NC_006905.1 4192107 4192943 D activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4192107..4192943 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218926.1 CDS rhaR NC_006905.1 4193096 4193944 D activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4193096..4193944 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218927.1 CDS rhaT NC_006905.1 4193941 4194975 R transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter complement(4193941..4194975) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218928.1 CDS SC3941 NC_006905.1 4194940 4195110 D hypothetical protein 4194940..4195110 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218929.1 CDS yiiY NC_006905.1 4195594 4196277 D hypothetical protein 4195594..4196277 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218930.1 CDS ygiK NC_006905.1 4196436 4197743 R C4-dicarboxylate transport system complement(4196436..4197743) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218931.1 CDS SC3944 NC_006905.1 4197736 4198251 R C4-dicarboxylate transport system complement(4197736..4198251) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218932.1 CDS yiiZ NC_006905.1 4198270 4199253 R dicarboxylate-binding periplasmic protein complement(4198270..4199253) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218933.1 CDS sodA NC_006905.1 4199582 4200202 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4199582..4200202 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218934.2 CDS yiiM NC_006905.1 4200272 4200961 D IPR005163: 3-alpha domain; IPR005302: MOSC domain; hypothetical protein 4200272..4200961 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218935.1 CDS SC3948 NC_006905.1 4200973 4201368 D inner membrane protein 4200973..4201368 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218936.1 CDS cpxA NC_006905.1 4201419 4202792 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein complement(4201419..4202792) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218937.1 CDS cpxR NC_006905.1 4202789 4203487 R response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR complement(4202789..4203487) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218938.1 CDS cpxP NC_006905.1 4203638 4204138 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4203638..4204138 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218939.1 CDS fieF NC_006905.1 4204285 4205187 D member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F 4204285..4205187 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218940.1 CDS pfkA NC_006905.1 4205372 4206334 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4205372..4206334 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218941.1 CDS sbp NC_006905.1 4206538 4207527 D IPR000957: Prokaryotic sulfate-/thiosulfate-binding protein; sulfate transporter subunit 4206538..4207527 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218942.1 CDS ushB NC_006905.1 4207493 4208383 D CDP-diacylglycerol pyrophosphatase 4207493..4208383 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218943.1 CDS yicJ NC_006905.1 4208646 4209980 D IPR001927: Sodium:galactoside symporter; Na+:galactoside symporter family permease 4208646..4209980 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218944.1 CDS SC3957 NC_006905.1 4209991 4210950 D phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4209991..4210950 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218945.1 CDS yegU NC_006905.1 4210960 4212000 D ADP-ribosylglycohydrolase 4210960..4212000 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218946.1 CDS farR NC_006905.1 4212063 4212785 D IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 4212063..4212785 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218947.1 CDS cdh NC_006905.1 4212883 4213194 D hypothetical protein 4212883..4213194 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218948.1 CDS SC3961 NC_006905.1 4213284 4213634 R IPR007113: Cupin domain; mannose-6-phosphate isomerase complement(4213284..4213634) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218949.1 CDS ydeV NC_006905.1 4213648 4215240 R autoinducer-2 (AI-2) kinase complement(4213648..4215240) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218950.1 CDS ydeW NC_006905.1 4215327 4216286 R IPR007324: sugar-binding domain; transcriptional repressor complement(4215327..4216286) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218951.1 CDS ydeY NC_006905.1 4218070 4219113 D IPR001851: Bacterial inner-membrane translocator; sugar ABC transporter membrane subunit 4218070..4219113 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218952.1 CDS ydeZ NC_006905.1 4219113 4220111 D IPR001851: Bacterial inner-membrane translocator; sugar ABC transporter membrane subunit 4219113..4220111 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218953.1 CDS yneA NC_006905.1 4220140 4221162 D sugar ABC transporter periplasmic subunit 4220140..4221162 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218954.1 CDS yneB NC_006905.1 4221191 4222066 D IPR001064: Beta and gamma crystallin; aldolase 4221191..4222066 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218955.1 CDS yneC NC_006905.1 4222110 4222439 D autoinducer-2 (AI-2) modifying protein LsrG 4222110..4222439 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218956.1 CDS rpe NC_006905.1 4222449 4223213 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; epimerase 4222449..4223213 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218957.1 CDS tpiA NC_006905.1 4223305 4224072 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(4223305..4224072) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218958.1 CDS yiiQ NC_006905.1 4224185 4224784 R hypothetical protein complement(4224185..4224784) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218959.1 CDS yiiR NC_006905.1 4224882 4225310 D hypothetical protein 4224882..4225310 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218960.1 CDS fpr NC_006905.1 4225416 4226162 R IPR000531: TonB-dependent receptor protein; ferredoxin-NADP reductase complement(4225416..4226162) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218961.2 CDS glpX NC_006905.1 4226259 4227269 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(4226259..4227269) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218962.1 CDS glpK NC_006905.1 4227381 4228889 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(4227381..4228889) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218963.1 CDS glpF NC_006905.1 4228910 4229755 R IPR000425: MIP family; MIP channel protein complement(4228910..4229755) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218964.1 CDS yiiU NC_006905.1 4230154 4230393 D hypothetical protein 4230154..4230393 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218965.1 CDS menG NC_006905.1 4230615 4231100 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(4230615..4231100) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218966.1 CDS menA NC_006905.1 4231193 4232122 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(4231193..4232122) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218967.1 CDS hslU NC_006905.1 4232189 4233520 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(4232189..4233520) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218968.1 CDS hslV NC_006905.1 4233530 4234060 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(4233530..4234060) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218969.1 CDS ftsN NC_006905.1 4234152 4235147 R cell division protein FtsN complement(4234152..4235147) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218970.2 CDS cytR NC_006905.1 4235241 4236266 R negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR complement(4235241..4236266) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218971.1 CDS priA NC_006905.1 4236421 4238619 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(4236421..4238619) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218972.2 CDS rpmE NC_006905.1 4238823 4239035 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4238823..4239035 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218973.1 CDS SC3986 NC_006905.1 4239137 4239538 D hypothetical protein 4239137..4239538 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218974.1 CDS yis2 NC_006905.1 4239709 4240392 D integrase 4239709..4240392 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218975.1 CDS SC3988 NC_006905.1 4240396 4241058 R outer membrane lipoprotein complement(4240396..4241058) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218976.1 CDS SC3989 NC_006905.1 4241259 4243049 R arylsulfate sulfotransferase complement(4241259..4243049) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218977.1 CDS metJ NC_006905.1 4243507 4243824 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(4243507..4243824) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218978.1 CDS metB NC_006905.1 4244089 4245249 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4244089..4245249 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218979.1 CDS metL NC_006905.1 4245252 4247684 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4245252..4247684 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218980.1 CDS SC3993 NC_006905.1 4247800 4248657 R IPR006685: Mechanosensitive (MS) ion channel; IPR006686: Mechanosensitive (MS) ion channel subdomain; IPR008910: Conserved TM helix; inner membrane protein complement(4247800..4248657) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218981.1 CDS SC3994 NC_006905.1 4248660 4249358 R hypothetical protein complement(4248660..4249358) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218982.1 CDS SC3995 NC_006905.1 4249367 4249657 R hypothetical protein complement(4249367..4249657) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218983.1 CDS SC3996 NC_006905.1 4249892 4251016 R hypothetical protein complement(4249892..4251016) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218984.1 CDS metF NC_006905.1 4252902 4253792 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4252902..4253792 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218985.1 CDS katG NC_006905.1 4253957 4256137 D IPR000763: Bacterial haem catalase/peroxidase; IPR002016: Haem peroxidase; IPR002207: Plant ascorbate peroxidase; catalase 4253957..4256137 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218986.1 CDS yijF NC_006905.1 4256195 4256818 R hypothetical protein complement(4256195..4256818) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218987.1 CDS gldA NC_006905.1 4257077 4258174 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(4257077..4258174) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218988.1 CDS talC NC_006905.1 4258186 4258848 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase complement(4258186..4258848) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218989.1 CDS ptsA NC_006905.1 4258859 4261360 R IPR000032: Phosphocarrier HPr protein; IPR000121: PEP-utilizing enzyme; IPR001020: HPr histidine phosphorylation site;IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;IPR008279: PEP-utilising enzyme, mobile region; general PTS family protein I complement(4258859..4261360) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218990.1 CDS frwC NC_006905.1 4261669 4262748 D FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; fructose-like permease EIIC subunit 2 4261669..4262748 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218991.1 CDS frwB NC_006905.1 4262763 4263083 D FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; PTS system fructose-like transporter subunit EIIB 4262763..4263083 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218992.1 CDS pflC NC_006905.1 4265444 4266322 D IPR001989: Radical-activating enzyme; pyruvate formate lyase II activase 4265444..4266322 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218993.1 CDS frwD NC_006905.1 4266324 4266677 D FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; fructose-like phosphotransferase EIIB subunit 3 4266324..4266677 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218994.1 CDS yijO NC_006905.1 4266664 4267515 R IPR000005: Helix-turn-helix, AraC type; paral regulator complement(4266664..4267515) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218995.1 CDS yijP NC_006905.1 4267676 4269409 R hypothetical protein complement(4267676..4269409) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218996.1 CDS ppc NC_006905.1 4269620 4272271 