-- dump date 20140620_043546 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 chrom_position -- field 4 chromosome -- field 5 codon_start -- field 6 contig -- field 7 description -- field 8 end_pos -- field 9 gene -- field 10 gene_id -- field 11 name -- field 12 organism -- field 13 product -- field 14 protein_id -- field 15 start_pos -- field 16 strand -- field 17 taxid -- field 18 type -- header -- id GI chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_209255.1 60115463 complement(join(49073..49558,1..552)) 1 NC_006855.1 transposase 552 321314000001 SCV01 Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209255.1 49073 R 321314 CDS YP_209256.1 60115464 1161..2054 1 NC_006855.1 IPR000847: bacterial regulatory protein LysR; transcriptional activator 2054 spvR 321314000002 spvR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional activator YP_209256.1 1161 D 321314 CDS YP_209257.1 60115465 2566..3333 1 NC_006855.1 M3 in mba region; IPR003518: Salmonella virulence plasmid 28.1 kDa A protein; virulence protein 3333 spvA 321314000003 spvA Salmonella enterica subsp. enterica serovar Choleraesuis str. virulence protein YP_209257.1 2566 D 321314 CDS YP_209258.1 60115466 3515..5290 1 NC_006855.1 IPR003284: Salmonella virulence plasmid 65 kDa B protein; 65 kDa virulence protein 5290 spvB 321314000004 spvB Salmonella enterica subsp. enterica serovar Choleraesuis str. 65 kDa virulence protein YP_209258.1 3515 D 321314 CDS YP_209259.1 60115467 5571..6296 1 NC_006855.1 IPR003519: Salmonella virulence-associated 28 kDa protein; virulence protein 6296 spvC 321314000005 spvC Salmonella enterica subsp. enterica serovar Choleraesuis str. virulence protein YP_209259.1 5571 D 321314 CDS YP_209260.1 60115468 6557..7207 1 NC_006855.1 IPR008834: Salmonella plasmid virulence SpvD; virulence protein VsdE 7207 spvD 321314000006 spvD Salmonella enterica subsp. enterica serovar Choleraesuis str. virulence protein VsdE YP_209260.1 6557 D 321314 CDS YP_209261.1 60115469 complement(7334..7759) 1 NC_006855.1 IPR002686: transposase IS200-like; transposase 7759 321314000007 SCV07 Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209261.1 7334 R 321314 CDS YP_209262.1 60115470 7816..8166 1 NC_006855.1 virulence protein VsdF 8166 vsdF 321314000008 vsdF Salmonella enterica subsp. enterica serovar Choleraesuis str. virulence protein VsdF YP_209262.1 7816 D 321314 CDS YP_209263.1 60115471 complement(8292..8792) 1 NC_006855.1 IPR003535: intimin bacterial adhesion mediator protein; hypothetical protein 8792 321314000009 SCV09 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209263.1 8292 R 321314 CDS YP_209264.1 60115472 complement(8672..9259) 1 NC_006855.1 IPR002482: peptidoglycan-binding LysM; hypothetical protein 9259 321314000010 SCV10 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209264.1 8672 R 321314 CDS YP_209265.1 60115473 complement(9512..9997) 1 NC_006855.1 hypothetical protein 9997 321314000011 SCV11 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209265.1 9512 R 321314 CDS YP_209266.1 60115474 complement(9991..10500) 1 NC_006855.1 hypothetical protein 10500 321314000012 SCV12 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209266.1 9991 R 321314 CDS YP_209267.1 60115475 complement(10644..11195) 1 NC_006855.1 IPR001633: EAL domain; hypothetical protein 11195 321314000013 SCV13 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209267.1 10644 R 321314 CDS YP_209268.1 60115476 complement(11204..11986) 1 NC_006855.1 protein D; IPR002104: phage integrase; resolvase 11986 rsd 321314000014 rsd Salmonella enterica subsp. enterica serovar Choleraesuis str. resolvase YP_209268.1 11204 R 321314 CDS YP_209269.1 60115477 complement(12021..12542) 1 NC_006855.1 hypothetical protein 12542 321314000015 SCV15 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209269.1 12021 R 321314 CDS YP_209270.1 60115478 complement(12539..12829) 1 NC_006855.1 hypothetical protein 12829 321314000016 SCV16 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209270.1 12539 R 321314 CDS YP_209271.1 60115479 complement(12831..13136) 1 NC_006855.1 LetB protein; protein G; controlled cell death protein; post-segregation toxin; toxin addiction system; plasmid maintenance protein CcdB 13136 ccdB 321314000017 ccdB Salmonella enterica subsp. enterica serovar Choleraesuis str. plasmid maintenance protein CcdB YP_209271.1 12831 R 321314 CDS YP_209272.1 60115480 complement(13138..13356) 1 NC_006855.1 LetA protein; protein H; LynA; plasmid maintenance protein CcdA 13356 ccdA 321314000018 ccdA Salmonella enterica subsp. enterica serovar Choleraesuis str. plasmid maintenance protein CcdA YP_209272.1 13138 R 321314 CDS YP_209273.1 60115481 14032..14553 1 NC_006855.1 hypothetical protein 14553 321314000019 SCV19 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209273.1 14032 D 321314 CDS YP_209274.1 60115482 15796..16815 1 NC_006855.1 IPR000525: initiator RepB protein; IPR002584: RepA protein; RepFIB replication protein A 16815 repA/repC 321314000020 repA/repC Salmonella enterica subsp. enterica serovar Choleraesuis str. RepFIB replication protein A YP_209274.1 15796 D 321314 CDS YP_209275.1 60115483 complement(17104..17265) 1 NC_006855.1 afa region; site-specific recombinase 17265 321314000021 SCV21 Salmonella enterica subsp. enterica serovar Choleraesuis str. site-specific recombinase YP_209275.1 17104 R 321314 CDS YP_209276.1 60115484 complement(17318..17704) 1 NC_006855.1 IPR005220: conserved hypothetical protein 156; protein YgiW precursor 17704 321314000022 SCV22 Salmonella enterica subsp. enterica serovar Choleraesuis str. protein YgiW precursor YP_209276.1 17318 R 321314 CDS YP_209277.1 60115485 18410..18712 1 NC_006855.1 IPR004356: P pili regulatory PapB protein; major pilu subunit operon regulatory protein PapB 18712 pefB 321314000023 pefB Salmonella enterica subsp. enterica serovar Choleraesuis str. major pilu subunit operon regulatory protein PapB YP_209277.1 18410 D 321314 CDS YP_209278.1 60115486 18987..19505 1 NC_006855.1 IPR000259: fimbrial protein; F107 fimbrial protein precursor 19505 pefA 321314000024 pefA Salmonella enterica subsp. enterica serovar Choleraesuis str. F107 fimbrial protein precursor YP_209278.1 18987 D 321314 CDS YP_209279.1 60115487 19732..22140 1 NC_006855.1 IPR000015: fimbrial biogenesis outer membrane usher protein; outer membrane usher protein PefC precursor 22140 pefC 321314000025 pefC Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane usher protein PefC precursor YP_209279.1 19732 D 321314 CDS YP_209280.1 60115488 22142..22825 1 NC_006855.1 IPR001829: bacterial pili assembly chaperone; chaperone protein FanE precursor 22825 pefD 321314000026 pefD Salmonella enterica subsp. enterica serovar Choleraesuis str. chaperone protein FanE precursor YP_209280.1 22142 D 321314 CDS YP_209281.2 229037897 complement(23483..24352) 1 NC_006855.1 RepA; replication protein 24352 repA/repB 321314000027 repA/repB Salmonella enterica subsp. enterica serovar Choleraesuis str. replication protein YP_209281.2 23483 R 321314 CDS YP_209282.1 60115490 complement(24345..24422) 1 NC_006855.1 acts to regulate the expression of the plasmid replication protein RepA in the IncFII plasmid group; RepA leader peptide Tap 24422 tap/repC 321314000028 tap/repC Salmonella enterica subsp. enterica serovar Choleraesuis str. RepA leader peptide Tap YP_209282.1 24345 R 321314 CDS YP_209283.1 60115491 25006..25584 1 NC_006855.1 hypothetical protein 25584 321314000029 SCV29 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209283.1 25006 D 321314 CDS YP_209284.1 60115492 complement(25830..26393) 1 NC_006855.1 conjugal transfer protein; IPR007950: fertility inhibition; conjugal transfer fertility inhibition protein FinO 26393 fio2 321314000030 fio2 Salmonella enterica subsp. enterica serovar Choleraesuis str. conjugal transfer fertility inhibition protein FinO YP_209284.1 25830 R 321314 CDS YP_209285.1 60115493 complement(26448..27188) 1 NC_006855.1 IPR008875: TraX; conjugal transfer pilus acetylation protein TraX 27188 321314000031 SCV31 Salmonella enterica subsp. enterica serovar Choleraesuis str. conjugal transfer pilus acetylation protein TraX YP_209285.1 26448 R 321314 CDS YP_209286.1 60115494 complement(27242..27931) 1 NC_006855.1 DNA helicase I; TraI protein 27931 321314000032 SCV32 Salmonella enterica subsp. enterica serovar Choleraesuis str. TraI protein YP_209286.1 27242 R 321314 CDS YP_209287.1 60115495 complement(27889..29724) 1 NC_006855.1 DNA helicase I; TraI protein 29724 321314000033 SCV33 Salmonella enterica subsp. enterica serovar Choleraesuis str. TraI protein YP_209287.1 27889 R 321314 CDS YP_209288.1 60115496 complement(29817..30419) 1 NC_006855.1 TrbH protein 30419 321314000034 SCV34 Salmonella enterica subsp. enterica serovar Choleraesuis str. TrbH protein YP_209288.1 29817 R 321314 CDS YP_209289.1 60115497 complement(30419..32617) 1 NC_006855.1 type IV secretion system coupling protein; similar to F plasmid TraD; conjugal transfer protein TraD 32617 321314000035 SCV35 Salmonella enterica subsp. enterica serovar Choleraesuis str. conjugal transfer protein TraD YP_209289.1 30419 R 321314 CDS YP_209290.1 60115498 complement(32989..33720) 1 NC_006855.1 IPR008874: enterobacterial TraT complement resistance; conjugal transfer surface exclusion protein TraT 33720 321314000036 SCV36 Salmonella enterica subsp. enterica serovar Choleraesuis str. conjugal transfer surface exclusion protein TraT YP_209290.1 32989 R 321314 CDS YP_209291.1 60115499 complement(34262..35068) 1 NC_006855.1 TraG protein 35068 321314000037 SCV37 Salmonella enterica subsp. enterica serovar Choleraesuis str. TraG protein YP_209291.1 34262 R 321314 CDS YP_209292.1 60115500 35265..35687 1 NC_006855.1 IPR006197: peptidase S24: IPR006198: peptidase S24; SamA protein 35687 samA 321314000038 samA Salmonella enterica subsp. enterica serovar Choleraesuis str. SamA protein YP_209292.1 35265 D 321314 CDS YP_209293.1 60115501 35687..36961 1 NC_006855.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 36961 umuC 321314000039 umuC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase V subunit UmuC YP_209293.1 35687 D 321314 CDS YP_209294.1 60115502 complement(37043..38020) 1 NC_006855.1 IPR003115: ParB-like nuclease: IPR004437: ParB-like partition protein; plasmid partition protein B 38020 parB 321314000040 parB Salmonella enterica subsp. enterica serovar Choleraesuis str. plasmid partition protein B YP_209294.1 37043 R 321314 CDS YP_209295.1 60115503 complement(38017..39222) 1 NC_006855.1 IPR006095: Glu/Leu/Phe/Val dehydrogenase; plasmid partition protein A 39222 parA 321314000041 parA Salmonella enterica subsp. enterica serovar Choleraesuis str. plasmid partition protein A YP_209295.1 38017 R 321314 CDS YP_209296.1 60115504 39637..40578 1 NC_006855.1 IPR006842: putative transposase YhgA-like; hypothetical protein 40578 ytl2 321314000042 ytl2 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209296.1 39637 D 321314 CDS YP_209297.1 60115505 complement(40610..41176) 1 NC_006855.1 hypothetical protein 41176 321314000043 SCV43 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209297.1 40610 R 321314 CDS YP_209298.1 60115506 complement(41233..41568) 1 NC_006855.1 hypothetical protein 41568 321314000044 SCV44 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209298.1 41233 R 321314 CDS YP_209299.1 60115507 complement(41752..42168) 1 NC_006855.1 hypothetical protein 42168 ytl1 321314000045 ytl1 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209299.1 41752 R 321314 CDS YP_209300.1 60115508 complement(42254..43369) 1 NC_006855.1 myosin heavy chain gizzard smooth muscle 43369 tlpA 321314000046 tlpA Salmonella enterica subsp. enterica serovar Choleraesuis str. myosin heavy chain gizzard smooth muscle YP_209300.1 42254 R 321314 CDS YP_209301.1 60115509 complement(43643..44122) 1 NC_006855.1 hypothetical protein 44122 321314000047 SCV47 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209301.1 43643 R 321314 CDS YP_209302.1 60115510 44771..45511 1 NC_006855.1 IPR001765: prokaryotic carbonic anhydrase: IPR006311: twin-arginine translocation pathway signal; carbonic anhydrase chloroplast precursor 45511 mig5 321314000048 mig5 Salmonella enterica subsp. enterica serovar Choleraesuis str. carbonic anhydrase chloroplast precursor YP_209302.1 44771 D 321314 CDS YP_209303.1 60115511 45646..46278 1 NC_006855.1 IPR006118: site-specific recombinase; IPR006119: resolvase, N-terminal; integrase-like protein Y4LS 46278 rlgA 321314000049 rlgA Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase-like protein Y4LS YP_209303.1 45646 D 321314 CDS YP_209304.1 60115512 46262..47926 1 NC_006855.1 IPR001584: integrase catalytic domain; hypothetical protein 47926 321314000050 SCV50 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209304.1 46262 D 321314 CDS YP_209305.1 60115513 47916..48884 1 NC_006855.1 IPR003593: AAA ATPase; hypothetical protein 48884 321314000051 SCV51 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209305.1 47916 D 321314 CDS YP_209306.1 60115515 466..819 1 NC_006856.1 hypothetical protein 819 321314000052 SC001 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209306.1 466 D 321314 CDS YP_209307.1 60115516 1068..1460 1 NC_006856.1 hypothetical protein 1460 321314000053 SC002 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209307.1 1068 D 321314 CDS YP_209308.1 60115517 1598..2482 1 NC_006856.1 IPR000620: protein of unknown function DUF6; hypothetical protein 2482 pecM 321314000054 pecM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209308.1 1598 D 321314 CDS YP_209309.1 60115518 complement(2514..3713) 1 NC_006856.1 IPR001958: tetracycline resistance protein; IPR004734: multidrug resistance protein; IPR005828: general substrate transporter; IPR005829: sugar transporter superfamily; IPR007114: major facilitator superfamily; tetracycline efflux protein 3713 tetA 321314000055 tetA Salmonella enterica subsp. enterica serovar Choleraesuis str. tetracycline efflux protein YP_209309.1 2514 R 321314 CDS YP_209310.1 60115519 3792..4469 1 NC_006856.1 IPR001137: glycoside hydrolase family 11; IPR001647: bacterial regulatory protein TetR (HTH motif); IPR003012: tetracycline repressor protein; IPR004111: tetracycline repressor; RK2 tetracycline repressor protein 4469 tetR 321314000056 tetR Salmonella enterica subsp. enterica serovar Choleraesuis str. RK2 tetracycline repressor protein YP_209310.1 3792 D 321314 CDS YP_209311.1 60115520 complement(4501..4743) 1 NC_006856.1 relaxase/helicase 4743 tnpA 321314000057 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. relaxase/helicase YP_209311.1 4501 R 321314 CDS YP_209312.1 60115521 complement(4801..5475) 1 NC_006856.1 IPR002513: transposase Tn3; transposase 5475 tnpA 321314000058 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209312.1 4801 R 321314 CDS YP_209313.1 60115522 complement(5814..8786) 1 NC_006856.1 IPR002513: transposase Tn3; transposase 8786 tnpA 321314000059 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209313.1 5814 R 321314 CDS YP_209314.1 60115523 complement(8789..9088) 1 NC_006856.1 IPR006120: resolvase helix-turn-helix domain; recombinase 9088 tnpR 321314000060 tnpR Salmonella enterica subsp. enterica serovar Choleraesuis str. recombinase YP_209314.1 8789 R 321314 CDS YP_209315.1 60115524 complement(9000..9392) 1 NC_006856.1 drug-resistance protein; putative transposase 9392 tnpA 321314000061 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. putative transposase YP_209315.1 9000 R 321314 CDS YP_209316.1 60115525 complement(10014..10655) 1 NC_006856.1 CAT-II; IPR001707: chloramphenicol acetyl transferase; chloramphenicol acetyl transferase II 10655 cat2 321314000062 cat2 Salmonella enterica subsp. enterica serovar Choleraesuis str. chloramphenicol acetyl transferase II YP_209316.1 10014 R 321314 CDS YP_209317.1 60115526 complement(10805..11239) 1 NC_006856.1 hypothetical protein 11239 321314000063 SC012 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209317.1 10805 R 321314 CDS YP_209318.1 60115527 11484..12089 1 NC_006856.1 IPR001584: integrase catalytic domain; transposase 12089 tnpA 321314000064 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209318.1 11484 D 321314 CDS YP_209319.1 60115528 complement(12035..12952) 1 NC_006856.1 IPR002513: transposase Tn3; transposase 12952 tnpA 321314000065 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209319.1 12035 R 321314 CDS YP_209320.1 60115529 complement(12955..13440) 1 NC_006856.1 IPR006118: site-specific recombinase; IPR006119: resolvase, N-terminal; IPR006120: resolvase helix-turn-helix domain; resolvase 13440 tnpR 321314000066 tnpR Salmonella enterica subsp. enterica serovar Choleraesuis str. resolvase YP_209320.1 12955 R 321314 CDS YP_209321.1 60115531 complement(13480..14085) 1 NC_006856.1 IPR001584: integrase catalytic domain; transposase 14085 tnpA 321314000067 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209321.1 13480 R 321314 CDS YP_209322.1 60115530 13657..14634 1 NC_006856.1 IPR000209: peptidase S8 subtilase serine protease; IPR006118: site-specific recombinase; IPR006119: resolvase, N-terminal; IPR006120: resolvase helix-turn-helix domain; hypothetical protein 14634 tnpR 321314000068 tnpR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209322.1 13657 D 321314 CDS YP_209323.1 60115532 14817..15626 1 NC_006856.1 IPR000871: Beta-lactamase, class A; IPR001466: Beta-lactamase; beta-lactamase 15626 tem-1 321314000069 tem-1 Salmonella enterica subsp. enterica serovar Choleraesuis str. beta-lactamase YP_209323.1 14817 D 321314 CDS YP_209324.1 60115533 complement(15718..15810) 1 NC_006856.1 drug-resistance protein; hypothetical protein 15810 321314000070 SC019 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209324.1 15718 R 321314 CDS YP_209325.1 60115534 15842..17536 1 NC_006856.1 IPR000103: pyridine nucleotide-disulphide oxidoreductase, class-II; IPR000815: mercuric reductase; IPR001100: pyridine nucleotide-disulphide oxidoreductase, class I; IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR004099: pyridine nucleotide-disulphide oxidoreductase dimerisation domain; IPR006121: heavy metal transport/detoxification protein; IPR006191: heavy metal binding; drug-resistance protein; putative mercuric reductase 17536 merA 321314000071 merA Salmonella enterica subsp. enterica serovar Choleraesuis str. putative mercuric reductase YP_209325.1 15842 D 321314 CDS YP_209326.1 60115535 17554..17916 1 NC_006856.1 IPR000551: bacterial regulatory protein, MerR family; drug-resistance protein; transcriptional regulator MerD 17916 merD 321314000072 merD Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator MerD YP_209326.1 17554 D 321314 CDS YP_209327.1 60115536 17913..18149 1 NC_006856.1 IPR007746: MerE; putative mercury resistance protein 18149 merE 321314000073 merE Salmonella enterica subsp. enterica serovar Choleraesuis str. putative mercury resistance protein YP_209327.1 17913 D 321314 CDS YP_209328.1 60115537 17969..18853 1 NC_006856.1 IPR001633: EAL domain; Urf2 18853 urf2 321314000074 urf2 Salmonella enterica subsp. enterica serovar Choleraesuis str. Urf2 YP_209328.1 17969 D 321314 CDS YP_209329.1 60115538 18892..20196 1 NC_006856.1 IPR001584: integrase catalytic domain; TniAdelta1 20196 tniAdelta1 321314000075 tniAdelta1 Salmonella enterica subsp. enterica serovar Choleraesuis str. TniAdelta1 YP_209329.1 18892 D 321314 CDS YP_209330.1 60115539 20225..20947 1 NC_006856.1 IPR001584: integrase catalytic domain; drug-resistance protein; hypothetical protein 20947 tnpA 321314000076 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209330.1 20225 D 321314 CDS YP_209331.1 60115540 complement(21137..21952) 1 NC_006856.1 IPR002575: aminoglycoside phosphotransferase; IPR008266: tyrosine protein kinase, active site; aminoglycoside 3'-phosphotransferase 21952 aph 321314000077 aph Salmonella enterica subsp. enterica serovar Choleraesuis str. aminoglycoside 3'-phosphotransferase YP_209331.1 21137 R 321314 CDS YP_209332.1 60115541 22085..22822 1 NC_006856.1 IPR001584: integrase catalytic domain; hypothetical protein 22822 tnpA 321314000078 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209332.1 22085 D 321314 CDS YP_209333.1 60115542 22815..23201 1 NC_006856.1 hypothetical protein 23201 tnpR 321314000079 tnpR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209333.1 22815 D 321314 CDS YP_209334.1 60115543 complement(23420..24433) 1 NC_006856.1 IPR002104: phage integrase; IPR004107: phage integrase, N-terminal SAM-like; drug-resistance protein; hypothetical protein 24433 int2 321314000080 int2 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209334.1 23420 R 321314 CDS YP_209335.1 60115544 24578..25075 1 NC_006856.1 IPR001796: dihydrofolate reductase; dihydrofolate reductase 25075 tri 321314000081 tri Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydrofolate reductase YP_209335.1 24578 D 321314 CDS YP_209336.1 60115545 complement(25324..25449) 1 NC_006856.1 hypothetical protein 25449 321314000082 SC031 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209336.1 25324 R 321314 CDS YP_209337.1 60115546 25483..26274 1 NC_006856.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 26274 aadA2 321314000083 aadA2 Salmonella enterica subsp. enterica serovar Choleraesuis str. aminoglycoside resistance protein YP_209337.1 25483 D 321314 CDS YP_209338.1 60115547 26438..26785 1 NC_006856.1 IPR000390: small multidrug resistance protein; drug-resistance protein; ORF3-QacEdelta1 fusion protein 26785 ebr 321314000084 ebr Salmonella enterica subsp. enterica serovar Choleraesuis str. ORF3-QacEdelta1 fusion protein YP_209338.1 26438 D 321314 CDS YP_209339.1 60115548 26779..27618 1 NC_006856.1 IPR000489: dihydropteroate synthase, DHPS; IPR006390: dihydropteroate synthase; drug-resistance protein; dihydropteroate synthase 27618 sulI 321314000085 sulI Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydropteroate synthase YP_209339.1 26779 D 321314 CDS YP_209340.1 60115549 27746..28246 1 NC_006856.1 IPR000182: GCN5-related N-acetyltransferase; similar to gp:TTU42226_2; SulI3' 28246 sulI3' 321314000086 sulI3' Salmonella enterica subsp. enterica serovar Choleraesuis str. SulI3' YP_209340.1 27746 D 321314 CDS YP_209341.1 60115550 complement(28215..29207) 1 NC_006856.1 IPR008868: bacterial TniB; NTP-binding protein 29207 tniBdelta1 321314000087 tniBdelta1 Salmonella enterica subsp. enterica serovar Choleraesuis str. NTP-binding protein YP_209341.1 28215 R 321314 CDS YP_209342.1 60115552 complement(29220..29912) 1 NC_006856.1 putative transposase 29912 tnpA 321314000088 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. putative transposase YP_209342.1 29220 R 321314 CDS YP_209343.1 60115551 29367..30089 1 NC_006856.1 IPR001584: integrase catalytic domain; hypothetical protein 30089 tnpA 321314000089 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209343.1 29367 D 321314 CDS YP_209344.1 60115553 complement(30035..31627) 1 NC_006856.1 IPR001789: response regulator receiver; IPR003594: ATP-binding region, ATPase-like; IPR003661: histidine kinase A, N-terminal; IPR004358: bacterial sensor protein, C-terminal; IPR005467: histidine kinase; hypothetical protein 31627 321314000090 SC039 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209344.1 30035 R 321314 CDS YP_209345.1 60115554 complement(31624..32112) 1 NC_006856.1 hypothetical protein 32112 321314000091 SC040 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209345.1 31624 R 321314 CDS YP_209346.1 60115555 complement(32105..33058) 1 NC_006856.1 hypothetical protein 33058 321314000092 SC041 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209346.1 32105 R 321314 CDS YP_209347.1 60115556 complement(33092..33997) 1 NC_006856.1 IPR001789: response regulator receiver; drug-resistance protein; hypothetical protein 33997 321314000093 SC042 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209347.1 33092 R 321314 CDS YP_209348.1 60115557 34275..34475 1 NC_006856.1 hypothetical protein 34475 tem67 321314000094 tem67 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209348.1 34275 D 321314 CDS YP_209349.1 60115558 34469..35191 1 NC_006856.1 IPR001584: integrase catalytic domain; drug-resistance protein; transposase 35191 tnpA 321314000095 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209349.1 34469 D 321314 CDS YP_209350.1 60115559 35250..35489 1 NC_006856.1 macrolide-efflux determinant 35489 mefE 321314000096 mefE Salmonella enterica subsp. enterica serovar Choleraesuis str. macrolide-efflux determinant YP_209350.1 35250 D 321314 CDS YP_209351.1 60115560 35635..36498 1 NC_006856.1 IPR002198: short-chain dehydrogenase/reductase SDR; IPR002347: glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; short chain dehydrogenase 36498 yusZ 321314000097 yusZ Salmonella enterica subsp. enterica serovar Choleraesuis str. short chain dehydrogenase YP_209351.1 35635 D 321314 CDS YP_209352.1 60115561 36536..36781 1 NC_006856.1 drug-resistance protein; hypothetical protein 36781 yqkA 321314000098 yqkA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209352.1 36536 D 321314 CDS YP_209353.1 60115562 37250..38041 1 NC_006856.1 IPR000489: dihydropteroate synthase, DHPS; IPR006390: dihydropteroate synthase; dihydropteroate synthase 38041 sulII 321314000099 sulII Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydropteroate synthase YP_209353.1 37250 D 321314 CDS YP_209354.1 60115563 38288..38974 1 NC_006856.1 IPR001207: transposase, mutator family; similar to Pseudomonas cepacia insertion sequence IS406 and IS407 hypothetical protein 1 (S28978) and Burkholderia cepacia insertion sequence IS406 ORF1 (AAA25037); transposase 38974 tnpA 321314000100 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209354.1 38288 D 321314 CDS YP_209355.1 60115564 complement(39221..39553) 1 NC_006856.1 IPR000390: small multidrug resistance protein; drug-resistance protein; quaternary ammonium compound resistance protein 39553 qacF 321314000101 qacF Salmonella enterica subsp. enterica serovar Choleraesuis str. quaternary ammonium compound resistance protein YP_209355.1 39221 R 321314 CDS YP_209356.1 60115565 complement(39723..40514) 1 NC_006856.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 40514 aadA2 321314000102 aadA2 Salmonella enterica subsp. enterica serovar Choleraesuis str. aminoglycoside resistance protein YP_209356.1 39723 R 321314 CDS YP_209357.1 60115566 complement(40607..41866) 1 NC_006856.1 IPR001411: tetracycline resistance protein TetB; IPR001958: tetracycline resistance protein; IPR004734: multidrug resistance protein; IPR004812: drug resistance transporter Bcr/CflA subfamily; IPR005828: general substrate transporter; IPR007114: major facilitator superfamily; similar to Pseudomonas aeruginosa chloramphenicol resistance protein CmlA (A47033) and P. aeruginosa nonenzymatic chloramphenicol-resistance protein (AAA26057); chloramphenicol resistance protein 41866 cmlA 321314000103 cmlA Salmonella enterica subsp. enterica serovar Choleraesuis str. chloramphenicol resistance protein YP_209357.1 40607 R 321314 CDS YP_209358.2 229037898 complement(42128..42919) 1 NC_006856.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 42919 aadA2 321314000104 aadA2 Salmonella enterica subsp. enterica serovar Choleraesuis str. aminoglycoside resistance protein YP_209358.2 42128 R 321314 CDS YP_209359.1 60115568 complement(42977..43585) 1 NC_006856.1 IPR005834: haloacid dehalogenase-like hydrolase; IPR006383: HAD-superfamily hydrolase, subfamily IB (PSPase-like); IPR006385: HAD-superfamily subfamily IB hydrolase, hypothetical 2; hypothetical protein 43585 321314000105 SC054 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209359.1 42977 R 321314 CDS YP_209360.1 60115570 complement(43681..44760) 1 NC_006856.1 IPR000073: alpha/beta hydrolase fold; IPR000379: esterase/lipase/thioesterase; IPR003089: alpha/beta hydrolase; streptothricin acetyl-transferase 44760 sat 321314000106 sat Salmonella enterica subsp. enterica serovar Choleraesuis str. streptothricin acetyl-transferase YP_209360.1 43681 R 321314 CDS YP_209361.1 60115569 44690..45703 1 NC_006856.1 IPR002104: phage integrase; IPR004107: phage integrase, N-terminal SAM-like; drug-resistance protein; integrase 45703 int2 321314000107 int2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_209361.1 44690 D 321314 CDS YP_209362.1 60115571 45648..46256 1 NC_006856.1 IPR001633: EAL domain; hypothetical protein 46256 tnpM 321314000108 tnpM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209362.1 45648 D 321314 CDS YP_209363.1 60115572 46523..47245 1 NC_006856.1 IPR001584: integrase catalytic domain; hypothetical protein 47245 tnpA 321314000109 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209363.1 46523 D 321314 CDS YP_209364.1 60115573 complement(47279..47770) 1 NC_006856.1 hypothetical protein 47770 321314000110 SC059 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209364.1 47279 R 321314 CDS YP_209365.1 60115574 47877..48614 1 NC_006856.1 IPR006118: site-specific recombinase; IPR006119: resolvase, N-terminal; IPR006120: resolvase helix-turn-helix domain; resolvase 48614 paa4 321314000111 paa4 Salmonella enterica subsp. enterica serovar Choleraesuis str. resolvase YP_209365.1 47877 D 321314 CDS YP_209366.1 60115575 48611..48835 1 NC_006856.1 hypothetical protein 48835 321314000112 SC061 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209366.1 48611 D 321314 CDS YP_209367.1 60115576 49264..49539 1 NC_006856.1 IPR003220: insertion element protein; transposition protein 49539 insA 321314000113 insA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposition protein YP_209367.1 49264 D 321314 CDS YP_209368.1 60115577 49458..49961 1 NC_006856.1 IPR005063: transposase; transposition protein 49961 insB 321314000114 insB Salmonella enterica subsp. enterica serovar Choleraesuis str. transposition protein YP_209368.1 49458 D 321314 CDS YP_209369.1 60115578 50174..50815 1 NC_006856.1 drug-resistance protein; hypothetical protein 50815 321314000115 SC064 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209369.1 50174 D 321314 CDS YP_209370.1 60115579 51043..51936 1 NC_006856.1 IPR002575: aminoglycoside phosphotransferase; StrA 51936 stra 321314000116 stra Salmonella enterica subsp. enterica serovar Choleraesuis str. StrA YP_209370.1 51043 D 321314 CDS YP_209371.1 60115580 51955..52677 1 NC_006856.1 IPR001584: integrase catalytic domain; hypothetical protein 52677 tnpA 321314000117 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209371.1 51955 D 321314 CDS YP_209372.1 60115581 complement(52737..53264) 1 NC_006856.1 similar to plasmid R64 TraQ; TraQ-like protein 53264 traQ 321314000118 traQ Salmonella enterica subsp. enterica serovar Choleraesuis str. TraQ-like protein YP_209372.1 52737 R 321314 CDS YP_209373.1 60115582 complement(53264..53968) 1 NC_006856.1 similar to plasmid R64 TraP; TraP-like protein 53968 traP 321314000119 traP Salmonella enterica subsp. enterica serovar Choleraesuis str. TraP-like protein YP_209373.1 53264 R 321314 CDS YP_209374.1 60115583 complement(53968..55257) 1 NC_006856.1 similar to plasmid R64 TraO; TraO-like protein 55257 traO 321314000120 traO Salmonella enterica subsp. enterica serovar Choleraesuis str. TraO-like protein YP_209374.1 53968 R 321314 CDS YP_209375.1 60115584 complement(55260..56243) 1 NC_006856.1 similar to plasmid R64 TraN; TraN-like protein 56243 traN 321314000121 traN Salmonella enterica subsp. enterica serovar Choleraesuis str. TraN-like protein YP_209375.1 55260 R 321314 CDS YP_209376.1 60115585 complement(56254..56946) 1 NC_006856.1 similar to plasmid R64 TraM; TraM-like protein 56946 traM 321314000122 traM Salmonella enterica subsp. enterica serovar Choleraesuis str. TraM-like protein YP_209376.1 56254 R 321314 CDS YP_209377.1 60115586 complement(56943..57290) 1 NC_006856.1 similar to plasmid R64 TraL; TraL-like protein 57290 traL 321314000123 traL Salmonella enterica subsp. enterica serovar Choleraesuis str. TraL-like protein YP_209377.1 56943 R 321314 CDS YP_209378.1 60115587 complement(57308..57592) 1 NC_006856.1 DNA primase 57592 sogS 321314000124 sogS Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA primase YP_209378.1 57308 R 321314 CDS YP_209379.1 60115588 complement(57632..58237) 1 NC_006856.1 IPR001584: integrase catalytic domain; transposase 58237 tnpA 321314000125 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209379.1 57632 R 321314 CDS YP_209380.1 60115589 58327..60237 1 NC_006856.1 similar to plasmid R64 TraU; TraU-like protein 60237 traU 321314000126 traU Salmonella enterica subsp. enterica serovar Choleraesuis str. TraU-like protein YP_209380.1 58327 D 321314 CDS YP_209381.1 60115590 60237..60851 1 NC_006856.1 similar to plasmid R64 TraV; TraV-like protein 60851 traV 321314000127 traV Salmonella enterica subsp. enterica serovar Choleraesuis str. TraV-like protein YP_209381.1 60237 D 321314 CDS YP_209382.1 60115591 60818..62020 1 NC_006856.1 lipoprotein 62020 traW 321314000128 traW Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein YP_209382.1 60818 D 321314 CDS YP_209383.1 60115592 62049..62633 1 NC_006856.1 similar to plasmid R64 TraX; TraX-like protein 62633 traX 321314000129 traX Salmonella enterica subsp. enterica serovar Choleraesuis str. TraX-like protein YP_209383.1 62049 D 321314 CDS YP_209384.1 60115593 62661..64898 1 NC_006856.1 integral membrane protein 64898 traY 321314000130 traY Salmonella enterica subsp. enterica serovar Choleraesuis str. integral membrane protein YP_209384.1 62661 D 321314 CDS YP_209385.1 60115594 64969..65631 1 NC_006856.1 surface exclusion protein 65631 exeAB 321314000131 exeAB Salmonella enterica subsp. enterica serovar Choleraesuis str. surface exclusion protein YP_209385.1 64969 D 321314 CDS YP_209386.1 60115595 complement(65703..65912) 1 NC_006856.1 hypothetical protein 65912 321314000132 SC081 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209386.1 65703 R 321314 CDS YP_209387.1 60115596 66196..66480 1 NC_006856.1 hypothetical protein 66480 321314000133 SC082 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209387.1 66196 D 321314 CDS YP_209388.1 60115597 complement(66545..66841) 1 NC_006856.1 hypothetical protein 66841 321314000134 SC083 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209388.1 66545 R 321314 CDS YP_209389.1 60115598 67141..67392 1 NC_006856.1 hypothetical protein 67392 pndA 321314000135 pndA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209389.1 67141 D 321314 CDS YP_209390.1 60115599 67389..67487 1 NC_006856.1 hypothetical protein 67487 321314000136 SC085 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209390.1 67389 D 321314 CDS YP_209391.1 60115600 67692..67784 1 NC_006856.1 hypothetical protein 67784 pnd 321314000137 pnd Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209391.1 67692 D 321314 CDS YP_209392.1 60115601 67864..68007 1 NC_006856.1 hypothetical protein 68007 321314000138 SC087 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209392.1 67864 D 321314 CDS YP_209393.1 60115602 68464..69726 1 NC_006856.1 IPR002559: transposase IS4; drug-resistance protein; transposase 69726 tnpA 321314000139 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209393.1 68464 D 321314 CDS YP_209394.2 162139492 70050..71195 1 NC_006856.1 IPR001466: beta-lactamase; IPR001586: beta-lactamase, class C active site; beta-lactamase 71195 ampC 321314000140 ampC Salmonella enterica subsp. enterica serovar Choleraesuis str. beta-lactamase YP_209394.2 70050 D 321314 CDS YP_209395.1 60115604 71289..71822 1 NC_006856.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 71822 blc 321314000141 blc Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein Blc YP_209395.1 71289 D 321314 CDS YP_209396.1 60115605 complement(71819..72259) 1 NC_006856.1 IPR000390: small multidrug resistance protein; SugE protein 72259 sugE 321314000142 sugE Salmonella enterica subsp. enterica serovar Choleraesuis str. SugE protein YP_209396.1 71819 R 321314 CDS YP_209397.1 60115606 73205..73297 1 NC_006856.1 hypothetical protein 73297 321314000143 SC094 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209397.1 73205 D 321314 CDS YP_209398.1 60115607 73421..74629 1 NC_006856.1 similar to TrbA deposited in GenBank Accession Number BAA75143; TrbA-like protein 74629 trbA 321314000144 trbA Salmonella enterica subsp. enterica serovar Choleraesuis str. TrbA-like protein YP_209398.1 73421 D 321314 CDS YP_209399.1 60115608 74648..75718 1 NC_006856.1 IPR006663: thioredoxin domain 2; similar to gp:STYINCI1PR_4,prf:2209346D; hypothetical protein 75718 trbB 321314000145 trbB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209399.1 74648 D 321314 CDS YP_209400.1 60115609 75711..78002 1 NC_006856.1 similar to TrbC deposited in GenBank Accession Number BAA75141; TrbC-like protein 78002 trbC 321314000146 trbC Salmonella enterica subsp. enterica serovar Choleraesuis str. TrbC-like protein YP_209400.1 75711 D 321314 CDS YP_209401.1 60115610 complement(77821..77916) 1 NC_006856.1 hypothetical protein 77916 321314000147 SC098 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209401.1 77821 R 321314 CDS YP_209402.1 60115611 complement(78040..80739) 1 NC_006856.1 similar to relaxase (NikB) deposited in GenBank Accession Number BAA75140; NikB-like protein 80739 nikB 321314000148 nikB Salmonella enterica subsp. enterica serovar Choleraesuis str. NikB-like protein YP_209402.1 78040 R 321314 CDS YP_209403.1 60115612 complement(80750..81082) 1 NC_006856.1 relaxosome component 81082 nikA 321314000149 nikA Salmonella enterica subsp. enterica serovar Choleraesuis str. relaxosome component YP_209403.1 80750 R 321314 CDS YP_209404.1 60115613 81316..81591 1 NC_006856.1 similar to YggA deposited in GenBank Accession Number BAB91642; MobC-like protein 81591 mobC 321314000150 mobC Salmonella enterica subsp. enterica serovar Choleraesuis str. MobC-like protein YP_209404.1 81316 D 321314 CDS YP_209405.1 60115614 complement(81739..82590) 1 NC_006856.1 YdiA 82590 ydiA 321314000151 ydiA Salmonella enterica subsp. enterica serovar Choleraesuis str. YdiA YP_209405.1 81739 R 321314 CDS YP_209406.1 60115615 82592..82966 1 NC_006856.1 hypothetical protein 82966 321314000152 SC104 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209406.1 82592 D 321314 CDS YP_209407.1 60115616 82936..83133 1 NC_006856.1 hypothetical protein 83133 321314000153 SC105 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209407.1 82936 D 321314 CDS YP_209408.1 60115617 83167..83418 1 NC_006856.1 YgeA 83418 ygeA 321314000154 ygeA Salmonella enterica subsp. enterica serovar Choleraesuis str. YgeA YP_209408.1 83167 D 321314 CDS YP_209409.1 60115618 complement(83449..83655) 1 NC_006856.1 hypothetical protein 83655 321314000155 SC107 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209409.1 83449 R 321314 CDS YP_209410.1 60115619 complement(83717..84619) 1 NC_006856.1 IPR006842: similar to sp:YTL2_SALTY; putative YhgA-like transposase 84619 ydgA 321314000156 ydgA Salmonella enterica subsp. enterica serovar Choleraesuis str. putative YhgA-like transposase YP_209410.1 83717 R 321314 CDS YP_209411.1 60115620 complement(84616..85080) 1 NC_006856.1 CcgAII protein 85080 ccgA2 321314000157 ccgA2 Salmonella enterica subsp. enterica serovar Choleraesuis str. CcgAII protein YP_209411.1 84616 R 321314 CDS YP_209412.1 60115621 complement(85182..85448) 1 NC_006856.1 YdfB 85448 ydfB 321314000158 ydfB Salmonella enterica subsp. enterica serovar Choleraesuis str. YdfB YP_209412.1 85182 R 321314 CDS YP_209413.1 60115622 complement(85542..85976) 1 NC_006856.1 YdfA 85976 ydfA 321314000159 ydfA Salmonella enterica subsp. enterica serovar Choleraesuis str. YdfA YP_209413.1 85542 R 321314 CDS YP_209414.1 60115623 86081..86410 1 NC_006856.1 hypothetical protein 86410 321314000160 SC113 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209414.1 86081 D 321314 CDS YP_209415.1 60115624 complement(86705..87595) 1 NC_006856.1 anti-restriction protein 87595 ard 321314000161 ard Salmonella enterica subsp. enterica serovar Choleraesuis str. anti-restriction protein YP_209415.1 86705 R 321314 CDS YP_209416.1 60115625 complement(87667..88263) 1 NC_006856.1 similar to pir:T13129; hypothetical protein 88263 gp43 321314000162 gp43 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209416.1 87667 R 321314 CDS YP_209417.1 60115626 complement(88260..88979) 1 NC_006856.1 PsiA; plasmid SOS inhibition protein A 88979 psiA 321314000163 psiA Salmonella enterica subsp. enterica serovar Choleraesuis str. plasmid SOS inhibition protein A YP_209417.1 88260 R 321314 CDS YP_209418.1 60115627 complement(88976..89413) 1 NC_006856.1 plasmid SOS inhibition protein B 89413 psiB 321314000164 psiB Salmonella enterica subsp. enterica serovar Choleraesuis str. plasmid SOS inhibition protein B YP_209418.1 88976 R 321314 CDS YP_209419.2 162139493 complement(89463..91421) 1 NC_006856.1 IPR003115: ParB-like nuclease; IPR004437: ParB-like partition protein; similar to gp:RMPGR4A_1,prf:2006305A; ParB-like nuclease 91421 321314000165 SC118 Salmonella enterica subsp. enterica serovar Choleraesuis str. ParB-like nuclease YP_209419.2 89463 R 321314 CDS YP_209420.1 60115629 complement(91480..91713) 1 NC_006856.1 similar to gp:AF074613_85; YkfF 91713 ykfF 321314000166 ykfF Salmonella enterica subsp. enterica serovar Choleraesuis str. YkfF YP_209420.1 91480 R 321314 CDS YP_209421.1 60115630 complement(91771..92298) 1 NC_006856.1 IPR000424: Single-Strand binding protein; single-stranded DNA-binding protein 92298 ssb 321314000167 ssb Salmonella enterica subsp. enterica serovar Choleraesuis str. single-stranded DNA-binding protein YP_209421.1 91771 R 321314 CDS YP_209422.1 60115631 92419..92751 1 NC_006856.1 hypothetical protein 92751 321314000168 SC121 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209422.1 92419 D 321314 CDS YP_209423.1 60115632 complement(92682..92996) 1 NC_006856.1 YchA 92996 ychA 321314000169 ychA Salmonella enterica subsp. enterica serovar Choleraesuis str. YchA YP_209423.1 92682 R 321314 CDS YP_209424.1 60115633 complement(93009..93203) 1 NC_006856.1 YcjB 93203 ycgB 321314000170 ycgB Salmonella enterica subsp. enterica serovar Choleraesuis str. YcjB YP_209424.1 93009 R 321314 CDS YP_209425.1 60115634 complement(93067..93258) 1 NC_006856.1 orf63; hypothetical protein 93258 321314000171 SC124 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209425.1 93067 R 321314 CDS YP_209426.1 60115635 complement(93255..93677) 1 NC_006856.1 YcgC 93677 ycgC 321314000172 ycgC Salmonella enterica subsp. enterica serovar Choleraesuis str. YcgC YP_209426.1 93255 R 321314 CDS YP_209427.1 60115636 complement(93724..94149) 1 NC_006856.1 IPR004914: antirestriction protein; antirestriction protein KlcA 94149 klcA 321314000173 klcA Salmonella enterica subsp. enterica serovar Choleraesuis str. antirestriction protein KlcA YP_209427.1 93724 R 321314 CDS YP_209428.1 60115637 complement(94567..95337) 1 NC_006856.1 similar to gp:AB021078_36; YcfA 95337 ycfA 321314000174 ycfA Salmonella enterica subsp. enterica serovar Choleraesuis str. YcfA YP_209428.1 94567 R 321314 CDS YP_209429.1 60115638 complement(95382..95816) 1 NC_006856.1 similar to gp:AB011549_40; hypothetical protein 95816 321314000175 SC128 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209429.1 95382 R 321314 CDS YP_209430.1 60115639 complement(95830..96051) 1 NC_006856.1 similar to gp:AF106329_5; hypothetical protein 96051 321314000176 SC129 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209430.1 95830 R 321314 CDS YP_209431.1 60115640 complement(96052..96735) 1 NC_006856.1 IPR001091: Site-specific DNA-methyl transferase (cytosine-N4-specific); IPR002052: N-6 Adenine-specific DNA methylase; IPR002295: N6 adenine-specific DNA methyl transferase, D21 class; IPR002941: DNA methylase N-4/N-6; similar to gp:ECU48806_2; putative methylase 96735 mboIB 321314000177 mboIB Salmonella enterica subsp. enterica serovar Choleraesuis str. putative methylase YP_209431.1 96052 R 321314 CDS YP_209432.1 60115641 96842..96967 1 NC_006856.1 hypothetical protein 96967 321314000178 SC131 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209432.1 96842 D 321314 CDS YP_209433.1 60115642 complement(97126..97548) 1 NC_006856.1 hypothetical protein 97548 parB 321314000179 parB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209433.1 97126 R 321314 CDS YP_209434.1 60115643 98856..99203 1 NC_006856.1 hypothetical protein 99203 321314000180 SC135 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209434.1 98856 D 321314 CDS YP_209435.1 60115644 complement(99298..100269) 1 NC_006856.1 hypothetical protein 100269 321314000181 SC136 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209435.1 99298 R 321314 CDS YP_209436.1 60115645 100618..100866 1 NC_006856.1 ImpC 100866 impC 321314000182 impC Salmonella enterica subsp. enterica serovar Choleraesuis str. ImpC YP_209436.1 100618 D 321314 CDS YP_209437.1 60115646 100863..101300 1 NC_006856.1 IPR006197: Peptidase S24; IPR006198: Peptidase S24, C-terminal; similar to IMPA_SALTY,sp:18641; ImpA 101300 impA 321314000183 impA Salmonella enterica subsp. enterica serovar Choleraesuis str. ImpA YP_209437.1 100863 D 321314 CDS YP_209438.1 60115647 101499..103028 1 NC_006856.1 IPR002104: phage integrase; hypothetical protein 103028 321314000184 SC140 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209438.1 101499 D 321314 CDS YP_209439.1 60115648 101637..103028 1 NC_006856.1 IPR002104: phage integrase; hypothetical protein 103028 321314000185 SC141 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209439.1 101637 D 321314 CDS YP_209440.1 60115649 103028..104878 1 NC_006856.1 hypothetical protein 104878 321314000186 SC142 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209440.1 103028 D 321314 CDS YP_209441.1 60115650 104875..106866 1 NC_006856.1 IPR002104: phage integrase; hypothetical protein 106866 321314000187 SC143 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209441.1 104875 D 321314 CDS YP_209442.1 60115651 106868..107308 1 NC_006856.1 hypothetical protein 107308 321314000188 SC144 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209442.1 106868 D 321314 CDS YP_209443.1 60115652 complement(107564..108523) 1 NC_006856.1 hypothetical protein 108523 321314000189 SC145 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209443.1 107564 R 321314 CDS YP_209444.1 60115653 complement(108525..109706) 1 NC_006856.1 hypothetical protein 109706 321314000190 SC146 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209444.1 108525 R 321314 CDS YP_209445.1 60115654 110061..111149 1 NC_006856.1 hypothetical protein 111149 321314000191 SC147 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209445.1 110061 D 321314 CDS YP_209446.1 60115655 112815..113066 1 NC_006856.1 IPR006442: Prevent-host-death family protein; hypothetical protein 113066 321314000192 SC149 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209446.1 112815 D 321314 CDS YP_209447.1 60115656 113120..113425 1 NC_006856.1 hypothetical protein 113425 321314000193 SC150 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209447.1 113120 D 321314 CDS YP_209448.1 60115657 113298..113804 1 NC_006856.1 hypothetical protein 113804 321314000194 SC151 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209448.1 113298 D 321314 CDS YP_209449.1 60115658 complement(113896..114282) 1 NC_006856.1 hypothetical protein 114282 321314000195 SC152 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209449.1 113896 R 321314 CDS YP_209450.1 60115659 complement(114503..115474) 1 NC_006856.1 SopB; plasmid-partitioning protein 115474 sopB 321314000196 sopB Salmonella enterica subsp. enterica serovar Choleraesuis str. plasmid-partitioning protein YP_209450.1 114503 R 321314 CDS YP_209451.1 60115660 117380..118390 1 NC_006856.1 IPR000525: initiator RepB protein; IPR002584: RepA protein; DNA replication protein 118390 repA 321314000197 repA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA replication protein YP_209451.1 117380 D 321314 CDS YP_209452.1 60115661 complement(118727..118924) 1 NC_006856.1 hypothetical protein 118924 321314000198 SC155 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209452.1 118727 R 321314 CDS YP_209453.1 60115662 complement(119181..119525) 1 NC_006856.1 IPR000566: Lipocalin-related protein and Bos/Can/Equ allergen; IPR001064: beta and gamma crystallin; IPR002446: Bacterial lipocalin; putative lipoprotein 119525 blc 321314000199 blc Salmonella enterica subsp. enterica serovar Choleraesuis str. putative lipoprotein YP_209453.1 119181 R 321314 CDS YP_209454.1 60115663 119643..120368 1 NC_006856.1 IPR000551: bacterial regulatory protein, MerR family; putative transcriptional regulator 120368 mlrA 321314000200 mlrA Salmonella enterica subsp. enterica serovar Choleraesuis str. putative transcriptional regulator YP_209454.1 119643 D 321314 CDS YP_209455.1 60115664 120468..120878 1 NC_006856.1 IPR000895: Transthyretin; hypothetical protein 120878 yedX 321314000201 yedX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209455.1 120468 D 321314 CDS YP_209456.1 60115665 120981..121940 1 NC_006856.1 IPR007553: Protein of unknown function DUF523; putative pathogenicity island protein 121940 ybgA 321314000202 ybgA Salmonella enterica subsp. enterica serovar Choleraesuis str. putative pathogenicity island protein YP_209456.1 120981 D 321314 CDS YP_209457.1 60115666 122086..123174 1 NC_006856.1 IPR003439: ABC transporter; putative RecF protein 123174 recF 321314000203 recF Salmonella enterica subsp. enterica serovar Choleraesuis str. putative RecF protein YP_209457.1 122086 D 321314 CDS YP_209458.1 60115668 complement(123237..123959) 1 NC_006856.1 IPR001584: integrase catalytic domain; hypothetical protein 123959 tnpA 321314000204 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209458.1 123237 R 321314 CDS YP_209459.1 60115667 123414..124127 1 NC_006856.1 hypothetical protein 124127 321314000205 SC162 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209459.1 123414 D 321314 CDS YP_209460.1 60115669 complement(124205..125278) 1 NC_006856.1 IPR000345: Cytochrome c heme-binding site; hypothetical protein 125278 321314000206 SC163 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209460.1 124205 R 321314 CDS YP_209461.1 60115670 complement(125322..125501) 1 NC_006856.1 hypothetical protein 125501 321314000207 SC164 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209461.1 125322 R 321314 CDS YP_209462.1 60115671 125813..126052 1 NC_006856.