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(4269620..4272271) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218997.1 CDS argE NC_006905.1 4272640 4273791 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(4272640..4273791) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218998.1 CDS argC NC_006905.1 4273880 4274884 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4273880..4274884 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_218999.1 CDS argB NC_006905.1 4274895 4275668 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4274895..4275668 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219000.1 CDS argH NC_006905.1 4275786 4277162 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4275786..4277162 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219001.1 CDS oxyR NC_006905.1 4277449 4278366 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4277449..4278366 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219002.1 CDS udhA NC_006905.1 4278349 4279749 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(4278349..4279749) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219003.1 CDS yijC NC_006905.1 4279948 4280583 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 4279948..4280583 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219004.1 CDS yijD NC_006905.1 4280599 4280958 D hypothetical protein 4280599..4280958 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219005.1 CDS trmA NC_006905.1 4281005 4282105 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(4281005..4282105) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219006.2 CDS btuB NC_006905.1 4282479 4284323 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4282479..4284323 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219007.1 CDS murI NC_006905.1 4284268 4285119 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4284268..4285119 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219012.1 CDS murB NC_006905.1 4290689 4291717 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4290689..4291717 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219013.1 CDS birA NC_006905.1 4291714 4292676 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 4291714..4292676 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219014.1 CDS coaA NC_006905.1 4292711 4293667 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(4292711..4293667) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219015.1 CDS gns NC_006905.1 4293870 4294043 R hypothetical protein complement(4293870..4294043) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219016.1 CDS SC4029 NC_006905.1 4294246 4294362 D hypothetical protein 4294246..4294362 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219017.1 CDS tuf NC_006905.1 4294620 4295804 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4294620..4295804 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219018.1 CDS secE NC_006905.1 4296034 4296417 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4296034..4296417 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219019.1 CDS nusG NC_006905.1 4296419 4296964 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4296419..4296964 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219020.1 CDS rplK NC_006905.1 4297122 4297550 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4297122..4297550 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219021.1 CDS rplA NC_006905.1 4297554 4298258 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4297554..4298258 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219022.1 CDS rplJ NC_006905.1 4298678 4299175 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4298678..4299175 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219023.2 CDS rplL NC_006905.1 4299242 4299607 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4299242..4299607 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219024.1 CDS rpoB NC_006905.1 4299811 4303953 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4299811..4303953 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219025.1 CDS rpoC NC_006905.1 4304030 4308253 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4304030..4308253 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219026.1 CDS SC4039 NC_006905.1 4308295 4308621 D inner membrane protein 4308295..4308621 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219027.1 CDS SC4040 NC_006905.1 4309366 4310376 D hypothetical protein 4309366..4310376 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219028.1 CDS thiH NC_006905.1 4310597 4311730 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(4310597..4311730) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219029.2 CDS thiG NC_006905.1 4311727 4312497 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(4311727..4312497) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219030.1 CDS thiF NC_006905.1 4312680 4313438 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(4312680..4313438) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219031.1 CDS thiE NC_006905.1 4313431 4314066 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase complement(4313431..4314066) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219032.1 CDS thiC NC_006905.1 4314066 4315961 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(4314066..4315961) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219033.1 CDS rsd NC_006905.1 4316325 4316813 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(4316325..4316813) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219034.1 CDS nudC NC_006905.1 4316906 4317679 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4316906..4317679 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219035.1 CDS hemE NC_006905.1 4317720 4318784 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4317720..4318784 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219036.1 CDS nfi NC_006905.1 4318794 4319465 D Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 4318794..4319465 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219037.1 CDS yjaG NC_006905.1 4319507 4320097 D hypothetical protein 4319507..4320097 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219038.1 CDS hupA NC_006905.1 4320284 4320556 D histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4320284..4320556 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219039.1 CDS yjaH NC_006905.1 4320568 4321260 D hypothetical protein 4320568..4321260 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219040.1 CDS zraP NC_006905.1 4321302 4321757 R zinc resistance protein complement(4321302..4321757) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219041.1 CDS hydH NC_006905.1 4321744 4323408 D IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensor protein ZraS 4321744..4323408 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219042.1 CDS hydG NC_006905.1 4323414 4324739 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4323414..4324739 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219043.1 CDS purD NC_006905.1 4324776 4326026 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(4324776..4326026) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219046.1 CDS SC4059 NC_006905.1 4333375 4333605 D hypothetical protein 4333375..4333605 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219047.1 CDS yjaB NC_006905.1 4333596 4334033 R hypothetical protein complement(4333596..4334033) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219048.1 CDS metA NC_006905.1 4334190 4335119 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4334190..4335119 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219049.1 CDS aceB NC_006905.1 4335388 4336989 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4335388..4336989 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219050.1 CDS aceA NC_006905.1 4337021 4338325 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 4337021..4338325 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219051.1 CDS aceK NC_006905.1 4338427 4340178 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 4338427..4340178 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219052.1 CDS SC4065 NC_006905.1 4340142 4340576 R hypothetical protein complement(4340142..4340576) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219053.1 CDS iclR NC_006905.1 4340560 4341384 R regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; IclR family transcriptional regulator complement(4340560..4341384) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219054.2 CDS metH NC_006905.1 4341694 4345377 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4341694..4345377 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219056.1 CDS pepE NC_006905.1 4348688 4349377 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(4348688..4349377) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219057.1 CDS SC4070 NC_006905.1 4349449 4349550 D hypothetical protein 4349449..4349550 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219058.1 CDS yaiL NC_006905.1 4349585 4350124 D hypothetical protein 4349585..4350124 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219059.1 CDS yjbC NC_006905.1 4350171 4351040 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4350171..4351040 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219060.1 CDS yjbD NC_006905.1 4351037 4351336 R hypothetical protein complement(4351037..4351336) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219061.1 CDS ybaS NC_006905.1 4351407 4352348 R Na+-dependent transporter complement(4351407..4352348) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219062.1 CDS SC4075 NC_006905.1 4352466 4352621 D hypothetical protein 4352466..4352621 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219063.1 CDS SC4076 NC_006905.1 4352610 4353338 R hypothetical protein complement(4352610..4353338) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219064.1 CDS SC4077 NC_006905.1 4353535 4353885 R inner membrane protein complement(4353535..4353885) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219065.1 CDS SC4078 NC_006905.1 4354076 4354531 R hypothetical protein complement(4354076..4354531) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219066.1 CDS SC4079 NC_006905.1 4354528 4355142 R hypothetical protein complement(4354528..4355142) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219067.1 CDS vph NC_006905.1 4355149 4356807 R IPR000531: TonB-dependent receptor protein; phage tail fiber protein H complement(4355149..4356807) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219068.1 CDS vpi NC_006905.1 4356810 4357442 R phage tail protein complement(4356810..4357442) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219069.1 CDS vbp NC_006905.1 4357435 4358550 R phage baseplate protein complement(4357435..4358550) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219070.1 CDS vbp NC_006905.1 4358541 4358900 R phage baseplate protein complement(4358541..4358900) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219071.1 CDS gtrB NC_006905.1 4360611 4361540 R IPR001173: Glycosyl transferase, family 2; phage glycosyltransferase complement(4360611..4361540) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219072.1 CDS gtrA NC_006905.1 4361537 4361911 R phage glucose translocase complement(4361537..4361911) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219073.1 CDS SC4086 NC_006905.1 4362226 4362948 R phage baseplate component complement(4362226..4362948) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219074.1 CDS SC4087 NC_006905.1 4362958 4364001 R hypothetical protein complement(4362958..4364001) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219075.1 CDS SC4088 NC_006905.1 4363989 4364198 R inner membrane protein complement(4363989..4364198) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219076.1 CDS mac NC_006905.1 4364198 4365151 R methyl-accepting chemotaxis protein complement(4364198..4365151) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219077.1 CDS SC4090 NC_006905.1 4367690 4368007 R similar to orf4 in Pectobacterium carotovorum subsp. carotovorum; hypothetical protein complement(4367690..4368007) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219078.1 CDS vtc NC_006905.1 4368059 4368583 R phage tail core protein complement(4368059..4368583) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219079.1 CDS vts NC_006905.1 4368583 4370010 R IPR007067: Phage tail sheath protein; phage tail sheath protein complement(4368583..4370010) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219080.1 CDS SC4093 NC_006905.1 4370000 4370197 R hypothetical protein complement(4370000..4370197) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219081.1 CDS SC4094 NC_006905.1 4370194 4370649 R hypothetical protein complement(4370194..4370649) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219082.1 CDS SC4095 NC_006905.1 4370808 4371122 R inner membrane protein complement(4370808..4371122) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219083.1 CDS lmt NC_006905.1 4371135 4371740 R soluble lytic murein transglycosylase complement(4371135..4371740) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219084.1 CDS SC4097 NC_006905.1 4371743 4372030 R inner membrane protein complement(4371743..4372030) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219085.1 CDS SC4098 NC_006905.1 4372626 4372952 D hypothetical protein 4372626..4372952 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219086.1 CDS SC4099 NC_006905.1 4373084 4374433 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase complement(4373084..4374433) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219087.1 CDS pgi NC_006905.1 4374778 4376427 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4374778..4376427 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219088.1 CDS yjbE NC_006905.1 4376871 4377113 D hypothetical protein 4376871..4377113 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219089.1 CDS yjbF NC_006905.1 4377147 4377815 D outer membrane lipoprotein 4377147..4377815 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219090.1 CDS yjbG NC_006905.1 4377812 4378549 D hypothetical protein 4377812..4378549 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219091.1 CDS yjbH NC_006905.1 4378549 4380645 D outer membrane lipoprotein 4378549..4380645 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219092.1 CDS yjbA NC_006905.1 4380788 4381198 D phosphate-starvation-inducible protein PsiE 4380788..4381198 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219093.1 CDS malG NC_006905.1 4381364 4382254 R with MalKFE is involved in the transport of maltose into the cell; maltose ABC transporter permease complement(4381364..4382254) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219094.1 CDS malF NC_006905.1 4382269 4383813 R with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein complement(4382269..4383813) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219095.2 CDS malE NC_006905.1 4383945 4385135 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein complement(4383945..4385135) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219096.1 CDS malK NC_006905.1 4385497 4386606 D with malEFG is involved in import of maltose/maltodextrin; maltose ABC transporter ATP-binding protein 4385497..4386606 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219097.1 CDS lamB NC_006905.1 4386695 4388053 D porin involved in the transport of maltose and maltodextrins; maltoporin 4386695..4388053 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219098.1 CDS malM NC_006905.1 4388217 4389134 D maltose regulon periplasmic protein 4388217..4389134 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219099.1 CDS ubiC NC_006905.1 4389315 4389812 D catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4389315..4389812 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219100.1 CDS ubiA NC_006905.1 4389826 4390698 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4389826..4390698 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219101.1 CDS plsB NC_006905.1 4390797 4393217 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4390797..4393217) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219102.1 CDS dgkA NC_006905.1 4393388 4393756 D IPR000829: Prokaryotic diacylglycerol kinase; diacylglycerol kinase 4393388..4393756 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219103.1 CDS lexA NC_006905.1 4393865 4394473 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4393865..4394473 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219104.1 CDS dinF NC_006905.1 4394652 4395977 D DNA-damage-inducible SOS response protein 4394652..4395977 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219105.1 CDS SC4118 NC_006905.1 4395959 4396087 D hypothetical protein 4395959..4396087 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219106.1 CDS yjbJ NC_006905.1 4396106 4396318 D unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4396106..4396318 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219107.1 CDS zur NC_006905.1 4396418 4396933 R Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor complement(4396418..4396933) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219108.1 CDS SC4121 NC_006905.1 4397180 4398490 D hypothetical protein 4397180..4398490 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219109.1 CDS yjbN NC_006905.1 4398578 4399576 D IPR001269: Protein of unknown function UPF0034; tRNA-dihydrouridine synthase A 4398578..4399576 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219110.1 CDS pspG NC_006905.1 4399744 4399986 D coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4399744..4399986 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219111.1 CDS qor NC_006905.1 4400161 4401144 R IPR002364: Quinone oxidoreductase/zeta-crystallin; quinone oxidoreductase complement(4400161..4401144) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219112.1 CDS dnaB NC_006905.1 4401209 4402624 D unwinds double stranded DNA; replicative DNA helicase 4401209..4402624 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219113.1 CDS alr NC_006905.1 4402656 4403735 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4402656..4403735 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219114.2 CDS tyrB NC_006905.1 4403921 4405114 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4403921..4405114 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219115.1 CDS aphA NC_006905.1 4405301 4406014 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4405301..4406014 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219116.1 CDS yjbQ NC_006905.1 4406143 4406559 D IPR001602: Protein of unknown function UPF0047; hypothetical protein 4406143..4406559 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219117.1 CDS yjbR NC_006905.1 4406562 4406918 D hypothetical protein 4406562..4406918 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219118.1 CDS SC4131 NC_006905.1 4406919 4407257 R hypothetical protein complement(4406919..4407257) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219119.1 CDS SC4132 NC_006905.1 4407244 4407699 R outer membrane lipoprotein complement(4407244..4407699) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219120.1 CDS uvrA NC_006905.1 4407831 4410656 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(4407831..4410656) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219121.1 CDS ssb NC_006905.1 4410904 4411434 D binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4410904..4411434 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219122.1 CDS SC4135 NC_006905.1 4411902 4412066 D hypothetical protein 4411902..4412066 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219123.1 CDS SC4136 NC_006905.1 4412474 4413106 D hypothetical protein 4412474..4413106 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219124.1 CDS mac NC_006905.1 4413103 4414491 D methyl-accepting chemotaxis protein 4413103..4414491 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219125.1 CDS SC4138 NC_006905.1 4414481 4415800 D ABC transporter outer membrane protein 4414481..4415800 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219126.1 CDS SC4139 NC_006905.1 4415797 4417074 D IPR003997: Gram-negative bacterial RTX secretion protein D; membrane permease, cation efflux pump 4415797..4417074 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219127.1 CDS SC4140 NC_006905.1 4417091 4433770 D IPR000150: Cof protein; IPR000566: Lipocalin-related protein and Bos/Can/Equ allergen; IPR001220: Legume lectin, beta domain;IPR002126: Cadherin; inner membrane protein 4417091..4433770 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219128.1 CDS SC4141 NC_006905.1 4433810 4435876 D IPR000508: Signal peptidase; IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; bacteriocin/lantibiotic ABC transporter 4433810..4435876 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219129.1 CDS yjcB NC_006905.1 4436154 4436525 R hypothetical protein complement(4436154..4436525) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219130.1 CDS yjcC NC_006905.1 4436977 4438599 D IPR001633: EAL domain; diguanylate cyclase/phosphodiesterase 4436977..4438599 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219131.1 CDS soxS NC_006905.1 4438587 4438910 R regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS complement(4438587..4438910) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219132.1 CDS soxR NC_006905.1 4438997 4439455 D IPR000551: Bacterial regulatory protein, MerR family; redox-sensing transcriptional activator SoxR 4438997..4439455 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219133.1 CDS gth NC_006905.1 4439748 4440416 D IPR004045: Glutathione S-transferase, N-terminal; IPR004046: Glutathione S-transferase, C-terminal; glutathione S-transferase 4439748..4440416 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219134.1 CDS yjcD NC_006905.1 4440763 4442112 D xanthine/uracil permease family protein 4440763..4442112 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219135.1 CDS yjcE NC_006905.1 4442217 4443908 D CPA1 family, Na:H transport protein 4442217..4443908 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219136.1 CDS ywbI NC_006905.1 4444003 4444890 R IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator complement(4444003..4444890) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219137.1 CDS ywbH NC_006905.1 4444994 4445404 D IPR005538: LrgA family; hypothetical protein 4444994..4445404 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219138.1 CDS ywgG NC_006905.1 4445397 4446086 D hypothetical protein 4445397..4446086 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219139.1 CDS actP NC_006905.1 4446125 4447774 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(4446125..4447774) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219140.1 CDS yjcH NC_006905.1 4447771 4448088 R hypothetical protein complement(4447771..4448088) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219141.1 CDS acs NC_006905.1 4448325 4450283 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(4448325..4450283) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219142.1 CDS ecnB NC_006905.1 4450470 4450616 D entericidin B 4450470..4450616 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219143.1 CDS nrfA NC_006905.1 4450715 4452151 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4450715..4452151 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219144.1 CDS nrfB NC_006905.1 4452196 4452762 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 4452196..4452762 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219145.1 CDS nrfC NC_006905.1 4452759 4453430 D IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; nitrite reductase; formate-dependent, Fe-S centers 4452759..4453430 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219146.1 CDS nrfD NC_006905.1 4453427 4454383 D nitrate reductase, formate dependent 4453427..4454383 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219147.1 CDS nrfE NC_006905.1 4454376 4456598 D IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR002541: Cytochrome c assembly protein; IPR003567: Cytochrome c-type biogenesis protein;IPR003568: Cytochrome c-type biogenesis protein CcmF;IPR003570: Cytochrome c-type biogenesis protein NrfE;IPR005616: Cytochrome C biogenesis protein; formate-dependent nitrite reductase 4454376..4456598 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219148.1 CDS nrfG NC_006905.1 4456595 4457215 D IPR001440: TPR repeat; formate-dependent nitrite reductase complex subunit NrfG 4456595..4457215 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219149.1 CDS SC4162 NC_006905.1 4457355 4457483 R hypothetical protein complement(4457355..4457483) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219150.1 CDS gltP NC_006905.1 4457560 4458870 D carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 4457560..4458870 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219151.1 CDS