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 126052 relB 321314000208 relB Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional antitoxin/transcriptional repressor RelB YP_209462.1 125813 D 321314 CDS YP_209463.1 60115672 126052..126339 1 NC_006856.1 hypothetical protein 126339 relE 321314000209 relE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209463.1 126052 D 321314 CDS YP_209464.1 60115673 complement(126223..126570) 1 NC_006856.1 hypothetical protein 126570 321314000210 SC167 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209464.1 126223 R 321314 CDS YP_209465.1 60115674 complement(126643..127422) 1 NC_006856.1 IPR001270: Chaperonin clpA/B; IPR002611: IstB-like ATP-binding protein; IPR003593: AAA ATPase; transposase/IS protein 127422 istB 321314000211 istB Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase/IS protein YP_209465.1 126643 R 321314 CDS YP_209466.1 60115675 complement(127422..128444) 1 NC_006856.1 IPR000792: Bacterial regulatory protein, LuxR family; IPR001584: integrase catalytic domain; IPR002197: Helix-turn-helix, Fis-type; IPR007101: IS21-like element transposase, HTH domain; putative transposase 128444 tnpA 321314000212 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. putative transposase YP_209466.1 127422 R 321314 CDS YP_209467.1 60115676 129244..131451 1 NC_006856.1 IPR002078: Sigma-54 factor interaction domain; hypothetical protein 131451 321314000213 SC170 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209467.1 129244 D 321314 CDS YP_209468.1 60115677 131454..134036 1 NC_006856.1 hypothetical protein 134036 321314000214 SC171 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209468.1 131454 D 321314 CDS YP_209469.1 60115678 complement(134082..134294) 1 NC_006856.1 hypothetical protein 134294 tnpA 321314000215 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209469.1 134082 R 321314 CDS YP_209470.1 60115679 complement(134457..135290) 1 NC_006856.1 IPR001584: integrase catalytic domain; hypothetical protein 135290 tnpA 321314000216 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209470.1 134457 R 321314 CDS YP_209471.1 60115680 complement(135314..135577) 1 NC_006856.1 IPR002514: transposase, IS3/IS911family; hypothetical protein 135577 tnpA 321314000217 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_209471.1 135314 R 321314 CDS YP_209472.1 60115681 135590..135958 1 NC_006856.1 putative mannose-6-phosphate isomerase 135958 mpi 321314000218 mpi Salmonella enterica subsp. enterica serovar Choleraesuis str. putative mannose-6-phosphate isomerase YP_209472.1 135590 D 321314 CDS YP_209473.1 60115682 complement(136006..136983) 1 NC_006856.1 IPR002104: phage integrase; IPR004107: Phage integrase, N-terminal SAM-like; integrase/recombinase 136983 int2 321314000219 int2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase/recombinase YP_209473.1 136006 R 321314 CDS YP_209474.1 60115683 137167..137544 1 NC_006856.1 IPR005063: IS1 transposase; IS1 protein InsB 137544 insB 321314000220 insB Salmonella enterica subsp. enterica serovar Choleraesuis str. IS1 protein InsB YP_209474.1 137167 D 321314 CDS YP_209475.1 60115684 complement(138055..138729) 1 NC_006856.1 IPR002513: transposase Tn3; transposase 138729 tnpA 321314000221 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_209475.1 138055 R 321314 CDS YP_214988.1 62178571 190..255 1 NC_006905.1 thr operon leader peptide 255 thrL 321314000222 thrL Salmonella enterica subsp. enterica serovar Choleraesuis str. thr operon leader peptide YP_214988.1 190 D 321314 CDS YP_214989.1 62178572 337..2799 1 NC_006905.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 2799 thrA 321314000223 thrA Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional aspartokinase I/homoserine dehydrogenase I YP_214989.1 337 D 321314 CDS YP_214990.1 62178573 2801..3730 1 NC_006905.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3730 thrB 321314000224 thrB Salmonella enterica subsp. enterica serovar Choleraesuis str. homoserine kinase YP_214990.1 2801 D 321314 CDS YP_214991.1 62178574 3734..5020 1 NC_006905.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 5020 thrC 321314000225 thrC Salmonella enterica subsp. enterica serovar Choleraesuis str. threonine synthase YP_214991.1 3734 D 321314 CDS YP_214992.1 62178575 complement(5114..5887) 1 NC_006905.1 IPR001064: Beta and gamma crystallin; hypothetical protein 5887 yaaA 321314000226 yaaA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_214992.1 5114 R 321314 CDS YP_214993.1 62178576 complement(5966..7396) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; IPR001463: Sodium:alanine symporter; IPR002293: Amino acid/polyamine transporter family I; AGCS family, alanine/glycine transport protein 7396 yaaJ 321314000227 yaaJ Salmonella enterica subsp. enterica serovar Choleraesuis str. AGCS family, alanine/glycine transport protein YP_214993.1 5966 R 321314 CDS YP_214994.2 162139625 7665..8618 1 NC_006905.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 8618 talB 321314000228 talB Salmonella enterica subsp. enterica serovar Choleraesuis str. transaldolase B YP_214994.2 7665 D 321314 CDS YP_214995.1 62178578 8729..9319 1 NC_006905.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 9319 mogA 321314000229 mogA Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdenum cofactor biosynthesis protein MogA YP_214995.1 8729 D 321314 CDS YP_214996.1 62178579 complement(9376..9942) 1 NC_006905.1 IPR000791: GPR1/FUN34/yaaH family; hypothetical protein 9942 yaaH 321314000230 yaaH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_214996.1 9376 R 321314 CDS YP_214997.1 62178580 complement(10092..10805) 1 NC_006905.1 hypothetical protein 10805 htgA 321314000231 htgA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_214997.1 10092 R 321314 CDS YP_214998.1 62178581 complement(10841..11245) 1 NC_006905.1 hypothetical protein 11245 yaaI 321314000232 yaaI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_214998.1 10841 R 321314 CDS YP_214999.1 62178582 11594..13510 1 NC_006905.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 13510 dnaK 321314000233 dnaK Salmonella enterica subsp. enterica serovar Choleraesuis str. molecular chaperone DnaK YP_214999.1 11594 D 321314 CDS YP_215000.1 62178583 13596..14735 1 NC_006905.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 14735 dnaJ 321314000234 dnaJ Salmonella enterica subsp. enterica serovar Choleraesuis str. molecular chaperone DnaJ YP_215000.1 13596 D 321314 CDS YP_215001.1 62178584 15015..15962 1 NC_006905.1 LysR family transcriptional regulator 15962 ybdO 321314000235 ybdO Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_215001.1 15015 D 321314 CDS YP_215002.1 62178585 16089..16433 1 NC_006905.1 hypothetical protein 16433 321314000236 SC0015 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215002.1 16089 D 321314 CDS YP_215003.1 62178586 complement(16494..17027) 1 NC_006905.1 hypothetical protein 17027 321314000237 SC0016 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215003.1 16494 R 321314 CDS YP_215004.1 62178587 complement(17044..17361) 1 NC_006905.1 hypothetical protein 17361 321314000238 SC0017 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215004.1 17044 R 321314 CDS YP_215005.1 62178588 20059..23055 1 NC_006905.1 hydroxymethyltransferase 23055 hmt 321314000240 hmt Salmonella enterica subsp. enterica serovar Choleraesuis str. hydroxymethyltransferase YP_215005.1 20059 D 321314 CDS YP_215006.1 62178589 23336..24040 1 NC_006905.1 hypothetical protein 24040 yaiV 321314000241 yaiV Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215006.1 23336 D 321314 CDS YP_215007.1 62178590 24470..25012 1 NC_006905.1 fimbrial subunit 25012 bcfA 321314000242 bcfA Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial subunit YP_215007.1 24470 D 321314 CDS YP_215008.1 62178591 24972..25799 1 NC_006905.1 IPR001525: C-5 cytosine-specific DNA methylase; IPR001829: Bacterial pili assembly chaperone; fimbrial chaperone 25799 bcfB 321314000243 bcfB Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial chaperone YP_215008.1 24972 D 321314 CDS YP_215009.1 62178592 28426..29433 1 NC_006905.1 fimbrial subunit 29433 bcfD 321314000245 bcfD Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial subunit YP_215009.1 28426 D 321314 CDS YP_215010.1 62178593 29434..29979 1 NC_006905.1 fimbrial subunit 29979 bcfE 321314000246 bcfE Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial subunit YP_215010.1 29434 D 321314 CDS YP_215011.1 62178594 29995..30513 1 NC_006905.1 fimbrial subunit 30513 bcfF 321314000247 bcfF Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial subunit YP_215011.1 29995 D 321314 CDS YP_215012.1 62178595 30479..31210 1 NC_006905.1 IPR001829: Bacterial pili assembly chaperone; fimbrial chaperone 31210 bcfG 321314000248 bcfG Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial chaperone YP_215012.1 30479 D 321314 CDS YP_215013.1 62178596 31274..32119 1 NC_006905.1 IPR006663: Thioredoxin domain 2; hypothetical protein 32119 bcfH 321314000249 bcfH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215013.1 31274 D 321314 CDS YP_215014.1 62178597 32158..32445 1 NC_006905.1 hypothetical protein 32445 321314000250 SC0027 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215014.1 32158 D 321314 CDS YP_215015.1 62178598 complement(32545..32994) 1 NC_006905.1 hypothetical protein 32994 321314000251 SC0028 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215015.1 32545 R 321314 CDS YP_215016.1 62178599 33693..33953 1 NC_006905.1 arylsulfatase 33953 asl 321314000252 asl Salmonella enterica subsp. enterica serovar Choleraesuis str. arylsulfatase YP_215016.1 33693 D 321314 CDS YP_215017.1 62178600 33978..34325 1 NC_006905.1 hypothetical protein 34325 321314000253 SC0030 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215017.1 33978 D 321314 CDS YP_215018.1 62178601 34909..35673 1 NC_006905.1 hypothetical protein 35673 yfeN 321314000254 yfeN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215018.1 34909 D 321314 CDS YP_215019.1 62178602 37290..38486 1 NC_006905.1 arylsulfatase regulatory protein 38486 aslB 321314000256 aslB Salmonella enterica subsp. enterica serovar Choleraesuis str. arylsulfatase regulatory protein YP_215019.1 37290 D 321314 CDS YP_215020.1 62178603 38504..39757 1 NC_006905.1 hypothetical protein 39757 321314000257 SC0033 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215020.1 38504 D 321314 CDS YP_215021.1 62178604 40445..41611 1 NC_006905.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 41611 nhaA 321314000259 nhaA Salmonella enterica subsp. enterica serovar Choleraesuis str. pH-dependent sodium/proton antiporter YP_215021.1 40445 D 321314 CDS YP_215022.1 62178605 41673..42572 1 NC_006905.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 42572 nhaR 321314000260 nhaR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional activator NhaR YP_215022.1 41673 D 321314 CDS YP_215023.1 62178606 complement(42627..44666) 1 NC_006905.1 glycosyl hydrolase 44666 321314000261 SC0036 Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl hydrolase YP_215023.1 42627 R 321314 CDS YP_215024.1 62178607 complement(46534..46797) 1 NC_006905.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 46797 rpsT 321314000263 rpsT Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S20 YP_215024.1 46534 R 321314 CDS YP_215025.1 62178608 46903..47118 1 NC_006905.1 hypothetical protein 47118 yaaY 321314000264 yaaY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215025.1 46903 D 321314 CDS YP_215026.1 62178609 47126..48064 1 NC_006905.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 48064 ribF 321314000265 ribF Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional riboflavin kinase/FMN adenylyltransferase YP_215026.1 47126 D 321314 CDS YP_215027.1 62178610 48073..50943 1 NC_006905.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 50943 ileS 321314000266 ileS Salmonella enterica subsp. enterica serovar Choleraesuis str. isoleucyl-tRNA synthetase YP_215027.1 48073 D 321314 CDS YP_215028.1 62178611 50943..51443 1 NC_006905.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 51443 lspA 321314000267 lspA Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein signal peptidase YP_215028.1 50943 D 321314 CDS YP_215029.1 62178612 51598..52047 1 NC_006905.1 IPR001179: Peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 52047 slpA 321314000268 slpA Salmonella enterica subsp. enterica serovar Choleraesuis str. FKBP-type peptidylprolyl isomerase YP_215029.1 51598 D 321314 CDS YP_215030.1 62178613 52050..53000 1 NC_006905.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 53000 ispH 321314000269 ispH Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_215030.1 52050 D 321314 CDS YP_215031.1 62178614 53200..54402 1 NC_006905.1 nitrite reductase 54402 321314000270 SC0044 Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrite reductase YP_215031.1 53200 D 321314 CDS YP_215032.1 62178615 54418..55338 1 NC_006905.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 55338 rihC 321314000271 rihC Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonucleoside hydrolase RihC YP_215032.1 54418 D 321314 CDS YP_215033.1 62178616 complement(55360..56046) 1 NC_006905.1 IPR001789: Response regulator receiver; transcription regulator sensor for citrate 56046 citB 321314000272 citB Salmonella enterica subsp. enterica serovar Choleraesuis str. transcription regulator sensor for citrate YP_215033.1 55360 R 321314 CDS YP_215034.1 62178617 complement(56048..57706) 1 NC_006905.1 IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; transcription regulator, histidine kinase for citrate 57706 citA 321314000273 citA Salmonella enterica subsp. enterica serovar Choleraesuis str. transcription regulator, histidine kinase for citrate YP_215034.1 56048 R 321314 CDS YP_215035.1 62178618 complement(57802..59103) 1 NC_006905.1 oxalacetate decarboxylase subunit beta 59103 oadB 321314000274 oadB Salmonella enterica subsp. enterica serovar Choleraesuis str. oxalacetate decarboxylase subunit beta YP_215035.1 57802 R 321314 CDS YP_215036.1 62178619 complement(59116..60891) 1 NC_006905.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 60891 oadA 321314000275 oadA Salmonella enterica subsp. enterica serovar Choleraesuis str. oxaloacetate decarboxylase YP_215036.1 59116 R 321314 CDS YP_215037.1 62178620 complement(60907..61149) 1 NC_006905.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 61149 oag3 321314000276 oag3 Salmonella enterica subsp. enterica serovar Choleraesuis str. oxaloacetate decarboxylase subunit gamma YP_215037.1 60907 R 321314 CDS YP_215038.1 62178621 complement(61308..62648) 1 NC_006905.1 IPR004679: Citrate carrier protein; citrate-sodium symport 62648 citN 321314000277 citN Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate-sodium symport YP_215038.1 61308 R 321314 CDS YP_215039.1 62178622 62893..63936 1 NC_006905.1 citrate lyase synthetase 63936 citC2 321314000278 citC2 Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate lyase synthetase YP_215039.1 62893 D 321314 CDS YP_215040.1 62178623 63966..64259 1 NC_006905.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 64259 citD2 321314000279 citD2 Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate lyase subunit gamma YP_215040.1 63966 D 321314 CDS YP_215041.1 62178624 64256..65125 1 NC_006905.1 citrate lyase subunit beta 65125 citE2 321314000280 citE2 Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate lyase subunit beta YP_215041.1 64256 D 321314 CDS YP_215042.1 62178625 65136..66656 1 NC_006905.1 bifunctional; citrate lyase subunit alpha/citrate-ACP transferase 66656 citF2 321314000281 citF2 Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate lyase subunit alpha/citrate-ACP transferase YP_215042.1 65136 D 321314 CDS YP_215043.1 62178626 66707..67207 1 NC_006905.1 hypothetical protein 67207 citX2 321314000282 citX2 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215043.1 66707 D 321314 CDS YP_215044.1 62178627 67185..68093 1 NC_006905.1 modifier of citrate lyase 68093 citG2 321314000283 citG2 Salmonella enterica subsp. enterica serovar Choleraesuis str. modifier of citrate lyase YP_215044.1 67185 D 321314 CDS YP_215045.1 62178628 68273..69094 1 NC_006905.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 69094 dapB 321314000284 dapB Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydrodipicolinate reductase YP_215045.1 68273 D 321314 CDS YP_215046.1 62178629 complement(69746..69901) 1 NC_006905.1 hypothetical protein 69901 321314000285 SC0059 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215046.1 69746 R 321314 CDS YP_215047.1 62178630 69959..71107 1 NC_006905.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 71107 carA 321314000286 carA Salmonella enterica subsp. enterica serovar Choleraesuis str. carbamoyl phosphate synthase small subunit YP_215047.1 69959 D 321314 CDS YP_215048.1 62178631 71126..74353 1 NC_006905.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 74353 carB 321314000287 carB Salmonella enterica subsp. enterica serovar Choleraesuis str. carbamoyl phosphate synthase large subunit YP_215048.1 71126 D 321314 CDS YP_215049.1 62178632 74627..75022 1 NC_006905.1 regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; DNA-binding transcriptional activator CaiF 75022 caiF 321314000288 caiF Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator CaiF YP_215049.1 74627 D 321314 CDS YP_215050.1 62178633 complement(75100..75696) 1 NC_006905.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 75696 caiE 321314000289 caiE Salmonella enterica subsp. enterica serovar Choleraesuis str. carnitine operon protein CaiE YP_215050.1 75100 R 321314 CDS YP_215051.1 62178634 complement(75806..76591) 1 NC_006905.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 76591 caiD 321314000290 caiD Salmonella enterica subsp. enterica serovar Choleraesuis str. carnitinyl-CoA dehydratase YP_215051.1 75806 R 321314 CDS YP_215052.1 62178635 complement(76645..78198) 1 NC_006905.1 IPR000873: AMP-dependent synthetase and ligase; crotonobetaine/carnitine-CoA ligase 78198 caiC 321314000291 caiC Salmonella enterica subsp. enterica serovar Choleraesuis str. crotonobetaine/carnitine-CoA ligase YP_215052.1 76645 R 321314 CDS YP_215053.1 62178636 complement(78261..79478) 1 NC_006905.1 catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase 79478 caiB 321314000292 caiB Salmonella enterica subsp. enterica serovar Choleraesuis str. crotonobetainyl-CoA:carnitine CoA-transferase YP_215053.1 78261 R 321314 CDS YP_215054.1 62178637 complement(79590..80732) 1 NC_006905.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 80732 caiA 321314000293 caiA Salmonella enterica subsp. enterica serovar Choleraesuis str. crotonobetainyl-CoA dehydrogenase YP_215054.1 79590 R 321314 CDS YP_215055.1 62178638 complement(80767..82284) 1 NC_006905.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 82284 caiT 321314000294 caiT Salmonella enterica subsp. enterica serovar Choleraesuis str. L-carnitine/gamma-butyrobetaine antiporter YP_215055.1 80767 R 321314 CDS YP_215056.1 62178639 82512..82697 1 NC_006905.1 hypothetical protein 82697 321314000295 SC0069 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215056.1 82512 D 321314 CDS YP_215057.1 62178640 82765..83535 1 NC_006905.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; electron transfer flavoprotein FixA 83535 fixA 321314000296 fixA Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transfer flavoprotein FixA YP_215057.1 82765 D 321314 CDS YP_215058.1 62178641 83551..84492 1 NC_006905.1 involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 84492 fixB 321314000297 fixB Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transfer flavoprotein FixB YP_215058.1 83551 D 321314 CDS YP_215059.1 62178642 84542..85828 1 NC_006905.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 85828 fixC 321314000298 fixC Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase FixC YP_215059.1 84542 D 321314 CDS YP_215060.1 62178643 85825..86112 1 NC_006905.1 ferredoxin, carnitine metabolism 86112 fixX 321314000299 fixX Salmonella enterica subsp. enterica serovar Choleraesuis str. ferredoxin, carnitine metabolism YP_215060.1 85825 D 321314 CDS YP_215061.1 62178644 86259..87599 1 NC_006905.1 IPR003663: Sugar transporter; IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; MFS family transporter 87599 yaaU 321314000300 yaaU Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter YP_215061.1 86259 D 321314 CDS YP_215062.1 62178645 87688..87918 1 NC_006905.1 outer membrane lipoprotein 87918 ygdI 321314000301 ygdI Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_215062.1 87688 D 321314 CDS YP_215063.1 62178646 88203..88619 1 NC_006905.1 hypothetical protein 88619 321314000302 SC0076 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215063.1 88203 D 321314 CDS YP_215064.1 62178647 complement(88842..89132) 1 NC_006905.1 hypothetical protein 89132 321314000303 SC0077 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215064.1 88842 R 321314 CDS YP_215065.1 62178648 89342..89536 1 NC_006905.1 inner membrane protein 89536 cysB 321314000304 cysB Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215065.1 89342 D 321314 CDS YP_215066.1 62178649 90030..91919 1 NC_006905.1 sulfatase 91919 321314000305 SC0079 Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfatase YP_215066.1 90030 D 321314 CDS YP_215067.1 62178650 92473..93003 1 NC_006905.1 Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 93003 yabF 321314000306 yabF Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione-regulated potassium-efflux system ancillary protein KefF YP_215067.1 92473 D 321314 CDS YP_215068.1 62178651 92996..94858 1 NC_006905.1 transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 94858 kefC 321314000307 kefC Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione-regulated potassium-efflux system protein KefC YP_215068.1 92996 D 321314 CDS YP_215069.1 62178652 95057..95536 1 NC_006905.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 95536 folA 321314000308 folA Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydrofolate reductase YP_215069.1 95057 D 321314 CDS YP_215070.1 62178653 complement(95642..96490) 1 NC_006905.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 96490 apaH 321314000309 apaH Salmonella enterica subsp. enterica serovar Choleraesuis str. diadenosine tetraphosphatase YP_215070.1 95642 R 321314 CDS YP_215071.1 62178654 complement(96501..96878) 1 NC_006905.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 96878 apaG 321314000310 apaG Salmonella enterica subsp. enterica serovar Choleraesuis str. ApaG protein YP_215071.1 96501 R 321314 CDS YP_215072.1 62178655 complement(96881..97702) 1 NC_006905.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 97702 ksgA 321314000311 ksgA Salmonella enterica subsp. enterica serovar Choleraesuis str. dimethyladenosine transferase YP_215072.1 96881 R 321314 CDS YP_215073.1 62178656 complement(97699..98688) 1 NC_006905.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 98688 pdxA 321314000312 pdxA Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxythreonine-4-phosphate dehydrogenase YP_215073.1 97699 R 321314 CDS YP_215074.1 62178657 complement(98688..99974) 1 NC_006905.1 Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA 99974 surA 321314000313 surA Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidyl-prolyl cis-trans isomerase SurA YP_215074.1 98688 R 321314 CDS YP_215075.1 62178658 complement(100028..102388) 1 NC_006905.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 102388 imp 321314000314 imp Salmonella enterica subsp. enterica serovar Choleraesuis str. organic solvent tolerance protein YP_215075.1 100028 R 321314 CDS YP_215076.1 62178659 102642..103454 1 NC_006905.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 103454 djlA 321314000315 djlA Salmonella enterica subsp. enterica serovar Choleraesuis str. Dna-J like membrane chaperone protein YP_215076.1 102642 D 321314 CDS YP_215077.1 62178660 complement(103549..104208) 1 NC_006905.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A 104208 rluA 321314000316 rluA Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA/tRNA pseudouridine synthase A YP_215077.1 103549 R 321314 CDS YP_215078.1 62178661 complement(104220..107126) 1 NC_006905.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 107126 hepA 321314000317 hepA Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent helicase HepA YP_215078.1 104220 R 321314 CDS YP_215079.1 62178662 complement(107300..109651) 1 NC_006905.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 109651 polB 321314000318 polB Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase II YP_215079.1 107300 R 321314 CDS YP_215080.1 62178663 complement(109695..110315) 1 NC_006905.1 hypothetical protein 110315 321314000319 SC0093 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215080.1 109695 R 321314 CDS YP_215081.1 62178664 110833..111252 1 NC_006905.1 hypothetical protein 111252 321314000320 SC0094 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215081.1 110833 D 321314 CDS YP_215082.1 62178665 complement(111258..111953) 1 NC_006905.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 111953 araD 321314000321 araD Salmonella enterica subsp. enterica serovar Choleraesuis str. L-ribulose-5-phosphate 4-epimerase YP_215082.1 111258 R 321314 CDS YP_215083.1 62178666 complement(112094..113596) 1 NC_006905.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 113596 araA 321314000322 araA Salmonella enterica subsp. enterica serovar Choleraesuis str. L-arabinose isomerase YP_215083.1 112094 R 321314 CDS YP_215084.1 62178667 113546..113845 1 NC_006905.1 hypothetical protein 113845 321314000323 SC0097 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215084.1 113546 D 321314 CDS YP_215085.1 62178668 115653..116498 1 NC_006905.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 116498 araC 321314000325 araC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator AraC YP_215085.1 115653 D 321314 CDS YP_215086.1 62178669 116617..117384 1 NC_006905.1 DedA family membrane protein 117384 yabI 321314000326 yabI Salmonella enterica subsp. enterica serovar Choleraesuis str. DedA family membrane protein YP_215086.1 116617 D 321314 CDS YP_215087.1 62178670 complement(117423..118130) 1 NC_006905.1 with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit 118130 thiQ 321314000327 thiQ Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine transporter ATP-binding subunit YP_215087.1 117423 R 321314 CDS YP_215088.1 62178671 complement(118114..119724) 1 NC_006905.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 119724 thiP 321314000328 thiP Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine transporter membrane protein YP_215088.1 118114 R 321314 CDS YP_215089.1 62178672 complement(119700..120683) 1 NC_006905.1 part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 120683 tbpA 321314000329 tbpA Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine transporter substrate binding subunit YP_215089.1 119700 R 321314 CDS YP_215090.1 62178673 complement(120861..122519) 1 NC_006905.1 activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR 122519 yabN 321314000330 yabN Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator SgrR YP_215090.1 120861 R 321314 CDS YP_215091.1 62178674 122588..122734 1 NC_006905.1 hypothetical protein 122734 leuD 321314000331 leuD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215091.1 122588 D 321314 CDS YP_215092.1 62178675 123054..123335 1 NC_006905.1 hypothetical protein 123335 321314000332 SC0105 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215092.1 123054 D 321314 CDS YP_215093.1 62178676 complement(123389..123994) 1 NC_006905.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 123994 leuD 321314000333 leuD Salmonella enterica subsp. enterica serovar Choleraesuis str. isopropylmalate isomerase small subunit YP_215093.1 123389 R 321314 CDS YP_215094.1 62178677 complement(124005..125405) 1 NC_006905.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 125405 leuC 321314000334 leuC Salmonella enterica subsp. enterica serovar Choleraesuis str. isopropylmalate isomerase large subunit YP_215094.1 124005 R 321314 CDS YP_215095.1 62178678 complement(125408..126499) 1 NC_006905.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 126499 leuB 321314000335 leuB Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-isopropylmalate dehydrogenase YP_215095.1 125408 R 321314 CDS YP_215096.1 62178679 complement(126499..128070) 1 NC_006905.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 128070 leuA 321314000336 leuA Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-isopropylmalate synthase YP_215096.1 126499 R 321314 CDS YP_215097.1 62178680 complement(128158..128244) 1 NC_006905.1 involved in attenuation control of the leuABCD operon in leucine biosynthesis; leu operon leader peptide 128244 leuL 321314000337 leuL Salmonella enterica subsp. enterica serovar Choleraesuis str. leu operon leader peptide YP_215097.1 128158 R 321314 CDS YP_215098.1 62178681 128499..128597 1 NC_006905.1 hypothetical protein 128597 321314000338 SC0111 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215098.1 128499 D 321314 CDS YP_215099.1 62178682 128687..128830 1 NC_006905.1 hypothetical protein 128830 321314000339 SC0112 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215099.1 128687 D 321314 CDS YP_215100.2 162139624 130167..131891 1 NC_006905.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 131891 ilvI 321314000341 ilvI Salmonella enterica subsp. enterica serovar Choleraesuis str. acetolactate synthase 3 catalytic subunit YP_215100.2 130167 D 321314 CDS YP_215101.1 62178684 131891..132385 1 NC_006905.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 132385 ilvH 321314000342 ilvH Salmonella enterica subsp. enterica serovar Choleraesuis str. acetolactate synthase 3 regulatory subunit YP_215101.1 131891 D 321314 CDS YP_215102.1 62178685 132669..133673 1 NC_006905.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 133673 fruR 321314000343 fruR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator FruR YP_215102.1 132669 D 321314 CDS YP_215103.1 62178686 134279..134737 1 NC_006905.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 134737 yabB 321314000344 yabB Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein MraZ YP_215103.1 134279 D 321314 CDS YP_215104.1 62178687 134742..135680 1 NC_006905.1 IPR002903: Bacterial methyltransferase; S-adenosyl-methyltransferase MraW 135680 mraW 321314000345 mraW Salmonella enterica subsp. enterica serovar Choleraesuis str. S-adenosyl-methyltransferase MraW YP_215104.1 134742 D 321314 CDS YP_215105.1 62178688 135677..136042 1 NC_006905.1 membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 136042 ftsL 321314000346 ftsL Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein FtsL YP_215105.1 135677 D 321314 CDS YP_215106.1 62178689 136058..137824 1 NC_006905.1 division specific transpeptidase, penicillin-binding protein 3 re 137824 ftsI 321314000347 ftsI Salmonella enterica subsp. enterica serovar Choleraesuis str. division specific transpeptidase, penicillin-binding protein 3 re YP_215106.1 136058 D 321314 CDS YP_215107.1 62178690 137811..139298 1 NC_006905.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 139298 murE 321314000348 murE Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_215107.1 137811 D 321314 CDS YP_215108.1 62178691 139295..140653 1 NC_006905.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 140653 murF 321314000349 murF Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_215108.1 139295 D 321314 CDS YP_215109.1 62178692 140647..141729 1 NC_006905.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 141729 mraY 321314000350 mraY Salmonella enterica subsp. enterica serovar Choleraesuis str. phospho-N-acetylmuramoyl-pentapeptide- transferase YP_215109.1 140647 D 321314 CDS YP_215110.1 62178693 141732..143048 1 NC_006905.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 143048 murD 321314000351 murD Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_215110.1 141732 D 321314 CDS YP_215111.1 62178694 143048..144292 1 NC_006905.1 integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 144292 ftsW 321314000352 ftsW Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein FtsW YP_215111.1 143048 D 321314 CDS YP_215112.1 62178695 144289..145356 1 NC_006905.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 145356 murG 321314000353 murG Salmonella enterica subsp. enterica serovar Choleraesuis str. undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_215112.1 144289 D 321314 CDS YP_215113.1 62178696 145475..146950 1 NC_006905.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 146950 murC 321314000354 murC Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetylmuramate--L-alanine ligase YP_215113.1 145475 D 321314 CDS YP_215114.1 62178697 146943..147863 1 NC_006905.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 147863 ddl 321314000355 ddl Salmonella enterica subsp. enterica serovar Choleraesuis str. D-alanine--D-alanine ligase YP_215114.1 146943 D 321314 CDS YP_215115.1 62178698 147865..148695 1 NC_006905.1 involved in septum formation; cell division protein FtsQ 148695 ftsQ 321314000356 ftsQ Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein FtsQ YP_215115.1 147865 D 321314 CDS YP_215116.1 62178699 148692..149954 1 NC_006905.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 149954 ftsA 321314000357 ftsA Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein FtsA YP_215116.1 148692 D 321314 CDS YP_215117.1 62178700 150015..151166 1 NC_006905.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 151166 ftsZ 321314000358 ftsZ Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein FtsZ YP_215117.1 150015 D 321314 CDS YP_215118.1 62178701 151267..152184 1 NC_006905.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 152184 lpxC 321314000359 lpxC Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_215118.1 151267 D 321314 CDS YP_215119.1 62178702 152463..152960 1 NC_006905.1 secM translational pause allows for the initiation of secA translation; SecA regulator SecM 152960 yacA 321314000360 yacA Salmonella enterica subsp. enterica serovar Choleraesuis str. SecA regulator SecM YP_215119.1 152463 D 321314 CDS YP_215120.1 62178703 153022..155727 1 NC_006905.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 155727 secA 321314000361 secA Salmonella enterica subsp. enterica serovar Choleraesuis str. preprotein translocase subunit SecA YP_215120.1 153022 D 321314 CDS YP_215121.1 62178704 155879..156274 1 NC_006905.1 IPR000086: NUDIX hydrolase; IPR003561: Mutator MutT; nucleoside triphosphate pyrophosphohydrolase 156274 mutT 321314000362 mutT Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleoside triphosphate pyrophosphohydrolase YP_215121.1 155879 D 321314 CDS YP_215122.1 62178705 complement(156308..157297) 1 NC_006905.1 IPR001395: Aldo/keto reductase; aldo/keto reductase 157297 akr 321314000363 akr Salmonella enterica subsp. enterica serovar Choleraesuis str. aldo/keto reductase YP_215122.1 156308 R 321314 CDS YP_215123.1 62178706 157383..158324 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; LysR family transcriptional regulator 158324 lysR 321314000364 lysR Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_215123.1 157383 D 321314 CDS YP_215124.1 62178707 complement(158321..158512) 1 NC_006905.1 zinc-binding protein 158512 yacG 321314000365 yacG Salmonella enterica subsp. enterica serovar Choleraesuis str. zinc-binding protein YP_215124.1 158321 R 321314 CDS YP_215125.1 62178708 complement(158522..159265) 1 NC_006905.1 hypothetical protein 159265 yacF 321314000366 yacF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215125.1 158522 R 321314 CDS YP_215126.1 62178709 complement(159265..159885) 1 NC_006905.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 159885 coaE 321314000367 coaE Salmonella enterica subsp. enterica serovar Choleraesuis str. dephospho-CoA kinase YP_215126.1 159265 R 321314 CDS YP_215127.1 62178710 160111..161154 1 NC_006905.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 161154 guaC 321314000368 guaC Salmonella enterica subsp. enterica serovar Choleraesuis str. guanosine 5'-monophosphate oxidoreductase YP_215127.1 160111 D 321314 CDS YP_215128.1 62178711 complement(161185..162387) 1 NC_006905.1 IPR003004: Bacterial general secretion pathway protein F; type IV pilin biogenesis protein 162387 hofC 321314000369 hofC Salmonella enterica subsp. enterica serovar Choleraesuis str. type IV pilin biogenesis protein YP_215128.1 161185 R 321314 CDS YP_215129.1 62178712 complement(162377..163762) 1 NC_006905.1 IPR001482: Bacterial type II secretion system protein E; hypothetical protein 163762 hofB 321314000370 hofB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215129.1 162377 R 321314 CDS YP_215130.1 62178713 complement(163772..164209) 1 NC_006905.1 IPR001082: Fimbrial protein pilin; IPR001120: Prokaryotic N-terminal methylation site; major pilin subunit 164209 ppdD 321314000371 ppdD Salmonella enterica subsp. enterica serovar Choleraesuis str. major pilin subunit YP_215130.1 163772 R 321314 CDS YP_215131.2 162139623 complement(164431..165324) 1 NC_006905.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 165324 nadC 321314000372 nadC Salmonella enterica subsp. enterica serovar Choleraesuis str. quinolinate phosphoribosyltransferase YP_215131.2 164431 R 321314 CDS YP_215132.1 62178715 165412..165975 1 NC_006905.1 N-acetyl-anhydromuranmyl-L-alanine amidase 165975 ampD 321314000373 ampD Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetyl-anhydromuranmyl-L-alanine amidase YP_215132.1 165412 D 321314 CDS YP_215133.1 62178716 165972..166826 1 NC_006905.1 involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 166826 ampE 321314000374 ampE Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein AmpE YP_215133.1 165972 D 321314 CDS YP_215134.1 62178717 complement(166918..167868) 1 NC_006905.1 hypothetical protein 167868 abf2 321314000375 abf2 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215134.1 166918 R 321314 CDS YP_215135.1 62178718 complement(167868..169274) 1 NC_006905.1 IPR001092: Basic helix-loop-helix dimerization domain bHLH; Na+:galactoside symporter family permease 169274 yicJ 321314000376 yicJ Salmonella enterica subsp. enterica serovar Choleraesuis str. Na+:galactoside symporter family permease YP_215135.1 167868 R 321314 CDS YP_215136.1 62178719 complement(169438..170811) 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; IPR004840: Amino acid permease; aromatic amino acid transporter 170811 aroP 321314000377 aroP Salmonella enterica subsp. enterica serovar Choleraesuis str. aromatic amino acid transporter YP_215136.1 169438 R 321314 CDS YP_215137.1 62178720 171374..172138 1 NC_006905.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 172138 pdhR 321314000378 pdhR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator PdhR YP_215137.1 171374 D 321314 CDS YP_215138.1 62178721 172298..174961 1 NC_006905.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 174961 aceE 321314000379 aceE Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate dehydrogenase subunit E1 YP_215138.1 172298 D 321314 CDS YP_215139.1 62178722 174976..176559 1 NC_006905.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; dihydrolipoamide acetyltransferase 176559 aceF 321314000380 aceF Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydrolipoamide acetyltransferase YP_215139.1 174976 D 321314 CDS YP_215140.1 62178723 176758..178185 1 NC_006905.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 178185 lpdA 321314000381 lpdA Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydrolipoamide dehydrogenase YP_215140.1 176758 D 321314 CDS YP_215141.1 62178724 178474..178758 1 NC_006905.1 outer membrane protein 178758 321314000382 SC0154 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_215141.1 178474 D 321314 CDS YP_215142.1 62178725 complement(178796..179587) 1 NC_006905.1 hypothetical protein 179587 321314000383 SC0155 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215142.1 178796 R 321314 CDS YP_215143.1 62178726 complement(179600..181219) 1 NC_006905.1 hypothetical protein 181219 yacH 321314000384 yacH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215143.1 179600 R 321314 CDS YP_215144.1 62178727 181608..184205 1 NC_006905.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 184205 acnB 321314000385 acnB Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_215144.1 181608 D 321314 CDS YP_215145.1 62178728 complement(184245..184709) 1 NC_006905.1 might be involved in hypersensitivity to nitrofurzone; inner membrane protein 184709 yieI 321314000386 yieI Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215145.1 184245 R 321314 CDS YP_215146.1 62178729 complement(185119..185442) 1 NC_006905.1 phosphotyrosine protein phosphatase 185442 ptp 321314000387 ptp Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotyrosine protein phosphatase YP_215146.1 185119 R 321314 CDS YP_215147.2 162139622 185713..186075 1 NC_006905.1 hypothetical protein 186075 yacL 321314000388 yacL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215147.2 185713 D 321314 CDS YP_215148.1 62178731 186310..187263 1 NC_006905.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 187263 kdgT 321314000389 kdgT Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-keto-3-deoxygluconate permease YP_215148.1 186310 D 321314 CDS YP_215149.1 62178732 187260..188531 1 NC_006905.1 inner membrane protein 188531 ygbK 321314000390 ygbK Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215149.1 187260 D 321314 CDS YP_215150.1 62178733 188521..189504 1 NC_006905.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 189504 pdxA 321314000391 pdxA Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxythreonine-4-phosphate dehydrogenase YP_215150.1 188521 D 321314 CDS YP_215151.1 62178734 189514..190281 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; LysR family transcriptional regulator 190281 ygbI 321314000392 ygbI Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_215151.1 189514 D 321314 CDS YP_215152.1 62178735 complement(190311..191105) 1 NC_006905.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 191105 speD 321314000393 speD Salmonella enterica subsp. enterica serovar Choleraesuis str. S-adenosylmethionine decarboxylase YP_215152.1 190311 R 321314 CDS YP_215153.1 62178736 complement(191126..191986) 1 NC_006905.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 191986 speE 321314000394 speE Salmonella enterica subsp. enterica serovar Choleraesuis str. spermidine synthase YP_215153.1 191126 R 321314 CDS YP_215154.1 62178737 complement(192093..192440) 1 NC_006905.1 hypothetical protein 192440 yacC 321314000395 yacC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215154.1 192093 R 321314 CDS YP_215155.1 62178738 192642..194252 1 NC_006905.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 194252 cueO 321314000396 cueO Salmonella enterica subsp. enterica serovar Choleraesuis str. multicopper oxidase YP_215155.1 192642 D 321314 CDS YP_215156.1 62178739 complement(194330..196738) 1 NC_006905.1 IPR001479: Bacterial quinoprotein dehydrogenase; glucose dehydrogenase 196738 gcd 321314000397 gcd Salmonella enterica subsp. enterica serovar Choleraesuis str. glucose dehydrogenase YP_215156.1 194330 R 321314 CDS YP_215157.2 162139621 196926..197462 1 NC_006905.