yjcO NC_006905.1 4459028 4459717 R hypothetical protein complement(4459028..4459717) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219152.1 CDS lpxO NC_006905.1 4462396 4463304 R dioxygenase for synthesis of lipid complement(4462396..4463304) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219153.1 CDS phnO NC_006905.1 4463562 4464026 R PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase complement(4463562..4464026) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219154.1 CDS phnB NC_006905.1 4464148 4464591 R IPR004360: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; hypothetical protein complement(4464148..4464591) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219155.1 CDS phnA NC_006905.1 4464711 4465046 R hypothetical protein complement(4464711..4465046) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219156.1 CDS proP NC_006905.1 4465513 4467015 D IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; proline/glycine betaine transporter 4465513..4467015 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219157.1 CDS basS NC_006905.1 4467182 4468261 R IPR003660: Histidine kinase, HAMP region; IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensor protein BasS/PmrB complement(4467182..4468261) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219158.1 CDS basR NC_006905.1 4468262 4468930 R response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR complement(4468262..4468930) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219159.1 CDS yjdB NC_006905.1 4468927 4470570 R with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; cell division protein complement(4468927..4470570) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219160.1 CDS yjdE NC_006905.1 4470704 4472041 R IPR002293: Amino acid/polyamine transporter family I; arginine:agmatin antiporter complement(4470704..4472041) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219161.1 CDS adiY NC_006905.1 4472181 4472942 R IPR000005: Helix-turn-helix, AraC type; transcriptional activator of AdiA complement(4472181..4472942) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219162.1 CDS adi NC_006905.1 4473231 4475501 R catabolic; inducible by acid; IPR000310: Orn/Lys/Arg decarboxylase, major region; IPR005308: Orn/Lys/Arg decarboxylase, N-terminal domain; IPR008286: Orn/Lys/Arg decarboxylase, C-terminal; arginine decarboxylase complement(4473231..4475501) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219163.1 CDS melR NC_006905.1 4475731 4476807 R IPR000005: Helix-turn-helix, AraC type; DNA-binding transcriptional regulator MelR complement(4475731..4476807) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219164.1 CDS melA NC_006905.1 4476932 4478287 D IPR001088: Glycoside hydrolase, family 4; alpha-galactosidase 4476932..4478287 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219165.1 CDS melB NC_006905.1 4478371 4479801 D melibiose:sodium symporter 4478371..4479801 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219166.1 CDS fumB NC_006905.1 4479899 4481545 R IPR000362: Fumarate lyase; IPR004646: Fe-S type hydro-lyases tartrate/fumarate alpha region; IPR004647: Fe-S type hydro-lyases tartrate/fumarate beta region; fumarase B (fumarate hydratase class I), anaerobic isozyme complement(4479899..4481545) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219167.1 CDS dcuB NC_006905.1 4481641 4482981 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter complement(4481641..4482981) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219168.1 CDS dcuR NC_006905.1 4483711 4484430 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR complement(4483711..4484430) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219169.1 CDS dcuS NC_006905.1 4484427 4486058 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS complement(4484427..4486058) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219170.1 CDS dmsA NC_006905.1 4486433 4488862 D IPR006655: Prokaryotic molybdopterin oxidoreductase; anaerobic dimethyl sulfoxide reductase subunit A 4486433..4488862 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219171.1 CDS dmsB NC_006905.1 4488876 4489502 D IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; anaerobic dimethyl sulfoxide reductase subunit B 4488876..4489502 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219172.1 CDS SC4185 NC_006905.1 4489495 4490268 D anaerobic dimethyl sulfoxide reductase subunit C 4489495..4490268 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219173.1 CDS ynfI NC_006905.1 4490284 4490937 D hypothetical protein 4490284..4490937 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219174.1 CDS SC4187 NC_006905.1 4491021 4492421 R hypothetical protein complement(4491021..4492421) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219175.1 CDS yjiK NC_006905.1 4492725 4493630 D hypothetical protein 4492725..4493630 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219176.1 CDS SC4189 NC_006905.1 4494144 4494533 R hypothetical protein complement(4494144..4494533) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219177.1 CDS SC4190 NC_006905.1 4494556 4494843 R IPR000792: Bacterial regulatory protein, LuxR family; LuxR family transcriptional regulator complement(4494556..4494843) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219178.1 CDS hilD NC_006905.1 4494840 4495715 R IPR000005: Helix-turn-helix, AraC type; DNA-binding domain-containing protein complement(4494840..4495715) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219179.1 CDS SC4192 NC_006905.1 4495981 4496202 R hypothetical protein complement(4495981..4496202) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219180.1 CDS insF NC_006905.1 4496512 4496820 D transposase insF 4496512..4496820 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219181.1 CDS SC4194 NC_006905.1 4497385 4497585 D hypothetical protein 4497385..4497585 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219182.1 CDS yggM NC_006905.1 4497554 4498540 D hypothetical protein 4497554..4498540 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219183.1 CDS TnpA NC_006905.1 4498629 4498808 R hypothetical protein complement(4498629..4498808) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219184.1 CDS phoN NC_006905.1 4499817 4500569 R IPR000326: PA-phosphatase related phosphoesterase; IPR001011: Bacterial acid phosphatase, class A; IPR002048: Calcium-binding EF-hand; non-specific acid phosphatase complement(4499817..4500569) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219185.1 CDS ompX NC_006905.1 4500612 4500746 R ail and ompX-like protein complement(4500612..4500746) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219186.1 CDS SC4199 NC_006905.1 4500968 4501111 D hypothetical protein 4500968..4501111 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219187.1 CDS yjdC NC_006905.1 4501471 4502046 R transcriptional regulator complement(4501471..4502046) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219188.1 CDS dipZ NC_006905.1 4502083 4503786 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(4502083..4503786) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219189.1 CDS cutA NC_006905.1 4503762 4504109 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA complement(4503762..4504109) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219190.1 CDS dcuA NC_006905.1 4504230 4505531 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(4504230..4505531) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219191.1 CDS aspA NC_006905.1 4505646 4507082 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(4505646..4507082) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219192.1 CDS SC4205 NC_006905.1 4507115 4507237 R hypothetical protein complement(4507115..4507237) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219193.1 CDS fxsA NC_006905.1 4507423 4507899 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4507423..4507899 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219194.1 CDS yjeH NC_006905.1 4507958 4509199 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; hypothetical protein complement(4507958..4509199) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219195.2 CDS groES NC_006905.1 4509475 4509768 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4509475..4509768 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219196.1 CDS groEL NC_006905.1 4509812 4511458 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 4509812..4511458 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219197.1 CDS yjeI NC_006905.1 4511684 4512055 D hypothetical protein 4511684..4512055 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219198.1 CDS yjeJ NC_006905.1 4512103 4512960 R hypothetical protein complement(4512103..4512960) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219199.1 CDS yjeK NC_006905.1 4513242 4514270 R hypothetical protein complement(4513242..4514270) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219200.2 CDS efp NC_006905.1 4514311 4514877 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4514311..4514877 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219201.1 CDS ecnA NC_006905.1 4514881 4515072 D entericidin A 4514881..4515072 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219202.1 CDS SC4215 NC_006905.1 4515180 4515326 D entericidin B 4515180..4515326 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219203.1 CDS ecnR NC_006905.1 4515357 4516001 R IPR000792: Bacterial regulatory protein, LuxR family; LuxR family transcriptional regulator complement(4515357..4516001) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219204.1 CDS sugE NC_006905.1 4516200 4516517 D member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; quaternary ammonium compound-resistance protein SugE 4516200..4516517 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219205.1 CDS blc NC_006905.1 4516534 4517067 R lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc complement(4516534..4517067) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219206.1 CDS frdD NC_006905.1 4517179 4517538 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(4517179..4517538) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219207.1 CDS frdC NC_006905.1 4517549 4517944 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C complement(4517549..4517944) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219208.1 CDS frdB NC_006905.1 4517955 4518689 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(4517955..4518689) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219209.2 CDS frdA NC_006905.1 4518682 4520472 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(4518682..4520472) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219210.1 CDS yjeA NC_006905.1 4520795 4521772 D lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4520795..4521772 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219211.1 CDS yjeM NC_006905.1 4521998 4523500 D IPR002293: Amino acid/polyamine transporter family I; IPR004841: Amino acid permease-associated region; amino acid APC transporter 4521998..4523500 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219212.1 CDS yjeO NC_006905.1 4523552 4523866 D inner membrane protein 4523552..4523866 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219213.1 CDS yjeP NC_006905.1 4523933 4527259 R IPR006686: Mechanosensitive (MS) ion channel subdomain; hypothetical protein complement(4523933..4527259) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219214.1 CDS psd NC_006905.1 4527278 4528246 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(4527278..4528246) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219215.2 CDS yjeQ NC_006905.1 4528338 4529390 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(4528338..4529390) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219216.1 CDS orn NC_006905.1 4529497 4530042 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4529497..4530042 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219217.1 CDS artJ NC_006905.1 4530104 4530823 R IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; arginine-binding periplasmic protein complement(4530104..4530823) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219218.1 CDS yjeS NC_006905.1 4531928 4533115 R IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; Fe-S protein complement(4531928..4533115) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219219.1 CDS yjeF NC_006905.1 4533066 4534613 D IPR000631: Protein of unknown function UPF0031; IPR000875: Cecropin; hypothetical protein 4533066..4534613 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219220.1 CDS yjeE NC_006905.1 4534585 4535046 D possibly involved in cell wall synthesis; ATPase 4534585..4535046 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219221.1 CDS amiB NC_006905.1 4535063 4536385 D N-acetylmuramoyl-L-alanine amidase 4535063..4536385 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219222.1 CDS mutL NC_006905.1 4536395 4538251 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4536395..4538251 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219223.1 CDS miaA NC_006905.1 4538244 4539194 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4538244..4539194 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219224.1 CDS hfq NC_006905.1 4539277 4539585 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4539277..4539585 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219225.1 CDS hflX NC_006905.1 4539657 4540937 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4539657..4540937 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219226.1 CDS hflK NC_006905.1 4541152 4542411 D with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4541152..4542411 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219227.1 CDS hflC NC_006905.1 4542414 4543418 D with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4542414..4543418 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219228.1 CDS yjeT NC_006905.1 4543497 4543694 D inner membrane protein 4543497..4543694 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219229.1 CDS purA NC_006905.1 4543797 4545095 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4543797..4545095 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219230.2 CDS yjeB NC_006905.1 4545302 4545727 D negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4545302..4545727 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219231.1 CDS vacB NC_006905.1 4545765 4548203 D 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 4545765..4548203 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219232.1 CDS yjfH NC_006905.1 4548294 4549025 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4548294..4549025 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219233.1 CDS yjfI NC_006905.1 4549157 4549561 D hypothetical protein 4549157..4549561 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219234.1 CDS SC4247 NC_006905.1 4550233 4551336 D IPR001622: K+ channel, pore region; resembles potassium channels 4550233..4551336 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219235.1 CDS yjfK NC_006905.1 4551309 4551992 D hypothetical protein 4551309..4551992 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219236.1 CDS yjfL NC_006905.1 4552010 4552408 D inner membrane protein 4552010..4552408 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219237.1 CDS yjfM NC_006905.1 4552418 4553056 D inner membrane protein 4552418..4553056 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219238.2 CDS aidB NC_006905.1 4554289 4555929 D catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4554289..4555929 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219239.1 CDS yjfN NC_006905.1 4555974 4556249 R hypothetical protein complement(4555974..4556249) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219240.1 CDS yjfO NC_006905.1 4556380 4556709 R in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; biofilm stress and motility protein A complement(4556380..4556709) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219241.1 CDS yjfP NC_006905.1 4556893 4557642 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4556893..4557642 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219242.1 CDS yjfQ NC_006905.1 4557639 4558394 R negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR complement(4557639..4558394) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219243.2 CDS yjfR NC_006905.1 4558499 4559563 R L-ascorbate 6-phosphate lactonase complement(4558499..4559563) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219244.2 CDS ulaA NC_006905.1 4559925 4561322 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4559925..4561322 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219245.1 CDS sgaB NC_006905.1 4561338 4561643 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4561338..4561643 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219246.1 CDS ptxA NC_006905.1 4561653 4562117 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4561653..4562117 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219247.2 CDS ulaD NC_006905.1 4562131 4562781 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4562131..4562781 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219248.1 CDS sgaU NC_006905.1 4562791 4563645 D UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4562791..4563645 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219249.1 CDS sgaE NC_006905.1 4563645 4564331 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4563645..4564331 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219250.1 CDS yjfY NC_006905.1 4564460 4564735 R hypothetical protein complement(4564460..4564735) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219251.1 CDS SC4264 NC_006905.1 4564929 4565135 D hypothetical protein 4564929..4565135 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219252.1 CDS rpsF NC_006905.1 4565206 4565601 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4565206..4565601 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219253.1 CDS priB NC_006905.1 4565608 4565922 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4565608..4565922 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219254.1 CDS rpsR NC_006905.1 4565927 4566154 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4565927..4566154 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219255.1 CDS rplI NC_006905.1 4566196 4566645 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4566196..4566645 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219256.1 CDS yifZ NC_006905.1 4566793 4567719 D hypothetical protein 4566793..4567719 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219257.1 CDS ytfB NC_006905.1 4567769 4568404 R hypothetical protein complement(4567769..4568404) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219258.2 CDS fklB NC_006905.1 4568624 4569244 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4568624..4569244 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219259.1 CDS cycA NC_006905.1 4569540 4570943 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 4569540..4570943 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219260.1 CDS SC4273 NC_006905.1 4571281 4572420 D hypothetical protein 4571281..4572420 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219261.1 CDS SC4274 NC_006905.1 4572435 4573823 D hypothetical protein 4572435..4573823 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219262.1 CDS ytfE NC_006905.1 4573890 4574552 R Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein complement(4573890..4574552) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219263.1 CDS ytfF NC_006905.1 4574655 4575620 R hypothetical protein complement(4574655..4575620) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219264.1 CDS ytfH NC_006905.1 4576636 4577022 D IPR002577: Protein of unknown function DUF24; hypothetical protein 4576636..4577022 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219265.1 CDS cpdB NC_006905.1 4577080 4579023 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmicprotein complement(4577080..4579023) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219266.1 CDS cysQ NC_006905.1 4579291 4580031 D catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; adenosine-3'(2'),5'-bisphosphate nucleotidase 4579291..4580031 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219267.1 CDS ytfJ NC_006905.1 4580021 4580578 R hypothetical protein complement(4580021..4580578) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219268.1 CDS ytfK NC_006905.1 4580839 4581111 D hypothetical protein 4580839..4581111 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219269.1 CDS ytfL NC_006905.1 4581195 4582538 R IPR000644: CBS domain; hypothetical protein complement(4581195..4582538) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219270.1 CDS msrA NC_006905.1 4582721 4583359 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4582721..4583359) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219271.1 CDS ytfM NC_006905.1 4583572 4585305 D IPR000566: Lipocalin-related protein and Bos/Can/Equ allergen; hypothetical protein 4583572..4585305 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219272.1 CDS ytfN NC_006905.1 4585302 4589081 D IPR000566: Lipocalin-related protein and Bos/Can/Equ allergen; hypothetical protein 4585302..4589081 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219273.1 CDS ytfP NC_006905.1 4589084 4589428 D hypothetical protein 4589084..4589428 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219274.1 CDS gudP NC_006905.1 4589482 4590690 R IPR007114: Major facilitator superfamily; pemease complement(4589482..4590690) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219275.1 CDS ppa NC_006905.1 4592259 4592789 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(4592259..4592789) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219276.1 CDS fbp NC_006905.1 4593016 4594014 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(4593016..4594014) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219277.1 CDS mpl NC_006905.1 4594189 4595562 D IPR000713: Cytoplasmic peptidoglycan synthetases, N-terminal; IPR004101: Cytoplasmic peptidoglycan synthetases, C-terminal; IPR005757: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4594189..4595562 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219278.1 CDS yjgA NC_006905.1 4595669 4596220 R hypothetical protein complement(4595669..4596220) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219279.2 CDS pmbA NC_006905.1 4596316 4597668 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4596316..4597668 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219280.1 CDS cybC NC_006905.1 4597767 4598153 D cytochrome b(562) 4597767..4598153 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219281.1 CDS SC4294 NC_006905.1 4598157 4598312 D hypothetical protein 4598157..4598312 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219282.1 CDS SC4295 NC_006905.1 4598450 4598779 D hypothetical protein 4598450..4598779 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219283.1 CDS SC4296 NC_006905.1 4598790 4599152 D hypothetical protein 4598790..4599152 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219284.1 CDS SC4297 NC_006905.1 4599128 4599454 D hypothetical protein 4599128..4599454 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219285.1 CDS SC4298 NC_006905.1 4599477 4600253 D inner membrane protein 4599477..4600253 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219286.1 CDS SC4299 NC_006905.1 4600265 4600909 D inner membrane protein 4600265..4600909 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219287.1 CDS dho NC_006905.1 4600968 4602101 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4600968..4602101 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219288.1 CDS mlr NC_006905.1 4602085 4603203 D selenocysteine synthase [L-seryl-tRNA(Ser) selenium transferase 4602085..4603203 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219289.1 CDS SC4302 NC_006905.1 4603200 4603940 D hypothetical protein 4603200..4603940 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219290.1 CDS licR NC_006905.1 4603996 4605846 D IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system mannitol/fructose-specific IIA component 4603996..4605846 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219291.1 CDS relB NC_006905.1 4605958 4606200 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4605958..4606200 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219292.1 CDS relE NC_006905.1 4606190 4606474 D inner membrane protein 4606190..4606474 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219293.1 CDS nrdG NC_006905.1 4606478 4606942 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(4606478..4606942) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219294.1 CDS nrdD NC_006905.1 4607159 4609297 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(4607159..4609297) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219295.1 