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 197462 hpt 321314000398 hpt Salmonella enterica subsp. enterica serovar Choleraesuis str. hypoxanthine-guanine phosphoribosyltransferase YP_215157.2 196926 D 321314 CDS YP_215158.2 162139620 complement(197520..198182) 1 NC_006905.1 catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase 198182 yadF 321314000399 yadF Salmonella enterica subsp. enterica serovar Choleraesuis str. carbonic anhydrase YP_215158.2 197520 R 321314 CDS YP_215159.1 62178742 198291..199217 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; multidrug ABC transporter ATPase 199217 yadG 321314000400 yadG Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug ABC transporter ATPase YP_215159.1 198291 D 321314 CDS YP_215160.1 62178743 199214..199984 1 NC_006905.1 IPR000412: ABC transporter family 2; ABC transporter membrane protein 199984 yadH 321314000401 yadH Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter membrane protein YP_215160.1 199214 D 321314 CDS YP_215161.1 62178744 complement(200101..201180) 1 NC_006905.1 IPR000259: Fimbrial protein; fimbriae 201180 stiH 321314000402 stiH Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbriae YP_215161.1 200101 R 321314 CDS YP_215162.1 62178745 complement(201189..203732) 1 NC_006905.1 fimbrial usher 203732 stiC 321314000403 stiC Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial usher YP_215162.1 201189 R 321314 CDS YP_215163.1 62178746 complement(203759..204442) 1 NC_006905.1 IPR001829: Bacterial pili assembly chaperone; fimbrial chaperone 204442 stiB 321314000404 stiB Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial chaperone YP_215163.1 203759 R 321314 CDS YP_215164.1 62178747 complement(204490..205029) 1 NC_006905.1 fimbrial subunit 205029 stiA 321314000405 stiA Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial subunit YP_215164.1 204490 R 321314 CDS YP_215165.1 62178748 205399..205839 1 NC_006905.1 PTS sugar transporter subunit IIA 205839 yadI 321314000406 yadI Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS sugar transporter subunit IIA YP_215165.1 205399 D 321314 CDS YP_215166.1 62178749 205901..207130 1 NC_006905.1 hypothetical protein 207130 yadE 321314000407 yadE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215166.1 205901 D 321314 CDS YP_215167.1 62178750 complement(207137..207517) 1 NC_006905.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 207517 panD 321314000408 panD Salmonella enterica subsp. enterica serovar Choleraesuis str. aspartate alpha-decarboxylase YP_215167.1 207137 R 321314 CDS YP_215168.1 62178751 complement(207612..208466) 1 NC_006905.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 208466 panC 321314000409 panC Salmonella enterica subsp. enterica serovar Choleraesuis str. pantoate--beta-alanine ligase YP_215168.1 207612 R 321314 CDS YP_215169.1 62178752 complement(208592..209383) 1 NC_006905.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 209383 panB 321314000410 panB Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_215169.1 208592 R 321314 CDS YP_215170.1 62178753 complement(209504..209983) 1 NC_006905.1 catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 209983 folK 321314000411 folK Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_215170.1 209504 R 321314 CDS YP_215171.1 62178754 complement(209980..211398) 1 NC_006905.1 Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase 211398 pcnB 321314000412 pcnB Salmonella enterica subsp. enterica serovar Choleraesuis str. poly(A) polymerase YP_215171.1 209980 R 321314 CDS YP_215172.2 162139619 complement(211539..212435) 1 NC_006905.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 212435 yadB 321314000413 yadB Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamyl-Q tRNA(Asp) synthetase YP_215172.2 211539 R 321314 CDS YP_215173.2 162139618 complement(212504..212959) 1 NC_006905.1 IPR000962: Zn-finger, prokaryotic DksA/TraR C4 type; RNA polymerase-binding transcription factor 212959 dksA 321314000414 dksA Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA polymerase-binding transcription factor YP_215173.2 212504 R 321314 CDS YP_215174.1 62178757 complement(213136..213840) 1 NC_006905.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 213840 sfsA 321314000415 sfsA Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar fermentation stimulation protein A YP_215174.1 213136 R 321314 CDS YP_215175.1 62178758 complement(213857..214387) 1 NC_006905.1 2'-5' RNA ligase 214387 ligT 321314000416 ligT Salmonella enterica subsp. enterica serovar Choleraesuis str. 2'-5' RNA ligase YP_215175.1 213857 R 321314 CDS YP_215176.1 62178759 214415..216889 1 NC_006905.1 similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 216889 hrpB 321314000417 hrpB Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent RNA helicase HrpB YP_215176.1 214415 D 321314 CDS YP_215177.1 62178760 217030..219552 1 NC_006905.1 bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b 219552 mrcB 321314000418 mrcB Salmonella enterica subsp. enterica serovar Choleraesuis str. penicillin-binding protein 1b YP_215177.1 217030 D 321314 CDS YP_215178.1 62178761 219845..222034 1 NC_006905.1 involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 222034 fhuA 321314000419 fhuA Salmonella enterica subsp. enterica serovar Choleraesuis str. ferrichrome outer membrane transporter YP_215178.1 219845 D 321314 CDS YP_215179.2 162139617 222083..222880 1 NC_006905.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 222880 fhuC 321314000420 fhuC Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-hydroxamate transporter ATP-binding subunit YP_215179.2 222083 D 321314 CDS YP_215180.1 62178763 222880..223770 1 NC_006905.1 Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 223770 fhuD 321314000421 fhuD Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-hydroxamate transporter substrate-binding subunit YP_215180.1 222880 D 321314 CDS YP_215181.1 62178764 223767..225824 1 NC_006905.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 225824 fhuB 321314000422 fhuB Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-hydroxamate transporter permease subunit YP_215181.1 223767 D 321314 CDS YP_215182.1 62178765 226764..227324 1 NC_006905.1 fimbrial subunit 227324 stfA 321314000423 stfA Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial subunit YP_215182.1 226764 D 321314 CDS YP_215183.1 62178766 227410..230067 1 NC_006905.1 IPR000015: Fimbrial biogenesis outer membrane usher protein; IPR002092: DNA-directed RNA polymerase, bacteriophage type; fimbrial outer membrane usher 230067 stfC 321314000424 stfC Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial outer membrane usher YP_215183.1 227410 D 321314 CDS YP_215184.1 62178767 230085..230837 1 NC_006905.1 IPR001829: Bacterial pili assembly chaperone; periplasmic fimbrial chaperone 230837 stfD 321314000425 stfD Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic fimbrial chaperone YP_215184.1 230085 D 321314 CDS YP_215185.1 62178768 230856..231368 1 NC_006905.1 minor fimbrial subunit 231368 stfE 321314000426 stfE Salmonella enterica subsp. enterica serovar Choleraesuis str. minor fimbrial subunit YP_215185.1 230856 D 321314 CDS YP_215186.1 62178769 231365..231841 1 NC_006905.1 IPR000259: Fimbrial protein; minor fimbrial subunit 231841 stfF 321314000427 stfF Salmonella enterica subsp. enterica serovar Choleraesuis str. minor fimbrial subunit YP_215186.1 231365 D 321314 CDS YP_215187.1 62178770 231841..232371 1 NC_006905.1 minor fimbrial subuni 232371 stfG 321314000428 stfG Salmonella enterica subsp. enterica serovar Choleraesuis str. minor fimbrial subuni YP_215187.1 231841 D 321314 CDS YP_215188.1 62178771 232371..233216 1 NC_006905.1 hypothetical protein 233216 yadU 321314000429 yadU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215188.1 232371 D 321314 CDS YP_215189.1 62178772 complement(233324..234604) 1 NC_006905.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 234604 hemL 321314000430 hemL Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate-1-semialdehyde aminotransferase YP_215189.1 233324 R 321314 CDS YP_215190.1 62178773 234774..236195 1 NC_006905.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 236195 yadQ 321314000431 yadQ Salmonella enterica subsp. enterica serovar Choleraesuis str. chloride channel protein YP_215190.1 234774 D 321314 CDS YP_215191.1 62178774 236232..236621 1 NC_006905.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 236621 yadR 321314000432 yadR Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-sulfur cluster insertion protein ErpA YP_215191.1 236232 D 321314 CDS YP_215192.1 62178775 complement(236722..237345) 1 NC_006905.1 hypothetical protein 237345 yadS 321314000433 yadS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215192.1 236722 R 321314 CDS YP_215193.1 62178776 complement(237382..238182) 1 NC_006905.1 solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF 238182 btuF 321314000434 btuF Salmonella enterica subsp. enterica serovar Choleraesuis str. vitamin B12-transporter protein BtuF YP_215193.1 237382 R 321314 CDS YP_215194.1 62178777 complement(238175..238873) 1 NC_006905.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 238873 pfs 321314000435 pfs Salmonella enterica subsp. enterica serovar Choleraesuis str. 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_215194.1 238175 R 321314 CDS YP_215195.1 62178778 238958..240475 1 NC_006905.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 240475 dgt 321314000436 dgt Salmonella enterica subsp. enterica serovar Choleraesuis str. deoxyguanosinetriphosphate triphosphohydrolase YP_215195.1 238958 D 321314 CDS YP_215196.1 62178779 240596..242032 1 NC_006905.1 protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 242032 htrA 321314000437 htrA Salmonella enterica subsp. enterica serovar Choleraesuis str. serine endoprotease YP_215196.1 240596 D 321314 CDS YP_215197.1 62178780 242185..243342 1 NC_006905.1 regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 243342 cdaR 321314000438 cdaR Salmonella enterica subsp. enterica serovar Choleraesuis str. carbohydrate diacid transcriptional activator CdaR YP_215197.1 242185 D 321314 CDS YP_215198.1 62178781 complement(243431..243817) 1 NC_006905.1 hypothetical protein 243817 yaeH 321314000439 yaeH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215198.1 243431 R 321314 CDS YP_215199.1 62178782 244064..245365 1 NC_006905.1 IPR007114: Major facilitator superfamily; inner membrane protein 245365 shiA 321314000440 shiA Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215199.1 244064 D 321314 CDS YP_215200.1 62178783 complement(245402..246226) 1 NC_006905.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 246226 dapD 321314000441 dapD Salmonella enterica subsp. enterica serovar Choleraesuis str. 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_215200.1 245402 R 321314 CDS YP_215201.1 62178784 complement(246256..248928) 1 NC_006905.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 248928 glnD 321314000442 glnD Salmonella enterica subsp. enterica serovar Choleraesuis str. PII uridylyl-transferase YP_215201.1 246256 R 321314 CDS YP_215202.1 62178785 complement(249041..249835) 1 NC_006905.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 249835 map 321314000443 map Salmonella enterica subsp. enterica serovar Choleraesuis str. methionine aminopeptidase YP_215202.1 249041 R 321314 CDS YP_215203.1 62178786 250286..251011 1 NC_006905.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 251011 rpsB 321314000444 rpsB Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S2 YP_215203.1 250286 D 321314 CDS YP_215204.2 162139616 251269..252120 1 NC_006905.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 252120 tsf 321314000445 tsf Salmonella enterica subsp. enterica serovar Choleraesuis str. elongation factor Ts YP_215204.2 251269 D 321314 CDS YP_215205.1 62178788 252265..252990 1 NC_006905.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 252990 pyrH 321314000446 pyrH Salmonella enterica subsp. enterica serovar Choleraesuis str. uridylate kinase YP_215205.1 252265 D 321314 CDS YP_215206.1 62178789 253137..253694 1 NC_006905.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 253694 frr 321314000447 frr Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosome recycling factor YP_215206.1 253137 D 321314 CDS YP_215207.1 62178790 253894..255033 1 NC_006905.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 255033 dxr 321314000448 dxr Salmonella enterica subsp. enterica serovar Choleraesuis str. 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_215207.1 253894 D 321314 CDS YP_215208.1 62178791 255346..256104 1 NC_006905.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 256104 uppS 321314000449 uppS Salmonella enterica subsp. enterica serovar Choleraesuis str. undecaprenyl pyrophosphate synthase YP_215208.1 255346 D 321314 CDS YP_215209.2 162139615 256117..256974 1 NC_006905.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 256974 cdsA 321314000450 cdsA Salmonella enterica subsp. enterica serovar Choleraesuis str. CDP-diglyceride synthase YP_215209.2 256117 D 321314 CDS YP_215210.1 62178793 256986..258338 1 NC_006905.1 catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 258338 yaeL 321314000451 yaeL Salmonella enterica subsp. enterica serovar Choleraesuis str. zinc metallopeptidase RseP YP_215210.1 256986 D 321314 CDS YP_215211.1 62178794 258370..260787 1 NC_006905.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 260787 yaeT 321314000452 yaeT Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein assembly factor YaeT YP_215211.1 258370 D 321314 CDS YP_215212.1 62178795 260910..261395 1 NC_006905.1 IPR005632: Outer membrane protein (OmpH-like); periplasmic chaperone 261395 hlpA 321314000453 hlpA Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic chaperone YP_215212.1 260910 D 321314 CDS YP_215213.1 62178796 261399..262424 1 NC_006905.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 262424 lpxD 321314000454 lpxD Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_215213.1 261399 D 321314 CDS YP_215214.1 62178797 262440..262985 1 NC_006905.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 262985 fabZ 321314000455 fabZ Salmonella enterica subsp. enterica serovar Choleraesuis str. (3R)-hydroxymyristoyl-ACP dehydratase YP_215214.1 262440 D 321314 CDS YP_215215.1 62178798 262989..263777 1 NC_006905.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 263777 lpxA 321314000456 lpxA Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetylglucosamine acyltransferase YP_215215.1 262989 D 321314 CDS YP_215216.1 62178799 263777..264925 1 NC_006905.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 264925 lpxB 321314000457 lpxB Salmonella enterica subsp. enterica serovar Choleraesuis str. lipid-A-disaccharide synthase YP_215216.1 263777 D 321314 CDS YP_215217.1 62178800 264922..265518 1 NC_006905.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 265518 rnhB 321314000458 rnhB Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease HII YP_215217.1 264922 D 321314 CDS YP_215218.1 62178801 265542..269024 1 NC_006905.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 269024 dnaE 321314000459 dnaE Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase III subunit alpha YP_215218.1 265542 D 321314 CDS YP_215219.1 62178802 269037..269996 1 NC_006905.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 269996 accA 321314000460 accA Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_215219.1 269037 D 321314 CDS YP_215220.1 62178803 270177..271940 1 NC_006905.1 IPR000726: Glycoside hydrolase, family 19; endochitinase 271940 chi2 321314000461 chi2 Salmonella enterica subsp. enterica serovar Choleraesuis str. endochitinase YP_215220.1 270177 D 321314 CDS YP_215221.1 62178804 272016..274157 1 NC_006905.1 IPR000310: Orn/Lys/Arg decarboxylase, major region; lysine decarboxylase 2, constitutive 274157 ldcC 321314000462 ldcC Salmonella enterica subsp. enterica serovar Choleraesuis str. lysine decarboxylase 2, constitutive YP_215221.1 272016 D 321314 CDS YP_215222.1 62178805 274213..274602 1 NC_006905.1 IPR004361: Glyoxalase I; hypothetical protein 274602 yaeR 321314000463 yaeR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215222.1 274213 D 321314 CDS YP_215223.1 62178806 274665..275957 1 NC_006905.1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 275957 tilS 321314000464 tilS Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA(Ile)-lysidine synthetase YP_215223.1 274665 D 321314 CDS YP_215224.1 62178807 complement(276041..276301) 1 NC_006905.1 Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator 276301 rof 321314000465 rof Salmonella enterica subsp. enterica serovar Choleraesuis str. Rho-binding antiterminator YP_215224.1 276041 R 321314 CDS YP_215225.1 62178808 complement(276288..276488) 1 NC_006905.1 hypothetical protein 276488 yaeP 321314000466 yaeP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215225.1 276288 R 321314 CDS YP_215226.1 62178809 276686..277231 1 NC_006905.1 hypothetical protein 277231 yaeQ 321314000467 yaeQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215226.1 276686 D 321314 CDS YP_215227.1 62178810 277228..277650 1 NC_006905.1 IPR000352: Class I peptide chain release factor domain; peptidyl-tRNA hydrolase domain-containing protein 277650 yaeJ 321314000468 yaeJ Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidyl-tRNA hydrolase domain-containing protein YP_215227.1 277228 D 321314 CDS YP_215228.2 162139614 complement(278453..280171) 1 NC_006905.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 280171 proS 321314000470 proS Salmonella enterica subsp. enterica serovar Choleraesuis str. prolyl-tRNA synthetase YP_215228.2 278453 R 321314 CDS YP_215229.1 62178812 complement(280282..280989) 1 NC_006905.1 IPR001378: Protein of unknown function, UPF0066; hypothetical protein 280989 yaeB 321314000471 yaeB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215229.1 280282 R 321314 CDS YP_215230.1 62178813 complement(280986..281390) 1 NC_006905.1 outer membrane lipoprotein 281390 rcsF 321314000472 rcsF Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_215230.1 280986 R 321314 CDS YP_215231.1 62178814 complement(281509..282324) 1 NC_006905.1 DL-methionine transporter substrate-binding subunit 282324 metQ 321314000473 metQ Salmonella enterica subsp. enterica serovar Choleraesuis str. DL-methionine transporter substrate-binding subunit YP_215231.1 281509 R 321314 CDS YP_215232.1 62178815 complement(282363..283016) 1 NC_006905.1 part of the MetNIQ methionine uptake system; DL-methionine transporter permease 283016 yaeE 321314000474 yaeE Salmonella enterica subsp. enterica serovar Choleraesuis str. DL-methionine transporter permease YP_215232.1 282363 R 321314 CDS YP_215233.2 162139613 complement(283009..284040) 1 NC_006905.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 284040 metN 321314000475 metN Salmonella enterica subsp. enterica serovar Choleraesuis str. DL-methionine transporter ATP-binding subunit YP_215233.2 283009 R 321314 CDS YP_215234.1 62178817 284230..284811 1 NC_006905.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 284811 yaeD 321314000476 yaeD Salmonella enterica subsp. enterica serovar Choleraesuis str. D,D-heptose 1,7-bisphosphate phosphatase YP_215234.1 284230 D 321314 CDS YP_215238.1 62178821 290977..291780 1 NC_006905.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 291780 dkgB 321314000483 dkgB Salmonella enterica subsp. enterica serovar Choleraesuis str. 2,5-diketo-D-gluconate reductase B YP_215238.1 290977 D 321314 CDS YP_215239.1 62178822 complement(291802..292716) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 292716 yafC 321314000484 yafC Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_215239.1 291802 R 321314 CDS YP_215240.1 62178823 292821..293996 1 NC_006905.1 IPR007114: Major facilitator superfamily; drug efflux protein 293996 ydhP 321314000485 ydhP Salmonella enterica subsp. enterica serovar Choleraesuis str. drug efflux protein YP_215240.1 292821 D 321314 CDS YP_215241.1 62178824 294128..294928 1 NC_006905.1 hypothetical protein 294928 yafD 321314000486 yafD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215241.1 294128 D 321314 CDS YP_215242.1 62178825 295006..295776 1 NC_006905.1 IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase; methyltransferase in menaquinone/biotin biosynthesis 295776 yafE 321314000487 yafE Salmonella enterica subsp. enterica serovar Choleraesuis str. methyltransferase in menaquinone/biotin biosynthesis YP_215242.1 295006 D 321314 CDS YP_215243.1 62178826 complement(295832..297199) 1 NC_006905.1 catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D 297199 mltD 321314000488 mltD Salmonella enterica subsp. enterica serovar Choleraesuis str. membrane-bound lytic murein transglycosylase D YP_215243.1 295832 R 321314 CDS YP_215244.1 62178827 complement(297271..298026) 1 NC_006905.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase 298026 gloB 321314000489 gloB Salmonella enterica subsp. enterica serovar Choleraesuis str. hydroxyacylglutathione hydrolase YP_215244.1 297271 R 321314 CDS YP_215245.1 62178828 298061..298783 1 NC_006905.1 hypothetical protein 298783 yafS 321314000490 yafS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215245.1 298061 D 321314 CDS YP_215246.2 162139612 complement(298780..299247) 1 NC_006905.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 299247 rnhA 321314000491 rnhA Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease H YP_215246.2 298780 R 321314 CDS YP_215247.1 62178830 299302..300042 1 NC_006905.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 300042 dnaQ 321314000492 dnaQ Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase III subunit epsilon YP_215247.1 299302 D 321314 CDS YP_215248.1 62178831 complement(300574..301629) 1 NC_006905.1 hypothetical protein 301629 321314000494 SC0261 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215248.1 300574 R 321314 CDS YP_215249.1 62178832 complement(301640..302635) 1 NC_006905.1 hypothetical protein 302635 321314000495 SC0262 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215249.1 301640 R 321314 CDS YP_215250.1 62178833 complement(302632..304515) 1 NC_006905.1 hypothetical protein 304515 321314000496 SC0263 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215250.1 302632 R 321314 CDS YP_215251.1 62178834 complement(304531..305025) 1 NC_006905.1 hypothetical protein 305025 321314000497 SC0264 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215251.1 304531 R 321314 CDS YP_215252.1 62178835 complement(305022..305771) 1 NC_006905.1 hypothetical protein 305771 321314000498 SC0265 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215252.1 305022 R 321314 CDS YP_215253.1 62178836 complement(305833..306735) 1 NC_006905.1 hypothetical protein 306735 321314000499 SC0266 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215253.1 305833 R 321314 CDS YP_215255.1 62178838 309841..310383 1 NC_006905.1 hypothetical protein 310383 321314000501 SC0268 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215255.1 309841 D 321314 CDS YP_215256.1 62178839 310407..311915 1 NC_006905.1 hypothetical protein 311915 sirA 321314000502 sirA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215256.1 310407 D 321314 CDS YP_215257.1 62178840 311982..312368 1 NC_006905.1 hypothetical protein 312368 321314000503 SC0270 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215257.1 311982 D 321314 CDS YP_215258.1 62178841 312381..312827 1 NC_006905.1 hypothetical protein 312827 321314000504 SC0271 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215258.1 312381 D 321314 CDS YP_215259.1 62178842 313079..313564 1 NC_006905.1 hypothetical protein 313564 321314000505 SC0272 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215259.1 313079 D 321314 CDS YP_215260.1 62178843 313631..314167 1 NC_006905.1 outer membrane lipoprotein 314167 321314000506 SC0273 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_215260.1 313631 D 321314 CDS YP_215261.1 62178844 314171..315514 1 NC_006905.1 hypothetical protein 315514 321314000507 SC0274 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215261.1 314171 D 321314 CDS YP_215262.1 62178845 315511..316815 1 NC_006905.1 IPR006665: OmpA/MotB domain; hypothetical protein 316815 321314000508 SC0275 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215262.1 315511 D 321314 CDS YP_215263.1 62178846 316820..317593 1 NC_006905.1 inner membrane protein 317593 321314000509 SC0276 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215263.1 316820 D 321314 CDS YP_215264.1 62178847 317783..318226 1 NC_006905.1 shiga-like toxin A subunit 318226 321314000510 SC0277 Salmonella enterica subsp. enterica serovar Choleraesuis str. shiga-like toxin A subunit YP_215264.1 317783 D 321314 CDS YP_215265.1 62178848 318260..322129 1 NC_006905.1 inner membrane protein 322129 321314000511 SC0278 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215265.1 318260 D 321314 CDS YP_215266.1 62178849 322129..322917 1 NC_006905.1 hypothetical protein 322917 321314000512 SC0279 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215266.1 322129 D 321314 CDS YP_215267.1 62178850 322914..323330 1 NC_006905.1 hypothetical protein 323330 321314000513 SC0280 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215267.1 322914 D 321314 CDS YP_215268.1 62178851 323354..323875 1 NC_006905.1 hypothetical protein 323875 321314000514 SC0281 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215268.1 323354 D 321314 CDS YP_215269.1 62178852 324271..326505 1 NC_006905.1 Rhs-family protein 326505 321314000515 SC0282 Salmonella enterica subsp. enterica serovar Choleraesuis str. Rhs-family protein YP_215269.1 324271 D 321314 CDS YP_215270.1 62178853 326517..327023 1 NC_006905.1 hypothetical protein 327023 321314000516 SC0283 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215270.1 326517 D 321314 CDS YP_215271.1 62178854 327039..331820 1 NC_006905.1 IPR001826: RHS protein; Rhs-family protein 331820 rhs 321314000517 rhs Salmonella enterica subsp. enterica serovar Choleraesuis str. Rhs-family protein YP_215271.1 327039 D 321314 CDS YP_215272.1 62178855 331839..332147 1 NC_006905.1 hypothetical protein 332147 321314000518 SC0285 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215272.1 331839 D 321314 CDS YP_215273.1 62178856 complement(332206..332463) 1 NC_006905.1 hypothetical protein 332463 yjiW 321314000519 yjiW Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215273.1 332206 R 321314 CDS YP_215274.1 62178857 333900..334367 1 NC_006905.1 hypothetical protein 334367 321314000520 SC0287 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215274.1 333900 D 321314 CDS YP_215275.1 62178858 334610..334963 1 NC_006905.1 hypothetical protein 334963 321314000521 SC0288 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215275.1 334610 D 321314 CDS YP_215276.1 62178859 complement(335030..335344) 1 NC_006905.1 hypothetical protein 335344 321314000522 SC0289 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215276.1 335030 R 321314 CDS YP_215277.1 62178860 complement(335477..335617) 1 NC_006905.1 hypothetical protein 335617 321314000523 SC0290 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215277.1 335477 R 321314 CDS YP_215278.1 62178861 335820..336101 1 NC_006905.1 integrase core subunit 336101 321314000524 SC0291 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase core subunit YP_215278.1 335820 D 321314 CDS YP_215279.1 62178862 336851..337363 1 NC_006905.1 outer membrane protein 337363 safA 321314000525 safA Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_215279.1 336851 D 321314 CDS YP_215280.1 62178863 337447..338184 1 NC_006905.1 IPR001829: Bacterial pili assembly chaperone; fimbriae assembly chaperone 338184 safB 321314000526 safB Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbriae assembly chaperone YP_215280.1 337447 D 321314 CDS YP_215281.1 62178864 338208..340718 1 NC_006905.1 IPR000015: Fimbrial biogenesis outer membrane usher protein; fimbriae usher 340718 safC 321314000527 safC Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbriae usher YP_215281.1 338208 D 321314 CDS YP_215282.1 62178865 340740..341210 1 NC_006905.1 fimbriae subunit 341210 safD 321314000528 safD Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbriae subunit YP_215282.1 340740 D 321314 CDS YP_215283.1 62178866 341618..342439 1 NC_006905.1 xylanase/chitin deacetylase 342439 ybeJ 321314000529 ybeJ Salmonella enterica subsp. enterica serovar Choleraesuis str. xylanase/chitin deacetylase YP_215283.1 341618 D 321314 CDS YP_215284.1 62178867 343256..344203 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; transcriptional regulator 344203 sinR 321314000530 sinR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_215284.1 343256 D 321314 CDS YP_215285.1 62178868 complement(344236..344487) 1 NC_006905.1 hypothetical protein 344487 321314000531 SC0298 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215285.1 344236 R 321314 CDS YP_215286.1 62178869 complement(344862..345128) 1 NC_006905.1 hypothetical protein 345128 istB 321314000532 istB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215286.1 344862 R 321314 CDS YP_215287.1 62178870 346343..347053 1 NC_006905.1 fimbrial protein 347053 tcfA 321314000533 tcfA Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial protein YP_215287.1 346343 D 321314 CDS YP_215288.1 62178871 347104..347679 1 NC_006905.1 fimbrial subunit 347679 tcfB 321314000534 tcfB Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial subunit YP_215288.1 347104 D 321314 CDS YP_215291.1 62178874 351703..352176 1 NC_006905.1 IPR000485: Bacterial regulatory proteins, AsnC/Lrp; transcriptional regulator 352176 tinR 321314000537 tinR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_215291.1 351703 D 321314 CDS YP_215292.1 62178875 352316..352933 1 NC_006905.1 hypothetical protein 352933 TioA 321314000538 TioA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215292.1 352316 D 321314 CDS YP_215293.1 62178876 complement(353699..353851) 1 NC_006905.1 hypothetical protein 353851 321314000539 SC0306 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215293.1 353699 R 321314 CDS YP_215294.1 62178877 complement(353897..354616) 1 NC_006905.1 adhesin 354616 pagN 321314000540 pagN Salmonella enterica subsp. enterica serovar Choleraesuis str. adhesin YP_215294.1 353897 R 321314 CDS YP_215295.1 62178878 complement(354962..355369) 1 NC_006905.1 hypothetical protein 355369 virG 321314000541 virG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215295.1 354962 R 321314 CDS YP_215296.1 62178879 complement(355679..356446) 1 NC_006905.1 IPR003010: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; hypothetical protein 356446 yafV 321314000542 yafV Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215296.1 355679 R 321314 CDS YP_215297.1 62178880 complement(356555..358999) 1 NC_006905.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 358999 fadE 321314000543 fadE Salmonella enterica subsp. enterica serovar Choleraesuis str. acyl-CoA dehydrogenase YP_215297.1 356555 R 321314 CDS YP_215298.1 62178881 359239..359817 1 NC_006905.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 359817 gmhA 321314000544 gmhA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoheptose isomerase YP_215298.1 359239 D 321314 CDS YP_215299.1 62178882 360030..360797 1 NC_006905.1 hypothetical protein 360797 yafJ 321314000545 yafJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215299.1 360030 D 321314 CDS YP_215300.1 62178883 complement(360768..361391) 1 NC_006905.1 hypothetical protein 361391 yafK 321314000546 yafK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215300.1 360768 R 321314 CDS YP_215301.1 62178884 361755..362810 1 NC_006905.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 362810 dinP 321314000547 dinP Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase IV YP_215301.1 361755 D 321314 CDS YP_215302.2 162139611 363029..364168 1 NC_006905.1 mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein 364168 ykfJ 321314000548 ykfJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215302.2 363029 D 321314 CDS YP_215303.1 62178886 364165..364779 1 NC_006905.1 similar to release factor 1 and 2; peptide chain release factor-like protein 364779 prfH 321314000549 prfH Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide chain release factor-like protein YP_215303.1 364165 D 321314 CDS YP_215304.1 62178887 complement(364935..366392) 1 NC_006905.1 IPR001160: Peptidase M20C, X-His dipeptidase; aminoacyl-histidine dipeptidase 366392 pepD 321314000550 pepD Salmonella enterica subsp. enterica serovar Choleraesuis str. aminoacyl-histidine dipeptidase YP_215304.1 364935 R 321314 CDS YP_215305.1 62178888 366641..367099 1 NC_006905.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 367099 gpt 321314000551 gpt Salmonella enterica subsp. enterica serovar Choleraesuis str. xanthine-guanine phosphoribosyltransferase YP_215305.1 366641 D 321314 CDS YP_215306.1 62178889 367188..368432 1 NC_006905.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 368432 frsA 321314000552 frsA Salmonella enterica subsp. enterica serovar Choleraesuis str. fermentation/respiration switch protein YP_215306.1 367188 D 321314 CDS YP_215307.1 62178890 368490..368891 1 NC_006905.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 368891 crl 321314000553 crl Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator Crl YP_215307.1 368490 D 321314 CDS YP_215308.1 62178891 complement(368942..369994) 1 NC_006905.1 IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; outer membrane phosphoporin protein E 369994 phoE 321314000554 phoE Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane phosphoporin protein E YP_215308.1 368942 R 321314 CDS YP_215309.1 62178892 370276..371379 1 NC_006905.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 371379 proB 321314000555 proB Salmonella enterica subsp. enterica serovar Choleraesuis str. gamma-glutamyl kinase YP_215309.1 370276 D 321314 CDS YP_215310.1 62178893 371391..372641 1 NC_006905.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 372641 proA 321314000556 proA Salmonella enterica subsp. enterica serovar Choleraesuis str. gamma-glutamyl phosphate reductase YP_215310.1 371391 D 321314 CDS YP_215311.1 62178894 complement(372847..374010) 1 NC_006905.1 IPR002104: Phage integrase; hypothetical protein 374010 int 321314000558 int Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215311.1 372847 R 321314 CDS YP_215312.1 62178895 complement(374240..374875) 1 NC_006905.1 IPR000504: RNA-binding region RNP-1 (RNA recognition motif); EaC protein 374875 eac 321314000559 eac Salmonella enterica subsp. enterica serovar Choleraesuis str. EaC protein YP_215312.1 374240 R 321314 CDS YP_215313.1 62178896 complement(374946..376121) 1 NC_006905.1 Eaa protein 376121 eaa 321314000560 eaa Salmonella enterica subsp. enterica serovar Choleraesuis str. Eaa protein YP_215313.1 374946 R 321314 CDS YP_215314.1 62178897 complement(376118..376579) 1 NC_006905.1 hypothetical protein 376579 321314000561 SC0327 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215314.1 376118 R 321314 CDS YP_215315.1 62178898 complement(376576..377097) 1 NC_006905.1 hypothetical protein 377097 321314000562 SC0328 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215315.1 376576 R 321314 CDS YP_215316.1 62178899 complement(377094..377327) 1 NC_006905.1 hypothetical protein 377327 321314000563 SC0329 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215316.1 377094 R 321314 CDS YP_215317.1 62178900 complement(377324..377701) 1 NC_006905.1 Eae protein 377701 eae 321314000564 eae Salmonella enterica subsp. enterica serovar Choleraesuis str. Eae protein YP_215317.1 377324 R 321314 CDS YP_215318.1 62178901 complement(378809..379357) 1 NC_006905.1 endodeoxyribonuclease 379357 exoD 321314000565 exoD Salmonella enterica subsp. enterica serovar Choleraesuis str. endodeoxyribonuclease YP_215318.1 378809 R 321314 CDS YP_215319.1 62178902 complement(379366..379872) 1 NC_006905.1 IPR000424: Single-strand binding protein; ssDNA-binding protein controls activity of RecBCD nuclease 379872 ssb 321314000566 ssb Salmonella enterica subsp. enterica serovar Choleraesuis str. ssDNA-binding protein controls activity of RecBCD nuclease YP_215319.1 379366 R 321314 CDS YP_215320.1 62178903 complement(379873..380580) 1 NC_006905.1 similar to Orf-235 in Salmonella typhimurium bacteriophage ST64T; hypothetical protein 380580 321314000567 SC0333 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215320.1 379873 R 321314 CDS YP_215321.1 62178904 complement(380710..380898) 1 NC_006905.1 host septation inhibitor 380898 kil 321314000568 kil Salmonella enterica subsp. enterica serovar Choleraesuis str. host septation inhibitor YP_215321.1 380710 R 321314 CDS YP_215322.1 62178905 complement(380879..381052) 1 NC_006905.1 similar to C3 protein in Salmonella typhimurium bacteriophage ST64T; IPR000278: Lambdoid phages regulatory protein CIII; C3-like protein 381052 rpc 321314000569 rpc Salmonella enterica subsp. enterica serovar Choleraesuis str. C3-like protein YP_215322.1 380879 R 321314 CDS YP_215323.1 62178906 complement(381244..381444) 1 NC_006905.1 hypothetical protein 381444 321314000570 SC0336 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215323.1 381244 R 321314 CDS YP_215324.1 62178907 complement(381513..381770) 1 NC_006905.1 similar to 43L protein in Xanthomonas oryzae bacteriophage Xp10; hypothetical protein 381770 321314000571 SC0337 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215324.1 381513 R 321314 CDS YP_215325.1 62178908 complement(382199..382501) 1 NC_006905.1 antitermination protein 382501 regN 321314000572 regN Salmonella enterica subsp. enterica serovar Choleraesuis str. antitermination protein YP_215325.1 382199 R 321314 CDS YP_215326.1 62178909 383603..383818 1 NC_006905.1 regulatory protein Cro (antirepressor) 383818 cro 321314000573 cro Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein Cro (antirepressor) YP_215326.1 383603 D 321314 CDS YP_215327.1 62178910 384386..385234 1 NC_006905.1 replication protein O 385234 rpo 321314000574 rpo Salmonella enterica subsp. enterica serovar Choleraesuis str. replication protein O YP_215327.1 384386 D 321314 CDS YP_215328.1 62178911 385342..387222 1 NC_006905.1 hypothetical protein 387222 321314000575 SC0341 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215328.1 385342 D 321314 CDS YP_215329.1 62178912 388012..388884 1 NC_006905.1 similar to Nin protein in Bacteriophage lambda; phosphoadenosine phosphosulfate reductase family protein 388884 nin 321314000576 nin Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoadenosine phosphosulfate reductase family protein YP_215329.1 388012 D 321314 CDS YP_215330.1 62178913 complement(388943..389278) 1 NC_006905.1 hypothetical protein 389278 stx 321314000577 stx Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215330.1 388943 R 321314 CDS YP_215331.1 62178914 389632..390027 1 NC_006905.1 DLP12 prophage; Holliday junction resolvase; endodeoxyribonuclease RUS 390027 rusA 321314000578 rusA Salmonella enterica subsp. enterica serovar Choleraesuis str. endodeoxyribonuclease RUS YP_215331.1 389632 D 321314 CDS YP_215332.1 62178915 390208..390387 1 NC_006905.1 protein Niprotein NZ 390387 ninZ 321314000579 ninZ Salmonella enterica subsp. enterica serovar Choleraesuis str. protein Niprotein NZ YP_215332.1 390208 D 321314 CDS YP_215333.1 62178916 390384..390902 1 NC_006905.1 similar to gp23 in Salmonella typhimurium bacteriophage ST64T; gp23-like protein 390902 321314000580 SC0346 Salmonella enterica subsp. enterica serovar Choleraesuis str. gp23-like protein YP_215333.1 390384 D 321314 CDS YP_215334.1 62178917 391363..391686 1 NC_006905.1 similar to holin protein in Bacteriophage HK620; holin-like protein 391686 321314000583 SC0347 Salmonella enterica subsp. enterica serovar Choleraesuis str. holin-like protein YP_215334.1 391363 D 321314 CDS YP_215336.1 62178919 391670..392146 1 NC_006905.1 lysin 392146 lycV 321314000584 lycV Salmonella enterica subsp. enterica serovar Choleraesuis str. lysin YP_215336.1 391670 D 321314 CDS YP_215337.1 62178920 392143..392580 1 NC_006905.1 Rz lysis protein 392580 enpP 321314000585 enpP Salmonella enterica subsp. enterica serovar Choleraesuis str. Rz lysis protein YP_215337.1 392143 D 321314 CDS YP_215339.1 62178922 392786..393274 1 NC_006905.1 hypothetical protein 393274 321314000586 SC0352 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215339.1 392786 D 321314 CDS YP_215340.1 62178923 393765..394007 1 NC_006905.1 hypothetical protein 394007 321314000587 SC0353 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215340.1 393765 D 321314 CDS YP_215341.1 62178924 394509..396008 1 NC_006905.1 similar to gp2 in Salmonella typhimurium bacteriophage ST64T; gp2-like protein 396008 321314000588 SC0354 Salmonella enterica subsp. enterica serovar Choleraesuis str. gp2-like protein YP_215341.1 394509 D 321314 CDS YP_215342.1 62178925 396009..398174 1 NC_006905.1 packaging glycoprotein 398174 321314000589 SC0355 Salmonella enterica subsp. enterica serovar Choleraesuis str. packaging glycoprotein YP_215342.1 396009 D 321314 CDS YP_215343.1 62178926 398188..399099 1 NC_006905.1 scaffolding protein 399099 321314000590 SC0356 Salmonella enterica subsp. enterica serovar Choleraesuis str. scaffolding protein YP_215343.1 398188 D 321314 CDS YP_215344.1 62178927 399099..400394 1 NC_006905.1 coat protein 400394 321314000591 SC0357 Salmonella enterica subsp. enterica serovar Choleraesuis str. coat protein YP_215344.1 399099 D 321314 CDS YP_215345.1 62178928 400653..401153 1 NC_006905.1 DNA stabilization protein 401153 321314000592 SC0358 Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA stabilization protein YP_215345.1 400653 D 321314 CDS YP_215346.1 62178929 401154..402572 1 NC_006905.1 DNA stabilization protein 402572 321314000593 SC0359 Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA stabilization protein YP_215346.1 401154 D 321314 CDS YP_215347.1 62178930 402576..403214 1 NC_006905.1 packaged DNA stabilization protein gp26 403214 321314000594 SC0360 Salmonella enterica subsp. enterica serovar Choleraesuis str. packaged DNA stabilization protein gp26 YP_215347.1 402576 D 321314 CDS YP_215348.1 62178931 403214..403669 1 NC_006905.1 hypothetical protein 403669 321314000595 SC0361 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215348.1 403214 D 321314 CDS YP_215349.1 62178932 403672..404361 1 NC_006905.1 DNA transfer protein gp7 404361 321314000596 SC0362 Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA transfer protein gp7 YP_215349.1 403672 D 321314 CDS YP_215350.1 62178933 404404..405723 1 NC_006905.1 DNA transfer protein gp20 405723 321314000597 SC0363 Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA transfer protein gp20 YP_215350.1 404404 D 321314 CDS YP_215351.1 62178934 405723..407636 1 NC_006905.1 IPR001917: Aminotransferase, class-II; TPA: injection protein 407636 321314000598 SC0364 Salmonella enterica subsp. enterica serovar Choleraesuis str. TPA: injection protein YP_215351.1 405723 D 321314 CDS YP_215353.1 62178936 complement(407654..407983) 1 NC_006905.1 hypothetical protein 407983 321314000599 SC0366 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215353.1 407654 R 321314 CDS YP_215354.1 62178937 408223..409983 1 NC_006905.1 hypothetical protein 409983 321314000600 SC0367 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215354.1 408223 D 321314 CDS YP_215355.1 62178938 complement(410259..411713) 1 NC_006905.1 hypothetical protein 411713 321314000601 SC0368 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215355.1 410259 R 321314 CDS YP_215356.1 62178939 complement(411703..412629) 1 NC_006905.1 IPR001173: Glycosyl transferase, family 2; bactoprenol glucosyl transferase 412629 gtrB 321314000602 gtrB Salmonella enterica subsp. enterica serovar Choleraesuis str. bactoprenol glucosyl transferase YP_215356.1 411703 R 321314 CDS YP_215357.1 62178940 complement(412629..412997) 1 NC_006905.1 IPR007267: GtrA-like protein; bactoprenol-linked glucose translocase 412997 gtrA 321314000603 gtrA Salmonella enterica subsp. enterica serovar Choleraesuis str. bactoprenol-linked glucose translocase YP_215357.1 412629 R 321314 CDS YP_215358.1 62178941 complement(413672..414535) 1 NC_006905.1 IS3 transposase 414535 insF 321314000604 insF Salmonella enterica subsp. enterica serovar Choleraesuis str. IS3 transposase YP_215358.1 413672 R 321314 CDS YP_215359.1 62178942 415277..415600 1 NC_006905.1 hypothetical protein 415600 yoaC 321314000606 yoaC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215359.1 415277 D 321314 CDS YP_215360.1 62178943 415842..417179 1 NC_006905.1 IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; permease 417179 ynfM 321314000607 ynfM Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_215360.1 415842 D 321314 CDS YP_215361.1 62178944 417311..418732 1 NC_006905.