CDS SC4308 NC_006905.1 4609502 4609672 D hypothetical protein 4609502..4609672 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219296.1 CDS treC NC_006905.1 4609747 4611354 R trehalose-6-phosphate hydrolase complement(4609747..4611354) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219297.1 CDS pttB NC_006905.1 4611404 4612723 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunit IIBC complement(4611404..4612723) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219298.1 CDS treR NC_006905.1 4612861 4613808 R regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor complement(4612861..4613808) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219299.1 CDS mgtA NC_006905.1 4614192 4616900 D P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4614192..4616900 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219300.1 CDS yjgF NC_006905.1 4616986 4617372 R IPR006056: YjgF-like protein; hypothetical protein complement(4616986..4617372) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219301.1 CDS pyrI NC_006905.1 4617449 4617910 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(4617449..4617910) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219302.1 CDS pyrB NC_006905.1 4617923 4618858 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(4617923..4618858) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219303.1 CDS yjgG NC_006905.1 4618975 4619115 D hypothetical protein 4618975..4619115 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219304.1 CDS agrR NC_006905.1 4619085 4619573 R IPR001669: Arginine repressor; arginine repressor complement(4619085..4619573) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219305.1 CDS yfcC NC_006905.1 4619760 4621163 R hypothetical protein complement(4619760..4621163) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219306.1 CDS otcC NC_006905.1 4621219 4622223 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(4621219..4622223) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219307.1 CDS arcC NC_006905.1 4622335 4623267 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(4622335..4623267) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219308.1 CDS adi NC_006905.1 4623278 4624501 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(4623278..4624501) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219309.1 CDS SC4322 NC_006905.1 4624599 4624790 D hypothetical protein 4624599..4624790 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219310.1 CDS yjgK NC_006905.1 4625174 4625626 D hypothetical protein 4625174..4625626 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219311.1 CDS argI NC_006905.1 4625700 4626704 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I complement(4625700..4626704) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219312.1 CDS yjgD NC_006905.1 4626870 4627286 D hypothetical protein 4626870..4627286 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219313.1 CDS miaE NC_006905.1 4627298 4628110 D hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA 4627298..4628110 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219314.1 CDS SC4327 NC_006905.1 4628143 4628265 R hypothetical protein complement(4628143..4628265) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219315.1 CDS ytgA NC_006905.1 4628344 4628832 R inner membrane protein complement(4628344..4628832) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219316.1 CDS yjgM NC_006905.1 4628939 4629454 R acetyltransferase complement(4628939..4629454) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219317.1 CDS yjgN NC_006905.1 4629637 4630824 D inner membrane protein 4629637..4630824 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219318.1 CDS valS NC_006905.1 4630966 4633821 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(4630966..4633821) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219319.1 CDS holC NC_006905.1 4633821 4634264 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(4633821..4634264) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219320.1 CDS pepA NC_006905.1 4634402 4635913 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(4634402..4635913) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219321.1 CDS SC4334 NC_006905.1 4635957 4636076 R hypothetical protein complement(4635957..4636076) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219322.1 CDS yjgP NC_006905.1 4636308 4637408 D IPR005495: Predicted permease YjgP/YjgQ family; permease 4636308..4637408 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219323.1 CDS yjgQ NC_006905.1 4637408 4638490 D permease 4637408..4638490 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219324.1 CDS idnR NC_006905.1 4638707 4639705 R IPR000843: Bacterial regulatory protein LacI, HTH motif; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; L-idonate regulator complement(4638707..4639705) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219325.1 CDS idnT NC_006905.1 4639769 4641202 R GntP family, L-idonate transport protein complement(4639769..4641202) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219326.1 CDS idnO NC_006905.1 4641150 4641914 R Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase complement(4641150..4641914) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219327.1 CDS idnD NC_006905.1 4641939 4642970 R NAD-binding; L-idonate 5-dehydrogenase complement(4641939..4642970) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219328.1 CDS idnK NC_006905.1 4643187 4643717 D D-gluconate kinase 4643187..4643717 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219329.1 CDS yjgB NC_006905.1 4643745 4644764 R IPR000345: Cytochrome c heme-binding site; IPR002328: Zinc-containing alcohol dehydrogenase; IPR006140: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; alcohol dehydrogenase complement(4643745..4644764) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219330.1 CDS SC4343 NC_006905.1 4646619 4647488 D hypothetical protein 4646619..4647488 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219331.1 CDS SC4344 NC_006905.1 4648534 4648704 D hypothetical protein 4648534..4648704 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219332.1 CDS SC4345 NC_006905.1 4648993 4649364 R replication protein complement(4648993..4649364) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219333.1 CDS SC4346 NC_006905.1 4649947 4650324 D hypothetical protein 4649947..4650324 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219334.1 CDS SC4347 NC_006905.1 4650642 4651313 R hypothetical protein complement(4650642..4651313) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219335.1 CDS SC4348 NC_006905.1 4651600 4651851 R hypothetical protein complement(4651600..4651851) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219336.1 CDS SC4349 NC_006905.1 4652038 4652868 R hypothetical protein complement(4652038..4652868) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219337.1 CDS SC4350 NC_006905.1 4653805 4654170 R hypothetical protein complement(4653805..4654170) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219338.1 CDS mta NC_006905.1 4654491 4655762 D hypothetical protein 4654491..4655762 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219339.1 CDS SC4352 NC_006905.1 4655773 4657860 D IPR001687: ATP/GTP-binding site motif A (P-loop); hypothetical protein 4655773..4657860 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219340.1 CDS SC4353 NC_006905.1 4658481 4659503 D hypothetical protein 4658481..4659503 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219341.1 CDS SC4354 NC_006905.1 4660161 4661036 D hypothetical protein 4660161..4661036 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219342.2 CDS yeeN NC_006905.1 4661514 4662230 R IPR002876: Protein of unknown function DUF28; hypothetical protein complement(4661514..4662230) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219343.1 CDS yjhP NC_006905.1 4662789 4664420 R IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase; SAM-dependent methyltransferase complement(4662789..4664420) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219344.1 CDS SC4357 NC_006905.1 4664425 4664682 R hypothetical protein complement(4664425..4664682) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219345.1 CDS SC4358 NC_006905.1 4665170 4665778 D hypothetical protein 4665170..4665778 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219346.1 CDS iicA NC_006905.1 4666132 4667043 D hypothetical protein 4666132..4667043 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219347.1 CDS SC4360 NC_006905.1 4667248 4667709 D IPR005180: Protein of unknown function DUF302; hypothetical protein 4667248..4667709 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219348.1 CDS yczH NC_006905.1 4667706 4668380 R IPR008262: Lipase, active site; hypothetical protein complement(4667706..4668380) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219349.1 CDS uxuR NC_006905.1 4668730 4669503 D regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4668730..4669503 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219350.1 CDS trpS2 NC_006905.1 4669504 4670517 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(4669504..4670517) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219351.1 CDS SC4364 NC_006905.1 4670814 4670966 D hypothetical protein 4670814..4670966 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219352.1 CDS pnl NC_006905.1 4672005 4672739 D IPR001920: Asp/Glu racemase; IPR004380: Aspartate racemase; aspartate racemase 4672005..4672739 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219353.1 CDS yjiE NC_006905.1 4672745 4673653 R IPR000847: Bacterial regulatory protein LysR, HTH motif; DNA-binding transcriptional regulator complement(4672745..4673653) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219354.1 CDS iadA NC_006905.1 4673772 4674944 R IPR003764: N-acetylglucosamine-6-phosphate deacetylase; IPR005847: Dihydroorotase region; isoaspartyl dipeptidase complement(4673772..4674944) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219355.1 CDS yjiG NC_006905.1 4674957 4675418 R hypothetical protein complement(4674957..4675418) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219356.1 CDS yjiH NC_006905.1 4675415 4676086 R hypothetical protein complement(4675415..4676086) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219357.1 CDS yjiJ NC_006905.1 4676958 4678142 R hypothetical protein complement(4676958..4678142) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219358.1 CDS yjiN NC_006905.1 4678362 4679633 R hypothetical protein complement(4678362..4679633) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219359.1 CDS yjiO NC_006905.1 4679720 4680961 R IPR000634: Serine/threonine dehydratase, pyridoxal-phosphate-binding site; IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; MFS family transporter complement(4679720..4680961) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219360.1 CDS yfcI NC_006905.1 4681440 4682270 D hypothetical protein 4681440..4682270 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219361.1 CDS yis2 NC_006905.1 4682267 4682950 R integrase complement(4682267..4682950) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219362.1 CDS SC4375 NC_006905.1 4683121 4683522 R hypothetical protein complement(4683121..4683522) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219363.1 CDS SC4376 NC_006905.1 4685367 4685510 R hypothetical protein complement(4685367..4685510) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219364.1 CDS yjiS NC_006905.1 4685477 4685641 D hypothetical protein 4685477..4685641 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219365.1 CDS SC4378 NC_006905.1 4685716 4686417 R inner membrane protein complement(4685716..4686417) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219366.1 CDS yjiW NC_006905.1 4686491 4686823 R involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE complement(4686491..4686823) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219367.1 CDS lysE NC_006905.1 4687148 4687789 R IPR001123: Lysine exporter protein (LYSE/YGGA); amino acid transporter LysE complement(4687148..4687789) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219368.1 CDS SC4381 NC_006905.1 4687837 4688652 R IPR000005: Helix-turn-helix, AraC type; IPR007113: Cupin domain; hypothetical protein complement(4687837..4688652) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219369.1 CDS yjiA NC_006905.1 4688690 4689646 R GTP-binding protein YjiA complement(4688690..4689646) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219370.1 CDS yjiX NC_006905.1 4689657 4689860 R hypothetical protein complement(4689657..4689860) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219371.1 CDS yjiY NC_006905.1 4689955 4692105 R IPR003706: Carbon starvation protein CstA; carbon starvation protein complement(4689955..4692105) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219372.1 CDS tsr NC_006905.1 4692472 4694133 D IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein;IPR004091: Aspartate chemoreceptor protein; methyl-accepting chemotaxis protein I, serine sensor receptor 4692472..4694133 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219373.1 CDS SC4386 NC_006905.1 4694245 4694463 R hypothetical protein complement(4694245..4694463) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219374.1 CDS SC4387 NC_006905.1 4697202 4697666 D PTS permease 4697202..4697666 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219375.1 CDS ptrB NC_006905.1 4697681 4698142 D IPR004720: PTS system sorbose subfamily IIB component; PTS permease 4697681..4698142 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219376.1 CDS ptnC NC_006905.1 4698168 4698947 D PTS permease 4698168..4698947 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219377.1 CDS ptnD NC_006905.1 4698925 4699773 D PTS permease 4698925..4699773 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219378.1 CDS glmS NC_006905.1 4699786 4700847 D glucosamine-fructose-6-phosphate aminotransferase 4699786..4700847 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219379.1 CDS SC4392 NC_006905.1 4700865 4701875 D glucosamine-fructose-6-phosphate aminotransferase 4700865..4701875 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219380.1 CDS mdoB NC_006905.1 4702009 4704300 R catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I complement(4702009..4704300) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219381.1 CDS yjjA NC_006905.1 4704583 4705044 R hypothetical protein complement(4704583..4705044) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219382.1 CDS dnaC NC_006905.1 4705102 4705839 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(4705102..4705839) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219383.1 CDS dnaT NC_006905.1 4705842 4706381 R This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein DnaI complement(4705842..4706381) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219384.1 CDS yjjB NC_006905.1 4706474 4706947 R hypothetical protein complement(4706474..4706947) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219385.1 CDS yjjP NC_006905.1 4706938 4707882 R hypothetical protein complement(4706938..4707882) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219386.1 CDS SC4399 NC_006905.1 4707896 4708051 R hypothetical protein complement(4707896..4708051) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219387.2 CDS bglJ NC_006905.1 4709163 4709786 D regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4709163..4709786 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219388.1 CDS SC4401 NC_006905.1 4709837 4710295 R hypothetical protein complement(4709837..4710295) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219389.1 CDS fhuF NC_006905.1 4710446 4711234 R ferric hydroximate transport ferric iron reductase complement(4710446..4711234) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219390.1 CDS yhcK NC_006905.1 4711355 4712419 R IPR000160: GGDEF; diguanylate cyclase/phosphodiesterase domain-containing protein complement(4711355..4712419) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219391.1 CDS yjjZ NC_006905.1 4712631 4712906 D hypothetical protein 4712631..4712906 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219392.1 CDS rsmC NC_006905.1 4713447 4714475 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(4713447..4714475) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219393.2 CDS rimI NC_006905.1 4714960 4715406 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 4714960..4715406 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219394.1 CDS yjjG NC_006905.1 4715425 4716105 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4715425..4716105 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219395.1 CDS prfC NC_006905.1 4716197 4717786 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4716197..4717786 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219396.1 CDS osmY NC_006905.1 4718188 4718805 D IPR007055: Transport-associated domain; hypothetical protein 4718188..4718805 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219397.1 CDS SC4410 NC_006905.1 4718934 4719095 D hypothetical protein 4718934..4719095 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219398.1 CDS yjjU NC_006905.1 4719219 4720292 D hypothetical protein 4719219..4720292 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219399.1 CDS yjjV NC_006905.1 4720289 4721062 D IPR001130: TatD-related deoxyribonuclease; deoxyribonuclease YjjV 4720289..4721062 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219400.1 CDS yjjW NC_006905.1 4721095 4721958 R IPR000345: Cytochrome c heme-binding site; IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; IPR001989: Radical-activating enzyme; pyruvate formate lyase activating enzyme complement(4721095..4721958) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219401.1 CDS yjjI NC_006905.1 4721930 4723480 R hypothetical protein complement(4721930..4723480) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219402.1 CDS deoC NC_006905.1 4723722 4724519 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4723722..4724519 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219403.2 CDS deoA NC_006905.1 4724643 4725965 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 4724643..4725965 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219404.1 CDS deoB NC_006905.1 4726017 4727240 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4726017..4727240 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219405.1 CDS deoD NC_006905.1 4727450 4728169 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4727450..4728169 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219406.1 CDS yjjJ NC_006905.1 4728366 4729676 D hypothetical protein 4728366..4729676 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219407.1 CDS lplA NC_006905.1 4729681 4730697 R Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A complement(4729681..4730697) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219408.1 CDS smp NC_006905.1 4730731 4731375 R hypothetical protein complement(4730731..4731375) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219409.1 CDS smp NC_006905.1 4731343 4731492 D phosphoserine phosphatase 4731343..4731492 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219410.1 CDS serB NC_006905.1 4731492 4732460 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4731492..4732460 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219411.1 CDS radA NC_006905.1 4732544 4733926 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4732544..4733926 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219412.1 CDS nadR NC_006905.1 4734077 4735309 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4734077..4735309 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219413.1 CDS yjjK NC_006905.1 4735427 4737094 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(4735427..4737094) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219414.2 CDS slt NC_006905.1 4737303 4739240 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4737303..4739240 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219415.1 CDS trpR NC_006905.1 4739298 4739624 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4739298..4739624 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219416.1 CDS yjjX NC_006905.1 4739726 4740241 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(4739726..4740241) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219417.1 CDS gpmB NC_006905.1 4740290 4740937 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4740290..4740937 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219418.1 CDS rob NC_006905.1 4740934 4741803 R IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator complement(4740934..4741803) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219419.1 CDS creA NC_006905.1 4742015 4742488 D hypothetical protein 4742015..4742488 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219420.1 CDS creB NC_006905.1 4742501 4743190 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4742501..4743190 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219421.1 CDS creC NC_006905.1 4743190 4744614 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4743190..4744614 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219422.1 CDS creD NC_006905.1 4744672 4746021 D IPR000531: TonB-dependent receptor protein; hypothetical protein 4744672..4746021 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219423.1 CDS sthE NC_006905.1 4746079 4747164 R major fimbrial subunit complement(4746079..4747164) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219424.1 CDS sthD NC_006905.1 4747205 4747762 R fimbrial subunit complement(4747205..4747762) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219425.1 CDS sthB NC_006905.1 4747780 4750317 R IPR000015: Fimbrial biogenesis outer membrane usher protein; IPR001064: Beta and gamma crystallin; fimbrial usher protein complement(4747780..4750317) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219426.1 CDS sthA NC_006905.1 4750363 4751046 R IPR001829: Bacterial pili assembly chaperone; fimbrial chaperone protein complement(4750363..4751046) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219427.1 CDS fimF NC_006905.1 4751117 4751662 R fimbrial chaperone protein complement(4751117..4751662) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219428.1 CDS SC4441 NC_006905.1 4752001 4752672 R inner membrane protein complement(4752001..4752672) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219429.1 CDS SC4442 NC_006905.1 4753057 4753371 R hypothetical protein complement(4753057..4753371) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219430.1 CDS arcA NC_006905.1 4753638 4754354 R IPR001789: Response regulator receiver; IPR001867: Transcriptional regulatory protein, C terminal; two-component response regulator complement(4753638..4754354) Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219431.1 CDS yjjY NC_006905.1 4754450 4754590 D inner membrane protein 4754450..4754590 Salmonella enterica subsp. enterica serovar Choleraesuis str. YP_219432.1 CDS lasT NC_006905.1 4754990 4755676 D member of the SPOUT superfamily of methyltransferases; RNA methyltransferase 4754990..4755676 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA1 tRNA SCTRNA1 NC_006905.1 286782 286858 D tRNA-Ile 286782..286858 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA2 tRNA SCTRNA2 NC_006905.1 286968 287043 D tRNA-Ala 286968..287043 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA3 tRNA SCTRNA3 NC_006905.1 290736 290812 D tRNA-Asp 290736..290812 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA4 tRNA SCTRNA4 NC_006905.1 300176 300252 D tRNA-Asp 300176..300252 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA5 tRNA SCTRNA5 NC_006905.1 372757 372832 D tRNA-Thr 372757..372832 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA6 tRNA SCTRNA6 NC_006905.1 390965 391039 D tRNA-Asn 390965..391039 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA7 tRNA SCTRNA7 NC_006905.1 391045 391120 D tRNA-Thr 391045..391120 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA8 tRNA SCTRNA8 NC_006905.1 659248 659324 D tRNA-Arg 659248..659324 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA9 tRNA SCTRNA9 NC_006905.1 779895 779969 R tRNA-Gln complement(779895..779969) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA10 tRNA SCTRNA10 NC_006905.1 780013 780087 R tRNA-Gln complement(780013..780087) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA11 tRNA SCTRNA11 NC_006905.1 780134 780210 R tRNA-Met complement(780134..780210) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA12 tRNA SCTRNA12 NC_006905.1 780226 780300 R tRNA-Gln complement(780226..780300) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA13 tRNA SCTRNA13 NC_006905.1 780336 780410 R tRNA-Gln complement(780336..780410) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA14 tRNA SCTRNA14 NC_006905.1 780434 780518 R tRNA-Leu