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 418732 ledL 321314000608 ledL Salmonella enterica subsp. enterica serovar Choleraesuis str. isopropylmalate isomerase large subunit YP_215361.1 417311 D 321314 CDS YP_215362.1 62178945 418734..419360 1 NC_006905.1 3-isopropylmalate isomerase subunit 419360 ledS 321314000609 ledS Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-isopropylmalate isomerase subunit YP_215362.1 418734 D 321314 CDS YP_215363.1 62178946 419375..420253 1 NC_006905.1 fumarylacetoacetate (FAA) hydrolase 420253 faaH 321314000610 faaH Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarylacetoacetate (FAA) hydrolase YP_215363.1 419375 D 321314 CDS YP_215364.1 62178947 420253..421167 1 NC_006905.1 IPR000379: Esterase/lipase/thioesterase; IPR000639: Epoxide hydrolase; IPR003089: Alpha/beta hydrolase; hydrolase or acyltransferase 421167 deh 321314000611 deh Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase or acyltransferase YP_215364.1 420253 D 321314 CDS YP_215365.1 62178948 421201..422166 1 NC_006905.1 LysR family transcriptional regulator 422166 ygiP 321314000612 ygiP Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_215365.1 421201 D 321314 CDS YP_215366.1 62178949 423074..423472 1 NC_006905.1 outer membrane protein 423472 321314000613 SC0379 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_215366.1 423074 D 321314 CDS YP_215367.1 62178950 complement(424244..425569) 1 NC_006905.1 fimbriae usher protein 425569 stbD 321314000615 stbD Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbriae usher protein YP_215367.1 424244 R 321314 CDS YP_215368.1 62178951 complement(425574..428135) 1 NC_006905.1 IPR000015: Fimbrial biogenesis outer membrane usher protein; fimbriae usher protein 428135 stbC 321314000616 stbC Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbriae usher protein YP_215368.1 425574 R 321314 CDS YP_215369.1 62178952 complement(428119..428880) 1 NC_006905.1 IPR001829: Bacterial pili assembly chaperone; fimbriae chaperone 428880 stbB 321314000617 stbB Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbriae chaperone YP_215369.1 428119 R 321314 CDS YP_215370.1 62178953 complement(428942..429478) 1 NC_006905.1 fimbriae major subunit 429478 stbA 321314000618 stbA Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbriae major subunit YP_215370.1 428942 R 321314 CDS YP_215371.1 62178954 430112..430876 1 NC_006905.1 inner membrane protein 430876 321314000619 SC0384 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215371.1 430112 D 321314 CDS YP_215372.1 62178955 430849..431349 1 NC_006905.1 hypothetical protein 431349 321314000620 SC0385 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215372.1 430849 D 321314 CDS YP_215373.1 62178956 431649..433223 1 NC_006905.1 IPR000209: Peptidase S8, subtilase serine protease; IPR001633: EAL domain; diguanylate cyclase/phosphodiesterase domain-containing protein 433223 rtn 321314000621 rtn Salmonella enterica subsp. enterica serovar Choleraesuis str. diguanylate cyclase/phosphodiesterase domain-containing protein YP_215373.1 431649 D 321314 CDS YP_215374.1 62178957 433323..434066 1 NC_006905.1 response regulator 434066 321314000622 SC0387 Salmonella enterica subsp. enterica serovar Choleraesuis str. response regulator YP_215374.1 433323 D 321314 CDS YP_215375.1 62178958 434039..434527 1 NC_006905.1 inner membrane protein 434527 321314000623 SC0388 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215375.1 434039 D 321314 CDS YP_215376.1 62178959 434928..435452 1 NC_006905.1 IPR000758: Virulence-related outer membrane protein; hypothetical protein 435452 ail 321314000624 ail Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215376.1 434928 D 321314 CDS YP_215377.1 62178960 435596..436237 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; response regulator 436237 321314000625 SC0390 Salmonella enterica subsp. enterica serovar Choleraesuis str. response regulator YP_215377.1 435596 D 321314 CDS YP_215378.1 62178961 436248..436472 1 NC_006905.1 inner membrane protein 436472 321314000626 SC0391 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215378.1 436248 D 321314 CDS YP_215379.1 62178962 436530..436889 1 NC_006905.1 outer membrane lipoprotein 436889 yjeI 321314000627 yjeI Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_215379.1 436530 D 321314 CDS YP_215380.1 62178963 complement(436959..438416) 1 NC_006905.1 outer membrane efflux protein-like protein 438416 oprM 321314000628 oprM Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane efflux protein-like protein YP_215380.1 436959 R 321314 CDS YP_215381.1 62178964 complement(441597..442823) 1 NC_006905.1 IPR006143: Secretion protein HlyD; cation efflux pump 442823 mtrC 321314000630 mtrC Salmonella enterica subsp. enterica serovar Choleraesuis str. cation efflux pump YP_215381.1 441597 R 321314 CDS YP_215382.1 62178965 445402..445866 1 NC_006905.1 IPR000551: Bacterial regulatory protein, MerR family; transcriptional regulator 445866 hmrR 321314000632 hmrR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_215382.1 445402 D 321314 CDS YP_215383.1 62178966 445944..446138 1 NC_006905.1 IPR006191: Heavy metal binding; copper chaperone 446138 hmb 321314000633 hmb Salmonella enterica subsp. enterica serovar Choleraesuis str. copper chaperone YP_215383.1 445944 D 321314 CDS YP_215384.1 62178967 446430..447683 1 NC_006905.1 IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; inner membrane protein 447683 jen 321314000635 jen Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215384.1 446430 D 321314 CDS YP_215385.1 62178968 447872..449830 1 NC_006905.1 IPR001091: Site-specific DNA-methyltransferase (cytosine-N4-specific); IPR001917: Aminotransferase, class-II; IPR002052: N-6 Adenine-specific DNA methylase;IPR002295: N6 adenine-specific DNA methyltransferase, D21 class; DNA methylase; restriction system 449830 mod 321314000636 mod Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA methylase; restriction system YP_215385.1 447872 D 321314 CDS YP_215386.1 62178969 449840..452812 1 NC_006905.1 IPR006935: Type III restriction enzyme, res subunit; DNA restriction (DNA helicase 452812 res 321314000637 res Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA restriction (DNA helicase YP_215386.1 449840 D 321314 CDS YP_215387.1 62178970 453090..453191 1 NC_006905.1 hypothetical protein 453191 321314000638 SC0400 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215387.1 453090 D 321314 CDS YP_215388.1 62178971 453308..454711 1 NC_006905.1 cytochrome BD2 subunit I 454711 cydA 321314000639 cydA Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome BD2 subunit I YP_215388.1 453308 D 321314 CDS YP_215389.1 62178972 454708..455718 1 NC_006905.1 cytochrome BD2 subunit II 455718 cydB 321314000640 cydB Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome BD2 subunit II YP_215389.1 454708 D 321314 CDS YP_215390.1 62178973 455735..455959 1 NC_006905.1 inner membrane protein 455959 321314000641 SC0403 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215390.1 455735 D 321314 CDS YP_215391.1 62178974 456055..457059 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 457059 321314000642 SC0404 Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_215391.1 456055 D 321314 CDS YP_215392.1 62178975 457205..459313 1 NC_006905.1 IPR000531: TonB-dependent receptor protein; ferrioxamine receptor 459313 foxA 321314000643 foxA Salmonella enterica subsp. enterica serovar Choleraesuis str. ferrioxamine receptor YP_215392.1 457205 D 321314 CDS YP_215393.1 62178976 complement(459354..459986) 1 NC_006905.1 IPR001123: Lysine exporter protein (LYSE/YGGA); transporter 459986 yahN 321314000644 yahN Salmonella enterica subsp. enterica serovar Choleraesuis str. transporter YP_215393.1 459354 R 321314 CDS YP_215394.1 62178977 460218..460493 1 NC_006905.1 hypothetical protein 460493 yahO 321314000645 yahO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215394.1 460218 D 321314 CDS YP_215395.1 62178978 complement(460629..462254) 1 NC_006905.1 IPR001254: Peptidase S1, chymotrypsin family; IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; prp operon regulator 462254 prpR 321314000646 prpR Salmonella enterica subsp. enterica serovar Choleraesuis str. prp operon regulator YP_215395.1 460629 R 321314 CDS YP_215396.1 62178979 462520..463407 1 NC_006905.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 463407 prpB 321314000647 prpB Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-methylisocitrate lyase YP_215396.1 462520 D 321314 CDS YP_215397.1 62178980 463530..464699 1 NC_006905.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 464699 prpC 321314000648 prpC Salmonella enterica subsp. enterica serovar Choleraesuis str. methylcitrate synthase YP_215397.1 463530 D 321314 CDS YP_215398.1 62178981 464737..466188 1 NC_006905.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 466188 prpD 321314000649 prpD Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-methylcitrate dehydratase YP_215398.1 464737 D 321314 CDS YP_215399.1 62178982 466229..468115 1 NC_006905.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 468115 prpE 321314000650 prpE Salmonella enterica subsp. enterica serovar Choleraesuis str. propionyl-CoA synthetase YP_215399.1 466229 D 321314 CDS YP_215400.1 62178983 complement(468222..469196) 1 NC_006905.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 469196 hemB 321314000651 hemB Salmonella enterica subsp. enterica serovar Choleraesuis str. delta-aminolevulinic acid dehydratase YP_215400.1 468222 R 321314 CDS YP_215401.1 62178984 469709..472594 1 NC_006905.1 similar to 3rd module of ATP-binding components of transporters; IPR003991: Pertactin virulence factor, C-terminal; flagellar protein 472594 yaiU 321314000652 yaiU Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar protein YP_215401.1 469709 D 321314 CDS YP_215402.1 62178985 472680..473303 1 NC_006905.1 DNA-binding transcriptional regulator 473303 yaiV 321314000653 yaiV Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator YP_215402.1 472680 D 321314 CDS YP_215403.1 62178986 complement(473348..474505) 1 NC_006905.1 this protein has no known enzymatic function; beta-lactam binding protein AmpH 474505 ampH 321314000654 ampH Salmonella enterica subsp. enterica serovar Choleraesuis str. beta-lactam binding protein AmpH YP_215403.1 473348 R 321314 CDS YP_215404.1 62178987 474852..476072 1 NC_006905.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 476072 sbmA 321314000655 sbmA Salmonella enterica subsp. enterica serovar Choleraesuis str. transporter YP_215404.1 474852 D 321314 CDS YP_215405.1 62178988 476087..477181 1 NC_006905.1 outer membrane lipoprotein 477181 yaiW 321314000656 yaiW Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_215405.1 476087 D 321314 CDS YP_215406.1 62178989 complement(477219..477527) 1 NC_006905.1 hypothetical protein 477527 yaiY 321314000657 yaiY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215406.1 477219 R 321314 CDS YP_215407.1 62178990 477795..478010 1 NC_006905.1 hypothetical protein 478010 yaiZ 321314000658 yaiZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215407.1 477795 D 321314 CDS YP_215408.1 62178991 complement(478036..479130) 1 NC_006905.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 479130 ddl 321314000659 ddl Salmonella enterica subsp. enterica serovar Choleraesuis str. D-alanyl-alanine synthetase A YP_215408.1 478036 R 321314 CDS YP_215409.1 62178992 479208..479921 1 NC_006905.1 hypothetical protein 479921 321314000660 SC0422 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215409.1 479208 D 321314 CDS YP_215410.1 62178993 480325..481305 1 NC_006905.1 IPR001958: Tetracycline resistance protein; IPR007114: Major facilitator superfamily; permease 481305 yceE 321314000661 yceE Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_215410.1 480325 D 321314 CDS YP_215411.1 62178994 481602..481862 1 NC_006905.1 hypothetical protein 481862 yaiB 321314000662 yaiB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215411.1 481602 D 321314 CDS YP_215412.1 62178995 482211..482531 1 NC_006905.1 hypothetical protein 482531 psiF 321314000663 psiF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215412.1 482211 D 321314 CDS YP_215413.1 62178996 482623..483735 1 NC_006905.1 catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; diguanylate cyclase AdrA 483735 adrA 321314000664 adrA Salmonella enterica subsp. enterica serovar Choleraesuis str. diguanylate cyclase AdrA YP_215413.1 482623 D 321314 CDS YP_215414.1 62178997 complement(483750..484559) 1 NC_006905.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 484559 proC 321314000665 proC Salmonella enterica subsp. enterica serovar Choleraesuis str. pyrroline-5-carboxylate reductase YP_215414.1 483750 R 321314 CDS YP_215415.1 62178998 484699..485154 1 NC_006905.1 IPR003791: Protein of unknown function DUF188; hypothetical protein 485154 yaiI 321314000666 yaiI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215415.1 484699 D 321314 CDS YP_215416.1 62178999 485339..485884 1 NC_006905.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 485884 aroL 321314000667 aroL Salmonella enterica subsp. enterica serovar Choleraesuis str. shikimate kinase YP_215416.1 485339 D 321314 CDS YP_215417.1 62179000 485911..486102 1 NC_006905.1 hypothetical protein 486102 yaiA 321314000668 yaiA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215417.1 485911 D 321314 CDS YP_215418.1 62179001 486353..487030 1 NC_006905.1 hypothetical protein 487030 aroM 321314000669 aroM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215418.1 486353 D 321314 CDS YP_215419.1 62179002 487101..487385 1 NC_006905.1 hypothetical protein 487385 yaiE 321314000670 yaiE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215419.1 487101 D 321314 CDS YP_215420.2 162139610 complement(487423..488334) 1 NC_006905.1 Required for efficient pilin antigenic variation; recombination associated protein 488334 rdgC 321314000671 rdgC Salmonella enterica subsp. enterica serovar Choleraesuis str. recombination associated protein YP_215420.2 487423 R 321314 CDS YP_215421.1 62179004 488460..489368 1 NC_006905.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 489368 yajF 321314000672 yajF Salmonella enterica subsp. enterica serovar Choleraesuis str. fructokinase YP_215421.1 488460 D 321314 CDS YP_215422.1 62179005 complement(489388..490560) 1 NC_006905.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ 490560 araJ 321314000673 araJ Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS transport protein AraJ YP_215422.1 489388 R 321314 CDS YP_215423.1 62179006 complement(490733..493873) 1 NC_006905.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease SbcC 493873 sbcC 321314000674 sbcC Salmonella enterica subsp. enterica serovar Choleraesuis str. exonuclease SbcC YP_215423.1 490733 R 321314 CDS YP_215424.1 62179007 complement(493870..495072) 1 NC_006905.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease SbcD 495072 sbcD 321314000675 sbcD Salmonella enterica subsp. enterica serovar Choleraesuis str. exonuclease SbcD YP_215424.1 493870 R 321314 CDS YP_215425.1 62179008 495287..495976 1 NC_006905.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 495976 phoB 321314000676 phoB Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator PhoB YP_215425.1 495287 D 321314 CDS YP_215426.1 62179009 496046..497341 1 NC_006905.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 497341 phoR 321314000677 phoR Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphate regulon sensor protein YP_215426.1 496046 D 321314 CDS YP_215427.1 62179010 complement(497554..497703) 1 NC_006905.1 hypothetical protein 497703 321314000678 SC0440 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215427.1 497554 R 321314 CDS YP_215428.1 62179011 497750..499069 1 NC_006905.1 LIVCS family branched chain amino acid transporter system II (LIV-II) 499069 brnQ 321314000679 brnQ Salmonella enterica subsp. enterica serovar Choleraesuis str. LIVCS family branched chain amino acid transporter system II (LIV-II) YP_215428.1 497750 D 321314 CDS YP_215429.2 229037914 499141..500514 1 NC_006905.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; proline-specific permease 500514 proY 321314000680 proY Salmonella enterica subsp. enterica serovar Choleraesuis str. proline-specific permease YP_215429.2 499141 D 321314 CDS YP_215430.1 62179013 500676..502493 1 NC_006905.1 maltodextrin glucosidase 502493 malZ 321314000681 malZ Salmonella enterica subsp. enterica serovar Choleraesuis str. maltodextrin glucosidase YP_215430.1 500676 D 321314 CDS YP_215431.1 62179014 complement(502565..503167) 1 NC_006905.1 thiol - alkyl hydroperoxide reductase 503167 tsaA 321314000682 tsaA Salmonella enterica subsp. enterica serovar Choleraesuis str. thiol - alkyl hydroperoxide reductase YP_215431.1 502565 R 321314 CDS YP_215432.1 62179015 complement(503377..503958) 1 NC_006905.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; ACP phosphodieterase 503958 yajB 321314000683 yajB Salmonella enterica subsp. enterica serovar Choleraesuis str. ACP phosphodieterase YP_215432.1 503377 R 321314 CDS YP_215433.1 62179016 504052..505116 1 NC_006905.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 505116 queA 321314000684 queA Salmonella enterica subsp. enterica serovar Choleraesuis str. S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_215433.1 504052 D 321314 CDS YP_215434.1 62179017 505313..506440 1 NC_006905.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 506440 tgt 321314000685 tgt Salmonella enterica subsp. enterica serovar Choleraesuis str. queuine tRNA-ribosyltransferase YP_215434.1 505313 D 321314 CDS YP_215435.1 62179018 506463..506795 1 NC_006905.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 506795 yajC 321314000686 yajC Salmonella enterica subsp. enterica serovar Choleraesuis str. preprotein translocase subunit YajC YP_215435.1 506463 D 321314 CDS YP_215436.1 62179019 506823..508670 1 NC_006905.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 508670 secD 321314000687 secD Salmonella enterica subsp. enterica serovar Choleraesuis str. preprotein translocase subunit SecD YP_215436.1 506823 D 321314 CDS YP_215437.1 62179020 508681..509652 1 NC_006905.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 509652 secF 321314000688 secF Salmonella enterica subsp. enterica serovar Choleraesuis str. preprotein translocase subunit SecF YP_215437.1 508681 D 321314 CDS YP_215438.1 62179021 509797..510162 1 NC_006905.1 hypothetical protein 510162 321314000689 SC0451 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215438.1 509797 D 321314 CDS YP_215439.1 62179022 510188..510880 1 NC_006905.1 regulatory protein 510880 321314000690 SC0452 Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein YP_215439.1 510188 D 321314 CDS YP_215440.1 62179023 511050..511397 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; hypothetical protein 511397 yajD 321314000691 yajD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215440.1 511050 D 321314 CDS YP_215441.1 62179024 complement(511948..512916) 1 NC_006905.1 IPR003055: Nucleoside-specific channel-forming protein, Tsx; nucleoside channel phage T6/colicin K receptor 512916 tsx 321314000692 tsx Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleoside channel phage T6/colicin K receptor YP_215441.1 511948 R 321314 CDS YP_215442.1 62179025 complement(513111..513650) 1 NC_006905.1 hypothetical protein 513650 yajI 321314000693 yajI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215442.1 513111 R 321314 CDS YP_215443.1 62179026 513802..514251 1 NC_006905.1 transcriptional regulator NrdR 514251 nrdR 321314000694 nrdR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator NrdR YP_215443.1 513802 D 321314 CDS YP_215444.1 62179027 514255..515358 1 NC_006905.1 riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 515358 ribD 321314000695 ribD Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_215444.1 514255 D 321314 CDS YP_215445.1 62179028 515447..515917 1 NC_006905.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 515917 ribH 321314000696 ribH Salmonella enterica subsp. enterica serovar Choleraesuis str. 6,7-dimethyl-8-ribityllumazine synthase YP_215445.1 515447 D 321314 CDS YP_215446.1 62179029 515938..516357 1 NC_006905.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 516357 nusB 321314000697 nusB Salmonella enterica subsp. enterica serovar Choleraesuis str. transcription antitermination protein NusB YP_215446.1 515938 D 321314 CDS YP_215447.1 62179030 516436..517416 1 NC_006905.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 517416 thiL 321314000698 thiL Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine monophosphate kinase YP_215447.1 516436 D 321314 CDS YP_215448.1 62179031 517394..517909 1 NC_006905.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 517909 pgpA 321314000699 pgpA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphatidylglycerophosphatase A YP_215448.1 517394 D 321314 CDS YP_215449.1 62179032 complement(518013..518987) 1 NC_006905.1 IPR001395: Aldo/keto reductase; oxidoreductase / K + channel protein 518987 yajO 321314000700 yajO Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase / K + channel protein YP_215449.1 518013 R 321314 CDS YP_215450.1 62179033 complement(519044..520906) 1 NC_006905.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 520906 dxs 321314000701 dxs Salmonella enterica subsp. enterica serovar Choleraesuis str. 1-deoxy-D-xylulose-5-phosphate synthase YP_215450.1 519044 R 321314 CDS YP_215451.1 62179034 complement(520930..521829) 1 NC_006905.1 IPR000092: Polyprenyl synthetase; geranyltranstransferase 521829 ispA 321314000702 ispA Salmonella enterica subsp. enterica serovar Choleraesuis str. geranyltranstransferase YP_215451.1 520930 R 321314 CDS YP_215452.1 62179035 complement(521830..522072) 1 NC_006905.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 522072 xseB 321314000703 xseB Salmonella enterica subsp. enterica serovar Choleraesuis str. exodeoxyribonuclease VII small subunit YP_215452.1 521830 R 321314 CDS YP_215453.1 62179036 522282..523730 1 NC_006905.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 523730 xseB 321314000704 xseB Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine biosynthesis protein ThiI YP_215453.1 522282 D 321314 CDS YP_215454.1 62179037 complement(523774..524571) 1 NC_006905.1 2-aminoethylphosphonate ABC transporter permease 524571 phnV 321314000705 phnV Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-aminoethylphosphonate ABC transporter permease YP_215454.1 523774 R 321314 CDS YP_215455.1 62179038 complement(524574..525434) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; 2-aminoethylphosphonate ABC transporter permease 525434 phnU 321314000706 phnU Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-aminoethylphosphonate ABC transporter permease YP_215455.1 524574 R 321314 CDS YP_215456.1 62179039 complement(525437..526546) 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; 2-aminoethylphosphonate ABC transporter ATPase 526546 phnT 321314000707 phnT Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-aminoethylphosphonate ABC transporter ATPase YP_215456.1 525437 R 321314 CDS YP_215457.1 62179040 complement(526552..527565) 1 NC_006905.1 2-aminoethylphosphonate ABC transporter substrate-binding protein 527565 phnS 321314000708 phnS Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-aminoethylphosphonate ABC transporter substrate-binding protein YP_215457.1 526552 R 321314 CDS YP_215458.1 62179041 complement(527763..528482) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; 2-aminoethylphosphonate transport, repressor 528482 phnR 321314000709 phnR Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-aminoethylphosphonate transport, repressor YP_215458.1 527763 R 321314 CDS YP_215459.1 62179042 528622..529725 1 NC_006905.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 529725 phnW 321314000710 phnW Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-aminoethylphosphonate--pyruvate transaminase YP_215459.1 528622 D 321314 CDS YP_215460.1 62179043 529732..530544 1 NC_006905.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 530544 phnX 321314000711 phnX Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphonoacetaldehyde hydrolase YP_215460.1 529732 D 321314 CDS YP_215461.1 62179044 complement(530641..531231) 1 NC_006905.1 DJ-1 family protein 531231 thiJ 321314000712 thiJ Salmonella enterica subsp. enterica serovar Choleraesuis str. DJ-1 family protein YP_215461.1 530641 R 321314 CDS YP_215462.1 62179045 complement(531194..532105) 1 NC_006905.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 532105 apbA 321314000713 apbA Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-dehydropantoate 2-reductase YP_215462.1 531194 R 321314 CDS YP_215463.1 62179046 532231..532722 1 NC_006905.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 532722 yajQ 321314000714 yajQ Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleotide-binding protein YP_215463.1 532231 D 321314 CDS YP_215464.1 62179047 complement(532769..534061) 1 NC_006905.1 IPR007114: Major facilitator superfamily; MFS family transporter 534061 yajR 321314000715 yajR Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter YP_215464.1 532769 R 321314 CDS YP_215465.1 62179048 complement(534361..534522) 1 NC_006905.1 IS903 transposase 534522 tnp 321314000716 tnp Salmonella enterica subsp. enterica serovar Choleraesuis str. IS903 transposase YP_215465.1 534361 R 321314 CDS YP_215466.1 62179049 534670..536181 1 NC_006905.1 hypothetical protein 536181 321314000717 SC0479 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215466.1 534670 D 321314 CDS YP_215467.1 62179050 536193..537662 1 NC_006905.1 hypothetical protein 537662 ybeQ 321314000718 ybeQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215467.1 536193 D 321314 CDS YP_215468.1 62179051 complement(537710..538645) 1 NC_006905.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 538645 cyoE 321314000719 cyoE Salmonella enterica subsp. enterica serovar Choleraesuis str. protoheme IX farnesyltransferase YP_215468.1 537710 R 321314 CDS YP_215469.1 62179052 complement(538612..538941) 1 NC_006905.1 cytochrome o ubiquinol oxidase subunit IV 538941 cyoD 321314000720 cyoD Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome o ubiquinol oxidase subunit IV YP_215469.1 538612 R 321314 CDS YP_215470.1 62179053 complement(538941..539555) 1 NC_006905.1 IPR000298: Cytochrome c oxidase, subunit III; cytochrome o ubiquinol oxidase subunit III 539555 cyoC 321314000721 cyoC Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome o ubiquinol oxidase subunit III YP_215470.1 538941 R 321314 CDS YP_215471.1 62179054 complement(539545..541536) 1 NC_006905.1 IPR000883: Cytochrome c oxidase, subunit I; cytochrome o ubiquinol oxidase subunit I 541536 cyoB 321314000722 cyoB Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome o ubiquinol oxidase subunit I YP_215471.1 539545 R 321314 CDS YP_215472.1 62179055 complement(541547..542503) 1 NC_006905.1 cytochrome o ubiquinol oxidase subunit II 542503 cyoA 321314000723 cyoA Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome o ubiquinol oxidase subunit II YP_215472.1 541547 R 321314 CDS YP_215473.1 62179056 complement(542956..544437) 1 NC_006905.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter 544437 ampG 321314000724 ampG Salmonella enterica subsp. enterica serovar Choleraesuis str. muropeptide transporter YP_215473.1 542956 R 321314 CDS YP_215474.2 162139609 complement(544475..545053) 1 NC_006905.1 IPR005619: Uncharacterized lipoprotein; hypothetical protein 545053 yajG 321314000725 yajG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215474.2 544475 R 321314 CDS YP_215475.1 62179058 545367..545675 1 NC_006905.1 positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 545675 bolA 321314000726 bolA Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator BolA YP_215475.1 545367 D 321314 CDS YP_215476.1 62179059 546022..547320 1 NC_006905.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 547320 tig 321314000727 tig Salmonella enterica subsp. enterica serovar Choleraesuis str. trigger factor YP_215476.1 546022 D 321314 CDS YP_215477.2 162139608 547568..548191 1 NC_006905.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 548191 clpP 321314000728 clpP Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent Clp protease proteolytic subunit YP_215477.2 547568 D 321314 CDS YP_215478.1 62179061 548443..549714 1 NC_006905.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 549714 clpX 321314000729 clpX Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent protease ATP-binding subunit ClpX YP_215478.1 548443 D 321314 CDS YP_215479.1 62179062 549900..552254 1 NC_006905.1 IPR001412: Aminoacyl-tRNA synthetase, class I; IPR001984: Peptidase family S16; IPR008268: Peptidase S16, active site; DNA-binding ATP-dependent protease La 552254 lon 321314000730 lon Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding ATP-dependent protease La YP_215479.1 549900 D 321314 CDS YP_215480.1 62179063 552463..552735 1 NC_006905.1 histone-like DNA-binding protein; transcriptional regulator HU subunit beta 552735 hupB 321314000731 hupB Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator HU subunit beta YP_215480.1 552463 D 321314 CDS YP_215481.1 62179064 553026..554897 1 NC_006905.1 IPR000297: PpiC-type peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl cis-trans isomerase 554897 cypD 321314000732 cypD Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidyl-prolyl cis-trans isomerase YP_215481.1 553026 D 321314 CDS YP_215482.1 62179065 555047..555421 1 NC_006905.1 IPR000445: Helix-hairpin-helix motif; hypothetical protein 555421 ybaV 321314000733 ybaV Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215482.1 555047 D 321314 CDS YP_215483.1 62179066 555525..555923 1 NC_006905.1 hypothetical protein 555923 ybaW 321314000734 ybaW Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215483.1 555525 D 321314 CDS YP_215484.1 62179067 complement(556029..556829) 1 NC_006905.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 556829 ybaX 321314000735 ybaX Salmonella enterica subsp. enterica serovar Choleraesuis str. queuosine biosynthesis protein QueC YP_215484.1 556029 R 321314 CDS YP_215485.1 62179068 complement(556789..558504) 1 NC_006905.1 ABC transporter substrate-binding protein 558504 ybaE 321314000736 ybaE Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter substrate-binding protein YP_215485.1 556789 R 321314 CDS YP_215486.1 62179069 558590..559408 1 NC_006905.1 IPR000150: Cof protein; hypothetical protein 559408 cof 321314000737 cof Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215486.1 558590 D 321314 CDS YP_215487.1 62179070 complement(559458..560513) 1 NC_006905.1 IPR001926: Pyridoxal-5'-phosphate-dependent enzyme, beta family; cysteine synthase/cystathionine beta-synthase 560513 321314000738 SC0500 Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine synthase/cystathionine beta-synthase YP_215487.1 559458 R 321314 CDS YP_215488.1 62179071 560625..561083 1 NC_006905.1 IPR000485: Bacterial regulatory proteins, AsnC/Lrp; transcriptional regulator (AsnC family) 561083 ybaO 321314000739 ybaO Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator (AsnC family) YP_215488.1 560625 D 321314 CDS YP_215489.1 62179072 561124..562896 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; multidrug transporter membrane\ATP-binding components 562896 mdlA 321314000740 mdlA Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug transporter membrane\ATP-binding components YP_215489.1 561124 D 321314 CDS YP_215490.1 62179073 562889..564670 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; multidrug transporter membrane\ATP-binding components 564670 mdlB 321314000741 mdlB Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug transporter membrane\ATP-binding components YP_215490.1 562889 D 321314 CDS YP_215491.1 62179074 564674..564832 1 NC_006905.1 hypothetical protein 564832 321314000742 SC0504 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215491.1 564674 D 321314 CDS YP_215492.1 62179075 564883..565221 1 NC_006905.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 565221 glnK 321314000743 glnK Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrogen regulatory protein P-II 2 YP_215492.1 564883 D 321314 CDS YP_215493.1 62179076 565253..566548 1 NC_006905.1 IPR001905: Ammonium transporter; IPR002229: Blood group Rhesus C/E and D polypeptide; ammonium transporter 566548 amtB 321314000744 amtB Salmonella enterica subsp. enterica serovar Choleraesuis str. ammonium transporter YP_215493.1 565253 D 321314 CDS YP_215494.1 62179077 complement(566648..567508) 1 NC_006905.1 acyl-CoA thioesterase 567508 tesB 321314000745 tesB Salmonella enterica subsp. enterica serovar Choleraesuis str. acyl-CoA thioesterase YP_215494.1 566648 R 321314 CDS YP_215495.1 62179078 567723..568292 1 NC_006905.1 glycoprotein/polysaccharide metabolism 568292 ybaY 321314000746 ybaY Salmonella enterica subsp. enterica serovar Choleraesuis str. glycoprotein/polysaccharide metabolism YP_215495.1 567723 D 321314 CDS YP_215496.1 62179079 complement(568325..568714) 1 NC_006905.1 methyltransferase 568714 ybaZ 321314000747 ybaZ Salmonella enterica subsp. enterica serovar Choleraesuis str. methyltransferase YP_215496.1 568325 R 321314 CDS YP_215497.1 62179080 complement(568945..570495) 1 NC_006905.1 IPR001633: EAL domain; diguanylate cyclase/phosphodiesterase domain-containing protein 570495 ylaB 321314000748 ylaB Salmonella enterica subsp. enterica serovar Choleraesuis str. diguanylate cyclase/phosphodiesterase domain-containing protein YP_215497.1 568945 R 321314 CDS YP_215498.1 62179081 570720..570980 1 NC_006905.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 570980 rpmE2 321314000749 rpmE2 Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L31 YP_215498.1 570720 D 321314 CDS YP_215499.1 62179082 570986..571126 1 NC_006905.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 571126 rpmJ 321314000750 rpmJ Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L36 YP_215499.1 570986 D 321314 CDS YP_215500.1 62179083 complement(571182..571652) 1 NC_006905.1 hypothetical protein 571652 ylaC 321314000751 ylaC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215500.1 571182 R 321314 CDS YP_215501.1 62179084 complement(571770..572321) 1 NC_006905.1 IPR001451: Bacterial transferase hexapeptide repeat; maltose O-acetyltransferase 572321 maa 321314000752 maa Salmonella enterica subsp. enterica serovar Choleraesuis str. maltose O-acetyltransferase YP_215501.1 571770 R 321314 CDS YP_215502.1 62179085 complement(572500..572718) 1 NC_006905.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 572718 hha 321314000753 hha Salmonella enterica subsp. enterica serovar Choleraesuis str. hemolysin expression-modulating protein YP_215502.1 572500 R 321314 CDS YP_215503.1 62179086 complement(572746..573120) 1 NC_006905.1 hypothetical protein 573120 ybaJ 321314000754 ybaJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215503.1 572746 R 321314 CDS YP_215504.1 62179087 complement(573616..576765) 1 NC_006905.1 IPR001036: Acriflavin resistance protein; acridine efflux system protein 576765 acrB 321314000755 acrB Salmonella enterica subsp. enterica serovar Choleraesuis str. acridine efflux system protein YP_215504.1 573616 R 321314 CDS YP_215505.1 62179088 complement(576788..577873) 1 NC_006905.1 acridine efflux pump 577873 acrA 321314000756 acrA Salmonella enterica subsp. enterica serovar Choleraesuis str. acridine efflux pump YP_215505.1 576788 R 321314 CDS YP_215506.2 162139607 578895..582257 1 NC_006905.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 582257 aefA 321314000758 aefA Salmonella enterica subsp. enterica serovar Choleraesuis str. potassium efflux protein KefA YP_215506.2 578895 D 321314 CDS YP_215507.1 62179090 complement(582299..583222) 1 NC_006905.1 transposase 583222 321314000759 SC0520 Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_215507.1 582299 R 321314 CDS YP_215508.1 62179091 complement(583292..583459) 1 NC_006905.1 hypothetical protein 583459 ybaM 321314000760 ybaM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215508.1 583292 R 321314 CDS YP_215509.1 62179092 complement(583473..584000) 1 NC_006905.1 PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; primosomal replication protein N'' 584000 priC 321314000761 priC Salmonella enterica subsp. enterica serovar Choleraesuis str. primosomal replication protein N'' YP_215509.1 583473 R 321314 CDS YP_215510.1 62179093 584051..584446 1 NC_006905.1 hypothetical protein 584446 ybaN 321314000762 ybaN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215510.1 584051 D 321314 CDS YP_215511.1 62179094 584599..585150 1 NC_006905.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 585150 apt 321314000763 apt Salmonella enterica subsp. enterica serovar Choleraesuis str. adenine phosphoribosyltransferase YP_215511.1 584599 D 321314 CDS YP_215512.1 62179095 585264..587192 1 NC_006905.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 587192 dnaX 321314000764 dnaX Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase III subunits gamma and tau YP_215512.1 585264 D 321314 CDS YP_215513.1 62179096 587238..587567 1 NC_006905.1 hypothetical protein 587567 ybaB 321314000765 ybaB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215513.1 587238 D 321314 CDS YP_215514.1 62179097 587567..588172 1 NC_006905.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 588172 recR 321314000766 recR Salmonella enterica subsp. enterica serovar Choleraesuis str. recombination protein RecR YP_215514.1 587567 D 321314 CDS YP_215515.1 62179098 588259..590157 1 NC_006905.1 molecular chaperone; heat shock protein 90 590157 htpG 321314000767 htpG Salmonella enterica subsp. enterica serovar Choleraesuis str. heat shock protein 90 YP_215515.1 588259 D 321314 CDS YP_215516.1 62179099 590399..591043 1 NC_006905.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 591043 adk 321314000768 adk Salmonella enterica subsp. enterica serovar Choleraesuis str. adenylate kinase YP_215516.1 590399 D 321314 CDS YP_215517.1 62179100 591056..591262 1 NC_006905.1 hypothetical protein 591262 321314000769 SC0530 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215517.1 591056 D 321314 CDS YP_215518.1 62179101 591272..592234 1 NC_006905.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 592234 hemH 321314000770 hemH Salmonella enterica subsp. enterica serovar Choleraesuis str. ferrochelatase YP_215518.1 591272 D 321314 CDS YP_215519.1 62179102 complement(592231..593202) 1 NC_006905.1 IPR000379: Esterase/lipase/thioesterase; IPR002168: Lipolytic enzyme; acetyl esterase 593202 aes 321314000771 aes Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl esterase YP_215519.1 592231 R 321314 CDS YP_215520.1 62179103 593310..594659 1 NC_006905.1 IPR002173: Carbohydrate kinase, PfkB; inosine-guanosine kinase 594659 gsk 321314000772 gsk Salmonella enterica subsp. enterica serovar Choleraesuis str. inosine-guanosine kinase YP_215520.1 593310 D 321314 CDS YP_215521.1 62179104 complement(594708..596384) 1 NC_006905.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; cation:proton antiport protein 596384 ybaL 321314000773 ybaL Salmonella enterica subsp. enterica serovar Choleraesuis str. cation:proton antiport protein YP_215521.1 594708 R 321314 CDS YP_215522.1 62179105 complement(596599..597819) 1 NC_006905.1 IPR007114: Major facilitator superfamily; MFS family transporter 597819 fsr 321314000774 fsr Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter YP_215522.1 596599 R 321314 CDS YP_215523.1 62179106 597992..599644 1 NC_006905.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 599644 ushA 321314000775 ushA Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_215523.1 597992 D 321314 CDS YP_215524.1 62179107 complement(599761..600240) 1 NC_006905.1 hypothetical protein 600240 ybaK 321314000776 ybaK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215524.1 599761 R 321314 CDS YP_215525.1 62179108 complement(600442..601236) 1 NC_006905.1 hypothetical protein 601236 ybaP 321314000777 ybaP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215525.1 600442 R 321314 CDS YP_215526.1 62179109 complement(602302..604803) 1 NC_006905.1 IPR000150: Cof protein; IPR000695: H+ transporting ATPase, proton pump; IPR001756: Copper-transporting ATPase;IPR001757: ATPase, E1-E2 type;IPR006121: Heavy metal transport/detoxification protein;IPR006191: Heavy metal binding; copper exporting ATPase 604803 copA 321314000779 copA Salmonella enterica subsp. enterica serovar Choleraesuis str. copper exporting ATPase YP_215526.1 602302 R 321314 CDS YP_215527.1 62179110 604913..605329 1 NC_006905.1 activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 605329 cueR 321314000780 cueR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator CueR YP_215527.1 604913 D 321314 CDS YP_215528.1 62179111 complement(605330..605782) 1 NC_006905.1 hypothetical protein 605782 ybbJ 321314000781 ybbJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215528.1 605330 R 321314 CDS YP_215529.1 62179112 complement(605779..606696) 1 NC_006905.1 IPR001972: Stomatin; hypothetical protein 606696 ybbK 321314000782 ybbK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215529.1 605779 R 321314 CDS YP_215530.1 62179113 606843..607520 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter ATP-binding protein 607520 ybbL 321314000783 ybbL Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATP-binding protein YP_215530.1 606843 D 321314 CDS YP_215531.1 62179114 607507..608286 1 NC_006905.1 hypothetical protein 608286 ybbM 321314000784 ybbM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215531.1 607507 D 321314 CDS YP_215532.1 62179115 complement(608372..609226) 1 NC_006905.1 IPR006663: Thioredoxin domain 2; thioredoxin protein 609226 ybbN 321314000785 ybbN Salmonella enterica subsp. enterica serovar Choleraesuis str. thioredoxin protein YP_215532.1 608372 R 321314 CDS YP_215533.1 62179116 complement(609286..610056) 1 NC_006905.1 IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; short chain dehydrogenase 610056 ybbO 321314000786 ybbO Salmonella enterica subsp. enterica serovar Choleraesuis str. short chain dehydrogenase YP_215533.1 609286 R 321314 CDS YP_215534.1 62179117 complement(610211..610858) 1 NC_006905.1 IPR001087: Lipolytic enzyme, G-D-S-L family; IPR008265: Lipolytic enzyme, G-D-S-L, active site; multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 610858 tesA 321314000787 tesA Salmonella enterica subsp. enterica serovar Choleraesuis str. multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 YP_215534.1 610211 R 321314 CDS YP_215535.1 62179118 610796..611482 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR006073: GTP1/OBG; ABC transporter ATP-binding protein 611482 ybbA 321314000788 ybbA Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATP-binding protein YP_215535.1 610796 D 321314 CDS YP_215536.1 62179119 611479..613893 1 NC_006905.1 hypothetical protein 613893 ybbP 321314000789 ybbP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215536.1 611479 D 321314 CDS YP_215537.1 62179120 614079..615212 1 NC_006905.1 outer membrane protein 615212 321314000790 SC0550 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_215537.1 614079 D 321314 CDS YP_215538.1 62179121 615469..616299 1 NC_006905.1 ABC-type transport system ATPase/cell division protein 616299 sfbA 321314000791 sfbA Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC-type transport system ATPase/cell division protein YP_215538.1 615469 D 321314 CDS YP_215539.1 62179122 616336..617352 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC-type transport system ATPase/cell division protein 617352 sfbB 321314000792 sfbB Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC-type transport system ATPase/cell division protein YP_215539.1 616336 D 321314 CDS YP_215540.1 62179123 617345..618004 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 618004 sfbC 321314000793 sfbC Salmonella enterica subsp. enterica serovar Choleraesuis str. binding-protein-dependent transport system inner membrane protein YP_215540.1 617345 D 321314 CDS YP_215541.1 62179124 complement(618043..619137) 1 NC_006905.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 619137 ybbB 321314000794 ybbB Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA 2-selenouridine synthase YP_215541.1 618043 R 321314 CDS YP_215542.1 62179125 complement(619171..620133) 1 NC_006905.1 activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS 620133 ybbS 321314000795 ybbS Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator AllS YP_215542.1 619171 R 321314 CDS YP_215543.1 62179126 620360..620842 1 NC_006905.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 620842 allA 321314000796 allA Salmonella enterica subsp. enterica serovar Choleraesuis str. ureidoglycolate hydrolase YP_215543.1 620360 D 321314 CDS YP_215544.1 62179127 620921..621739 1 NC_006905.1 regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 621739 allR 321314000797 allR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional repressor AllR YP_215544.1 620921 D 321314 CDS YP_215545.1 62179128 623626..624402 1 NC_006905.1 IPR000560: Histidine acid phosphatase; hydroxypyruvate isomerase 624402 gip 321314000799 gip Salmonella enterica subsp. enterica serovar Choleraesuis str. hydroxypyruvate isomerase YP_215545.1 623626 D 321314 CDS YP_215546.1 62179129 624503..625381 1 NC_006905.1 IPR002204: 3-hydroxyisobutyrate dehydrogenase; tartronic semialdehyde reductase 625381 glxR 321314000800 glxR Salmonella enterica subsp. enterica serovar Choleraesuis str. tartronic semialdehyde reductase YP_215546.1 624503 D 321314 CDS YP_215547.1 62179130 625447..626694 1 NC_006905.1 IPR007114: Major facilitator superfamily; permease 626694 yhjE 321314000801 yhjE Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_215547.1 625447 D 321314 CDS YP_215548.1 62179131 626790..628244 1 NC_006905.1 IPR001248: Permease for cytosine/purines, uracil, thiamine, allantoin; allantoin permease 628244 allP 321314000802 allP Salmonella enterica subsp. enterica serovar Choleraesuis str. allantoin permease YP_215548.1 626790 D 321314 CDS YP_215549.1 62179132 628323..629684 1 NC_006905.1 Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 629684 allB 321314000803 allB Salmonella enterica subsp. enterica serovar Choleraesuis str. allantoinase YP_215549.1 628323 D 321314 CDS YP_215550.1 62179133 629743..631041 1 NC_006905.1 IPR000531: TonB-dependent receptor protein; purine permease YbbY 631041 ybbY 321314000804 ybbY Salmonella enterica subsp. enterica serovar Choleraesuis str. purine permease YbbY YP_215550.1 629743 D 321314 CDS YP_215551.1 62179134 631064..632212 1 NC_006905.1 glycerate kinase 632212 glxK 321314000805 glxK Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerate kinase YP_215551.1 631064 D 321314 CDS YP_215552.1 62179135 complement(632292..633077) 1 NC_006905.1 hypothetical protein 633077 ylbA 321314000806 ylbA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215552.1 632292 R 321314 CDS YP_215553.1 62179136 complement(633088..634323) 1 NC_006905.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 634323 allC 321314000807 allC Salmonella enterica subsp. enterica serovar Choleraesuis str. allantoate amidohydrolase YP_215553.1 633088 R 321314 CDS YP_215554.1 62179137 complement(634345..635394) 1 NC_006905.1 IPR001064: Beta and gamma crystallin; ureidoglycolate dehydrogenase 635394 allD 321314000808 allD Salmonella enterica subsp. enterica serovar Choleraesuis str. ureidoglycolate dehydrogenase YP_215554.1 634345 R 321314 CDS YP_215555.1 62179138 635710..637374 1 NC_006905.1 multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 637374 fdrA 321314000809 fdrA Salmonella enterica subsp. enterica serovar Choleraesuis str. membrane protein FdrA YP_215555.1 635710 D 321314 CDS YP_215556.1 62179139 637384..638643 1 NC_006905.1 hypothetical protein 638643 ylbE 321314000810 ylbE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215556.1 637384 D 321314 CDS YP_215557.1 62179140 638655..639464 1 NC_006905.1 hypothetical protein 639464 ylbF 321314000811 ylbF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215557.1 638655 D 321314 CDS YP_215558.1 62179141 639468..640361 1 NC_006905.1 forms a homodimer; may be used to synthesize carbomyl phosphate from ATP and carbamate; carbamate kinase 640361 arcC 321314000812 arcC Salmonella enterica subsp. enterica serovar Choleraesuis str. carbamate kinase YP_215558.1 639468 D 321314 CDS YP_215559.1 62179142 complement(640402..641469) 1 NC_006905.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 641469 purK 321314000813 purK Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoribosylaminoimidazole carboxylase ATPase subunit YP_215559.1 640402 R 321314 CDS YP_215560.1 62179143 complement(641466..641975) 1 NC_006905.1 Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit 641975 purE 321314000814 purE Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoribosylaminoimidazole carboxylase catalytic subunit YP_215560.1 641466 R 321314 CDS YP_215561.1 62179144 complement(642093..642815) 1 NC_006905.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 642815 lpxH 321314000815 lpxH Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-2,3-diacylglucosamine hydrolase YP_215561.1 642093 R 321314 CDS YP_215562.1 62179145 complement(642818..643312) 1 NC_006905.1 IPR002130: Peptidyl-prolyl cis-trans isomerase, cyclophilin type; peptidyl-prolyl cis-trans isomerase B 643312 ppiB 321314000816 ppiB Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidyl-prolyl cis-trans isomerase B YP_215562.1 642818 R 321314 CDS YP_215563.1 62179146 643485..644870 1 NC_006905.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 644870 cysS 321314000817 cysS Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteinyl-tRNA synthetase YP_215563.1 643485 D 321314 CDS YP_215564.1 62179147 complement(644914..645738) 1 NC_006905.1 outer membrane protein 645738 321314000818 SC0577 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_215564.1 644914 R 321314 CDS YP_215565.1 62179148 complement(645735..646172) 1 NC_006905.1 inner membrane protein 646172 321314000819 SC0578 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215565.1 645735 R 321314 CDS YP_215566.1 62179149 complement(646165..646710) 1 NC_006905.1 membrane-bound metal-dependent hydrolase 646710 ybcI 321314000820 ybcI Salmonella enterica subsp. enterica serovar Choleraesuis str. membrane-bound metal-dependent hydrolase YP_215566.1 646165 R 321314 CDS YP_215567.2 162139606 complement(646837..647049) 1 NC_006905.1 IPR002942: RNA-binding S4; hypothetical protein 647049 ybcJ 321314000821 ybcJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215567.2 646837 R 321314 CDS YP_215568.1 62179151 complement(647051..647917) 1 NC_006905.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 647917 folD 321314000822 folD Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_215568.1 647051 R 321314 CDS YP_215569.1 62179152 648395..649018 1 NC_006905.1 major type 1 subunit fimbrin (pilin) 649018 fimA 321314000823 fimA Salmonella enterica subsp. enterica serovar Choleraesuis str. major type 1 subunit fimbrin (pilin) YP_215569.1 648395 D 321314 CDS YP_215570.1 62179153 649094..649627 1 NC_006905.1 fimbrial protein 649627 fimI 321314000824 fimI Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial protein YP_215570.1 649094 D 321314 CDS YP_215572.1 62179155 651732..654350 1 NC_006905.1 IPR000015: Fimbrial biogenesis outer membrane usher protein; outer membrane usher protein 654350 fimD 321314000826 fimD Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane usher protein YP_215572.1 651732 D 321314 CDS YP_215573.1 62179156 654365..655372 1 NC_006905.1 minor fimbrial subunit 655372 fimH 321314000827 fimH Salmonella enterica subsp. enterica serovar Choleraesuis str. minor fimbrial subunit YP_215573.1 654365 D 321314 CDS YP_215574.1 62179157 655382..655900 1 NC_006905.1 fimbrial protein 655900 fimF 321314000828 fimF Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial protein YP_215574.1 655382 D 321314 CDS YP_215575.1 62179158 complement(655946..656671) 1 NC_006905.1 activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ 656671 fimZ 321314000829 fimZ Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator FimZ YP_215575.1 655946 R 321314 CDS YP_215576.1 62179159 complement(657182..657904) 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; regulatory protein 657904 fimY 321314000830 fimY Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein YP_215576.1 657182 R 321314 CDS YP_215577.1 62179160 complement(658397..658993) 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; fimbrial protein 658993 fimW 321314000832 fimW Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial protein YP_215577.1 658397 R 321314 CDS YP_215578.1 62179161 658967..659185 1 NC_006905.1 hypothetical protein 659185 321314000833 SC0591 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215578.1 658967 D 321314 CDS YP_215579.1 62179162 660997..661359 1 NC_006905.1 glycosyl translocase 661359 rfbI 321314000836 rfbI Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl translocase YP_215579.1 660997 D 321314 CDS YP_215580.1 62179163 661356..662282 1 NC_006905.1 IPR001173: Glycosyl transferase, family 2; glycosyltransferase 662282 yfdH 321314000837 yfdH Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyltransferase YP_215580.1 661356 D 321314 CDS YP_215581.1 62179164 662279..663865 1 NC_006905.1 hypothetical protein 663865 321314000838 SC0594 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215581.1 662279 D 321314 CDS YP_215582.1 62179165 complement(665193..666647) 1 NC_006905.1 hypothetical protein 666647 321314000839 SC0595 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215582.1 665193 R 321314 CDS YP_215583.1 62179166 complement(666637..667563) 1 NC_006905.1 IPR001173: Glycosyl transferase, family 2; glycosyltransferase 667563 yfdH 321314000840 yfdH Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyltransferase YP_215583.1 666637 R 321314 CDS YP_215584.1 62179167 complement(667560..667922) 1 NC_006905.1 glycosyl translocase 667922 rfbI 321314000841 rfbI Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl translocase YP_215584.1 667560 R 321314 CDS YP_215585.1 62179168 668351..668575 1 NC_006905.1 IPR000504: RNA-binding region RNP-1 (RNA recognition motif); hypothetical protein 668575 321314000842 SC0598 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215585.1 668351 D 321314 CDS YP_215586.1 62179169 complement(668790..669119) 1 NC_006905.1 IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensor protein 669119 cusS 321314000843 cusS Salmonella enterica subsp. enterica serovar Choleraesuis str. sensor protein YP_215586.1 668790 R 321314 CDS YP_215587.1 62179170 complement(669410..670264) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 670264 ykgD 321314000844 ykgD Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_215587.1 669410 R 321314 CDS YP_215588.1 62179171 670480..671805 1 NC_006905.1 Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 671805 ykgC 321314000845 ykgC Salmonella enterica subsp. enterica serovar Choleraesuis str. pyridine nucleotide-disulfide oxidoreductase YP_215588.1 670480 D 321314 CDS YP_215589.1 62179172 671962..672198 1 NC_006905.1 hypothetical protein 672198 ykgI 321314000846 ykgI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215589.1 671962 D 321314 CDS YP_215590.1 62179173 672211..672771 1 NC_006905.1 hypothetical protein 672771 ykgB 321314000847 ykgB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215590.1 672211 D 321314 CDS YP_215591.1 62179174 complement(672850..674025) 1 NC_006905.1 hypothetical protein 674025 321314000848 SC0604 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215591.1 672850 R 321314 CDS YP_215592.1 62179175 674351..675745 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; IPR004840: Amino acid permease; phenylalanine transporter 675745 pheP 321314000849 pheP Salmonella enterica subsp. enterica serovar Choleraesuis str. phenylalanine transporter YP_215592.1 674351 D 321314 CDS YP_215593.1 62179176 complement(675787..677034) 1 NC_006905.1 hypothetical protein 677034 ybdG 321314000850 ybdG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215593.1 675787 R 321314 CDS YP_215594.1 62179177 677064..677246 1 NC_006905.1 hypothetical protein 677246 321314000851 SC0607 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215594.1 677064 D 321314 CDS YP_215595.1 62179178 677345..679315 1 NC_006905.1 IPR001087: Lipolytic enzyme, G-D-S-L family; outer membrane N-acetyl phenylalanine beta-naphthyl ester-cleaving esterase 679315 apeE 321314000852 apeE Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane N-acetyl phenylalanine beta-naphthyl ester-cleaving esterase YP_215595.1 677345 D 321314 CDS YP_215596.1 62179179 complement(679581..680234) 1 NC_006905.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 680234 nfnB 321314000853 nfnB Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydropteridine reductase YP_215596.1 679581 R 321314 CDS YP_215597.1 62179180 complement(680331..680699) 1 NC_006905.1 hypothetical protein 680699 ybdF 321314000854 ybdF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215597.1 680331 R 321314 CDS YP_215598.1 62179181 complement(680699..681280) 1 NC_006905.1 IPR001647: Bacterial regulatory protein TetR, HTH motif; regulatory protein 681280 321314000855 SC0611 Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein YP_215598.1 680699 R 321314 CDS YP_215599.1 62179182 681569..681910 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; regulatory protein 681910 ramA 321314000856 ramA Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein YP_215599.1 681569 D 321314 CDS YP_215600.1 62179183 complement(681916..682164) 1 NC_006905.1 hypothetical protein 682164 ybdJ 321314000857 ybdJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215600.1 681916 R 321314 CDS YP_215601.1 62179184 complement(682231..683349) 1 NC_006905.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 683349 ybdK 321314000858 ybdK Salmonella enterica subsp. enterica serovar Choleraesuis str. carboxylate-amine ligase YP_215601.1 682231 R 321314 CDS YP_215602.1 62179185 complement(683361..684065) 1 NC_006905.1 IPR003542: Enterobactin synthetase, component D; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 684065 entD 321314000859 entD Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex YP_215602.1 683361 R 321314 CDS YP_215603.1 62179186 complement(684111..686366) 1 NC_006905.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 686366 fepA 321314000860 fepA Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane receptor FepA YP_215603.1 684111 R 321314 CDS YP_215604.1 62179187 686546..687769 1 NC_006905.1 IPR000379: Esterase/lipase/thioesterase; enterobactin/ferric enterobactin esterase 687769 fes 321314000861 fes Salmonella enterica subsp. enterica serovar Choleraesuis str. enterobactin/ferric enterobactin esterase YP_215604.1 686546 D 321314 CDS YP_215605.1 62179188 687800..688018 1 NC_006905.1 hypothetical protein 688018 ybdZ 321314000862 ybdZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215605.1 687800 D 321314 CDS YP_215606.1 62179189 688015..691899 1 NC_006905.1 with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 691899 entF 321314000863 entF Salmonella enterica subsp. enterica serovar Choleraesuis str. enterobactin synthase subunit F YP_215606.1 688015 D 321314 CDS YP_215607.1 62179190 692122..693285 1 NC_006905.1 part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 693285 fepE 321314000864 fepE Salmonella enterica subsp. enterica serovar Choleraesuis str. ferric enterobactin transport protein FepE YP_215607.1 692122 D 321314 CDS YP_215608.1 62179191 complement(693339..694133) 1 NC_006905.1 with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein 694133 fepC 321314000865 fepC Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-enterobactin transporter ATP-binding protein YP_215608.1 693339 R 321314 CDS YP_215609.1 62179192 complement(694130..695122) 1 NC_006905.1 with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease 695122 fepG 321314000866 fepG Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-enterobactin transporter permease YP_215609.1 694130 R 321314 CDS YP_215610.1 62179193 complement(695119..696126) 1 NC_006905.1 with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein 696126 fepD 321314000867 fepD Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-enterobactin transporter membrane protein YP_215610.1 695119 R 321314 CDS YP_215611.1 62179194 696237..697481 1 NC_006905.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 697481 ybdA 321314000868 ybdA Salmonella enterica subsp. enterica serovar Choleraesuis str. enterobactin exporter EntS YP_215611.1 696237 D 321314 CDS YP_215612.1 62179195 complement(697544..698500) 1 NC_006905.1 with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 698500 fepB 321314000869 fepB Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-enterobactin transporter periplasmic binding protein YP_215612.1 697544 R 321314 CDS YP_215613.2 162139605 698809..699984 1 NC_006905.1 synthesizes isochorismate acid from chorismate; isochorismate synthase 699984 entC 321314000870 entC Salmonella enterica subsp. enterica serovar Choleraesuis str. isochorismate synthase YP_215613.2 698809 D 321314 CDS YP_215614.1 62179197 699994..701604 1 NC_006905.1 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 701604 entE 321314000871 entE Salmonella enterica subsp. enterica serovar Choleraesuis str. enterobactin synthase subunit E YP_215614.1 699994 D 321314 CDS YP_215615.1 62179198 701618..702475 1 NC_006905.1 IPR003881: Isochorismatase; IPR006163: Phosphopantetheine-binding domain; 2,3-dihydro-2,3-dihydroxybenzoate synthetase 702475 entB 321314000872 entB Salmonella enterica subsp. enterica serovar Choleraesuis str. 2,3-dihydro-2,3-dihydroxybenzoate synthetase YP_215615.1 701618 D 321314 CDS YP_215616.1 62179199 702475..703230 1 NC_006905.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 703230 entA 321314000873 entA Salmonella enterica subsp. enterica serovar Choleraesuis str. 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_215616.1 702475 D 321314 CDS YP_215617.1 62179200 703233..703646 1 NC_006905.1 hypothetical protein 703646 ybdB 321314000874 ybdB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215617.1 703233 D 321314 CDS YP_215618.1 62179201 703828..705927 1 NC_006905.1 carbon starvation protein 705927 cstA 321314000875 cstA Salmonella enterica subsp. enterica serovar Choleraesuis str. carbon starvation protein YP_215618.1 703828 D 321314 CDS YP_215619.1 62179202 705991..706188 1 NC_006905.1 hypothetical protein 706188 ybdD 321314000876 ybdD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215619.1 705991 D 321314 CDS YP_215620.1 62179203 complement(706224..707312) 1 NC_006905.1 member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein 707312 ybdH 321314000877 ybdH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215620.1 706224 R 321314 CDS YP_215621.1 62179204 707403..708599 1 NC_006905.1 catalyzes the transfer of an amino moiety; aminotransferase 708599 ybdL 321314000878 ybdL Salmonella enterica subsp. enterica serovar Choleraesuis str. aminotransferase YP_215621.1 707403 D 321314 CDS YP_215622.1 62179205 complement(708600..709217) 1 NC_006905.1 hypothetical protein 709217 ybdM 321314000879 ybdM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215622.1 708600 R 321314 CDS YP_215623.1 62179206 complement(709190..710425) 1 NC_006905.1 bifunctional 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase/FAD synthetase 710425 ybdN 321314000880 ybdN Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase/FAD synthetase YP_215623.1 709190 R 321314 CDS YP_215624.1 62179207 complement(710591..711493) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 711493 ybdO 321314000881 ybdO Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_215624.1 710591 R 321314 CDS YP_215625.1 62179208 complement(711810..712556) 1 NC_006905.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 712556 dsbG 321314000882 dsbG Salmonella enterica subsp. enterica serovar Choleraesuis str. disulfide isomerase/thiol-disulfide oxidase YP_215625.1 711810 R 321314 CDS YP_215626.1 62179209 712997..713560 1 NC_006905.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase 713560 ahpC 321314000883 ahpC Salmonella enterica subsp. enterica serovar Choleraesuis str. alkyl hydroperoxide reductase YP_215626.1 712997 D 321314 CDS YP_215627.1 62179210 713802..715367 1 NC_006905.1 IPR000103: Pyridine nucleotide-disulphide oxidoreductase, class-II; IPR000759: Adrenodoxin reductase; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I;IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;IPR003042: Aromatic-ring hydroxylase;IPR008255: Pyridine nucleotide-disulphide oxidoreductase, class-II, active site; alkyl hydroperoxide reductase 715367 ahpF 321314000884 ahpF Salmonella enterica subsp. enterica serovar Choleraesuis str. alkyl hydroperoxide reductase YP_215627.1 713802 D 321314 CDS YP_215628.1 62179211 715700..716260 1 NC_006905.1 hypothetical protein 716260 321314000885 SC0641 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215628.1 715700 D 321314 CDS YP_215629.1 62179212 716253..718532 1 NC_006905.1 oxidoreductase 718532 yyaE 321314000886 yyaE Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_215629.1 716253 D 321314 CDS YP_215630.1 62179213 718529..719086 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; hydrogenase 719086 dmsB 321314000887 dmsB Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase YP_215630.1 718529 D 321314 CDS YP_215631.1 62179214 719086..719853 1 NC_006905.1 hydrogenase 719853 ynfH 321314000888 ynfH Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase YP_215631.1 719086 D 321314 CDS YP_215632.1 62179215 complement(719921..720349) 1 NC_006905.1 IPR006015: Universal stress protein (Usp); universal stress protein UspA and related nucleotide-binding protein 720349 ybdQ 321314000889 ybdQ Salmonella enterica subsp. enterica serovar Choleraesuis str. universal stress protein UspA and related nucleotide-binding protein YP_215632.1 719921 R 321314 CDS YP_215633.1 62179216 complement(721894..722304) 1 NC_006905.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 722304 rnk 321314000891 rnk Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleoside diphosphate kinase regulator YP_215633.1 721894 R 321314 CDS YP_215634.1 62179217 complement(723456..724919) 1 NC_006905.1 DASS family citrate:succinate transporter 724919 citT 321314000893 citT Salmonella enterica subsp. enterica serovar Choleraesuis str. DASS family citrate:succinate transporter YP_215634.1 723456 R 321314 CDS YP_215635.1 62179218 complement(724957..725853) 1 NC_006905.1 catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 725853 citG 321314000894 citG Salmonella enterica subsp. enterica serovar Choleraesuis str. triphosphoribosyl-dephospho-CoA synthase YP_215635.1 724957 R 321314 CDS YP_215636.1 62179219 complement(725825..726376) 1 NC_006905.1 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 726376 citX 321314000895 citX Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase YP_215636.1 725825 R 321314 CDS YP_215637.1 62179220 complement(726380..727909) 1 NC_006905.1 bifunctional; citrate lyase subunit alpha/citrate-ACP transferase 727909 citF 321314000896 citF Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate lyase subunit alpha/citrate-ACP transferase YP_215637.1 726380 R 321314 CDS YP_215638.1 62179221 complement(727919..728827) 1 NC_006905.1 citrate lyase subunit beta 728827 citE 321314000897 citE Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate lyase subunit beta YP_215638.1 727919 R 321314 CDS YP_215639.1 62179222 complement(728824..729120) 1 NC_006905.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 729120 citD 321314000898 citD Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate lyase subunit gamma YP_215639.1 728824 R 321314 CDS YP_215640.1 62179223 complement(729117..730193) 1 NC_006905.1 IPR000182: GCN5-related N-acetyltransferase; IPR004821: Cytidyltransferase-related domain; IPR005216: Citrate lyase ligase; citrate lyase synthetase 730193 citC 321314000899 citC Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate lyase synthetase YP_215640.1 729117 R 321314 CDS YP_215641.1 62179224 730386..730568 1 NC_006905.1 hypothetical protein 730568 321314000900 SC0654 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215641.1 730386 D 321314 CDS YP_215642.1 62179225 730578..732239 1 NC_006905.1 IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensory histidine kinase in two-component regulatory system with DpiA, regulation of cit operon and plasmid inheritance genes 732239 dpiB 321314000901 dpiB Salmonella enterica subsp. enterica serovar Choleraesuis str. sensory histidine kinase in two-component regulatory system with DpiA, regulation of cit operon and plasmid inheritance genes YP_215642.1 730578 D 321314 CDS YP_215643.1 62179226 732340..732888 1 NC_006905.1 regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 732888 dpiA 321314000902 dpiA Salmonella enterica subsp. enterica serovar Choleraesuis str. two-component response regulator DpiA YP_215643.1 732340 D 321314 CDS YP_215644.1 62179227 complement(732942..734327) 1 NC_006905.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 734327 dcuC 321314000903 dcuC Salmonella enterica subsp. enterica serovar Choleraesuis str. C4-dicarboxylate transporter DcuC YP_215644.1 732942 R 321314 CDS YP_215645.2 162139604 735462..735671 1 NC_006905.1 member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 735671 cspE 321314000905 cspE Salmonella enterica subsp. enterica serovar Choleraesuis str. cold shock protein CspE YP_215645.2 735462 D 321314 CDS YP_215646.1 62179229 complement(735729..736112) 1 NC_006905.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 736112 ccrB 321314000906 ccrB Salmonella enterica subsp. enterica serovar Choleraesuis str. camphor resistance protein CrcB YP_215646.1 735729 R 321314 CDS YP_215647.1 62179230 736203..736991 1 NC_006905.1 IPR001110: Protein of unknown function UPF0012; IPR003010: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; hydrolase 736991 ybeM 321314000907 ybeM Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase YP_215647.1 736203 D 321314 CDS YP_215648.1 62179231 737120..737323 1 NC_006905.1 TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase E 737323 tatE 321314000908 tatE Salmonella enterica subsp. enterica serovar Choleraesuis str. twin arginine translocase E YP_215648.1 737120 D 321314 CDS YP_215649.1 62179232 complement(737409..738374) 1 NC_006905.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 738374 lipA 321314000909 lipA Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoyl synthase YP_215649.1 737409 R 321314 CDS YP_215650.1 62179233 complement(738580..739533) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; DNA-binding transcriptional regulator 739533 ybeF 321314000910 ybeF Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator YP_215650.1 738580 R 321314 CDS YP_215651.1 62179234 complement(739835..740410) 1 NC_006905.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 740410 lipB 321314000911 lipB Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoate-protein ligase B YP_215651.1 739835 R 321314 CDS YP_215652.1 62179235 complement(740576..740872) 1 NC_006905.1 hypothetical protein 740872 ybeD 321314000912 ybeD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215652.1 740576 R 321314 CDS YP_215653.1 62179236 complement(740948..742159) 1 NC_006905.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase 742159 dacA 321314000913 dacA Salmonella enterica subsp. enterica serovar Choleraesuis str. D-alanyl-D-alanine carboxypeptidase YP_215653.1 740948 R 321314 CDS YP_215654.1 62179237 742179..742328 1 NC_006905.1 hypothetical protein 742328 321314000914 SC0667 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215654.1 742179 D 321314 CDS YP_215655.1 62179238 complement(742299..743444) 1 NC_006905.1 rare lipoprotein A 743444 rlpA 321314000915 rlpA Salmonella enterica subsp. enterica serovar Choleraesuis str. rare lipoprotein A YP_215655.1 742299 R 321314 CDS YP_215656.1 62179239 complement(743455..744567) 1 NC_006905.1 IPR001182: Cell cycle protein; cell wall shape-determining protein 744567 mrdB 321314000916 mrdB Salmonella enterica subsp. enterica serovar Choleraesuis str. cell wall shape-determining protein YP_215656.1 743455 R 321314 CDS YP_215657.1 62179240 complement(744570..746471) 1 NC_006905.1 penicillin-binding protein 2 746471 mrdA 321314000917 mrdA Salmonella enterica subsp. enterica serovar Choleraesuis str. penicillin-binding protein 2 YP_215657.1 744570 R 321314 CDS YP_215658.1 62179241 complement(746502..746969) 1 NC_006905.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 746969 ybeA 321314000918 ybeA Salmonella enterica subsp. enterica serovar Choleraesuis str. rRNA large subunit methyltransferase YP_215658.1 746502 R 321314 CDS YP_215659.1 62179242 complement(746973..747290) 1 NC_006905.1 hypothetical protein 747290 ybeB 321314000919 ybeB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215659.1 746973 R 321314 CDS YP_215660.1 62179243 complement(747619..748227) 1 NC_006905.1 IPR001345: Phosphoglycerate/bisphosphoglycerate mutase; alpha ribazole-5'-P phosphatase 748227 cobC 321314000920 cobC Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha ribazole-5'-P phosphatase YP_215660.1 747619 R 321314 CDS YP_215661.1 62179244 748324..749418 1 NC_006905.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 749418 cobD 321314000921 cobD Salmonella enterica subsp. enterica serovar Choleraesuis str. threonine-phosphate decarboxylase YP_215661.1 748324 D 321314 CDS YP_215662.1 62179245 complement(749393..750034) 1 NC_006905.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 750034 nadD 321314000922 nadD Salmonella enterica subsp. enterica serovar Choleraesuis str. nicotinic acid mononucleotide adenylyltransferase YP_215662.1 749393 R 321314 CDS YP_215663.1 62179246 complement(750036..751067) 1 NC_006905.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 751067 holA 321314000923 holA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase III subunit delta YP_215663.1 750036 R 321314 CDS YP_215664.1 62179247 complement(751067..751657) 1 NC_006905.1 rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB 751657 rlpB 321314000924 rlpB Salmonella enterica subsp. enterica serovar Choleraesuis str. LPS-assembly lipoprotein RlpB YP_215664.1 751067 R 321314 CDS YP_215665.1 62179248 complement(751672..754347) 1 NC_006905.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 754347 leuS 321314000925 leuS Salmonella enterica subsp. enterica serovar Choleraesuis str. leucyl-tRNA synthetase YP_215665.1 751672 R 321314 CDS YP_215666.1 62179249 754542..754832 1 NC_006905.1 hydrolase N-terminus 754832 uxaA 321314000926 uxaA Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase N-terminus YP_215666.1 754542 D 321314 CDS YP_215667.1 62179250 756068..757021 1 NC_006905.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 757021 kdg 321314000928 kdg Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-keto-3-deoxygluconate permease YP_215667.1 756068 D 321314 CDS YP_215668.1 62179251 757089..759017 1 NC_006905.1 IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; sigma-54 dependent transcriptional regulator 759017 yqiR 321314000929 yqiR Salmonella enterica subsp. enterica serovar Choleraesuis str. sigma-54 dependent transcriptional regulator YP_215668.1 757089 D 321314 CDS YP_215669.1 62179252 759110..759583 1 NC_006905.1 hypothetical protein 759583 ybeL 321314000930 ybeL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215669.1 759110 D 321314 CDS YP_215670.1 62179253 complement(759622..760617) 1 NC_006905.1 hypothetical protein 760617 ybeQ 321314000931 ybeQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215670.1 759622 R 321314 CDS YP_215671.1 62179254 760742..761449 1 NC_006905.1 hypothetical protein 761449 ybeR 321314000932 ybeR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215671.1 760742 D 321314 CDS YP_215672.1 62179255 761446..762879 1 NC_006905.1 IPR001623: Heat shock protein DnaJ, N-terminal; DnaJ family molecular chaperone 762879 ybeS 321314000933 ybeS Salmonella enterica subsp. enterica serovar Choleraesuis str. DnaJ family molecular chaperone YP_215672.1 761446 D 321314 CDS YP_215673.1 62179256 762891..763586 1 NC_006905.1 hypothetical protein 763586 ybeU 321314000934 ybeU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215673.1 762891 D 321314 CDS YP_215674.1 62179257 complement(765068..766747) 1 NC_006905.1 IPR001023: Heat shock protein Hsp70; molecular chaperone DnaK 766747 321314000936 SC0687 Salmonella enterica subsp. enterica serovar Choleraesuis str. molecular chaperone DnaK YP_215674.1 765068 R 321314 CDS YP_215675.1 62179258 complement(766823..768061) 1 NC_006905.1 hypothetical protein 768061 321314000937 SC0688 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215675.1 766823 R 321314 CDS YP_215676.1 62179259 complement(768093..769028) 1 NC_006905.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 769028 rihA 321314000938 rihA Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonucleoside hydrolase 1 YP_215676.1 768093 R 321314 CDS YP_215677.1 62179260 complement(769145..769870) 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; glutamate/aspartate ABC transporter ATP-binding protein 769870 gltL 321314000939 gltL Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate/aspartate ABC transporter ATP-binding protein YP_215677.1 769145 R 321314 CDS YP_215678.1 62179261 complement(769870..770544) 1 NC_006905.1 glutamate/aspartate ABC transporter 770544 gltK 321314000940 gltK Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate/aspartate ABC transporter YP_215678.1 769870 R 321314 CDS YP_215679.1 62179262 complement(770544..771284) 1 NC_006905.1 glutamate/aspartate ABC transporter 771284 gltJ 321314000941 gltJ Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate/aspartate ABC transporter YP_215679.1 770544 R 321314 CDS YP_215680.1 62179263 complement(771443..772369) 1 NC_006905.1 IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; glutamate and aspartate transporter subunit 772369 gltI 321314000942 gltI Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate and aspartate transporter subunit YP_215680.1 771443 R 321314 CDS YP_215681.1 62179264 complement(772706..774295) 1 NC_006905.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 774295 lnt 321314000943 lnt Salmonella enterica subsp. enterica serovar Choleraesuis str. apolipoprotein N-acyltransferase YP_215681.1 772706 R 321314 CDS YP_215682.1 62179265 complement(774264..775142) 1 NC_006905.1 IPR000644: CBS domain; hypothetical protein 775142 ybeX 321314000944 ybeX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215682.1 774264 R 321314 CDS YP_215683.1 62179266 complement(775300..775773) 1 NC_006905.1 IPR002036: Protein of unknown function UPF0054; metalloprotease 775773 ybeY 321314000945 ybeY Salmonella enterica subsp. enterica serovar Choleraesuis str. metalloprotease YP_215683.1 775300 R 321314 CDS YP_215684.1 62179267 complement(775770..776855) 1 NC_006905.1 IPR003714: PhoH-like protein; phosphate starvation-inducible protein, ATP-binding 776855 phoL 321314000946 phoL Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphate starvation-inducible protein, ATP-binding YP_215684.1 775770 R 321314 CDS YP_215685.1 62179268 complement(777021..778487) 1 NC_006905.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 778487 miaB 321314000947 miaB Salmonella enterica subsp. enterica serovar Choleraesuis str. (dimethylallyl)adenosine tRNA methylthiotransferase YP_215685.1 777021 R 321314 CDS YP_215686.1 62179269 778589..779764 1 NC_006905.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 779764 ubiF 321314000948 ubiF Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_215686.1 778589 D 321314 CDS YP_215688.1 62179271 complement(780825..782489) 1 NC_006905.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 782489 asnB 321314000956 asnB Salmonella enterica subsp. enterica serovar Choleraesuis str. asparagine synthetase B YP_215688.1 780825 R 321314 CDS YP_215689.1 62179272 complement(782779..783531) 1 NC_006905.1 UMP phosphatase 783531 nagD 321314000957 nagD Salmonella enterica subsp. enterica serovar Choleraesuis str. UMP phosphatase YP_215689.1 782779 R 321314 CDS YP_215690.1 62179273 complement(783578..784798) 1 NC_006905.1 IPR000600: ROK family; N-acetylglucosamine operon transcriptional repressor 784798 nagC 321314000958 nagC Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylglucosamine operon transcriptional repressor YP_215690.1 783578 R 321314 CDS YP_215691.1 62179274 complement(784803..785957) 1 NC_006905.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 785957 nagA 321314000959 nagA Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylglucosamine-6-phosphate deacetylase YP_215691.1 784803 R 321314 CDS YP_215692.1 62179275 complement(786017..786817) 1 NC_006905.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 786817 nagB 321314000960 nagB Salmonella enterica subsp. enterica serovar Choleraesuis str. glucosamine-6-phosphate deaminase YP_215692.1 786017 R 321314 CDS YP_215693.1 62179276 787144..789096 1 NC_006905.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunit IIABC 789096 nagE 321314000961 nagE Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system N-acetyl glucosamine specific transporter subunit IIABC YP_215693.1 787144 D 321314 CDS YP_215694.1 62179277 789307..790974 1 NC_006905.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 790974 glnS 321314000962 glnS Salmonella enterica subsp. enterica serovar Choleraesuis str. glutaminyl-tRNA synthetase YP_215694.1 789307 D 321314 CDS YP_215695.1 62179278 791426..792832 1 NC_006905.1 outer membrane protein 792832 ybfM 321314000963 ybfM Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_215695.1 791426 D 321314 CDS YP_215696.1 62179279 792882..793214 1 NC_006905.1 lipoprotein 793214 ybfN 321314000964 ybfN Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein YP_215696.1 792882 D 321314 CDS YP_215697.1 62179280 complement(793263..794567) 1 NC_006905.1 IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; citrate-proton symporter 794567 citA 321314000965 citA Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate-proton symporter YP_215697.1 793263 R 321314 CDS YP_215698.1 62179281 complement(795744..797147) 1 NC_006905.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 797147 frdA 321314000967 frdA Salmonella enterica subsp. enterica serovar Choleraesuis str. tricarballylate dehydrogenase YP_215698.1 795744 R 321314 CDS YP_215699.1 62179282 complement(797245..798171) 1 NC_006905.1 LysR family transcriptional regulator 798171 nacR 321314000968 nacR Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_215699.1 797245 R 321314 CDS YP_215700.1 62179283 complement(798286..798738) 1 NC_006905.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 798738 fur 321314000969 fur Salmonella enterica subsp. enterica serovar Choleraesuis str. ferric uptake regulator YP_215700.1 798286 R 321314 CDS YP_215701.1 62179284 complement(799020..799550) 1 NC_006905.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 799550 fldA 321314000970 fldA Salmonella enterica subsp. enterica serovar Choleraesuis str. flavodoxin FldA YP_215701.1 799020 R 321314 CDS YP_215702.1 62179285 complement(799701..799994) 1 NC_006905.1 LexA regulated protein 799994 ybfE 321314000971 ybfE Salmonella enterica subsp. enterica serovar Choleraesuis str. LexA regulated protein YP_215702.1 799701 R 321314 CDS YP_215703.1 62179286 complement(800128..800898) 1 NC_006905.1 IPR000379: Esterase/lipase/thioesterase; IPR003089: Alpha/beta hydrolase; hypothetical protein 800898 ybfF 321314000972 ybfF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215703.1 800128 R 321314 CDS YP_215704.2 162139603 801083..801625 1 NC_006905.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 801625 seqA 321314000973 seqA Salmonella enterica subsp. enterica serovar Choleraesuis str. replication initiation regulator SeqA YP_215704.2 801083 D 321314 CDS YP_215705.1 62179288 801650..803290 1 NC_006905.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 803290 pgm 321314000974 pgm Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglucomutase YP_215705.1 801650 D 321314 CDS YP_215706.1 62179289 complement(803405..803890) 1 NC_006905.1 hypothetical protein 803890 321314000975 SC0719 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215706.1 803405 R 321314 CDS YP_215707.1 62179290 complement(803955..805274) 1 NC_006905.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 805274 potE 321314000976 potE Salmonella enterica subsp. enterica serovar Choleraesuis str. putrescine transporter YP_215707.1 803955 R 321314 CDS YP_215708.1 62179291 complement(805271..807469) 1 NC_006905.1 IPR000310: Orn/Lys/Arg decarboxylase, major region; ornithine decarboxylase 807469 speF 321314000977 speF Salmonella enterica subsp. enterica serovar Choleraesuis str. ornithine decarboxylase YP_215708.1 805271 R 321314 CDS YP_215709.1 62179292 complement(808231..808908) 1 NC_006905.1 response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE 808908 kdpE 321314000978 kdpE Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator KdpE YP_215709.1 808231 R 321314 CDS YP_215710.1 62179293 complement(808905..811589) 1 NC_006905.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD 811589 kdpD 321314000979 kdpD Salmonella enterica subsp. enterica serovar Choleraesuis str. sensor protein KdpD YP_215710.1 808905 R 321314 CDS YP_215711.1 62179294 complement(811586..812170) 1 NC_006905.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 812170 kdpC 321314000980 kdpC Salmonella enterica subsp. enterica serovar Choleraesuis str. potassium-transporting ATPase subunit C YP_215711.1 811586 R 321314 CDS YP_215712.1 62179295 complement(812179..814227) 1 NC_006905.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 814227 kdpB 321314000981 kdpB Salmonella enterica subsp. enterica serovar Choleraesuis str. potassium-transporting ATPase subunit B YP_215712.1 812179 R 321314 CDS YP_215713.1 62179296 complement(814248..815927) 1 NC_006905.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 815927 kdpA 321314000982 kdpA Salmonella enterica subsp. enterica serovar Choleraesuis str. potassium-transporting ATPase subunit A YP_215713.1 814248 R 321314 CDS YP_215714.1 62179297 complement(815927..816016) 1 NC_006905.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit F 816016 kdpF 321314000983 kdpF Salmonella enterica subsp. enterica serovar Choleraesuis str. potassium-transporting ATPase subunit F YP_215714.1 815927 R 321314 CDS YP_215715.1 62179298 816668..818008 1 NC_006905.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 818008 phrB 321314000985 phrB Salmonella enterica subsp. enterica serovar Choleraesuis str. deoxyribodipyrimidine photolyase YP_215715.1 816668 D 321314 CDS YP_215716.1 62179299 complement(818129..819844) 1 NC_006905.1 IPR000109: TGF-beta receptor, type I/II extracellular region; IPR007114: Major facilitator superfamily; POT family transport protein 819844 ybgH 321314000986 ybgH Salmonella enterica subsp. enterica serovar Choleraesuis str. POT family transport protein YP_215716.1 818129 R 321314 CDS YP_215717.1 62179300 819939..820682 1 NC_006905.1 hydrolase-oxidase 820682 ybgI 321314000987 ybgI Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase-oxidase YP_215717.1 819939 D 321314 CDS YP_215718.1 62179301 820698..821354 1 NC_006905.1 hypothetical protein 821354 ybgJ 321314000988 ybgJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215718.1 820698 D 321314 CDS YP_215719.1 62179302 821348..822280 1 NC_006905.1 hypothetical protein 822280 ybgK 321314000989 ybgK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215719.1 821348 D 321314 CDS YP_215720.1 62179303 822225..823004 1 NC_006905.1 LamB/YcsF family protein 823004 ybgL 321314000990 ybgL Salmonella enterica subsp. enterica serovar Choleraesuis str. LamB/YcsF family protein YP_215720.1 822225 D 321314 CDS YP_215721.1 62179304 823126..823917 1 NC_006905.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 823917 nei 321314000991 nei Salmonella enterica subsp. enterica serovar Choleraesuis str. endonuclease VIII YP_215721.1 823126 D 321314 CDS YP_215722.1 62179305 complement(823972..825018) 1 NC_006905.1 IPR002155: Thiolase; hypothetical protein 825018 abrB 321314000992 abrB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215722.1 823972 R 321314 CDS YP_215723.1 62179306 complement(825155..826438) 1 NC_006905.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 826438 gltA 321314000993 gltA Salmonella enterica subsp. enterica serovar Choleraesuis str. type II citrate synthase YP_215723.1 825155 R 321314 CDS YP_215724.1 62179307 827192..827581 1 NC_006905.1 IPR000701: Succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 large membrane subunit 827581 sdhC 321314000995 sdhC Salmonella enterica subsp. enterica serovar Choleraesuis str. succinate dehydrogenase cytochrome b556 large membrane subunit YP_215724.1 827192 D 321314 CDS YP_215725.1 62179308 827922..829688 1 NC_006905.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 829688 sdhA 321314000996 sdhA Salmonella enterica subsp. enterica serovar Choleraesuis str. succinate dehydrogenase flavoprotein subunit YP_215725.1 827922 D 321314 CDS YP_215726.1 62179309 829702..830421 1 NC_006905.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 830421 sdhB 321314000997 sdhB Salmonella enterica subsp. enterica serovar Choleraesuis str. succinate dehydrogenase iron-sulfur subunit YP_215726.1 829702 D 321314 CDS YP_215727.1 62179310 830947..833748 1 NC_006905.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 833748 sucA 321314000998 sucA Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-oxoglutarate dehydrogenase E1 YP_215727.1 830947 D 321314 CDS YP_215728.1 62179311 833763..834971 1 NC_006905.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 834971 sucB 321314000999 sucB Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydrolipoamide succinyltransferase YP_215728.1 833763 D 321314 CDS YP_215729.1 62179312 835113..836279 1 NC_006905.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 836279 sucC 321314001000 sucC Salmonella enterica subsp. enterica serovar Choleraesuis str. succinyl-CoA synthetase subunit beta YP_215729.1 835113 D 321314 CDS YP_215730.1 62179313 836279..837148 1 NC_006905.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 837148 sucD 321314001001 sucD Salmonella enterica subsp. enterica serovar Choleraesuis str. succinyl-CoA synthetase subunit alpha YP_215730.1 836279 D 321314 CDS YP_215731.1 62179314 838731..840299 1 NC_006905.1 cytochrome d terminal oxidase, polypeptide subunit I 840299 cydA 321314001002 cydA Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome d terminal oxidase, polypeptide subunit I YP_215731.1 838731 D 321314 CDS YP_215732.1 62179315 840315..841454 1 NC_006905.1 cytochrome d terminal oxidase polypeptide subunit II 841454 cydB 321314001003 cydB Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome d terminal oxidase polypeptide subunit II YP_215732.1 840315 D 321314 CDS YP_215733.1 62179316 841469..841582 1 NC_006905.1 hypothetical protein 841582 ybgT 321314001004 ybgT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215733.1 841469 D 321314 CDS YP_215734.1 62179317 841582..841875 1 NC_006905.1 hypothetical protein 841875 ybgE 321314001005 ybgE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215734.1 841582 D 321314 CDS YP_215735.1 62179318 842104..842508 1 NC_006905.1 catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase 842508 ybgC 321314001006 ybgC Salmonella enterica subsp. enterica serovar Choleraesuis str. acyl-CoA thioester hydrolase YP_215735.1 842104 D 321314 CDS YP_215736.1 62179319 842505..843197 1 NC_006905.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 843197 tolQ 321314001007 tolQ Salmonella enterica subsp. enterica serovar Choleraesuis str. colicin uptake protein TolQ YP_215736.1 842505 D 321314 CDS YP_215737.1 62179320 843201..843629 1 NC_006905.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 843629 tolR 321314001008 tolR Salmonella enterica subsp. enterica serovar Choleraesuis str. colicin uptake protein TolR YP_215737.1 843201 D 321314 CDS YP_215738.1 62179321 843694..844854 1 NC_006905.1 inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 844854 tolA 321314001009 tolA Salmonella enterica subsp. enterica serovar Choleraesuis str. cell envelope integrity inner membrane protein TolA YP_215738.1 843694 D 321314 CDS YP_215739.1 62179322 844978..846270 1 NC_006905.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 846270 tolB 321314001010 tolB Salmonella enterica subsp. enterica serovar Choleraesuis str. translocation protein TolB YP_215739.1 844978 D 321314 CDS YP_215740.1 62179323 846305..846829 1 NC_006905.1 IPR006664: Bacterial outer membrane protein; IPR006665: OmpA/MotB domain; IPR006690: OmpA-like domain; peptidoglycan-associated outer membrane lipoprotein 846829 pal 321314001011 pal Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidoglycan-associated outer membrane lipoprotein YP_215740.1 846305 D 321314 CDS YP_215741.1 62179324 846839..847627 1 NC_006905.1 periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 847627 ybgF 321314001012 ybgF Salmonella enterica subsp. enterica serovar Choleraesuis str. tol-pal system protein YbgF YP_215741.1 846839 D 321314 CDS YP_215742.1 62179325 848878..849921 1 NC_006905.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 849921 nadA 321314001018 nadA Salmonella enterica subsp. enterica serovar Choleraesuis str. quinolinate synthetase YP_215742.1 848878 D 321314 CDS YP_215743.1 62179326 849946..850665 1 NC_006905.1 NMN family, nucleoside/purine/pyrimidine transporter 850665 pnuC 321314001019 pnuC Salmonella enterica subsp. enterica serovar Choleraesuis str. NMN family, nucleoside/purine/pyrimidine transporter YP_215743.1 849946 D 321314 CDS YP_215744.1 62179327 complement(850662..851600) 1 NC_006905.1 involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB 851600 ybgR 321314001020 ybgR Salmonella enterica subsp. enterica serovar Choleraesuis str. zinc transporter ZitB YP_215744.1 850662 R 321314 CDS YP_215745.1 62179328 complement(851711..852097) 1 NC_006905.1 homeobox protein 852097 ybgS 321314001021 ybgS Salmonella enterica subsp. enterica serovar Choleraesuis str. homeobox protein YP_215745.1 851711 R 321314 CDS YP_215746.2 162139602 852417..853469 1 NC_006905.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 853469 aroG 321314001022 aroG Salmonella enterica subsp. enterica serovar Choleraesuis str. phospho-2-dehydro-3-deoxyheptonate aldolase YP_215746.2 852417 D 321314 CDS YP_215747.1 62179330 complement(853563..854108) 1 NC_006905.1 fumarate hydratase class I anaerobic 854108 fumB 321314001023 fumB Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarate hydratase class I anaerobic YP_215747.1 853563 R 321314 CDS YP_215748.1 62179331 complement(854123..854968) 1 NC_006905.