complement(780434..780518) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA15 tRNA SCTRNA15 NC_006905.1 780527 780603 R tRNA-Met complement(780527..780603) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA16 tRNA SCTRNA16 NC_006905.1 847792 847867 D tRNA-Lys 847792..847867 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA17 tRNA SCTRNA17 NC_006905.1 848004 848079 D tRNA-Val 848004..848079 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA18 tRNA SCTRNA18 NC_006905.1 848083 848158 D tRNA-Lys 848083..848158 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA19 tRNA SCTRNA19 NC_006905.1 848298 848373 D tRNA-Lys 848298..848373 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA20 tRNA SCTRNA20 NC_006905.1 848508 848583 D tRNA-Lys 848508..848583 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA21 tRNA SCTRNA21 NC_006905.1 1011374 1011461 R tRNA-Ser complement(1011374..1011461) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA22 tRNA SCTRNA22 NC_006905.1 1155936 1156023 D tRNA-Ser 1155936..1156023 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA23 tRNA SCTRNA23 NC_006905.1 1204828 1204915 R tRNA-Ser complement(1204828..1204915) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA24 tRNA SCTRNA24 NC_006905.1 1364833 1364909 D tRNA-Arg 1364833..1364909 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA25 tRNA SCTRNA25 NC_006905.1 1377276 1377352 D tRNA-Arg 1377276..1377352 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA26 tRNA SCTRNA26 NC_006905.1 1539335 1539411 R tRNA-Val complement(1539335..1539411) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA27 tRNA SCTRNA27 NC_006905.1 1539422 1539498 R tRNA-Val complement(1539422..1539498) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA28 tRNA SCTRNA28 NC_006905.1 1865694 1865778 D tRNA-Tyr 1865694..1865778 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA29 tRNA SCTRNA29 NC_006905.1 1865996 1866080 D tRNA-Tyr 1865996..1866080 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA30 tRNA SCTRNA30 NC_006905.1 2057826 2057912 R tRNA-Leu complement(2057826..2057912) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA31 tRNA SCTRNA31 NC_006905.1 2057924 2057997 R tRNA-Cys complement(2057924..2057997) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA32 tRNA SCTRNA32 NC_006905.1 2058050 2058125 R tRNA-Gly complement(2058050..2058125) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA33 tRNA SCTRNA33 NC_006905.1 2103908 2103997 R tRNA-Ser complement(2103908..2103997) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA34 tRNA SCTRNA34 NC_006905.1 2104984 2105059 D tRNA-Asn 2104984..2105059 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA35 tRNA SCTRNA35 NC_006905.1 2105954 2106029 D tRNA-Asn 2105954..2106029 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA36 tRNA SCTRNA36 NC_006905.1 2115901 2115976 R tRNA-Asn complement(2115901..2115976) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA37 tRNA SCTRNA37 NC_006905.1 2117734 2117809 D tRNA-Asn 2117734..2117809 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA38 tRNA SCTRNA38 NC_006905.1 2354604 2354680 D tRNA-Pro 2354604..2354680 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA39 tRNA SCTRNA39 NC_006905.1 2520234 2520308 D tRNA-Arg 2520234..2520308 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA40 tRNA SCTRNA40 NC_006905.1 2544665 2544740 R tRNA-Ala complement(2544665..2544740) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA41 tRNA SCTRNA41 NC_006905.1 2544783 2544858 R tRNA-Ala complement(2544783..2544858) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA42 tRNA SCTRNA42 NC_006905.1 2547564 2547639 D tRNA-Val 2547564..2547639 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA43 tRNA SCTRNA43 NC_006905.1 2547685 2547760 D tRNA-Val 2547685..2547760 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA44 tRNA SCTRNA44 NC_006905.1 2547765 2547840 D tRNA-Lys 2547765..2547840 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA45 tRNA SCTRNA45 NC_006905.1 2817186 2817262 R tRNA-Glu complement(2817186..2817262) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA46 tRNA SCTRNA46 NC_006905.1 2924470 2924546 R tRNA-Arg complement(2924470..2924546) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA47 tRNA SCTRNA47 NC_006905.1 2924609 2924685 R tRNA-Arg complement(2924609..2924685) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA48 tRNA SCTRNA48 NC_006905.1 2924748 2924824 R tRNA-Arg complement(2924748..2924824) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA49 tRNA SCTRNA49 NC_006905.1 2924886 2924962 R tRNA-Arg complement(2924886..2924962) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA50 tRNA SCTRNA50 NC_006905.1 2924966 2925058 R tRNA-Ser complement(2924966..2925058) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA51 tRNA SCTRNA51 NC_006905.1 3100757 3100833 D tRNA-Met 3100757..3100833 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA52 tRNA SCTRNA52 NC_006905.1 3100863 3100939 D tRNA-Met 3100863..3100939 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA53 tRNA SCTRNA53 NC_006905.1 3155594 3155667 R tRNA-Gly complement(3155594..3155667) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA54 tRNA SCTRNA54 NC_006905.1 3235633 3235708 D tRNA-Phe 3235633..3235708 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA55 tRNA SCTRNA55 NC_006905.1 3341071 3341146 D tRNA-Met 3341071..3341146 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA56 tRNA SCTRNA56 NC_006905.1 3414530 3414606 R tRNA-Met complement(3414530..3414606) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA57 tRNA SCTRNA57 NC_006905.1 3416491 3416577 R tRNA-Leu complement(3416491..3416577) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA58 tRNA SCTRNA58 NC_006905.1 3521348 3521423 R tRNA-Thr complement(3521348..3521423) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA59 tRNA SCTRNA59 NC_006905.1 3524745 3524820 R tRNA-Glu complement(3524745..3524820) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA60 tRNA SCTRNA60 NC_006905.1 3771190 3771266 R tRNA-Pro complement(3771190..3771266) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA61 tRNA SCTRNA61 NC_006905.1 3890879 3890969 D tRNA-Sec 3890879..3890969 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA62 tRNA SCTRNA62 NC_006905.1 4036813 4036889 D tRNA-Ile 4036813..4036889 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA63 tRNA SCTRNA63 NC_006905.1 4036999 4037074 D tRNA-Ala 4036999..4037074 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA64 tRNA SCTRNA64 NC_006905.1 4040430 4040506 D tRNA-Asp 4040430..4040506 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA65 tRNA SCTRNA65 NC_006905.1 4040515 4040590 D tRNA-Trp 4040515..4040590 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA66 tRNA SCTRNA66 NC_006905.1 4076704 4076780 D tRNA-Arg 4076704..4076780 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA67 tRNA SCTRNA67 NC_006905.1 4076835 4076910 D tRNA-His 4076835..4076910 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA68 tRNA SCTRNA68 NC_006905.1 4076931 4077017 D tRNA-Leu 4076931..4077017 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA69 tRNA SCTRNA69 NC_006905.1 4077060 4077136 D tRNA-Pro 4077060..4077136 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA70 tRNA SCTRNA70 NC_006905.1 4131902 4131978 D tRNA-Ile 4131902..4131978 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA71 tRNA SCTRNA71 NC_006905.1 4132088 4132163 D tRNA-Ala 4132088..4132163 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA72 tRNA SCTRNA72 NC_006905.1 4287124 4287199 D tRNA-Glu 4287124..4287199 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA73 tRNA SCTRNA73 NC_006905.1 4294063 4294138 D tRNA-Thr 4294063..4294138 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA74 tRNA SCTRNA74 NC_006905.1 4294147 4294231 D tRNA-Tyr 4294147..4294231 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA75 tRNA SCTRNA75 NC_006905.1 4294348 4294422 D tRNA-Gly 4294348..4294422 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA76 tRNA SCTRNA76 NC_006905.1 4294429 4294504 D tRNA-Thr 4294429..4294504 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA77 tRNA SCTRNA77 NC_006905.1 4329881 4329956 D tRNA-Glu 4329881..4329956 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA78 tRNA SCTRNA78 NC_006905.1 4501280 4501355 R tRNA-Phe complement(4501280..4501355) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA79 tRNA SCTRNA79 NC_006905.1 4531119 4531194 D tRNA-Gly 4531119..4531194 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA80 tRNA SCTRNA80 NC_006905.1 4531351 4531426 D tRNA-Gly 4531351..4531426 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA81 tRNA SCTRNA81 NC_006905.1 4531583 4531658 D tRNA-Gly 4531583..4531658 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA82 tRNA SCTRNA82 NC_006905.1 4644987 4645071 D tRNA-Leu 4644987..4645071 Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA83 tRNA SCTRNA83 NC_006905.1 4712938 4713024 R tRNA-Leu complement(4712938..4713024) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA84 tRNA SCTRNA84 NC_006905.1 4713056 4713142 R tRNA-Leu complement(4713056..4713142) Salmonella enterica subsp. enterica serovar Choleraesuis str. SCTRNA85 tRNA SCTRNA85 NC_006905.1 4713170 4713256 R tRNA-Leu complement(4713170..4713256) Salmonella enterica subsp. enterica serovar Choleraesuis str. SC16Sr1 rRNA SC16Sr1 NC_006905.1 285178 286711 D 16S ribosomal RNA 285178..286711 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC23Sr1 rRNA SC23Sr1 NC_006905.1 287224 290231 D 23S ribosomal RNA 287224..290231 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC5Sr1 rRNA SC5Sr1 NC_006905.1 290427 290546 D 5S ribosomal RNA 290427..290546 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC5Sr2 rRNA SC5Sr2 NC_006905.1 2813881 2814000 R 5S ribosomal RNA complement(2813881..2814000) Salmonella enterica subsp. enterica serovar Choleraesuis str. SC23Sr2 rRNA SC23Sr2 NC_006905.1 2814092 2816996 R 23S ribosomal RNA complement(2814092..2816996) Salmonella enterica subsp. enterica serovar Choleraesuis str. SC16Sr2 rRNA SC16Sr2 NC_006905.1 2817349 2818892 R 16S ribosomal RNA complement(2817349..2818892) Salmonella enterica subsp. enterica serovar Choleraesuis str. SC5Sr3 rRNA SC5Sr3 NC_006905.1 3521191 3521310 R 5S ribosomal RNA complement(3521191..3521310) Salmonella enterica subsp. enterica serovar Choleraesuis str. SC5Sr32 rRNA SC5Sr32 NC_006905.1 3521436 3521555 R 5S ribosomal RNA complement(3521436..3521555) Salmonella enterica subsp. enterica serovar Choleraesuis str. SC23Sr3 rRNA SC23Sr3 NC_006905.1 3521647 3524553 R 23S ribosomal RNA complement(3521647..3524553) Salmonella enterica subsp. enterica serovar Choleraesuis str. SC16Sr3 rRNA SC16Sr3 NC_006905.1 3524907 3526444 R 16S ribosomal RNA complement(3524907..3526444) Salmonella enterica subsp. enterica serovar Choleraesuis str. SC16Sr4 rRNA SC16Sr4 NC_006905.1 4035209 4036742 D 16S ribosomal RNA 4035209..4036742 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC23Sr4 rRNA SC23Sr4 NC_006905.1 4037255 4040166 D 23S ribosomal RNA 4037255..4040166 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC5Sr4 rRNA SC5Sr4 NC_006905.1 4040258 4040377 D 5S ribosomal RNA 4040258..4040377 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC16Sr5 rRNA SC16Sr5 NC_006905.1 4130296 4131831 D 16S ribosomal RNA 4130296..4131831 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC23Sr5 rRNA SC23Sr5 NC_006905.1 4132343 4135250 D 23S ribosomal RNA 4132343..4135250 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC5Sr5 rRNA SC5Sr5 NC_006905.1 4135342 4135461 D 5S ribosomal RNA 4135342..4135461 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC16Sr6 rRNA SC16Sr6 NC_006905.1 4285504 4287037 D 16S ribosomal RNA 4285504..4287037 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC23Sr6 rRNA SC23Sr6 NC_006905.1 4287391 4290298 D 23S ribosomal RNA 4287391..4290298 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC5Sr6 rRNA SC5Sr6 NC_006905.1 4290390 4290509 D 5S ribosomal RNA 4290390..4290509 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC16Sr7 rRNA SC16Sr7 NC_006905.1 4328261 4329794 D 16S ribosomal RNA 4328261..4329794 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC23Sr7 rRNA SC23Sr7 NC_006905.1 4330148 4333054 D 23S ribosomal RNA 4330148..4333054 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC5Sr7 rRNA SC5Sr7 NC_006905.1 4333146 4333265 D 5S ribosomal RNA 4333146..4333265 Salmonella enterica subsp. enterica serovar Choleraesuis str.