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 854968 fumA 321314001024 fumA Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarate hydratase YP_215748.1 854123 R 321314 CDS YP_215749.1 62179332 855098..855988 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 855988 ymbI 321314001025 ymbI Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_215749.1 855098 D 321314 CDS YP_215750.1 62179333 857196..858464 1 NC_006905.1 cation transporter 858464 yfbS 321314001027 yfbS Salmonella enterica subsp. enterica serovar Choleraesuis str. cation transporter YP_215750.1 857196 D 321314 CDS YP_215751.1 62179334 858514..858753 1 NC_006905.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 858753 oadG 321314001028 oadG Salmonella enterica subsp. enterica serovar Choleraesuis str. oxaloacetate decarboxylase subunit gamma YP_215751.1 858514 D 321314 CDS YP_215752.1 62179335 858769..860544 1 NC_006905.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 860544 oadA 321314001029 oadA Salmonella enterica subsp. enterica serovar Choleraesuis str. oxaloacetate decarboxylase YP_215752.1 858769 D 321314 CDS YP_215753.1 62179336 860557..861858 1 NC_006905.1 oxalacetate decarboxylase subunit beta 861858 oadB 321314001030 oadB Salmonella enterica subsp. enterica serovar Choleraesuis str. oxalacetate decarboxylase subunit beta YP_215753.1 860557 D 321314 CDS YP_215754.1 62179337 862028..862675 1 NC_006905.1 hypothetical protein 862675 321314001031 SC0767 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215754.1 862028 D 321314 CDS YP_215755.1 62179338 863055..864134 1 NC_006905.1 IPR000522: FecCD transport family; IPR001851: Bacterial inner-membrane translocator; ABC transporter 864134 321314001032 SC0768 Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter YP_215755.1 863055 D 321314 CDS YP_215756.1 62179339 864134..864910 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC-type cobalamin/Fe3+-siderophores transport system, ATPase 864910 fhuC 321314001033 fhuC Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC-type cobalamin/Fe3+-siderophores transport system, ATPase YP_215756.1 864134 D 321314 CDS YP_215757.1 62179340 complement(865001..865753) 1 NC_006905.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 865753 gpmA 321314001034 gpmA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglyceromutase YP_215757.1 865001 R 321314 CDS YP_215758.1 62179341 complement(865977..867017) 1 NC_006905.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 867017 galM 321314001035 galM Salmonella enterica subsp. enterica serovar Choleraesuis str. aldose 1-epimerase YP_215758.1 865977 R 321314 CDS YP_215759.1 62179342 complement(867011..868159) 1 NC_006905.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 868159 galK 321314001036 galK Salmonella enterica subsp. enterica serovar Choleraesuis str. galactokinase YP_215759.1 867011 R 321314 CDS YP_215760.1 62179343 complement(868162..869208) 1 NC_006905.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 869208 galT 321314001037 galT Salmonella enterica subsp. enterica serovar Choleraesuis str. galactose-1-phosphate uridylyltransferase YP_215760.1 868162 R 321314 CDS YP_215761.1 62179344 complement(869219..870235) 1 NC_006905.1 UDP-galactose-4-epimerase 870235 galE 321314001038 galE Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-galactose-4-epimerase YP_215761.1 869219 R 321314 CDS YP_215762.1 62179345 complement(870458..871366) 1 NC_006905.1 inner membrane protein 871366 321314001039 SC0775 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215762.1 870458 R 321314 CDS YP_215763.2 162139601 complement(871537..873012) 1 NC_006905.1 contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum transport ATP-binding protein ModF 873012 modF 321314001040 modF Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdenum transport ATP-binding protein ModF YP_215763.2 871537 R 321314 CDS YP_215764.1 62179347 complement(873080..873868) 1 NC_006905.1 represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE 873868 modE 321314001041 modE Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator ModE YP_215764.1 873080 R 321314 CDS YP_215765.1 62179348 873895..874146 1 NC_006905.1 hypothetical protein 874146 ybhT 321314001042 ybhT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215765.1 873895 D 321314 CDS YP_215766.1 62179349 874302..875075 1 NC_006905.1 with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 875075 modA 321314001043 modA Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdate transporter periplasmic protein YP_215766.1 874302 D 321314 CDS YP_215767.1 62179350 875075..875764 1 NC_006905.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 875764 modB 321314001044 modB Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdate ABC transporter permease YP_215767.1 875075 D 321314 CDS YP_215768.1 62179351 875767..876825 1 NC_006905.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 876825 modC 321314001045 modC Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdate transporter ATP-binding protein YP_215768.1 875767 D 321314 CDS YP_215769.1 62179352 complement(876826..877644) 1 NC_006905.1 YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase 877644 ybhA 321314001046 ybhA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransferase YP_215769.1 876826 R 321314 CDS YP_215770.1 62179353 877808..878803 1 NC_006905.1 catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 878803 ybhE 321314001047 ybhE Salmonella enterica subsp. enterica serovar Choleraesuis str. 6-phosphogluconolactonase YP_215770.1 877808 D 321314 CDS YP_215771.1 62179354 complement(878947..880230) 1 NC_006905.1 outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase 880230 ybhC 321314001048 ybhC Salmonella enterica subsp. enterica serovar Choleraesuis str. pectinesterase YP_215771.1 878947 R 321314 CDS YP_215772.2 162139600 880468..881691 1 NC_006905.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 881691 hutI 321314001049 hutI Salmonella enterica subsp. enterica serovar Choleraesuis str. imidazolonepropionase YP_215772.2 880468 D 321314 CDS YP_215773.1 62179356 881688..882629 1 NC_006905.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 882629 hutG 321314001050 hutG Salmonella enterica subsp. enterica serovar Choleraesuis str. formimidoylglutamase YP_215773.1 881688 D 321314 CDS YP_215774.1 62179357 882722..883399 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; histidine utilization repressor 883399 hutC 321314001051 hutC Salmonella enterica subsp. enterica serovar Choleraesuis str. histidine utilization repressor YP_215774.1 882722 D 321314 CDS YP_215775.1 62179358 883596..885281 1 NC_006905.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 885281 hutC 321314001052 hutC Salmonella enterica subsp. enterica serovar Choleraesuis str. urocanate hydratase YP_215775.1 883596 D 321314 CDS YP_215776.1 62179359 885283..886803 1 NC_006905.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 886803 hutH 321314001053 hutH Salmonella enterica subsp. enterica serovar Choleraesuis str. histidine ammonia-lyase YP_215776.1 885283 D 321314 CDS YP_215777.1 62179360 complement(886888..887364) 1 NC_006905.1 YbhB; similar to rat and human kinase inhibitory proteins; kinase inhibitor protein 887364 ybhB 321314001054 ybhB Salmonella enterica subsp. enterica serovar Choleraesuis str. kinase inhibitor protein YP_215777.1 886888 R 321314 CDS YP_215778.2 162139599 complement(887422..888711) 1 NC_006905.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 888711 bioA 321314001055 bioA Salmonella enterica subsp. enterica serovar Choleraesuis str. adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_215778.2 887422 R 321314 CDS YP_215779.1 62179362 888798..889838 1 NC_006905.1 biotin synthetase 889838 bioB 321314001056 bioB Salmonella enterica subsp. enterica serovar Choleraesuis str. biotin synthetase YP_215779.1 888798 D 321314 CDS YP_215780.1 62179363 889835..890992 1 NC_006905.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 890992 bioF 321314001057 bioF Salmonella enterica subsp. enterica serovar Choleraesuis str. 8-amino-7-oxononanoate synthase YP_215780.1 889835 D 321314 CDS YP_215781.1 62179364 890976..891731 1 NC_006905.1 methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; biotin biosynthesis protein BioC 891731 bioC 321314001058 bioC Salmonella enterica subsp. enterica serovar Choleraesuis str. biotin biosynthesis protein BioC YP_215781.1 890976 D 321314 CDS YP_215782.1 62179365 891724..892410 1 NC_006905.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 892410 bioD 321314001059 bioD Salmonella enterica subsp. enterica serovar Choleraesuis str. dithiobiotin synthetase YP_215782.1 891724 D 321314 CDS YP_215783.1 62179366 893061..895082 1 NC_006905.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 895082 uvrB 321314001060 uvrB Salmonella enterica subsp. enterica serovar Choleraesuis str. excinuclease ABC subunit B YP_215783.1 893061 D 321314 CDS YP_215784.1 62179367 895391..895564 1 NC_006905.1 hypothetical protein 895564 321314001061 SC0797 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215784.1 895391 D 321314 CDS YP_215785.1 62179368 895572..897836 1 NC_006905.1 hypothetical protein 897836 slrP 321314001062 slrP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215785.1 895572 D 321314 CDS YP_215786.1 62179369 complement(897931..898839) 1 NC_006905.1 hypothetical protein 898839 ybhK 321314001063 ybhK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215786.1 897931 R 321314 CDS YP_215787.1 62179370 899203..900225 1 NC_006905.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 900225 moaA 321314001064 moaA Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdenum cofactor biosynthesis protein A YP_215787.1 899203 D 321314 CDS YP_215788.1 62179371 900247..900759 1 NC_006905.1 IPR001453: Molybdenum cofactor biosynthesis protein; IPR008284: Molybdenum cofactor biosynthesis protein, N-terminal; molybdopterin biosynthesis, protein B 900759 moaB 321314001065 moaB Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdopterin biosynthesis, protein B YP_215788.1 900247 D 321314 CDS YP_215789.1 62179372 900762..901247 1 NC_006905.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 901247 moaC 321314001066 moaC Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdenum cofactor biosynthesis protein MoaC YP_215789.1 900762 D 321314 CDS YP_215790.1 62179373 901240..901485 1 NC_006905.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 901485 moaD 321314001067 moaD Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdopterin synthase small subunit YP_215790.1 901240 D 321314 CDS YP_215791.1 62179374 901487..901939 1 NC_006905.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 901939 moaE 321314001068 moaE Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_215791.1 901487 D 321314 CDS YP_215792.1 62179375 901987..902691 1 NC_006905.1 permease 902691 ybhL 321314001069 ybhL Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_215792.1 901987 D 321314 CDS YP_215793.1 62179376 902836..903543 1 NC_006905.1 integral membrane protein 903543 ybhM 321314001070 ybhM Salmonella enterica subsp. enterica serovar Choleraesuis str. integral membrane protein YP_215793.1 902836 D 321314 CDS YP_215794.1 62179377 903567..904175 1 NC_006905.1 inner membrane protein 904175 321314001071 SC0807 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215794.1 903567 D 321314 CDS YP_215795.1 62179378 complement(904746..905708) 1 NC_006905.1 hypothetical protein 905708 ybhN 321314001073 ybhN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215795.1 904746 R 321314 CDS YP_215796.1 62179379 complement(905708..906949) 1 NC_006905.1 IPR001736: Phospholipase D/Transphosphatidylase; cardiolipin synthase 2 906949 ybhO 321314001074 ybhO Salmonella enterica subsp. enterica serovar Choleraesuis str. cardiolipin synthase 2 YP_215796.1 905708 R 321314 CDS YP_215797.1 62179380 complement(906946..907704) 1 NC_006905.1 hypothetical protein 907704 ybhP 321314001075 ybhP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215797.1 906946 R 321314 CDS YP_215798.1 62179381 907837..908247 1 NC_006905.1 hypothetical protein 908247 ybhQ 321314001076 ybhQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215798.1 907837 D 321314 CDS YP_215799.1 62179382 complement(908209..909315) 1 NC_006905.1 IPR000412: ABC transporter family 2; ABC transporter membrane protein 909315 ybhR 321314001077 ybhR Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter membrane protein YP_215799.1 908209 R 321314 CDS YP_215800.1 62179383 complement(909431..910561) 1 NC_006905.1 ABC transporter membrane protein 910561 ybhS 321314001078 ybhS Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter membrane protein YP_215800.1 909431 R 321314 CDS YP_215801.1 62179384 complement(910554..912290) 1 NC_006905.1 IPR001553: RecA bacterial DNA recombination protein; IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; multidrug ABC transporter ATPase 912290 ybhF 321314001079 ybhF Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug ABC transporter ATPase YP_215801.1 910554 R 321314 CDS YP_215802.1 62179385 complement(912283..913278) 1 NC_006905.1 hypothetical protein 913278 ybhG 321314001080 ybhG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215802.1 912283 R 321314 CDS YP_215803.1 62179386 complement(913278..913952) 1 NC_006905.1 IPR001647: Bacterial regulatory protein TetR, HTH motif; DNA-binding transcriptional regulator 913952 ybiH 321314001081 ybiH Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator YP_215803.1 913278 R 321314 CDS YP_215804.1 62179387 914182..915543 1 NC_006905.1 this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 915543 rhlE 321314001082 rhlE Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent RNA helicase RhlE YP_215804.1 914182 D 321314 CDS YP_215805.1 62179388 915751..917895 1 NC_006905.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 917895 dinG 321314001083 dinG Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent DNA helicase DinG YP_215805.1 915751 D 321314 CDS YP_215806.1 62179389 917925..918899 1 NC_006905.1 glycosyl transferase family protein 918899 ybiB 321314001084 ybiB Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl transferase family protein YP_215806.1 917925 D 321314 CDS YP_215807.1 62179390 complement(919055..919426) 1 NC_006905.1 hypothetical protein 919426 ybiJ 321314001085 ybiJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215807.1 919055 R 321314 CDS YP_215808.1 62179391 complement(919599..919865) 1 NC_006905.1 IPR000962: Zn-finger, prokaryotic DksA/TraR C4 type; hypothetical protein 919865 ybiI 321314001086 ybiI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215808.1 919599 R 321314 CDS YP_215809.1 62179392 complement(920994..923216) 1 NC_006905.1 hypothetical protein 923216 ybiO 321314001088 ybiO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215809.1 920994 R 321314 CDS YP_215810.1 62179393 complement(923335..924057) 1 NC_006905.1 similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 924057 glnQ 321314001089 glnQ Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamine ABC transporter ATP-binding protein YP_215810.1 923335 R 321314 CDS YP_215811.1 62179394 complement(924054..924713) 1 NC_006905.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease 924713 glnP 321314001090 glnP Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamine ABC transporter permease YP_215811.1 924054 R 321314 CDS YP_215812.1 62179395 complement(924857..925603) 1 NC_006905.1 similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 925603 glnH 321314001091 glnH Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamine ABC transporter periplasmic protein YP_215812.1 924857 R 321314 CDS YP_215813.1 62179396 complement(926080..926583) 1 NC_006905.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 926583 dps 321314001092 dps Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA starvation/stationary phase protection protein Dps YP_215813.1 926080 R 321314 CDS YP_215814.1 62179397 complement(926699..926872) 1 NC_006905.1 hypothetical protein 926872 321314001093 SC0827 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215814.1 926699 R 321314 CDS YP_215815.1 62179398 complement(926886..927773) 1 NC_006905.1 threonine and homoserine efflux system 927773 ybiF 321314001094 ybiF Salmonella enterica subsp. enterica serovar Choleraesuis str. threonine and homoserine efflux system YP_215815.1 926886 R 321314 CDS YP_215816.1 62179399 928127..928642 1 NC_006905.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 928642 ompX 321314001095 ompX Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein X YP_215816.1 928127 D 321314 CDS YP_215817.1 62179400 complement(928710..930284) 1 NC_006905.1 hypothetical protein 930284 ybiP 321314001096 ybiP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215817.1 928710 R 321314 CDS YP_215818.1 62179401 complement(930549..930677) 1 NC_006905.1 hypothetical protein 930677 321314001097 SC0831 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215818.1 930549 R 321314 CDS YP_215819.1 62179402 930863..931336 1 NC_006905.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 931336 mntR 321314001098 mntR Salmonella enterica subsp. enterica serovar Choleraesuis str. manganese transport regulator MntR YP_215819.1 930863 D 321314 CDS YP_215820.1 62179403 931333..932445 1 NC_006905.1 hypothetical protein 932445 ybiR 321314001099 ybiR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215820.1 931333 D 321314 CDS YP_215821.1 62179404 complement(932489..933409) 1 NC_006905.1 hypothetical protein 933409 ybiS 321314001100 ybiS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215821.1 932489 R 321314 CDS YP_215822.1 62179405 933628..935223 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter ATPase 935223 ybiT 321314001101 ybiT Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATPase YP_215822.1 933628 D 321314 CDS YP_215823.1 62179406 complement(935345..936610) 1 NC_006905.1 hypothetical protein 936610 ybiU 321314001102 ybiU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215823.1 935345 R 321314 CDS YP_215824.1 62179407 936872..937681 1 NC_006905.1 IPR000150: Cof protein; HAD family hydrolase 937681 ybiV(1) 321314001103 ybiV(1) Salmonella enterica subsp. enterica serovar Choleraesuis str. HAD family hydrolase YP_215824.1 936872 D 321314 CDS YP_215825.1 62179408 complement(937759..940191) 1 NC_006905.1 IPR001150: Formate C-acetyltransferase glycine radical; pyruvate formate lyase 940191 pflF 321314001104 pflF Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate formate lyase YP_215825.1 937759 R 321314 CDS YP_215826.1 62179409 complement(940197..941096) 1 NC_006905.1 IPR001989: Radical-activating enzyme; pyruvate formate lyase activating enzyme 941096 pflE 321314001105 pflE Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate formate lyase activating enzyme YP_215826.1 940197 R 321314 CDS YP_215827.1 62179410 complement(941374..942123) 1 NC_006905.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 942123 moeB 321314001106 moeB Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdopterin biosynthesis protein MoeB YP_215827.1 941374 R 321314 CDS YP_215828.1 62179411 complement(942123..943358) 1 NC_006905.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA 943358 moeA 321314001107 moeA Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdopterin biosynthesis protein MoeA YP_215828.1 942123 R 321314 CDS YP_215829.1 62179412 943562..944503 1 NC_006905.1 L-asparaginase 944503 ybiK 321314001108 ybiK Salmonella enterica subsp. enterica serovar Choleraesuis str. L-asparaginase YP_215829.1 943562 D 321314 CDS YP_215830.1 62179413 944415..946385 1 NC_006905.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 946385 yliA 321314001109 yliA Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione transporter ATP-binding protein YP_215830.1 944415 D 321314 CDS YP_215831.1 62179414 946418..947956 1 NC_006905.1 IPR000914: Bacterial extracellular solute-binding protein, family 5; ABC transporter substrate-binding protein 947956 yliB 321314001110 yliB Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter substrate-binding protein YP_215831.1 946418 D 321314 CDS YP_215832.1 62179415 948083..948937 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC transporter substrate-binding protein 948937 yliC 321314001111 yliC Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter substrate-binding protein YP_215832.1 948083 D 321314 CDS YP_215833.1 62179416 948940..949851 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC transporter inner membrane component 949851 yliD 321314001112 yliD Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter inner membrane component YP_215833.1 948940 D 321314 CDS YP_215834.1 62179417 complement(949942..951267) 1 NC_006905.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 951267 rimO 321314001113 rimO Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosomal protein S12 methylthiotransferase YP_215834.1 949942 R 321314 CDS YP_215835.1 62179418 953021..953875 1 NC_006905.1 IPR000049: Electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 953875 etfB 321314001115 etfB Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transfer flavoprotein subunit beta YP_215835.1 953021 D 321314 CDS YP_215836.1 62179419 953886..954833 1 NC_006905.1 IPR001308: Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein alpha subunit 954833 etfA 321314001116 etfA Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transfer flavoprotein alpha subunit YP_215836.1 953886 D 321314 CDS YP_215837.1 62179420 954866..955078 1 NC_006905.1 hypothetical protein 955078 321314001117 SC0850 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215837.1 954866 D 321314 CDS YP_215838.1 62179421 955128..956291 1 NC_006905.1 IPR006089: Acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 956291 acdC 321314001118 acdC Salmonella enterica subsp. enterica serovar Choleraesuis str. acyl-CoA dehydrogenase YP_215838.1 955128 D 321314 CDS YP_215839.1 62179422 956740..958425 1 NC_006905.1 IPR000205: NAD-binding site; IPR003042: Aromatic-ring hydroxylase; dehydrogenase 958425 etfD 321314001119 etfD Salmonella enterica subsp. enterica serovar Choleraesuis str. dehydrogenase YP_215839.1 956740 D 321314 CDS YP_215840.1 62179423 complement(958616..959824) 1 NC_006905.1 transposase of Tn10 959824 TnpR 321314001120 TnpR Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase of Tn10 YP_215840.1 958616 R 321314 CDS YP_215841.1 62179424 complement(959928..960575) 1 NC_006905.1 LysR family transcriptional regulator 960575 ywfK 321314001121 ywfK Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_215841.1 959928 R 321314 CDS YP_215842.1 62179425 961697..962377 1 NC_006905.1 IPR003220: Insertion element protein; dehydrogenase 962377 yliI 321314001123 yliI Salmonella enterica subsp. enterica serovar Choleraesuis str. dehydrogenase YP_215842.1 961697 D 321314 CDS YP_215843.1 62179426 complement(962374..963000) 1 NC_006905.1 IPR004045: Glutathione S-transferase, N-terminal; IPR004046: Glutathione S-transferase, C-terminal; glutathione S-transferase 963000 yliJ 321314001124 yliJ Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione S-transferase YP_215843.1 962374 R 321314 CDS YP_215844.1 62179427 963244..964446 1 NC_006905.1 penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 964446 dacC 321314001125 dacC Salmonella enterica subsp. enterica serovar Choleraesuis str. D-alanyl-D-alanine carboxypeptidase YP_215844.1 963244 D 321314 CDS YP_215845.1 62179428 complement(964491..965249) 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; DNA-binding transcriptional repressor DeoR 965249 deoR 321314001126 deoR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional repressor DeoR YP_215845.1 964491 R 321314 CDS YP_215846.1 62179429 complement(965321..965995) 1 NC_006905.1 IPR000326: PA-phosphatase related phosphoesterase; undecaprenyl pyrophosphate phosphatase 965995 ybjG 321314001127 ybjG Salmonella enterica subsp. enterica serovar Choleraesuis str. undecaprenyl pyrophosphate phosphatase YP_215846.1 965321 R 321314 CDS YP_215847.1 62179430 966242..967474 1 NC_006905.1 IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; multidrug translocase 967474 mdfA 321314001128 mdfA Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug translocase YP_215847.1 966242 D 321314 CDS YP_215848.1 62179431 complement(967528..968343) 1 NC_006905.1 IPR000150: Cof protein; hypothetical protein 968343 ybjI 321314001129 ybjI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215848.1 967528 R 321314 CDS YP_215849.1 62179432 complement(968340..969551) 1 NC_006905.1 IPR007114: Major facilitator superfamily; hypothetical protein 969551 ybjJ 321314001130 ybjJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215849.1 968340 R 321314 CDS YP_215850.1 62179433 969719..970339 1 NC_006905.1 IPR001647: Bacterial regulatory protein TetR, HTH motif; paral regulator 970339 ybjK 321314001131 ybjK Salmonella enterica subsp. enterica serovar Choleraesuis str. paral regulator YP_215850.1 969719 D 321314 CDS YP_215851.1 62179434 complement(970456..972141) 1 NC_006905.1 hypothetical protein 972141 ybjL 321314001132 ybjL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215851.1 970456 R 321314 CDS YP_215852.1 62179435 972412..972789 1 NC_006905.1 hypothetical protein 972789 ybjM 321314001133 ybjM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215852.1 972412 D 321314 CDS YP_215853.1 62179436 complement(972821..973084) 1 NC_006905.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 973084 grxA 321314001134 grxA Salmonella enterica subsp. enterica serovar Choleraesuis str. glutaredoxin YP_215853.1 972821 R 321314 CDS YP_215854.1 62179437 973254..973544 1 NC_006905.1 YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 973544 ybjC 321314001135 ybjC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215854.1 973254 D 321314 CDS YP_215855.1 62179438 974308..975210 1 NC_006905.1 responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 975210 rimK 321314001137 rimK Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosomal protein S6 modification protein YP_215855.1 974308 D 321314 CDS YP_215856.1 62179439 975307..975783 1 NC_006905.1 hypothetical protein 975783 ybjN 321314001138 ybjN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215856.1 975307 D 321314 CDS YP_215857.1 62179440 976132..977244 1 NC_006905.1 IPR001188: Bacterial periplasmic spermidine/putrescine-binding protein; putrescine ABC transporter periplasmic-binding protein 977244 potF 321314001139 potF Salmonella enterica subsp. enterica serovar Choleraesuis str. putrescine ABC transporter periplasmic-binding protein YP_215857.1 976132 D 321314 CDS YP_215858.1 62179441 977332..978465 1 NC_006905.1 part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 978465 potG 321314001140 potG Salmonella enterica subsp. enterica serovar Choleraesuis str. putrescine ABC transporter ATP-binding protein YP_215858.1 977332 D 321314 CDS YP_215859.1 62179442 978475..979428 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR000834: Zinc carboxypeptidase A metalloprotease (M14); putrescine ABC transporter membrane protein 979428 potH 321314001141 potH Salmonella enterica subsp. enterica serovar Choleraesuis str. putrescine ABC transporter membrane protein YP_215859.1 978475 D 321314 CDS YP_215860.1 62179443 979425..980270 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; putrescine ABC transporter membrane protein 980270 potI 321314001142 potI Salmonella enterica subsp. enterica serovar Choleraesuis str. putrescine ABC transporter membrane protein YP_215860.1 979425 D 321314 CDS YP_215861.1 62179444 980254..980817 1 NC_006905.1 hypothetical protein 980817 ybjO 321314001143 ybjO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215861.1 980254 D 321314 CDS YP_215862.1 62179445 980860..981990 1 NC_006905.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 981990 rumB 321314001144 rumB Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA methyluridine methyltransferase YP_215862.1 980860 D 321314 CDS YP_215863.1 62179446 982273..983616 1 NC_006905.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 983616 ulaA 321314001145 ulaA Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system ascorbate-specific transporter subunit IIC YP_215863.1 982273 D 321314 CDS YP_215864.1 62179447 983646..983966 1 NC_006905.1 similar to SgaT from Vibrio; inner membrane protein 983966 321314001146 SC0877 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215864.1 983646 D 321314 CDS YP_215865.1 62179448 983976..985463 1 NC_006905.1 sulfatase 985463 321314001147 SC0878 Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfatase YP_215865.1 983976 D 321314 CDS YP_215866.1 62179449 complement(985681..986412) 1 NC_006905.1 IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; arginine ABC transporter ATP-binding protein 986412 artJ 321314001148 artJ Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine ABC transporter ATP-binding protein YP_215866.1 985681 R 321314 CDS YP_215867.1 62179450 complement(986648..987316) 1 NC_006905.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 987316 artM 321314001149 artM Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine transporter permease subunit ArtM YP_215867.1 986648 R 321314 CDS YP_215868.1 62179451 complement(987316..988032) 1 NC_006905.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 988032 artQ 321314001150 artQ Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine transporter permease subunit ArtQ YP_215868.1 987316 R 321314 CDS YP_215869.1 62179452 complement(988039..988839) 1 NC_006905.1 IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; arginine ABC transporter ATP-binding protein 988839 artI 321314001151 artI Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine ABC transporter ATP-binding protein YP_215869.1 988039 R 321314 CDS YP_215870.1 62179453 complement(988788..989516) 1 NC_006905.1 With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 989516 artP 321314001152 artP Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine transporter ATP-binding subunit YP_215870.1 988788 R 321314 CDS YP_215871.1 62179454 complement(989746..990261) 1 NC_006905.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein 990261 ybjP 321314001153 ybjP Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein YP_215871.1 989746 R 321314 CDS YP_215872.1 62179455 990389..990712 1 NC_006905.1 orfB; hypothetical protein 990712 321314001154 SC0885 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215872.1 990389 D 321314 CDS YP_215873.1 62179456 990709..991539 1 NC_006905.1 aminidase 991539 ybjR 321314001155 ybjR Salmonella enterica subsp. enterica serovar Choleraesuis str. aminidase YP_215873.1 990709 D 321314 CDS YP_215874.1 62179457 complement(991536..992549) 1 NC_006905.1 nucleoside-diphosphate-sugar epimerase 992549 ybjS 321314001156 ybjS Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleoside-diphosphate-sugar epimerase YP_215874.1 991536 R 321314 CDS YP_215875.1 62179458 complement(992645..994078) 1 NC_006905.1 hypothetical protein 994078 ybjT 321314001157 ybjT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215875.1 992645 R 321314 CDS YP_215876.1 62179459 complement(994089..995090) 1 NC_006905.1 low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase 995090 ltaA 321314001158 ltaA Salmonella enterica subsp. enterica serovar Choleraesuis str. L-threonine aldolase YP_215876.1 994089 R 321314 CDS YP_215877.1 62179460 complement(995129..996847) 1 NC_006905.1 catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 996847 poxB 321314001159 poxB Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate dehydrogenase YP_215877.1 995129 R 321314 CDS YP_215878.1 62179461 complement(997005..997976) 1 NC_006905.1 IPR000951: Phthalate dioxygenase reductase; IPR001041: Ferredoxin; IPR001221: Phenol hydroxylase reductase;IPR001433: Oxidoreductase FAD/NAD(P)-binding;IPR008333: Oxidoreductase FAD-binding region; HCP oxidoreductase 997976 hcr 321314001160 hcr Salmonella enterica subsp. enterica serovar Choleraesuis str. HCP oxidoreductase YP_215878.1 997005 R 321314 CDS YP_215879.1 62179462 complement(997985..999637) 1 NC_006905.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 999637 hcp 321314001161 hcp Salmonella enterica subsp. enterica serovar Choleraesuis str. hydroxylamine reductase YP_215879.1 997985 R 321314 CDS YP_215880.1 62179463 complement(999781..1000680) 1 NC_006905.1 IPR005642: Membrane protein of unknown function DUF340; hypothetical protein 1000680 ybjE 321314001162 ybjE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215880.1 999781 R 321314 CDS YP_215881.1 62179464 1000882..1002540 1 NC_006905.1 hypothetical protein 1002540 ybjD 321314001163 ybjD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215881.1 1000882 D 321314 CDS YP_215882.1 62179465 complement(1002537..1003505) 1 NC_006905.1 virK 1003505 ybjX 321314001164 ybjX Salmonella enterica subsp. enterica serovar Choleraesuis str. virK YP_215882.1 1002537 R 321314 CDS YP_215883.1 62179466 1003633..1004751 1 NC_006905.1 confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 1004751 ybjY 321314001165 ybjY Salmonella enterica subsp. enterica serovar Choleraesuis str. macrolide transporter subunit MacA YP_215883.1 1003633 D 321314 CDS YP_215884.1 62179467 1004748..1006694 1 NC_006905.1 with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 1006694 ybjZ 321314001166 ybjZ Salmonella enterica subsp. enterica serovar Choleraesuis str. macrolide transporter ATP-binding /permease YP_215884.1 1004748 D 321314 CDS YP_215885.1 62179468 complement(1006824..1007045) 1 NC_006905.1 but not cold shock induced; IPR002059: Cold-shock DNA-binding domain; CspA-like protein 1007045 cspD 321314001167 cspD Salmonella enterica subsp. enterica serovar Choleraesuis str. CspA-like protein YP_215885.1 1006824 R 321314 CDS YP_215886.1 62179469 1007369..1007689 1 NC_006905.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1007689 clpS 321314001168 clpS Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent Clp protease adaptor protein ClpS YP_215886.1 1007369 D 321314 CDS YP_215887.1 62179470 1007720..1009996 1 NC_006905.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1009996 clpA 321314001169 clpA Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent Clp protease ATP-binding subunit YP_215887.1 1007720 D 321314 CDS YP_215888.1 62179471 complement(1010209..1010406) 1 NC_006905.1 hypothetical protein 1010406 321314001170 SC0901 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215888.1 1010209 R 321314 CDS YP_215889.1 62179472 complement(1010568..1010945) 1 NC_006905.1 integrase remnant 1010945 321314001171 SC0902 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase remnant YP_215889.1 1010568 R 321314 CDS YP_215890.1 62179473 complement(1011072..1011422) 1 NC_006905.1 hypothetical protein 1011422 321314001172 SC0903 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215890.1 1011072 R 321314 CDS YP_215891.1 62179474 complement(1011610..1012287) 1 NC_006905.1 slsA in STM 1012287 ycaC 321314001174 ycaC Salmonella enterica subsp. enterica serovar Choleraesuis str. slsA in STM YP_215891.1 1011610 R 321314 CDS YP_215892.1 62179475 complement(1012307..1013167) 1 NC_006905.1 hypothetical protein 1013167 321314001175 SC0905 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215892.1 1012307 R 321314 CDS YP_215893.1 62179476 1013276..1014187 1 NC_006905.1 LysR family transcriptional regulator 1014187 yafC 321314001176 yafC Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_215893.1 1013276 D 321314 CDS YP_215894.1 62179477 complement(1014278..1014496) 1 NC_006905.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1014496 infA 321314001177 infA Salmonella enterica subsp. enterica serovar Choleraesuis str. translation initiation factor IF-1 YP_215894.1 1014278 R 321314 CDS YP_215895.1 62179478 complement(1014424..1014807) 1 NC_006905.1 inner membrane protein 1014807 321314001178 SC0908 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_215895.1 1014424 R 321314 CDS YP_215896.1 62179479 complement(1014808..1015512) 1 NC_006905.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1015512 aat 321314001179 aat Salmonella enterica subsp. enterica serovar Choleraesuis str. leucyl/phenylalanyl-tRNA--protein transferase YP_215896.1 1014808 R 321314 CDS YP_215897.1 62179480 complement(1015557..1017278) 1 NC_006905.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 1017278 cydC 321314001180 cydC Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_215897.1 1015557 R 321314 CDS YP_215898.1 62179481 complement(1017279..1019045) 1 NC_006905.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 1019045 cydD 321314001181 cydD Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_215898.1 1017279 R 321314 CDS YP_215899.1 62179482 complement(1019159..1020127) 1 NC_006905.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase 1020127 trxB 321314001182 trxB Salmonella enterica subsp. enterica serovar Choleraesuis str. thioredoxin reductase YP_215899.1 1019159 R 321314 CDS YP_215900.1 62179483 1020673..1021167 1 NC_006905.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1021167 lrp 321314001183 lrp Salmonella enterica subsp. enterica serovar Choleraesuis str. leucine-responsive transcriptional regulator YP_215900.1 1020673 D 321314 CDS YP_215901.1 62179484 1021245..1025378 1 NC_006905.1 DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 1025378 ftsK 321314001184 ftsK Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA translocase FtsK YP_215901.1 1021245 D 321314 CDS YP_215902.1 62179485 1025518..1026132 1 NC_006905.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1026132 lolA 321314001185 lolA Salmonella enterica subsp. enterica serovar Choleraesuis str. outer-membrane lipoprotein carrier protein YP_215902.1 1025518 D 321314 CDS YP_215903.1 62179486 1026142..1027485 1 NC_006905.1 IPR000862: Replication factor C conserved domain; recombination factor protein RarA 1027485 ycaJ 321314001186 ycaJ Salmonella enterica subsp. enterica serovar Choleraesuis str. recombination factor protein RarA YP_215903.1 1026142 D 321314 CDS YP_215904.1 62179487 1027744..1029036 1 NC_006905.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1029036 serS 321314001187 serS Salmonella enterica subsp. enterica serovar Choleraesuis str. seryl-tRNA synthetase YP_215904.1 1027744 D 321314 CDS YP_215905.1 62179488 1029273..1031717 1 NC_006905.1 IPR006311: Twin-arginine translocation pathway signal; IPR006655: Prokaryotic molybdopterin oxidoreductase; IPR006656: Molybdopterin oxidoreductase;IPR006657: Molydopterin dinucleotide binding domain;IPR006963: Molybdopterin oxidoreductase Fe4S4 domain; anaerobic dimethyl sulfoxide reductase subunit A 1031717 dmsA 321314001188 dmsA Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic dimethyl sulfoxide reductase subunit A YP_215905.1 1029273 D 321314 CDS YP_215906.1 62179489 1031729..1032346 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; anaerobic dimethyl sulfoxide reductase subunit B 1032346 dmsB 321314001189 dmsB Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic dimethyl sulfoxide reductase subunit B YP_215906.1 1031729 D 321314 CDS YP_215907.1 62179490 1032348..1033211 1 NC_006905.1 anaerobic dimethyl sulfoxide reductase subunit C 1033211 321314001190 SC0920 Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic dimethyl sulfoxide reductase subunit C YP_215907.1 1032348 D 321314 CDS YP_215908.1 62179491 1033241..1033348 1 NC_006905.1 hypothetical protein 1033348 321314001191 SC0921 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215908.1 1033241 D 321314 CDS YP_215909.1 62179492 1033561..1034709 1 NC_006905.1 IPR000276: Rhodopsin-like GPCR superfamily; IPR001064: Beta and gamma crystallin; IPR007114: Major facilitator superfamily; MFS family transporter protein 1034709 ycaD 321314001192 ycaD Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter protein YP_215909.1 1033561 D 321314 CDS YP_215910.1 62179493 1034927..1036348 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; amino acid APC transporter 1036348 ycaM 321314001193 ycaM Salmonella enterica subsp. enterica serovar Choleraesuis str. amino acid APC transporter YP_215910.1 1034927 D 321314 CDS YP_215911.2 162139598 complement(1036641..1037438) 1 NC_006905.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1037438 pflA 321314001194 pflA Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate formate lyase-activating enzyme 1 YP_215911.2 1036641 R 321314 CDS YP_215912.1 62179495 1037566..1037730 1 NC_006905.1 hypothetical protein 1037730 321314001195 SC0925 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215912.1 1037566 D 321314 CDS YP_215913.1 62179496 1038014..1038973 1 NC_006905.1 secreted protein SopD-like protein 1038973 sopD 321314001196 sopD Salmonella enterica subsp. enterica serovar Choleraesuis str. secreted protein SopD-like protein YP_215913.1 1038014 D 321314 CDS YP_215914.1 62179497 complement(1039049..1041331) 1 NC_006905.1 IPR001150: Formate C-acetyltransferase glycine radical; pyruvate formate lyase I 1041331 pflB 321314001197 pflB Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate formate lyase I YP_215914.1 1039049 R 321314 CDS YP_215915.1 62179498 complement(1041391..1042368) 1 NC_006905.1 IPR000292: Formate/nitrite transporter; formate transporter 1042368 focA 321314001198 focA Salmonella enterica subsp. enterica serovar Choleraesuis str. formate transporter YP_215915.1 1041391 R 321314 CDS YP_215916.1 62179499 complement(1042653..1044488) 1 NC_006905.1 hypothetical protein 1044488 ycaO 321314001199 ycaO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215916.1 1042653 R 321314 CDS YP_215917.1 62179500 1044550..1045242 1 NC_006905.1 hypothetical protein 1045242 ycaP 321314001200 ycaP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215917.1 1044550 D 321314 CDS YP_215918.1 62179501 1045428..1046516 1 NC_006905.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1046516 serC 321314001201 serC Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoserine aminotransferase YP_215918.1 1045428 D 321314 CDS YP_215919.1 62179502 1046582..1047865 1 NC_006905.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1047865 aroA 321314001202 aroA Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-phosphoshikimate 1-carboxyvinyltransferase YP_215919.1 1046582 D 321314 CDS YP_215920.1 62179503 1048008..1048769 1 NC_006905.1 IPR006025: Neutral zinc metallopeptidases, zinc-binding site; Zn-dependent protease with chaperone function 1048769 ycaL 321314001203 ycaL Salmonella enterica subsp. enterica serovar Choleraesuis str. Zn-dependent protease with chaperone function YP_215920.1 1048008 D 321314 CDS YP_215921.1 62179504 1048942..1049625 1 NC_006905.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1049625 cmk 321314001204 cmk Salmonella enterica subsp. enterica serovar Choleraesuis str. cytidylate kinase YP_215921.1 1048942 D 321314 CDS YP_215922.1 62179505 1049737..1051410 1 NC_006905.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1051410 rpsA 321314001205 rpsA Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S1 YP_215922.1 1049737 D 321314 CDS YP_215923.1 62179506 1051566..1051850 1 NC_006905.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1051850 ihfB 321314001206 ihfB Salmonella enterica subsp. enterica serovar Choleraesuis str. integration host factor subunit beta YP_215923.1 1051566 D 321314 CDS YP_215924.1 62179507 1051963..1052364 1 NC_006905.1 hypothetical protein 1052364 321314001207 SC0937 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215924.1 1051963 D 321314 CDS YP_215925.1 62179508 1052535..1053218 1 NC_006905.1 integrase 1053218 yis 321314001208 yis Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_215925.1 1052535 D 321314 CDS YP_215926.1 62179509 1053493..1053822 1 NC_006905.1 hypothetical protein 1053822 321314001209 SC0939 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215926.1 1053493 D 321314 CDS YP_215927.1 62179510 1054751..1054951 1 NC_006905.1 hypothetical protein 1054951 321314001210 SC0940 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215927.1 1054751 D 321314 CDS YP_215928.1 62179511 1055697..1057445 1 NC_006905.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding protein/permease 1057445 msbA 321314001211 msbA Salmonella enterica subsp. enterica serovar Choleraesuis str. lipid transporter ATP-binding protein/permease YP_215928.1 1055697 D 321314 CDS YP_215929.1 62179512 1057442..1058419 1 NC_006905.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1058419 lpxK 321314001212 lpxK Salmonella enterica subsp. enterica serovar Choleraesuis str. tetraacyldisaccharide 4'-kinase YP_215929.1 1057442 D 321314 CDS YP_215930.1 62179513 1058463..1059695 1 NC_006905.1 hypothetical protein 1059695 ycaQ 321314001213 ycaQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215930.1 1058463 D 321314 CDS YP_215931.1 62179514 1059702..1059929 1 NC_006905.1 hypothetical protein 1059929 ycaR 321314001214 ycaR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215931.1 1059702 D 321314 CDS YP_215932.1 62179515 1059926..1060672 1 NC_006905.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1060672 kdsB 321314001215 kdsB Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-deoxy-manno-octulosonate cytidylyltransferase YP_215932.1 1059926 D 321314 CDS YP_215934.1 62179517 1060883..1061776 1 NC_006905.1 hypothetical protein 1061776 ycbJ 321314001216 ycbJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215934.1 1060883 D 321314 CDS YP_215935.1 62179518 complement(1061756..1062532) 1 NC_006905.1 hypothetical protein 1062532 ycbC 321314001217 ycbC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215935.1 1061756 R 321314 CDS YP_215936.1 62179519 1062668..1063471 1 NC_006905.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA 1063471 smtA 321314001218 smtA Salmonella enterica subsp. enterica serovar Choleraesuis str. metallothionein SmtA YP_215936.1 1062668 D 321314 CDS YP_215937.1 62179520 1063464..1064786 1 NC_006905.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1064786 mukF 321314001219 mukF Salmonella enterica subsp. enterica serovar Choleraesuis str. condesin subunit F YP_215937.1 1063464 D 321314 CDS YP_215938.1 62179521 1064740..1065471 1 NC_006905.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1065471 mukE 321314001220 mukE Salmonella enterica subsp. enterica serovar Choleraesuis str. condesin subunit E YP_215938.1 1064740 D 321314 CDS YP_215939.1 62179522 1070284..1072131 1 NC_006905.1 IPR001064: Beta and gamma crystallin; IPR002052: N-6 Adenine-specific DNA methylase; hypothetical protein 1072131 ycbB 321314001222 ycbB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215939.1 1070284 D 321314 CDS YP_215940.1 62179523 1072391..1072939 1 NC_006905.1 hypothetical protein 1072939 ycbK 321314001223 ycbK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215940.1 1072391 D 321314 CDS YP_215941.1 62179524 1072967..1073614 1 NC_006905.1 hypothetical protein 1073614 ycbL 321314001224 ycbL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215941.1 1072967 D 321314 CDS YP_215942.1 62179525 complement(1073676..1074866) 1 NC_006905.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1074866 aspC 321314001225 aspC Salmonella enterica subsp. enterica serovar Choleraesuis str. aromatic amino acid aminotransferase YP_215942.1 1073676 R 321314 CDS YP_215943.1 62179526 complement(1075051..1076148) 1 NC_006905.1 IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; outer membrane protein 1a (IA;b;f), porin 1076148 ompF 321314001226 ompF Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein 1a (IA;b;f), porin YP_215943.1 1075051 R 321314 CDS YP_215944.1 62179527 complement(1076755..1078155) 1 NC_006905.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1078155 asnC 321314001227 asnC Salmonella enterica subsp. enterica serovar Choleraesuis str. asparaginyl-tRNA synthetase YP_215944.1 1076755 R 321314 CDS YP_215945.1 62179528 complement(1078356..1078817) 1 NC_006905.1 IPR000485: Bacterial regulatory proteins, AsnC/Lrp; leucine response regulator 1078817 321314001228 SC0958 Salmonella enterica subsp. enterica serovar Choleraesuis str. leucine response regulator YP_215945.1 1078356 R 321314 CDS YP_215946.1 62179529 1079231..1080331 1 NC_006905.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1080331 dpaL 321314001229 dpaL Salmonella enterica subsp. enterica serovar Choleraesuis str. diaminopropionate ammonia-lyase YP_215946.1 1079231 D 321314 CDS YP_215947.1 62179530 1080423..1080581 1 NC_006905.1 hypothetical protein 1080581 321314001230 SC0960 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215947.1 1080423 D 321314 CDS YP_215948.1 62179531 1080595..1082031 1 NC_006905.1 IPR001463: Sodium:alanine symporter; IPR002293: Amino acid/polyamine transporter family I; Lrp family transcriptional regulator 1082031 lrp 321314001231 lrp Salmonella enterica subsp. enterica serovar Choleraesuis str. Lrp family transcriptional regulator YP_215948.1 1080595 D 321314 CDS YP_215949.1 62179532 complement(1082109..1083359) 1 NC_006905.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1083359 pncB 321314001232 pncB Salmonella enterica subsp. enterica serovar Choleraesuis str. nicotinate phosphoribosyltransferase YP_215949.1 1082109 R 321314 CDS YP_215950.1 62179533 complement(1083517..1084794) 1 NC_006905.1 Gifsy-2 prophage integrase 1084794 intQ 321314001233 intQ Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage integrase YP_215950.1 1083517 R 321314 CDS YP_215952.1 62179535 complement(1085411..1086568) 1 NC_006905.1 IPR004590: RecT protein; Gifsy-2 prophage RecT 1086568 recT 321314001234 recT Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage RecT YP_215952.1 1085411 R 321314 CDS YP_215953.1 62179536 complement(1087793..1088206) 1 NC_006905.1 exodeoxyribonuclease VIII 1088206 321314001236 SC0966 Salmonella enterica subsp. enterica serovar Choleraesuis str. exodeoxyribonuclease VIII YP_215953.1 1087793 R 321314 CDS YP_215954.1 62179537 complement(1089583..1089933) 1 NC_006905.1 Gifsy-1 prophage protein 1089933 321314001237 SC0967 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage protein YP_215954.1 1089583 R 321314 CDS YP_215955.1 62179538 complement(1089955..1090113) 1 NC_006905.1 Gifsy-1 prophage protein 1090113 321314001238 SC0968 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage protein YP_215955.1 1089955 R 321314 CDS YP_215956.1 62179539 complement(1090106..1090222) 1 NC_006905.1 Gifsy-1 prophage protein 1090222 321314001239 SC0969 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage protein YP_215956.1 1090106 R 321314 CDS YP_215957.1 62179540 1090512..1090718 1 NC_006905.1 hypothetical protein 1090718 321314001240 SC0970 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215957.1 1090512 D 321314 CDS YP_215958.1 62179541 complement(1090751..1091683) 1 NC_006905.1 hypothetical protein 1091683 321314001241 SC0971 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215958.1 1090751 R 321314 CDS YP_215959.1 62179542 complement(1091680..1092153) 1 NC_006905.1 hypothetical protein 1092153 321314001242 SC0972 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215959.1 1091680 R 321314 CDS YP_215960.1 62179543 complement(1092304..1092771) 1 NC_006905.1 regulator 1092771 321314001243 SC0973 Salmonella enterica subsp. enterica serovar Choleraesuis str. regulator YP_215960.1 1092304 R 321314 CDS YP_215961.1 62179544 1092942..1093352 1 NC_006905.1 similar to cI protein in phage N; Gifsy-1 prophage cI 1093352 321314001244 SC0974 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage cI YP_215961.1 1092942 D 321314 CDS YP_215962.1 62179545 1093444..1094280 1 NC_006905.1 replication protein O of prophage CP-933X 1094280 321314001245 SC0975 Salmonella enterica subsp. enterica serovar Choleraesuis str. replication protein O of prophage CP-933X YP_215962.1 1093444 D 321314 CDS YP_215963.1 62179546 1094277..1094972 1 NC_006905.1 replication protein O of prophage CP-933X 1094972 321314001246 SC0976 Salmonella enterica subsp. enterica serovar Choleraesuis str. replication protein O of prophage CP-933X YP_215963.1 1094277 D 321314 CDS YP_215964.1 62179547 1094986..1095783 1 NC_006905.1 hypothetical protein 1095783 321314001247 SC0977 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215964.1 1094986 D 321314 CDS YP_215965.1 62179548 1096303..1096542 1 NC_006905.1 Gifsy-1 prophage DinI 1096542 dinI 321314001248 dinI Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage DinI YP_215965.1 1096303 D 321314 CDS YP_215966.1 62179549 1096877..1097479 1 NC_006905.1 Gifsy-2 prophage protein 1097479 321314001249 SC0979 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage protein YP_215966.1 1096877 D 321314 CDS YP_215967.1 62179550 1097485..1097685 1 NC_006905.1 hypothetical protein 1097685 321314001250 SC0980 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215967.1 1097485 D 321314 CDS YP_215968.1 62179551 1097688..1098299 1 NC_006905.1 Gifsy-1 prophage protein 1098299 ninG 321314001251 ninG Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage protein YP_215968.1 1097688 D 321314 CDS YP_215969.1 62179552 1098296..1098436 1 NC_006905.1 Gifsy-1 prophage protein 1098436 321314001252 SC0982 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage protein YP_215969.1 1098296 D 321314 CDS YP_215970.1 62179553 1098433..1099113 1 NC_006905.1 similar to antiterminator Q; Gifsy-1 prophage RegQ 1099113 regQ 321314001253 regQ Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage RegQ YP_215970.1 1098433 D 321314 CDS YP_215971.1 62179554 complement(1099234..1099920) 1 NC_006905.1 IPR006025: Neutral zinc metallopeptidases, zinc-binding site; Gifsy-2 prophage GtgA 1099920 gtgA 321314001254 gtgA Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage GtgA YP_215971.1 1099234 R 321314 CDS YP_215972.1 62179555 1100190..1100525 1 NC_006905.1 Gifsy-1 prophage protein 1100525 321314001255 SC0985 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage protein YP_215972.1 1100190 D 321314 CDS YP_215973.1 62179556 1100512..1100961 1 NC_006905.1 Gifsy-2 prophage lysozyme 1100961 lycV 321314001256 lycV Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage lysozyme YP_215973.1 1100512 D 321314 CDS YP_215974.1 62179557 1100979..1101458 1 NC_006905.1 Gifsy-2 prophage RzpD 1101458 rzpD 321314001257 rzpD Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage RzpD YP_215974.1 1100979 D 321314 CDS YP_215975.1 62179558 1101615..1102040 1 NC_006905.1 Gifsy-2 prophage protein 1102040 321314001258 SC0988 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage protein YP_215975.1 1101615 D 321314 CDS YP_215977.1 62179560 1104132..1104338 1 NC_006905.1 hypothetical protein 1104338 321314001260 SC0990 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215977.1 1104132 D 321314 CDS YP_215978.1 62179561 1104335..1105864 1 NC_006905.1 Gifsy-2 prophage VmtV 1105864 vmtV 321314001261 vmtV Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage VmtV YP_215978.1 1104335 D 321314 CDS YP_215979.1 62179562 1105910..1106308 1 NC_006905.1 Gifsy-2 prophage minor tail protein 1106308 321314001262 SC0992 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage minor tail protein YP_215979.1 1105910 D 321314 CDS YP_215980.1 62179563 1106383..1106634 1 NC_006905.1 Gifsy-2 prophage minor tail protein 1106634 321314001263 SC0993 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage minor tail protein YP_215980.1 1106383 D 321314 CDS YP_215981.1 62179564 1106648..1109701 1 NC_006905.1 Gifsy-2 prophage minor tail protein 1109701 321314001264 SC0994 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage minor tail protein YP_215981.1 1106648 D 321314 CDS YP_215982.1 62179565 1109698..1110030 1 NC_006905.1 Gifsy-2 prophage minor tail protein 1110030 vmtM 321314001265 vmtM Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage minor tail protein YP_215982.1 1109698 D 321314 CDS YP_215983.1 62179566 1110129..1110626 1 NC_006905.1 IPR000758: Virulence-related outer membrane protein; Gifsy-2 prophage attachment and invasion protein-like protein 1110626 ail 321314001266 ail Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage attachment and invasion protein-like protein YP_215983.1 1110129 D 321314 CDS YP_215984.1 62179567 complement(1110743..1111276) 1 NC_006905.1 IPR001424: Copper/Zinc superoxide dismutase; Gifsy-2 prophage superoxide dismutase(Cu-Zn) 1111276 sodC 321314001267 sodC Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage superoxide dismutase(Cu-Zn) YP_215984.1 1110743 R 321314 CDS YP_215985.1 62179568 1111366..1112061 1 NC_006905.1 Gifsy-2 prophage minor tail protein 1112061 vmtL 321314001268 vmtL Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage minor tail protein YP_215985.1 1111366 D 321314 CDS YP_215986.1 62179569 1112071..1112808 1 NC_006905.1 Gifsy-2 prophage tail assembly protein 1112808 vtaK 321314001269 vtaK Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage tail assembly protein YP_215986.1 1112071 D 321314 CDS YP_215987.1 62179570 1112745..1113410 1 NC_006905.1 Gifsy-2 prophage tail assembly protein 1113410 vtaI 321314001270 vtaI Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage tail assembly protein YP_215987.1 1112745 D 321314 CDS YP_215988.1 62179571 1116870..1117112 1 NC_006905.1 hypothetical protein 1117112 321314001272 SC1001 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215988.1 1116870 D 321314 CDS YP_215989.1 62179572 1117166..1119604 1 NC_006905.1 IPR000104: Antifreeze protein, type I; Gifsy-2 prophage tail fiber protein 1119604 stf 321314001273 stf Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage tail fiber protein YP_215989.1 1117166 D 321314 CDS YP_215990.1 62179573 1119604..1120185 1 NC_006905.1 Gifsy-2 prophage tail fiber assembly like-protein 1120185 ycdD 321314001274 ycdD Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage tail fiber assembly like-protein YP_215990.1 1119604 D 321314 CDS YP_215991.1 62179574 1120768..1121628 1 NC_006905.1 Gifsy-2 prophage type III secreted protein 1121628 sseI 321314001275 sseI Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage type III secreted protein YP_215991.1 1120768 D 321314 CDS YP_215992.1 62179575 1121821..1122069 1 NC_006905.1 ISSfl3 orfC,D 1122069 321314001276 SC1005 Salmonella enterica subsp. enterica serovar Choleraesuis str. ISSfl3 orfC,D YP_215992.1 1121821 D 321314 CDS YP_215993.1 62179576 complement(1122201..1122827) 1 NC_006905.1 hypothetical protein 1122827 yedK 321314001277 yedK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215993.1 1122201 R 321314 CDS YP_215994.1 62179577 1122803..1122958 1 NC_006905.1 hypothetical protein 1122958 321314001278 SC1007 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215994.1 1122803 D 321314 CDS YP_215995.1 62179578 complement(1123180..1123866) 1 NC_006905.1 Gifsy-2 prophage protein 1123866 321314001279 SC1008 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage protein YP_215995.1 1123180 R 321314 CDS YP_215996.1 62179579 complement(1124136..1124402) 1 NC_006905.1 Gifsy-2 prophage MsgA 1124402 msgA 321314001280 msgA Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage MsgA YP_215996.1 1124136 R 321314 CDS YP_215997.2 229037913 1124754..1127366 1 NC_006905.1 IPR001930: Peptidase M1, membrane alanine aminopeptidase; IPR006025: Neutral zinc metallopeptidases, zinc-binding site; aminopeptidase 1127366 pepN 321314001281 pepN Salmonella enterica subsp. enterica serovar Choleraesuis str. aminopeptidase YP_215997.2 1124754 D 321314 CDS YP_215998.1 62179581 1127574..1128584 1 NC_006905.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1128584 pyrD 321314001282 pyrD Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydroorotate dehydrogenase 2 YP_215998.1 1127574 D 321314 CDS YP_215999.1 62179582 1128751..1129293 1 NC_006905.1 hypothetical protein 1129293 ycbW 321314001283 ycbW Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_215999.1 1128751 D 321314 CDS YP_216000.1 62179583 complement(1129290..1130399) 1 NC_006905.1 hypothetical protein 1130399 ycbX 321314001284 ycbX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216000.1 1129290 R 321314 CDS YP_216001.1 62179584 1130498..1132606 1 NC_006905.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1132606 rlmL 321314001285 rlmL Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA m(2)G2445 methyltransferase YP_216001.1 1130498 D 321314 CDS YP_216002.1 62179585 1134541..1135794 1 NC_006905.1 paraquat-inducible protein A 1135794 pqiA 321314001287 pqiA Salmonella enterica subsp. enterica serovar Choleraesuis str. paraquat-inducible protein A YP_216002.1 1134541 D 321314 CDS YP_216003.1 62179586 1135799..1137439 1 NC_006905.1 paraquat-inducible protein B 1137439 pqiB 321314001288 pqiB Salmonella enterica subsp. enterica serovar Choleraesuis str. paraquat-inducible protein B YP_216003.1 1135799 D 321314 CDS YP_216004.1 62179587 1137436..1137999 1 NC_006905.1 outer membrane protein 1137999 ymbA 321314001289 ymbA Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_216004.1 1137436 D 321314 CDS YP_216005.1 62179588 1138255..1138422 1 NC_006905.1 ribosome modulation factor 1138422 rmf 321314001290 rmf Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosome modulation factor YP_216005.1 1138255 D 321314 CDS YP_216006.1 62179589 complement(1138522..1139040) 1 NC_006905.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1139040 fabA 321314001291 fabA Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-hydroxydecanoyl-ACP dehydratase YP_216006.1 1138522 R 321314 CDS YP_216007.1 62179590 complement(1139109..1140869) 1 NC_006905.1 IPR001984: Peptidase family S16; hypothetical protein 1140869 lonH 321314001292 lonH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216007.1 1139109 R 321314 CDS YP_216008.1 62179591 1141055..1141507 1 NC_006905.1 hypothetical protein 1141507 ycbG 321314001293 ycbG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216008.1 1141055 D 321314 CDS YP_216009.1 62179592 complement(1141579..1142631) 1 NC_006905.1 OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein OmpA 1142631 ompA 321314001294 ompA Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein OmpA YP_216009.1 1141579 R 321314 CDS YP_216010.1 62179593 complement(1142988..1143497) 1 NC_006905.1 SOS cell division inhibitor 1143497 sulA 321314001295 sulA Salmonella enterica subsp. enterica serovar Choleraesuis str. SOS cell division inhibitor YP_216010.1 1142988 R 321314 CDS YP_216011.1 62179594 1143714..1144319 1 NC_006905.1 hypothetical protein 1144319 yccR 321314001296 yccR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216011.1 1143714 D 321314 CDS YP_216012.1 62179595 complement(1144306..1146459) 1 NC_006905.1 IPR005829: Sugar transporter superfamily; efflux (PET) family transporter 1146459 yccS 321314001297 yccS Salmonella enterica subsp. enterica serovar Choleraesuis str. efflux (PET) family transporter YP_216012.1 1144306 R 321314 CDS YP_216013.1 62179596 complement(1146478..1146924) 1 NC_006905.1 hypothetical protein 1146924 yccF 321314001298 yccF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216013.1 1146478 R 321314 CDS YP_216014.1 62179597 1147048..1149102 1 NC_006905.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1149102 helD 321314001299 helD Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA helicase IV YP_216014.1 1147048 D 321314 CDS YP_216015.1 62179598 complement(1149138..1149596) 1 NC_006905.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1149596 mgsA 321314001300 mgsA Salmonella enterica subsp. enterica serovar Choleraesuis str. methylglyoxal synthase YP_216015.1 1149138 R 321314 CDS YP_216016.1 62179599 complement(1149691..1150353) 1 NC_006905.1 hypothetical protein 1150353 yccT 321314001301 yccT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216016.1 1149691 R 321314 CDS YP_216017.1 62179600 1150524..1150940 1 NC_006905.1 IPR003781: CoA-binding domain; hypothetical protein 1150940 yccU 321314001302 yccU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216017.1 1150524 D 321314 CDS YP_216018.1 62179601 complement(1150985..1151302) 1 NC_006905.1 heat shock protein HspQ 1151302 yccV 321314001303 yccV Salmonella enterica subsp. enterica serovar Choleraesuis str. heat shock protein HspQ YP_216018.1 1150985 R 321314 CDS YP_216019.1 62179602 complement(1151360..1152727) 1 NC_006905.1 IPR000051: SAM (and some other nucleotide) binding motif; IPR002478: PUA domain; hypothetical protein 1152727 yccW 321314001304 yccW Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216019.1 1151360 R 321314 CDS YP_216020.1 62179603 1152786..1153334 1 NC_006905.1 outer membrane protein 1153334 ybcL 321314001305 ybcL Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_216020.1 1152786 D 321314 CDS YP_216021.1 62179604 1153360..1154139 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 1154139 ybcM 321314001306 ybcM Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_216021.1 1153360 D 321314 CDS YP_216022.1 62179605 1154188..1154469 1 NC_006905.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1154469 yccX 321314001307 yccX Salmonella enterica subsp. enterica serovar Choleraesuis str. acylphosphatase YP_216022.1 1154188 D 321314 CDS YP_216023.1 62179606 complement(1154466..1154795) 1 NC_006905.1 transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE 1154795 yccK 321314001308 yccK Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfur transfer protein TusE YP_216023.1 1154466 R 321314 CDS YP_216024.1 62179607 complement(1154882..1155541) 1 NC_006905.1 IPR006213: Bax inhibitor 1; hypothetical protein 1155541 yccA 321314001309 yccA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216024.1 1154882 R 321314 CDS YP_216026.1 62179609 complement(1156160..1156840) 1 NC_006905.1 IPR006025: Neutral zinc metallopeptidases, zinc-binding site; pathogenicity island encoded protein: SPI3 1156840 pipA 321314001311 pipA Salmonella enterica subsp. enterica serovar Choleraesuis str. pathogenicity island encoded protein: SPI3 YP_216026.1 1156160 R 321314 CDS YP_216027.1 62179610 complement(1157062..1157937) 1 NC_006905.1 IPR000169: Eukaryotic thiol (cysteine) protease; pathogenicity island encoded protein: SPI3 1157937 pipB 321314001312 pipB Salmonella enterica subsp. enterica serovar Choleraesuis str. pathogenicity island encoded protein: SPI3 YP_216027.1 1157062 R 321314 CDS YP_216028.1 62179611 1158149..1158475 1 NC_006905.1 inner membrane protein 1158475 321314001313 SC1041 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216028.1 1158149 D 321314 CDS YP_216029.1 62179612 complement(1158485..1158826) 1 NC_006905.1 hypothetical protein 1158826 pipC 321314001314 pipC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216029.1 1158485 R 321314 CDS YP_216030.1 62179613 complement(1158843..1160528) 1 NC_006905.1 similar to ipgD of Shigella; outer protein 1160528 sopB 321314001315 sopB Salmonella enterica subsp. enterica serovar Choleraesuis str. outer protein YP_216030.1 1158843 R 321314 CDS YP_216031.1 62179614 complement(1160620..1161624) 1 NC_006905.1 pathogenicity island encoded protein: SPI3 1161624 pipD 321314001316 pipD Salmonella enterica subsp. enterica serovar Choleraesuis str. pathogenicity island encoded protein: SPI3 YP_216031.1 1160620 R 321314 CDS YP_216032.1 62179615 complement(1161704..1163068) 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR005467: Histidine kinase; copper resistance; histidine kinase 1163068 copS 321314001317 copS Salmonella enterica subsp. enterica serovar Choleraesuis str. copper resistance; histidine kinase YP_216032.1 1161704 R 321314 CDS YP_216033.2 162139597 complement(1163061..1163741) 1 NC_006905.1 induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW 1163741 copR 321314001318 copR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulatory protein YedW YP_216033.2 1163061 R 321314 CDS YP_216034.1 62179617 1163877..1164287 1 NC_006905.1 IPR000895: Transthyretin; hypothetical protein 1164287 yedX 321314001319 yedX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216034.1 1163877 D 321314 CDS YP_216035.1 62179618 complement(1164620..1165132) 1 NC_006905.1 4-hydroxyphenylacetate catabolism 1165132 hpaC 321314001320 hpaC Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216035.1 1164620 R 321314 CDS YP_216036.1 62179619 complement(1165150..1166712) 1 NC_006905.1 4-hydroxyphenylacetate catabolism 1166712 hpaB 321314001321 hpaB Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216036.1 1165150 R 321314 CDS YP_216037.1 62179620 complement(1166930..1167370) 1 NC_006905.1 IPR000835: Bacterial regulatory protein, MarR family; 4-hydroxyphenylacetate catabolism 1167370 hpaR 321314001322 hpaR Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216037.1 1166930 R 321314 CDS YP_216038.1 62179621 1167645..1168934 1 NC_006905.1 4-hydroxyphenylacetate catabolism 1168934 hpaG 321314001323 hpaG Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216038.1 1167645 D 321314 CDS YP_216039.1 62179622 1168931..1170397 1 NC_006905.1 IPR002086: Aldehyde dehydrogenase; 4-hydroxyphenylacetate catabolism 1170397 hpaE 321314001324 hpaE Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216039.1 1168931 D 321314 CDS YP_216040.1 62179623 1170399..1171250 1 NC_006905.1 4-hydroxyphenylacetate catabolism 1171250 hpaD 321314001325 hpaD Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216040.1 1170399 D 321314 CDS YP_216041.1 62179624 1171260..1171640 1 NC_006905.1 4-hydroxyphenylacetate catabolism 1171640 hpaF 321314001326 hpaF Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216041.1 1171260 D 321314 CDS YP_216042.1 62179625 1171773..1172576 1 NC_006905.1 IPR002607: Hydratase/decarboxylase; 4-hydroxyphenylacetate catabolism 1172576 hpaH 321314001327 hpaH Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216042.1 1171773 D 321314 CDS YP_216043.1 62179626 1172587..1173378 1 NC_006905.1 4-hydroxyphenylacetate catabolism 1173378 hpaI 321314001328 hpaI Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216043.1 1172587 D 321314 CDS YP_216044.1 62179627 1173450..1174826 1 NC_006905.1 IPR007114: Major facilitator superfamily; 4-hydroxyphenylacetate catabolism 1174826 hpaX 321314001329 hpaX Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216044.1 1173450 D 321314 CDS YP_216045.1 62179628 1174836..1175732 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; 4-hydroxyphenylacetate catabolism 1175732 hpaA 321314001330 hpaA Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxyphenylacetate catabolism YP_216045.1 1174836 D 321314 CDS YP_216046.1 62179629 1175746..1176684 1 NC_006905.1 hypothetical protein 1176684 ars 321314001331 ars Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216046.1 1175746 D 321314 CDS YP_216047.1 62179630 complement(1177092..1177454) 1 NC_006905.1 hypothetical protein 1177454 elbA 321314001332 elbA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216047.1 1177092 R 321314 CDS YP_216048.1 62179631 1177902..1178057 1 NC_006905.1 hypothetical protein 1178057 321314001333 SC1061 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216048.1 1177902 D 321314 CDS YP_216049.1 62179632 complement(1178108..1178413) 1 NC_006905.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM 1178413 yccD 321314001334 yccD Salmonella enterica subsp. enterica serovar Choleraesuis str. chaperone-modulator protein CbpM YP_216049.1 1178108 R 321314 CDS YP_216050.1 62179633 complement(1178413..1179333) 1 NC_006905.1 functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA 1179333 cbpA 321314001335 cbpA Salmonella enterica subsp. enterica serovar Choleraesuis str. curved DNA-binding protein CbpA YP_216050.1 1178413 R 321314 CDS YP_216051.1 62179634 1179569..1179931 1 NC_006905.1 IPR002016: Haem peroxidase; suppression of copper sensitivity copper binding protein 1179931 321314001336 SC1064 Salmonella enterica subsp. enterica serovar Choleraesuis str. suppression of copper sensitivity copper binding protein YP_216051.1 1179569 D 321314 CDS YP_216052.1 62179635 1181863..1182486 1 NC_006905.1 IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; hypothetical protein 1182486 321314001338 SC1065 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216052.1 1181863 D 321314 CDS YP_216053.1 62179636 1182476..1182982 1 NC_006905.1 IPR006663: Thioredoxin domain 2; hypothetical protein 1182982 321314001339 SC1066 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216053.1 1182476 D 321314 CDS YP_216054.1 62179637 1183115..1184356 1 NC_006905.1 IPR000560: Histidine acid phosphatase; glucose-1-phosphatase/inositol phosphatase 1184356 agp 321314001340 agp Salmonella enterica subsp. enterica serovar Choleraesuis str. glucose-1-phosphatase/inositol phosphatase YP_216054.1 1183115 D 321314 CDS YP_216055.1 62179638 complement(1184390..1184617) 1 NC_006905.1 hypothetical protein 1184617 yccJ 321314001341 yccJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216055.1 1184390 R 321314 CDS YP_216056.1 62179639 complement(1184638..1185117) 1 NC_006905.1 IPR008254: Flavodoxin/nitric oxide synthase; trp-repressor binding protein 1185117 wraB 321314001342 wraB Salmonella enterica subsp. enterica serovar Choleraesuis str. trp-repressor binding protein YP_216056.1 1184638 R 321314 CDS YP_216057.1 62179640 1185248..1185475 1 NC_006905.1 hypothetical protein 1185475 321314001343 SC1070 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216057.1 1185248 D 321314 CDS YP_216058.1 62179641 1185515..1185709 1 NC_006905.1 hypothetical protein 1185709 321314001344 SC1071 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216058.1 1185515 D 321314 CDS YP_216059.1 62179642 1185806..1186444 1 NC_006905.1 IPR001647: Bacterial regulatory protein TetR, HTH motif; TetR/AcrR family transcriptional regulator 1186444 ycdC 321314001345 ycdC Salmonella enterica subsp. enterica serovar Choleraesuis str. TetR/AcrR family transcriptional regulator YP_216059.1 1185806 D 321314 CDS YP_216060.1 62179643 complement(1186441..1186836) 1 NC_006905.1 hypothetical protein 1186836 321314001346 SC1073 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216060.1 1186441 R 321314 CDS YP_216061.1 62179644 complement(1186895..1190857) 1 NC_006905.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1190857 putA 321314001347 putA Salmonella enterica subsp. enterica serovar Choleraesuis str. trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_216061.1 1186895 R 321314 CDS YP_216062.1 62179645 1190918..1191049 1 NC_006905.1 hypothetical protein 1191049 321314001348 SC1075 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216062.1 1190918 D 321314 CDS YP_216063.1 62179646 1191279..1192787 1 NC_006905.1 IPR001734: Na+/solute symporter; SSS family major sodium/proline symporter 1192787 putP 321314001349 putP Salmonella enterica subsp. enterica serovar Choleraesuis str. SSS family major sodium/proline symporter YP_216063.1 1191279 D 321314 CDS YP_216064.1 62179647 1193614..1194468 1 NC_006905.1 IPR003714: PhoH-like protein; hypothetical protein 1194468 phoH 321314001350 phoH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216064.1 1193614 D 321314 CDS YP_216065.1 62179648 complement(1194574..1195455) 1 NC_006905.1 transcriptional regulator 1195455 hthR 321314001351 hthR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_216065.1 1194574 R 321314 CDS YP_216066.1 62179649 complement(1197573..1198253) 1 NC_006905.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 1198253 321314001353 SC1079 Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylmannosamine-6-phosphate 2-epimerase YP_216066.1 1197573 R 321314 CDS YP_216067.1 62179650 1198759..1199919 1 NC_006905.1 IPR006652: Kelch repeat; N-acetylneuraminic acid mutarotase 1199919 yjhT 321314001354 yjhT Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylneuraminic acid mutarotase YP_216067.1 1198759 D 321314 CDS YP_216068.1 62179651 1199965..1200657 1 NC_006905.1 outer membrane protein 1200657 yiiy 321314001355 yiiy Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_216068.1 1199965 D 321314 CDS YP_216069.1 62179652 1203569..1204675 1 NC_006905.1 IPR000683: Oxidoreductase, N-terminal; IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR004104: Oxidoreductase, C-terminal; dehydrogenase-like protein 1204675 yjhC 321314001357 yjhC Salmonella enterica subsp. enterica serovar Choleraesuis str. dehydrogenase-like protein YP_216069.1 1203569 D 321314 CDS YP_216070.1 62179653 1205151..1206089 1 NC_006905.1 oxidoreductase 1206089 ycdW 321314001359 ycdW Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_216070.1 1205151 D 321314 CDS YP_216071.1 62179654 1206174..1206911 1 NC_006905.1 hydrolase 1206911 ycdX 321314001360 ycdX Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase YP_216071.1 1206174 D 321314 CDS YP_216072.1 62179655 1206935..1207489 1 NC_006905.1 hypothetical protein 1207489 ycdY 321314001361 ycdY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216072.1 1206935 D 321314 CDS YP_216073.1 62179656 1207542..1208072 1 NC_006905.1 hypothetical protein 1208072 ycdZ 321314001362 ycdZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216073.1 1207542 D 321314 CDS YP_216074.1 62179657 complement(1208110..1208943) 1 NC_006905.1 transcriptional regulator in curly assembly/transport, 2nd curli operon 1208943 csgG 321314001363 csgG Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator in curly assembly/transport, 2nd curli operon YP_216074.1 1208110 R 321314 CDS YP_216075.1 62179658 complement(1208970..1209386) 1 NC_006905.1 nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF 1209386 csgF 321314001364 csgF Salmonella enterica subsp. enterica serovar Choleraesuis str. curli assembly protein CsgF YP_216075.1 1208970 R 321314 CDS YP_216076.1 62179659 complement(1209413..1209808) 1 NC_006905.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 1209808 csgE 321314001365 csgE Salmonella enterica subsp. enterica serovar Choleraesuis str. curli assembly protein CsgE YP_216076.1 1209413 R 321314 CDS YP_216077.1 62179660 complement(1209813..1210463) 1 NC_006905.1 activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD 1210463 csgD 321314001366 csgD Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator CsgD YP_216077.1 1209813 R 321314 CDS YP_216078.1 62179661 1211218..1211673 1 NC_006905.1 CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1211673 csgB 321314001367 csgB Salmonella enterica subsp. enterica serovar Choleraesuis str. curlin minor subunit YP_216078.1 1211218 D 321314 CDS YP_216079.1 62179662 1211715..1212170 1 NC_006905.1 cryptic curlin major subunit 1212170 csgA 321314001368 csgA Salmonella enterica subsp. enterica serovar Choleraesuis str. cryptic curlin major subunit YP_216079.1 1211715 D 321314 CDS YP_216080.2 229037912 1212232..1212558 1 NC_006905.1 involved in autoagglutination of curliated cells; not involved in production of curli fibers; autoagglutination protein 1212558 csgC 321314001369 csgC Salmonella enterica subsp. enterica serovar Choleraesuis str. autoagglutination protein YP_216080.2 1212232 D 321314 CDS YP_216081.1 62179664 1212689..1213009 1 NC_006905.1 hypothetical protein 1213009 ymdA 321314001370 ymdA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216081.1 1212689 D 321314 CDS YP_216082.1 62179665 1213442..1215028 1 NC_006905.1 IPR001736: Phospholipase D/Transphosphatidylase; hypothetical protein 1215028 ymdC 321314001372 ymdC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216082.1 1213442 D 321314 CDS YP_216083.1 62179666 complement(1215045..1216199) 1 NC_006905.1 required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein 1216199 mdoC 321314001373 mdoC Salmonella enterica subsp. enterica serovar Choleraesuis str. glucans biosynthesis protein YP_216083.1 1215045 R 321314 CDS YP_216084.1 62179667 1216480..1218006 1 NC_006905.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1218006 mdoG 321314001374 mdoG Salmonella enterica subsp. enterica serovar Choleraesuis str. glucan biosynthesis protein G YP_216084.1 1216480 D 321314 CDS YP_216085.1 62179668 1217969..1220542 1 NC_006905.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1220542 mdoH 321314001375 mdoH Salmonella enterica subsp. enterica serovar Choleraesuis str. glucosyltransferase MdoH YP_216085.1 1217969 D 321314 CDS YP_216086.1 62179669 1220604..1220843 1 NC_006905.1 hypothetical protein 1220843 yceK 321314001376 yceK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216086.1 1220604 D 321314 CDS YP_216087.1 62179670 complement(1220844..1221218) 1 NC_006905.1 hypothetical protein 1221218 msyB 321314001377 msyB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216087.1 1220844 R 321314 CDS YP_216088.1 62179671 complement(1221300..1222514) 1 NC_006905.1 Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG 1222514 yceE 321314001378 yceE Salmonella enterica subsp. enterica serovar Choleraesuis str. drug efflux system protein MdtG YP_216088.1 1221300 R 321314 CDS YP_216089.2 162139596 complement(1222669..1223589) 1 NC_006905.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1223589 htrB 321314001379 htrB Salmonella enterica subsp. enterica serovar Choleraesuis str. lipid A biosynthesis lauroyl acyltransferase YP_216089.2 1222669 R 321314 CDS YP_216090.1 62179673 1223809..1224861 1 NC_006905.1 IPR001763: Rhodanese-like; hypothetical protein 1224861 yceA 321314001380 yceA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216090.1 1223809 D 321314 CDS YP_216091.1 62179674 complement(1224913..1225488) 1 NC_006905.1 hypothetical protein 1225488 yceI 321314001381 yceI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216091.1 1224913 R 321314 CDS YP_216092.1 62179675 complement(1225485..1226057) 1 NC_006905.1 IPR000516: Nickel-dependent hydrogenase b-type cytochrome subunit; inner membrane protein 1226057 321314001382 SC1105 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216092.1 1225485 R 321314 CDS YP_216093.1 62179676 1226068..1226271 1 NC_006905.1 hypothetical protein 1226271 321314001383 SC1106 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216093.1 1226068 D 321314 CDS YP_216094.1 62179677 complement(1226320..1226433) 1 NC_006905.1 inner membrane protein 1226433 yceO 321314001384 yceO Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216094.1 1226320 R 321314 CDS YP_216095.1 62179678 complement(1226474..1227592) 1 NC_006905.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 1227592 solA 321314001385 solA Salmonella enterica subsp. enterica serovar Choleraesuis str. N-methyltryptophan oxidase YP_216095.1 1226474 R 321314 CDS YP_216096.1 62179679 complement(1227705..1227959) 1 NC_006905.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS 1227959 bssS 321314001386 bssS Salmonella enterica subsp. enterica serovar Choleraesuis str. biofilm formation regulatory protein BssS YP_216096.1 1227705 R 321314 CDS YP_216097.2 229037911 complement(1228249..1228494) 1 NC_006905.1 DNA damage-inducible protein I 1228494 dinI 321314001387 dinI Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA damage-inducible protein I YP_216097.2 1228249 R 321314 CDS YP_216098.1 62179681 complement(1228568..1229614) 1 NC_006905.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1229614 pyrC 321314001388 pyrC Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydroorotase YP_216098.1 1228568 R 321314 CDS YP_216099.1 62179682 complement(1229718..1230278) 1 NC_006905.1 hypothetical protein 1230278 yceB 321314001389 yceB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216099.1 1229718 R 321314 CDS YP_216100.1 62179683 complement(1230403..1231050) 1 NC_006905.1 cofactor involved in the reduction of disulfides; glutaredoxin 1231050 grxB 321314001390 grxB Salmonella enterica subsp. enterica serovar Choleraesuis str. glutaredoxin YP_216100.1 1230403 R 321314 CDS YP_216101.1 62179684 complement(1231114..1232322) 1 NC_006905.1 Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 1232322 yceL 321314001391 yceL Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug resistance protein MdtH YP_216101.1 1231114 R 321314 CDS YP_216102.1 62179685 1232559..1233143 1 NC_006905.1 ribosomal-protein-S5-alanine N-acetyltransferase 1233143 rimJ 321314001392 rimJ Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosomal-protein-S5-alanine N-acetyltransferase YP_216102.1 1232559 D 321314 CDS YP_216103.1 62179686 1233179..1233826 1 NC_006905.1 hypothetical protein 1233826 yceH 321314001393 yceH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216103.1 1233179 D 321314 CDS YP_216104.1 62179687 1235098..1236591 1 NC_006905.1 virulence factor 1236591 mviN 321314001395 mviN Salmonella enterica subsp. enterica serovar Choleraesuis str. virulence factor YP_216104.1 1235098 D 321314 CDS YP_216105.1 62179688 complement(1236673..1237095) 1 NC_006905.1 for FlgK and FlgL; flagellar biosynthesis chaperone 1237095 flgN 321314001396 flgN Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis chaperone YP_216105.1 1236673 R 321314 CDS YP_216106.1 62179689 complement(1237100..1237393) 1 NC_006905.1 regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM 1237393 flgM 321314001397 flgM Salmonella enterica subsp. enterica serovar Choleraesuis str. anti-sigma-28 factor FlgM YP_216106.1 1237100 R 321314 CDS YP_216107.1 62179690 complement(1237485..1238144) 1 NC_006905.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1238144 flgA 321314001398 flgA Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar basal body P-ring biosynthesis protein FlgA YP_216107.1 1237485 R 321314 CDS YP_216108.1 62179691 1238301..1238717 1 NC_006905.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 1238717 flgB 321314001399 flgB Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar basal-body rod protein FlgB YP_216108.1 1238301 D 321314 CDS YP_216109.1 62179692 1238721..1239125 1 NC_006905.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1239125 flgC 321314001400 flgC Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar basal body rod protein FlgC YP_216109.1 1238721 D 321314 CDS YP_216110.1 62179693 1239137..1239835 1 NC_006905.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1239835 flgD 321314001401 flgD Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar basal body rod modification protein YP_216110.1 1239137 D 321314 CDS YP_216111.1 62179694 1239862..1241073 1 NC_006905.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1241073 flgE 321314001402 flgE Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar hook protein FlgE YP_216111.1 1239862 D 321314 CDS YP_216112.1 62179695 1241094..1241849 1 NC_006905.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1241849 flgF 321314001403 flgF Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar basal body rod protein FlgF YP_216112.1 1241094 D 321314 CDS YP_216113.1 62179696 1241863..1242645 1 NC_006905.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1242645 flgG 321314001404 flgG Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar basal body rod protein FlgG YP_216113.1 1241863 D 321314 CDS YP_216114.1 62179697 1242691..1243398 1 NC_006905.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1243398 flgH 321314001405 flgH Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar basal body L-ring protein YP_216114.1 1242691 D 321314 CDS YP_216115.1 62179698 1243404..1244507 1 NC_006905.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 1244507 flgI 321314001406 flgI Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar basal body P-ring biosynthesis protein FlgA YP_216115.1 1243404 D 321314 CDS YP_216116.1 62179699 1244507..1245457 1 NC_006905.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1245457 flgJ 321314001407 flgJ Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar rod assembly protein/muramidase FlgJ YP_216116.1 1244507 D 321314 CDS YP_216117.1 62179700 1245522..1247183 1 NC_006905.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1247183 flgK 321314001408 flgK Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar hook-associated protein FlgK YP_216117.1 1245522 D 321314 CDS YP_216118.1 62179701 1247198..1248151 1 NC_006905.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 1248151 flgL 321314001409 flgL Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar hook-associated protein FlgL YP_216118.1 1247198 D 321314 CDS YP_216119.1 62179702 complement(1248408..1251614) 1 NC_006905.1 bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E 1251614 rne 321314001410 rne Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease E YP_216119.1 1248408 R 321314 CDS YP_216120.1 62179703 1251750..1251998 1 NC_006905.1 hypothetical protein 1251998 321314001411 SC1133 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216120.1 1251750 D 321314 CDS YP_216121.2 162139595 1252188..1253147 1 NC_006905.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 1253147 rluC 321314001412 rluC Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA pseudouridylate synthase C YP_216121.2 1252188 D 321314 CDS YP_216122.1 62179705 1253285..1254046 1 NC_006905.1 inner membrane lipoprotein 1254046 321314001413 SC1135 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane lipoprotein YP_216122.1 1253285 D 321314 CDS YP_216123.1 62179706 1254252..1254476 1 NC_006905.1 hypothetical protein 1254476 321314001414 SC1136 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216123.1 1254252 D 321314 CDS YP_216124.1 62179707 complement(1254549..1255133) 1 NC_006905.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1255133 maf 321314001415 maf Salmonella enterica subsp. enterica serovar Choleraesuis str. Maf-like protein YP_216124.1 1254549 R 321314 CDS YP_216125.1 62179708 1255331..1255852 1 NC_006905.1 hypothetical protein 1255852 yceD 321314001416 yceD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216125.1 1255331 D 321314 CDS YP_216126.1 62179709 1255904..1256077 1 NC_006905.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1256077 rpmF 321314001417 rpmF Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L32 YP_216126.1 1255904 D 321314 CDS YP_216127.1 62179710 1256211..1257290 1 NC_006905.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1257290 plsX 321314001418 plsX Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol-3-phosphate acyltransferase PlsX YP_216127.1 1256211 D 321314 CDS YP_216128.1 62179711 1257370..1258323 1 NC_006905.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1258323 fabH 321314001419 fabH Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-oxoacyl-ACP synthase YP_216128.1 1257370 D 321314 CDS YP_216129.1 62179712 1258339..1259268 1 NC_006905.1 ACP S-malonyltransferase 1259268 fabD 321314001420 fabD Salmonella enterica subsp. enterica serovar Choleraesuis str. ACP S-malonyltransferase YP_216129.1 1258339 D 321314 CDS YP_216130.1 62179713 1259281..1260015 1 NC_006905.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1260015 fabG 321314001421 fabG Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-ketoacyl-ACP reductase YP_216130.1 1259281 D 321314 CDS YP_216131.1 62179714 1260171..1260407 1 NC_006905.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1260407 acpP 321314001422 acpP Salmonella enterica subsp. enterica serovar Choleraesuis str. acyl carrier protein YP_216131.1 1260171 D 321314 CDS YP_216132.1 62179715 1260493..1261734 1 NC_006905.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1261734 fabF 321314001423 fabF Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-oxoacyl-ACP synthase YP_216132.1 1260493 D 321314 CDS YP_216133.1 62179716 1261848..1262249 1 NC_006905.1 hypothetical protein 1262249 321314001424 SC1146 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216133.1 1261848 D 321314 CDS YP_216134.1 62179717 1262420..1263103 1 NC_006905.1 integrase 1263103 yis2 321314001425 yis2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_216134.1 1262420 D 321314 CDS YP_216135.1 62179718 1263173..1263982 1 NC_006905.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1263982 pabC 321314001426 pabC Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-amino-4-deoxychorismate lyase YP_216135.1 1263173 D 321314 CDS YP_216136.1 62179719 1263985..1265007 1 NC_006905.1 IPR003770: Protein of unknown function DUF175; hypothetical protein 1265007 yceG 321314001427 yceG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216136.1 1263985 D 321314 CDS YP_216137.1 62179720 1264997..1265638 1 NC_006905.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1265638 tmk 321314001428 tmk Salmonella enterica subsp. enterica serovar Choleraesuis str. thymidylate kinase YP_216137.1 1264997 D 321314 CDS YP_216138.1 62179721 1265635..1266639 1 NC_006905.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1266639 holB 321314001429 holB Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase III subunit delta' YP_216138.1 1265635 D 321314 CDS YP_216139.1 62179722 1266650..1267447 1 NC_006905.1 IPR001130: TatD-related deoxyribonuclease; metallodependent hydrolase 1267447 ycfH 321314001430 ycfH Salmonella enterica subsp. enterica serovar Choleraesuis str. metallodependent hydrolase YP_216139.1 1266650 D 321314 CDS YP_216140.1 62179723 1267742..1269175 1 NC_006905.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 1269175 ptsG 321314001431 ptsG Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system glucose-specific transporter subunit IIBC YP_216140.1 1267742 D 321314 CDS YP_216141.1 62179724 complement(1269261..1271435) 1 NC_006905.1 IPR000531: TonB-dependent receptor protein; ferric-rhodotorulic acid outer membrane transporter 1271435 fhuE 321314001432 fhuE Salmonella enterica subsp. enterica serovar Choleraesuis str. ferric-rhodotorulic acid outer membrane transporter YP_216141.1 1269261 R 321314 CDS YP_216142.1 62179725 1271759..1272136 1 NC_006905.1 IPR001310: Histidine triad (HIT) protein; purine nucleoside phosphoramidase 1272136 ycfF 321314001433 ycfF Salmonella enterica subsp. enterica serovar Choleraesuis str. purine nucleoside phosphoramidase YP_216142.1 1271759 D 321314 CDS YP_216143.1 62179726 1272139..1272513 1 NC_006905.1 outer membrane lipoprotein 1272513 ycfL 321314001434 ycfL Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_216143.1 1272139 D 321314 CDS YP_216144.1 62179727 1272527..1273156 1 NC_006905.1 outer membrane lipoprotein 1273156 ycfM 321314001435 ycfM Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_216144.1 1272527 D 321314 CDS YP_216145.1 62179728 1273137..1273961 1 NC_006905.1 catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1273961 thiK 321314001436 thiK Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine kinase YP_216145.1 1273137 D 321314 CDS YP_216146.1 62179729 1273972..1274997 1 NC_006905.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1274997 nagZ 321314001437 nagZ Salmonella enterica subsp. enterica serovar Choleraesuis str. beta-hexosaminidase YP_216146.1 1273972 D 321314 CDS YP_216147.1 62179730 1275022..1275564 1 NC_006905.1 hypothetical protein 1275564 ycfP 321314001438 ycfP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216147.1 1275022 D 321314 CDS YP_216148.1 62179731 1275842..1277122 1 NC_006905.1 respiratory NADH dehydrogenase 2; cupric reductase 1277122 ndh 321314001439 ndh Salmonella enterica subsp. enterica serovar Choleraesuis str. respiratory NADH dehydrogenase 2; cupric reductase YP_216148.1 1275842 D 321314 CDS YP_216149.1 62179732 1277301..1277840 1 NC_006905.1 hypothetical protein 1277840 ycfJ 321314001440 ycfJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216149.1 1277301 D 321314 CDS YP_216150.1 62179733 complement(1277914..1278549) 1 NC_006905.1 IPR001647: Bacterial regulatory protein TetR, HTH motif; TetR/AcrR family transcriptional regulator 1278549 ycfQ 321314001441 ycfQ Salmonella enterica subsp. enterica serovar Choleraesuis str. TetR/AcrR family transcriptional regulator YP_216150.1 1277914 R 321314 CDS YP_216151.1 62179734 1278725..1279048 1 NC_006905.1 outer membrane protein 1279048 ycfR 321314001442 ycfR Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_216151.1 1278725 D 321314 CDS YP_216152.1 62179735 complement(1279145..1280110) 1 NC_006905.1 hypothetical protein 1280110 ycfS 321314001443 ycfS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216152.1 1279145 R 321314 CDS YP_216153.1 62179736 complement(1280258..1283704) 1 NC_006905.1 IPR001410: DEAD/DEAH box helicase; transcription-repair coupling factor 1283704 mfd 321314001444 mfd Salmonella enterica subsp. enterica serovar Choleraesuis str. transcription-repair coupling factor YP_216153.1 1280258 R 321314 CDS YP_216154.1 62179737 1283931..1285241 1 NC_006905.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1285241 ycfU 321314001445 ycfU Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane-specific lipoprotein transporter subunit LolC YP_216154.1 1283931 D 321314 CDS YP_216155.1 62179738 1285234..1285935 1 NC_006905.1 outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 1285935 lolD 321314001446 lolD Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein transporter ATP-binding subunit YP_216155.1 1285234 D 321314 CDS YP_216156.1 62179739 1285935..1287179 1 NC_006905.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1287179 ycfW 321314001447 ycfW Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane-specific lipoprotein transporter subunit LolE YP_216156.1 1285935 D 321314 CDS YP_216157.1 62179740 1287208..1288119 1 NC_006905.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1288119 ycfX 321314001448 ycfX Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetyl-D-glucosamine kinase YP_216157.1 1287208 D 321314 CDS YP_216158.1 62179741 1288138..1288959 1 NC_006905.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1288959 cobB 321314001449 cobB Salmonella enterica subsp. enterica serovar Choleraesuis str. NAD-dependent deacetylase YP_216158.1 1288138 D 321314 CDS YP_216159.1 62179742 complement(1289041..1290087) 1 NC_006905.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein 1290087 potD 321314001450 potD Salmonella enterica subsp. enterica serovar Choleraesuis str. spermidine/putrescine ABC transporter substrate-binding protein YP_216159.1 1289041 R 321314 CDS YP_216160.1 62179743 complement(1290112..1290891) 1 NC_006905.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 1290891 potC 321314001451 potC Salmonella enterica subsp. enterica serovar Choleraesuis str. spermidine/putrescine ABC transporter membrane protein YP_216160.1 1290112 R 321314 CDS YP_216161.1 62179744 complement(1291208..1292218) 1 NC_006905.1 translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein 1292218 sifA 321314001452 sifA Salmonella enterica subsp. enterica serovar Choleraesuis str. secreted effector protein YP_216161.1 1291208 R 321314 CDS YP_216162.1 62179745 complement(1292277..1292453) 1 NC_006905.1 hypothetical protein 1292453 321314001453 SC1175 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216162.1 1292277 R 321314 CDS YP_216163.1 62179746 complement(1292547..1293410) 1 NC_006905.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 1293410 potB 321314001454 potB Salmonella enterica subsp. enterica serovar Choleraesuis str. spermidine/putrescine ABC transporter membrane protein YP_216163.1 1292547 R 321314 CDS YP_216164.1 62179747 complement(1293394..1294530) 1 NC_006905.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 1294530 potA 321314001455 potA Salmonella enterica subsp. enterica serovar Choleraesuis str. putrescine/spermidine ABC transporter ATPase YP_216164.1 1293394 R 321314 CDS YP_216165.1 62179748 1294781..1296010 1 NC_006905.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1296010 pepT 321314001456 pepT Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidase T YP_216165.1 1294781 D 321314 CDS YP_216166.1 62179749 1296014..1297348 1 NC_006905.1 hypothetical protein 1297348 321314001457 SC1179 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216166.1 1296014 D 321314 CDS YP_216167.1 62179750 complement(1297388..1298539) 1 NC_006905.1 IPR007113: Cupin domain; hypothetical protein 1298539 ycfD 321314001458 ycfD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216167.1 1297388 R 321314 CDS YP_216168.1 62179751 complement(1298590..1300053) 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensor protein PhoQ 1300053 phoQ 321314001459 phoQ Salmonella enterica subsp. enterica serovar Choleraesuis str. sensor protein PhoQ YP_216168.1 1298590 R 321314 CDS YP_216169.1 62179752 complement(1300053..1300727) 1 NC_006905.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP 1300727 phoP 321314001460 phoP Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator PhoP YP_216169.1 1300053 R 321314 CDS YP_216170.1 62179753 complement(1300851..1302221) 1 NC_006905.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1302221 purB 321314001461 purB Salmonella enterica subsp. enterica serovar Choleraesuis str. adenylosuccinate lyase YP_216170.1 1300851 R 321314 CDS YP_216171.1 62179754 complement(1302225..1302872) 1 NC_006905.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1302872 ycfC 321314001462 ycfC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216171.1 1302225 R 321314 CDS YP_216172.2 162139594 complement(1302953..1304059) 1 NC_006905.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1304059 mnmA 321314001463 mnmA Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA-specific 2-thiouridylase MnmA YP_216172.2 1302953 R 321314 CDS YP_216173.1 62179756 complement(1304113..1304574) 1 NC_006905.1 IPR000086: NUDIX hydrolase; MutT-like protein 1304574 ymfB 321314001464 ymfB Salmonella enterica subsp. enterica serovar Choleraesuis str. MutT-like protein YP_216173.1 1304113 R 321314 CDS YP_216174.1 62179757 complement(1304586..1304915) 1 NC_006905.1 hypothetical protein 1304915 321314001465 SC1187 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216174.1 1304586 R 321314 CDS YP_216175.1 62179758 complement(1304912..1305571) 1 NC_006905.1 IPR000748: Pseudouridine synthase, Rsu; ribosomal large subunit pseudouridine synthase 1305571 ymfC 321314001466 ymfC Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosomal large subunit pseudouridine synthase YP_216175.1 1304912 R 321314 CDS YP_216176.1 62179759 1305665..1306915 1 NC_006905.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1306915 icdA 321314001467 icdA Salmonella enterica subsp. enterica serovar Choleraesuis str. isocitrate dehydrogenase YP_216176.1 1305665 D 321314 CDS YP_216177.1 62179760 complement(1307027..1308154) 1 NC_006905.1 prophage lambda integrase (Int(lambda)) 1308154 intE 321314001468 intE Salmonella enterica subsp. enterica serovar Choleraesuis str. prophage lambda integrase (Int(lambda)) YP_216177.1 1307027 R 321314 CDS YP_216178.1 62179761 1308400..1309608 1 NC_006905.1 transposase of Tn10 1309608 tnpR 321314001469 tnpR Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase of Tn10 YP_216178.1 1308400 D 321314 CDS YP_216179.1 62179762 complement(1309795..1309944) 1 NC_006905.1 hypothetical protein 1309944 321314001470 SC1192 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216179.1 1309795 R 321314 CDS YP_216180.1 62179763 complement(1310081..1310908) 1 NC_006905.1 hypothetical protein 1310908 yfdQ 321314001471 yfdQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216180.1 1310081 R 321314 CDS YP_216181.1 62179764 complement(1310966..1311322) 1 NC_006905.1 hypothetical protein 1311322 yfdP 321314001472 yfdP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216181.1 1310966 R 321314 CDS YP_216182.1 62179765 1311443..1311928 1 NC_006905.1 hypothetical protein 1311928 321314001473 SC1195 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216182.1 1311443 D 321314 CDS YP_216183.1 62179766 complement(1312329..1313108) 1 NC_006905.1 regulatory protein 1313108 rpc 321314001474 rpc Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein YP_216183.1 1312329 R 321314 CDS YP_216184.1 62179767 1313459..1314013 1 NC_006905.1 hypothetical protein 1314013 ymfL 321314001475 ymfL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216184.1 1313459 D 321314 CDS YP_216185.1 62179768 1314010..1316490 1 NC_006905.1 antirepressor 1316490 321314001476 SC1198 Salmonella enterica subsp. enterica serovar Choleraesuis str. antirepressor YP_216185.1 1314010 D 321314 CDS YP_216188.1 62179771 1316708..1317526 1 NC_006905.1 replication protein 1317526 321314001477 SC1201 Salmonella enterica subsp. enterica serovar Choleraesuis str. replication protein YP_216188.1 1316708 D 321314 CDS YP_216189.1 62179772 1318010..1318663 1 NC_006905.1 IPR002052: N-6 Adenine-specific DNA methylase; DNA adenine methylase 1318663 fdM 321314001478 fdM Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA adenine methylase YP_216189.1 1318010 D 321314 CDS YP_216190.1 62179773 1318660..1319049 1 NC_006905.1 IPR008822: Endodeoxyribonuclease RusA; crossover junction endodeoxyribonuclease 1319049 rusA 321314001479 rusA Salmonella enterica subsp. enterica serovar Choleraesuis str. crossover junction endodeoxyribonuclease YP_216190.1 1318660 D 321314 CDS YP_216191.1 62179774 1319066..1319926 1 NC_006905.1 hypothetical protein 1319926 321314001480 SC1204 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216191.1 1319066 D 321314 CDS YP_216192.1 62179775 1319934..1320923 1 NC_006905.1 hypothetical protein 1320923 ydfU 321314001481 ydfU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216192.1 1319934 D 321314 CDS YP_216193.1 62179776 1320938..1321516 1 NC_006905.1 hypothetical protein 1321516 321314001482 SC1206 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216193.1 1320938 D 321314 CDS YP_216194.1 62179777 1321742..1322161 1 NC_006905.1 hypothetical protein 1322161 321314001483 SC1207 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216194.1 1321742 D 321314 CDS YP_216195.1 62179778 1322370..1322552 1 NC_006905.1 IPR001091: Site-specific DNA-methyltransferase (cytosine-N4-specific); hypothetical protein 1322552 321314001484 SC1208 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216195.1 1322370 D 321314 CDS YP_216196.1 62179779 1322662..1323051 1 NC_006905.1 prophage membrane protein 1323051 321314001485 SC1209 Salmonella enterica subsp. enterica serovar Choleraesuis str. prophage membrane protein YP_216196.1 1322662 D 321314 CDS YP_216197.1 62179780 1323038..1323319 1 NC_006905.1 prophage membrane protein 1323319 321314001486 SC1210 Salmonella enterica subsp. enterica serovar Choleraesuis str. prophage membrane protein YP_216197.1 1323038 D 321314 CDS YP_216198.1 62179781 1323319..1323933 1 NC_006905.1 Fels-1 prophage chitinase 1323933 321314001487 SC1211 Salmonella enterica subsp. enterica serovar Choleraesuis str. Fels-1 prophage chitinase YP_216198.1 1323319 D 321314 CDS YP_216199.1 62179782 1323930..1324472 1 NC_006905.1 protein gp55 1324472 VG55 321314001488 VG55 Salmonella enterica subsp. enterica serovar Choleraesuis str. protein gp55 YP_216199.1 1323930 D 321314 CDS YP_216200.1 62179783 1324527..1325078 1 NC_006905.1 hypothetical protein 1325078 321314001489 SC1213 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216200.1 1324527 D 321314 CDS YP_216201.1 62179784 1325337..1325882 1 NC_006905.1 similar to DNA packaging protein Nu1 of phage 21; Gifsy-1 prophage DNA packaging protein 1325882 terS 321314001490 terS Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage DNA packaging protein YP_216201.1 1325337 D 321314 CDS YP_216202.1 62179785 1325854..1327785 1 NC_006905.1 similar to terminase large chain gp2 of N15; Gifsy-1 prophage terminase large chaing gp2 1327785 terL 321314001491 terL Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage terminase large chaing gp2 YP_216202.1 1325854 D 321314 CDS YP_216203.1 62179786 1327769..1327972 1 NC_006905.1 similar to head to tail joining protein; IPR004174: Head-to-tail joining protein W, gpW; Gifsy-1 prophage head to tail joining protein 1327972 vhtJ 321314001492 vhtJ Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage head to tail joining protein YP_216203.1 1327769 D 321314 CDS YP_216204.1 62179787 1327969..1329549 1 NC_006905.1 similar to head-tail preconnector gp4 of phage 21; Gifsy-1 prophage head-tail preconnector gp4 1329549 vgpW 321314001493 vgpW Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage head-tail preconnector gp4 YP_216204.1 1327969 D 321314 CDS YP_216205.1 62179788 1329539..1331035 1 NC_006905.1 similar to head-tail preconnector gp5 of phage 21; IPR002142: Peptidase U7; Gifsy-1 prophage head-tail preconnector gp5 1331035 vg05 321314001494 vg05 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage head-tail preconnector gp5 YP_216205.1 1329539 D 321314 CDS YP_216206.1 62179789 1331048..1331395 1 NC_006905.1 similar to head protein gpshp of phage 21; IPR004195: Bacteriophage lambda head decoration protein D, HDPD; Gifsy-1 prophage head protein gpshp 1331395 hdpD 321314001495 hdpD Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage head protein gpshp YP_216206.1 1331048 D 321314 CDS YP_216207.1 62179790 1331450..1332478 1 NC_006905.1 similar to head protein gp7 of phage 21; Gifsy-1 prophage head protein gp7 1332478 321314001496 SC1220 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage head protein gp7 YP_216207.1 1331450 D 321314 CDS YP_216208.1 62179791 1332536..1332895 1 NC_006905.1 similar to DNA packaging protein gp9 of phage N14; Gifsy-1 prophage DNA packaging protein 1332895 vgp7 321314001497 vgp7 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage DNA packaging protein YP_216208.1 1332536 D 321314 CDS YP_216209.1 62179792 1332906..1333289 1 NC_006905.1 similar to minor capsid protein FII of phage N15; Gifsy-1 prophage minor capsid protein FII 1333289 mcpF 321314001498 mcpF Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage minor capsid protein FII YP_216209.1 1332906 D 321314 CDS YP_216210.1 62179793 complement(1333322..1334452) 1 NC_006905.1 Gifsy-1 prophage GlpA 1334452 gipA 321314001499 gipA Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage GlpA YP_216210.1 1333322 R 321314 CDS YP_216211.1 62179794 1334558..1335136 1 NC_006905.1 similar to minor tail protein Z; Gifsy-1 prophagei VmtZ 1335136 vmtZ 321314001500 vmtZ Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophagei VmtZ YP_216211.1 1334558 D 321314 CDS YP_216212.1 62179795 1335133..1335534 1 NC_006905.1 Gifsy-1 prophage VmtU 1335534 vmtU 321314001501 vmtU Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage VmtU YP_216212.1 1335133 D 321314 CDS YP_216213.1 62179796 1335545..1336288 1 NC_006905.1 similar to major tail protein; Gifsy-1 prophage VmtV 1336288 vmtV 321314001502 vmtV Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage VmtV YP_216213.1 1335545 D 321314 CDS YP_216214.1 62179797 1336339..1336734 1 NC_006905.1 Gifsy-1 prophage minor tail protein 1336734 321314001503 SC1227 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage minor tail protein YP_216214.1 1336339 D 321314 CDS YP_216215.1 62179798 1336755..1337069 1 NC_006905.1 similar to minor tail protein; Gifsy-1 prophage VmtT 1337069 vmtT 321314001504 vmtT Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage VmtT YP_216215.1 1336755 D 321314 CDS YP_216216.1 62179799 1337041..1340082 1 NC_006905.1 similar to phage tail component H; Gifsy-1 prophage VmtH 1340082 vmtH 321314001505 vmtH Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage VmtH YP_216216.1 1337041 D 321314 CDS YP_216217.1 62179800 1340085..1340414 1 NC_006905.1 similar to phage tail component M; Gifsy-1 prophage VmtM 1340414 vmtM 321314001506 vmtM Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage VmtM YP_216217.1 1340085 D 321314 CDS YP_216218.1 62179801 1340424..1341122 1 NC_006905.1 similar to phage tail component L; Gifsy-1 prophage VmtL 1341122 vmtL 321314001507 vmtL Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage VmtL YP_216218.1 1340424 D 321314 CDS YP_216219.1 62179802 1341312..1341866 1 NC_006905.1 similar to tail assembly protein K in phage lambda; Gifsy-1 prophage VtaK 1341866 vtaK 321314001508 vtaK Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage VtaK YP_216219.1 1341312 D 321314 CDS YP_216220.1 62179803 1341905..1342411 1 NC_006905.1 similar to tail assembly protein I in phage lambda; Gifsy-1 prophage VtiI 1342411 vtiI 321314001509 vtiI Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage VtiI YP_216220.1 1341905 D 321314 CDS YP_216221.1 62179804 1342474..1345836 1 NC_006905.1 similar to host specificity protein-J in phage lambda; Gifsy-1 prophage VhsJ 1345836 vhsJ 321314001510 vhsJ Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage VhsJ YP_216221.1 1342474 D 321314 CDS YP_216222.1 62179805 1345875..1346117 1 NC_006905.1 hypothetical protein 1346117 321314001511 SC1235 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216222.1 1345875 D 321314 CDS YP_216223.1 62179806 1346171..1348849 1 NC_006905.1 IPR000104: Antifreeze protein, type I; side tail fiber protein 1348849 stf 321314001512 stf Salmonella enterica subsp. enterica serovar Choleraesuis str. side tail fiber protein YP_216223.1 1346171 D 321314 CDS YP_216227.1 62179810 1350481..1350789 1 NC_006905.1 hypothetical protein 1350789 321314001513 SC1240 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216227.1 1350481 D 321314 CDS YP_216228.1 62179811 complement(1350920..1351990) 1 NC_006905.1 SopB protein 1351990 sopB 321314001514 sopB Salmonella enterica subsp. enterica serovar Choleraesuis str. SopB protein YP_216228.1 1350920 R 321314 CDS YP_216229.1 62179812 1351955..1352248 1 NC_006905.1 hypothetical protein 1352248 321314001515 SC1242 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216229.1 1351955 D 321314 CDS YP_216230.1 62179813 complement(1352985..1354673) 1 NC_006905.1 IPR000914: Bacterial extracellular solute-binding protein, family 5; periplasmic murein peptide-binding protein precurs 1354673 mppA 321314001516 mppA Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic murein peptide-binding protein precurs YP_216230.1 1352985 R 321314 CDS YP_216231.1 62179814 complement(1354892..1355857) 1 NC_006905.1 hypothetical protein 1355857 321314001517 SC1244 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216231.1 1354892 R 321314 CDS YP_216232.1 62179815 1355902..1356051 1 NC_006905.1 hypothetical protein 1356051 321314001518 SC1245 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216232.1 1355902 D 321314 CDS YP_216233.1 62179816 complement(1356605..1356958) 1 NC_006905.1 hypothetical protein 1356958 321314001519 SC1246 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216233.1 1356605 R 321314 CDS YP_216234.1 62179817 1357089..1357265 1 NC_006905.1 isocitrate dehydrogenase 1357265 icdA 321314001520 icdA Salmonella enterica subsp. enterica serovar Choleraesuis str. isocitrate dehydrogenase YP_216234.1 1357089 D 321314 CDS YP_216235.1 62179818 1357713..1358798 1 NC_006905.1 hypothetical protein 1358798 321314001521 SC1248 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216235.1 1357713 D 321314 CDS YP_216236.1 62179819 1358991..1359317 1 NC_006905.1 hypothetical protein 1359317 321314001522 SC1249 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216236.1 1358991 D 321314 CDS YP_216237.1 62179820 complement(1359286..1359501) 1 NC_006905.1 hypothetical protein 1359501 321314001523 SC1250 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216237.1 1359286 R 321314 CDS YP_216238.1 62179821 complement(1359823..1360611) 1 NC_006905.1 envelope lipoprotein 1360611 envF 321314001524 envF Salmonella enterica subsp. enterica serovar Choleraesuis str. envelope lipoprotein YP_216238.1 1359823 R 321314 CDS YP_216239.1 62179822 complement(1361101..1361340) 1 NC_006905.1 macrophage survival gene; reduced mouse virulence 1361340 msgA 321314001525 msgA Salmonella enterica subsp. enterica serovar Choleraesuis str. macrophage survival gene; reduced mouse virulence YP_216239.1 1361101 R 321314 CDS YP_216240.1 62179823 complement(1361530..1362051) 1 NC_006905.1 IPR000772: Ricin B lectin domain; envelope protein 1362051 envE 321314001526 envE Salmonella enterica subsp. enterica serovar Choleraesuis str. envelope protein YP_216240.1 1361530 R 321314 CDS YP_216241.1 62179824 complement(1362466..1362678) 1 NC_006905.1 cold shock protein-like protein 1362678 cspH 321314001527 cspH Salmonella enterica subsp. enterica serovar Choleraesuis str. cold shock protein-like protein YP_216241.1 1362466 R 321314 CDS YP_216242.1 62179825 complement(1362810..1363139) 1 NC_006905.1 PhoP regulated protein 1363139 pagD 321314001528 pagD Salmonella enterica subsp. enterica serovar Choleraesuis str. PhoP regulated protein YP_216242.1 1362810 R 321314 CDS YP_216243.1 62179826 1363885..1364442 1 NC_006905.1 IPR000758: Virulence-related outer membrane protein; PhoP regulated protein: reduced macrophage survival 1364442 pagC 321314001530 pagC Salmonella enterica subsp. enterica serovar Choleraesuis str. PhoP regulated protein: reduced macrophage survival YP_216243.1 1363885 D 321314 CDS YP_216244.1 62179827 complement(1365664..1366008) 1 NC_006905.1 PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1366008 321314001532 SC1257 Salmonella enterica subsp. enterica serovar Choleraesuis str. lysozyme inhibitor YP_216244.1 1365664 R 321314 CDS YP_216247.1 62179830 1366386..1366511 1 NC_006905.1 lipoprotein 1366511 321314001533 SC1260 Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein YP_216247.1 1366386 D 321314 CDS YP_216248.1 62179831 complement(1366643..1366816) 1 NC_006905.1 hypothetical protein 1366816 321314001534 SC1261 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216248.1 1366643 R 321314 CDS YP_216249.1 62179832 1367132..1367602 1 NC_006905.1 IPR002068: Heat shock protein Hsp20; molecular chaperone 1367602 ibp 321314001535 ibp Salmonella enterica subsp. enterica serovar Choleraesuis str. molecular chaperone YP_216249.1 1367132 D 321314 CDS YP_216250.1 62179833 complement(1367711..1367860) 1 NC_006905.1 inner membrane protein 1367860 321314001536 SC1263 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216250.1 1367711 R 321314 CDS YP_216251.1 62179834 1367941..1368984 1 NC_006905.1 hypothetical protein 1368984 321314001537 SC1264 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216251.1 1367941 D 321314 CDS YP_216252.1 62179835 complement(1369069..1369596) 1 NC_006905.1 inner membrane protein 1369596 321314001538 SC1265 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216252.1 1369069 R 321314 CDS YP_216253.1 62179836 complement(1369745..1370059) 1 NC_006905.1 outer membrane lipoprotein 1370059 321314001539 SC1266 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_216253.1 1369745 R 321314 CDS YP_216254.1 62179837 1370741..1372381 1 NC_006905.1 ABC transporter substrate-binding protein 1372381 oxd6A 321314001540 oxd6A Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter substrate-binding protein YP_216254.1 1370741 D 321314 CDS YP_216255.1 62179838 1372378..1373355 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC transporter 1373355 oxd6B 321314001541 oxd6B Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter YP_216255.1 1372378 D 321314 CDS YP_216256.1 62179839 1373345..1374157 1 NC_006905.1 ABC transporter 1374157 oxd6C 321314001542 oxd6C Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter YP_216256.1 1373345 D 321314 CDS YP_216257.1 62179840 1374151..1374948 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter ATPase 1374948 oxd6D 321314001543 oxd6D Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATPase YP_216257.1 1374151 D 321314 CDS YP_216258.1 62179841 1374942..1375532 1 NC_006905.1 IPR003439: ABC transporter; ABC transporter ATPase 1375532 321314001544 SC1271 Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATPase YP_216258.1 1374942 D 321314 CDS YP_216259.1 62179842 complement(1375614..1376747) 1 NC_006905.1 hypothetical protein 1376747 oxd6E 321314001545 oxd6E Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216259.1 1375614 R 321314 CDS YP_216260.1 62179843 1376941..1377267 1 NC_006905.1 hypothetical protein 1377267 321314001546 SC1273 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216260.1 1376941 D 321314 CDS YP_216261.1 62179844 1377461..1378111 1 NC_006905.1 hypothetical protein 1378111 yodA 321314001548 yodA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216261.1 1377461 D 321314 CDS YP_216262.1 62179845 1378220..1379008 1 NC_006905.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1379008 aadA 321314001549 aadA Salmonella enterica subsp. enterica serovar Choleraesuis str. aminoglycoside resistance protein YP_216262.1 1378220 D 321314 CDS YP_216263.1 62179846 1379099..1379746 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; response regulator 1379746 321314001550 SC1276 Salmonella enterica subsp. enterica serovar Choleraesuis str. response regulator YP_216263.1 1379099 D 321314 CDS YP_216264.1 62179847 1379815..1380663 1 NC_006905.1 IPR000551: Bacterial regulatory protein, MerR family; transcriptional regulator 1380663 ycgE 321314001551 ycgE Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_216264.1 1379815 D 321314 CDS YP_216265.1 62179848 complement(1380918..1381166) 1 NC_006905.1 hypothetical protein 1381166 321314001552 SC1278 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216265.1 1380918 R 321314 CDS YP_216266.1 62179849 1381482..1382027 1 NC_006905.1 catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1382027 321314001553 SC1279 Salmonella enterica subsp. enterica serovar Choleraesuis str. chorismate mutase YP_216266.1 1381482 D 321314 CDS YP_216267.1 62179850 1382224..1382862 1 NC_006905.1 IPR001123: Lysine exporter protein (LYSE/YGGA); leucine export protein LeuE 1382862 yeaS 321314001554 yeaS Salmonella enterica subsp. enterica serovar Choleraesuis str. leucine export protein LeuE YP_216267.1 1382224 D 321314 CDS YP_216268.1 62179851 1383035..1383397 1 NC_006905.1 hypothetical protein 1383397 yeaR 321314001555 yeaR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216268.1 1383035 D 321314 CDS YP_216269.1 62179852 1383400..1383582 1 NC_006905.1 hypothetical protein 1383582 yoaG 321314001556 yoaG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216269.1 1383400 D 321314 CDS YP_216270.1 62179853 1383812..1384453 1 NC_006905.1 hypothetical protein 1384453 nor 321314001557 nor Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216270.1 1383812 D 321314 CDS YP_216271.1 62179854 1384574..1384759 1 NC_006905.1 hypothetical protein 1384759 321314001558 SC1284 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216271.1 1384574 D 321314 CDS YP_216272.1 62179855 1384767..1385015 1 NC_006905.1 hypothetical protein 1385015 yeaQ 321314001559 yeaQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216272.1 1384767 D 321314 CDS YP_216273.1 62179856 1385448..1385699 1 NC_006905.1 hemolysin 1385699 yaoF 321314001560 yaoF Salmonella enterica subsp. enterica serovar Choleraesuis str. hemolysin YP_216273.1 1385448 D 321314 CDS YP_216274.1 62179857 1385768..1386079 1 NC_006905.1 hypothetical protein 1386079 321314001561 SC1287 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216274.1 1385768 D 321314 CDS YP_216275.1 62179858 complement(1386065..1386412) 1 NC_006905.1 hypothetical protein 1386412 yeaO 321314001562 yeaO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216275.1 1386065 R 321314 CDS YP_216276.1 62179859 complement(1386531..1387715) 1 NC_006905.1 IPR007114: Major facilitator superfamily; MFS family transporter 1387715 yeaN 321314001563 yeaN Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter YP_216276.1 1386531 R 321314 CDS YP_216277.1 62179860 1387816..1388610 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 1388610 yeaM 321314001564 yeaM Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_216277.1 1387816 D 321314 CDS YP_216278.1 62179861 complement(1388590..1389036) 1 NC_006905.1 hypothetical protein 1389036 yeaL 321314001565 yeaL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216278.1 1388590 R 321314 CDS YP_216279.1 62179862 1389023..1389175 1 NC_006905.1 hypothetical protein 1389175 321314001566 SC1292 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216279.1 1389023 D 321314 CDS YP_216280.1 62179863 1389206..1389343 1 NC_006905.1 inner membrane protein 1389343 321314001567 SC1293 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216280.1 1389206 D 321314 CDS YP_216281.1 62179864 complement(1389340..1389867) 1 NC_006905.1 hypothetical protein 1389867 yeaK 321314001568 yeaK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216281.1 1389340 R 321314 CDS YP_216282.1 62179865 complement(1389908..1391401) 1 NC_006905.1 IPR000160: GGDEF; methyl-accepting chemotaxis protein 1391401 yeaJ 321314001569 yeaJ Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting chemotaxis protein YP_216282.1 1389908 R 321314 CDS YP_216283.1 62179866 complement(1392042..1393328) 1 NC_006905.1 IPR006698: Protein of unknown function DUF444; hypothetical protein 1393328 yeaH 321314001570 yeaH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216283.1 1392042 R 321314 CDS YP_216284.1 62179867 complement(1393451..1395415) 1 NC_006905.1 hypothetical protein 1395415 yeaG 321314001571 yeaG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216284.1 1393451 R 321314 CDS YP_216285.1 62179868 1395812..1396558 1 NC_006905.1 scaffolding protein for murein-synthesizing holoenzyme 1396558 mipA 321314001572 mipA Salmonella enterica subsp. enterica serovar Choleraesuis str. scaffolding protein for murein-synthesizing holoenzyme YP_216285.1 1395812 D 321314 CDS YP_216286.1 62179869 1396848..1398044 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; arylsulfatase 1398044 chuR 321314001573 chuR Salmonella enterica subsp. enterica serovar Choleraesuis str. arylsulfatase YP_216286.1 1396848 D 321314 CDS YP_216287.1 62179870 1398141..1398998 1 NC_006905.1 IPR001395: Aldo/keto reductase; aldehyde reductase 1398998 yeaE 321314001574 yeaE Salmonella enterica subsp. enterica serovar Choleraesuis str. aldehyde reductase YP_216287.1 1398141 D 321314 CDS YP_216288.1 62179871 complement(1399097..1399981) 1 NC_006905.1 aldose 1-epimerase 1399981 yeaD 321314001575 yeaD Salmonella enterica subsp. enterica serovar Choleraesuis str. aldose 1-epimerase YP_216288.1 1399097 R 321314 CDS YP_216289.1 62179872 complement(1399981..1400295) 1 NC_006905.1 hypothetical protein 1400295 321314001576 SC1302 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216289.1 1399981 R 321314 CDS YP_216290.1 62179873 complement(1400314..1401318) 1 NC_006905.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 1401318 gapA 321314001577 gapA Salmonella enterica subsp. enterica serovar Choleraesuis str. glyceraldehyde-3-phosphate dehydrogenase YP_216290.1 1400314 R 321314 CDS YP_216291.1 62179874 1401621..1402064 1 NC_006905.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1402064 yeaA 321314001578 yeaA Salmonella enterica subsp. enterica serovar Choleraesuis str. methionine sulfoxide reductase B YP_216291.1 1401621 D 321314 CDS YP_216292.1 62179875 1402106..1402384 1 NC_006905.1 hypothetical protein 1402384 yeaC 321314001579 yeaC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216292.1 1402106 D 321314 CDS YP_216293.1 62179876 complement(1402772..1403002) 1 NC_006905.1 IPR001579: Glycoside hydrolase, chitinase active site; hypothetical protein 1403002 321314001580 SC1306 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216293.1 1402772 R 321314 CDS YP_216294.1 62179877 1403277..1404353 1 NC_006905.1 IPR002328: Zinc-containing alcohol dehydrogenase; hypothetical protein 1404353 ydjL 321314001581 ydjL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216294.1 1403277 D 321314 CDS YP_216295.1 62179878 1404380..1405759 1 NC_006905.1 IPR007114: Major facilitator superfamily; metabolite transport protein 1405759 ydjK 321314001582 ydjK Salmonella enterica subsp. enterica serovar Choleraesuis str. metabolite transport protein YP_216295.1 1404380 D 321314 CDS YP_216296.1 62179879 1405770..1406813 1 NC_006905.1 IPR000205: NAD-binding site; IPR002328: Zinc-containing alcohol dehydrogenase; hypothetical protein 1406813 ydiJ 321314001583 ydiJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216296.1 1405770 D 321314 CDS YP_216297.1 62179880 1406835..1407671 1 NC_006905.1 IPR000771: Ketose-bisphosphate aldolase, class-II; hypothetical protein 1407671 ydjI 321314001584 ydjI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216297.1 1406835 D 321314 CDS YP_216298.1 62179881 1407622..1408623 1 NC_006905.1 IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; sugar kinase ydjH 1408623 ydjH 321314001585 ydjH Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar kinase ydjH YP_216298.1 1407622 D 321314 CDS YP_216299.1 62179882 1408639..1409616 1 NC_006905.1 IPR001395: Aldo/keto reductase; oxidoreductase ydjG 1409616 ydjG 321314001586 ydjG Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase ydjG YP_216299.1 1408639 D 321314 CDS YP_216300.1 62179883 1409746..1410504 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; transcriptional regulator YdjF 1410504 ydjF 321314001587 ydjF Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YdjF YP_216300.1 1409746 D 321314 CDS YP_216301.1 62179884 1410640..1411998 1 NC_006905.1 IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; metabolite transport protein 1411998 ydjE 321314001588 ydjE Salmonella enterica subsp. enterica serovar Choleraesuis str. metabolite transport protein YP_216301.1 1410640 D 321314 CDS YP_216302.1 62179885 complement(1412134..1412757) 1 NC_006905.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase 1412757 pncA 321314001589 pncA Salmonella enterica subsp. enterica serovar Choleraesuis str. nicotinamidase/pyrazinamidase YP_216302.1 1412134 R 321314 CDS YP_216303.1 62179886 complement(1412784..1413872) 1 NC_006905.1 converts asparagine to aspartate and ammonia; asparaginase 1413872 ansA 321314001590 ansA Salmonella enterica subsp. enterica serovar Choleraesuis str. asparaginase YP_216303.1 1412784 R 321314 CDS YP_216304.1 62179887 complement(1413896..1415752) 1 NC_006905.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 1415752 sppA 321314001591 sppA Salmonella enterica subsp. enterica serovar Choleraesuis str. protease 4 YP_216304.1 1413896 R 321314 CDS YP_216305.1 62179888 1415926..1416477 1 NC_006905.1 hypothetical protein 1416477 ydjA 321314001592 ydjA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216305.1 1415926 D 321314 CDS YP_216306.1 62179889 1416595..1417638 1 NC_006905.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1417638 selD 321314001593 selD Salmonella enterica subsp. enterica serovar Choleraesuis str. selenophosphate synthetase YP_216306.1 1416595 D 321314 CDS YP_216307.1 62179890 1417586..1419592 1 NC_006905.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1419592 topB 321314001594 topB Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA topoisomerase III YP_216307.1 1417586 D 321314 CDS YP_216308.1 62179891 complement(1419622..1420965) 1 NC_006905.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1420965 gdhA 321314001595 gdhA Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate dehydrogenase YP_216308.1 1419622 R 321314 CDS YP_216309.1 62179892 1421204..1421479 1 NC_006905.1 hypothetical protein 1421479 ynjH 321314001596 ynjH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216309.1 1421204 D 321314 CDS YP_216310.1 62179893 complement(1421439..1421855) 1 NC_006905.1 IPR000086: NUDIX hydrolase; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1421855 nudG 321314001597 nudG Salmonella enterica subsp. enterica serovar Choleraesuis str. pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_216310.1 1421439 R 321314 CDS YP_216311.1 62179894 complement(1421928..1422734) 1 NC_006905.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1422734 xthA 321314001598 xthA Salmonella enterica subsp. enterica serovar Choleraesuis str. exonuclease III YP_216311.1 1421928 R 321314 CDS YP_216312.1 62179895 1422869..1423048 1 NC_006905.1 hypothetical protein 1423048 321314001599 SC1325 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216312.1 1422869 D 321314 CDS YP_216313.1 62179896 1423180..1424406 1 NC_006905.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1424406 argD 321314001600 argD Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional succinylornithine transaminase/acetylornithine transaminase YP_216313.1 1423180 D 321314 CDS YP_216314.1 62179897 1424397..1425923 1 NC_006905.1 arginine succinyltransferase 1425923 astA 321314001601 astA Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine succinyltransferase YP_216314.1 1424397 D 321314 CDS YP_216315.1 62179898 1425916..1426884 1 NC_006905.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1426884 astE 321314001602 astE Salmonella enterica subsp. enterica serovar Choleraesuis str. succinylglutamate desuccinylase YP_216315.1 1425916 D 321314 CDS YP_216316.1 62179899 1427220..1427705 1 NC_006905.1 periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1427705 spy 321314001603 spy Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216316.1 1427220 D 321314 CDS YP_216317.1 62179900 complement(1427780..1428688) 1 NC_006905.1 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease 1428688 cho 321314001604 cho Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleotide excision repair endonuclease YP_216317.1 1427780 R 321314 CDS YP_216318.1 62179901 complement(1428782..1429609) 1 NC_006905.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1429609 nadE 321314001605 nadE Salmonella enterica subsp. enterica serovar Choleraesuis str. NAD synthetase YP_216318.1 1428782 R 321314 CDS YP_216319.1 62179902 1429828..1430169 1 NC_006905.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1430169 osmE 321314001606 osmE Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator OsmE YP_216319.1 1429828 D 321314 CDS YP_216320.1 62179903 1430470..1430790 1 NC_006905.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1430790 celA 321314001607 celA Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB YP_216320.1 1430470 D 321314 CDS YP_216321.1 62179904 1430873..1432231 1 NC_006905.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1432231 celB 321314001608 celB Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC YP_216321.1 1430873 D 321314 CDS YP_216322.1 62179905 1432282..1432629 1 NC_006905.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1432629 celC 321314001609 celC Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA YP_216322.1 1432282 D 321314 CDS YP_216323.1 62179906 1432640..1433482 1 NC_006905.1 represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1433482 celD 321314001610 celD Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator ChbR YP_216323.1 1432640 D 321314 CDS YP_216324.1 62179907 1433607..1434962 1 NC_006905.1 IPR001088: Glycoside hydrolase, family 4; phospho-beta-glucosidase 1434962 celF 321314001611 celF Salmonella enterica subsp. enterica serovar Choleraesuis str. phospho-beta-glucosidase YP_216324.1 1433607 D 321314 CDS YP_216325.1 62179908 1434975..1435733 1 NC_006905.1 hypothetical protein 1435733 celG 321314001612 celG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216325.1 1434975 D 321314 CDS YP_216326.1 62179909 complement(1435777..1438029) 1 NC_006905.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 1438029 katE 321314001613 katE Salmonella enterica subsp. enterica serovar Choleraesuis str. hydroperoxidase II YP_216326.1 1435777 R 321314 CDS YP_216327.1 62179910 1438394..1438636 1 NC_006905.1 cell division modulator 1438636 cedA 321314001614 cedA Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division modulator YP_216327.1 1438394 D 321314 CDS YP_216328.1 62179911 complement(1438739..1440130) 1 NC_006905.1 IPR001991: Sodium:dicarboxylate symporter; hypothetical protein 1440130 ydjN 321314001615 ydjN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216328.1 1438739 R 321314 CDS YP_216329.2 162139593 complement(1440267..1440854) 1 NC_006905.1 IPR007404: Predicted membrane-bound metal-dependent hydrolase; hypothetical protein 1440854 ydjM 321314001616 ydjM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216329.2 1440267 R 321314 CDS YP_216330.1 62179913 complement(1441004..1441672) 1 NC_006905.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 1441672 yniC 321314001617 yniC Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-deoxyglucose-6-phosphatase YP_216330.1 1441004 R 321314 CDS YP_216331.1 62179914 1441821..1442357 1 NC_006905.1 hypothetical protein 1442357 yniB 321314001618 yniB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216331.1 1441821 D 321314 CDS YP_216332.1 62179915 complement(1442400..1443260) 1 NC_006905.1 hypothetical protein 1443260 yniA 321314001619 yniA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216332.1 1442400 R 321314 CDS YP_216333.1 62179916 complement(1443367..1443657) 1 NC_006905.1 hypothetical protein 1443657 ydiZ 321314001620 ydiZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216333.1 1443367 R 321314 CDS YP_216334.1 62179917 complement(1443754..1444686) 1 NC_006905.1 IPR002173: Carbohydrate kinase, PfkB; 6-phosphofructokinase 1444686 pfkB 321314001621 pfkB Salmonella enterica subsp. enterica serovar Choleraesuis str. 6-phosphofructokinase YP_216334.1 1443754 R 321314 CDS YP_216335.1 62179918 1444975..1445733 1 NC_006905.1 salt-induced outer membrane protein 1445733 ydiY 321314001622 ydiY Salmonella enterica subsp. enterica serovar Choleraesuis str. salt-induced outer membrane protein YP_216335.1 1444975 D 321314 CDS YP_216336.1 62179919 complement(1445782..1446741) 1 NC_006905.1 outer membrane protein 1446741 321314001623 SC1349 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_216336.1 1445782 R 321314 CDS YP_216338.1 62179921 1447194..1448048 1 NC_006905.1 IPR001604: DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 1448048 nucA 321314001625 nucA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA/RNA non-specific endonuclease YP_216338.1 1447194 D 321314 CDS YP_216339.1 62179922 1448308..1450236 1 NC_006905.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1450236 thrS 321314001626 thrS Salmonella enterica subsp. enterica serovar Choleraesuis str. threonyl-tRNA synthetase YP_216339.1 1448308 D 321314 CDS YP_216340.1 62179923 1450348..1450782 1 NC_006905.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1450782 infC 321314001627 infC Salmonella enterica subsp. enterica serovar Choleraesuis str. translation initiation factor IF-3 YP_216340.1 1450348 D 321314 CDS YP_216341.2 162139592 1450878..1451075 1 NC_006905.1 IPR001706: Ribosomal protein L35; 50S ribosomal protein L35 1451075 rpmI 321314001628 rpmI Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L35 YP_216341.2 1450878 D 321314 CDS YP_216342.1 62179925 1451126..1451482 1 NC_006905.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1451482 rplT 321314001629 rplT Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L20 YP_216342.1 1451126 D 321314 CDS YP_216343.1 62179926 1451784..1452767 1 NC_006905.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1452767 pheS 321314001630 pheS Salmonella enterica subsp. enterica serovar Choleraesuis str. phenylalanyl-tRNA synthetase subunit alpha YP_216343.1 1451784 D 321314 CDS YP_216344.1 62179927 1452783..1455170 1 NC_006905.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1455170 pheT 321314001631 pheT Salmonella enterica subsp. enterica serovar Choleraesuis str. phenylalanyl-tRNA synthetase subunit beta YP_216344.1 1452783 D 321314 CDS YP_216345.1 62179928 1455175..1455474 1 NC_006905.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1455474 ihfA 321314001632 ihfA Salmonella enterica subsp. enterica serovar Choleraesuis str. integration host factor subunit alpha YP_216345.1 1455175 D 321314 CDS YP_216346.1 62179929 1455677..1456657 1 NC_006905.1 with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1456657 btuC 321314001633 btuC Salmonella enterica subsp. enterica serovar Choleraesuis str. vtamin B12-transporter permease YP_216346.1 1455677 D 321314 CDS YP_216347.1 62179930 1456749..1457300 1 NC_006905.1 similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; glutathione peroxidase 1457300 btuE 321314001634 btuE Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione peroxidase YP_216347.1 1456749 D 321314 CDS YP_216348.1 62179931 1457300..1458049 1 NC_006905.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1458049 btuD 321314001635 btuD Salmonella enterica subsp. enterica serovar Choleraesuis str. vitamin B12-transporter ATPase YP_216348.1 1457300 D 321314 CDS YP_216349.1 62179932 1458126..1458590 1 NC_006905.1 lipoprotein 1458590 nlpC 321314001636 nlpC Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein YP_216349.1 1458126 D 321314 CDS YP_216350.1 62179933 1458904..1459617 1 NC_006905.1 diguanylate cyclase/phosphodiesterase domain-containing protein 1459617 ydiV 321314001637 ydiV Salmonella enterica subsp. enterica serovar Choleraesuis str. diguanylate cyclase/phosphodiesterase domain-containing protein YP_216350.1 1458904 D 321314 CDS YP_216351.1 62179934 1459679..1461121 1 NC_006905.1 hypothetical protein 1461121 ydiU 321314001638 ydiU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216351.1 1459679 D 321314 CDS YP_216352.1 62179935 complement(1461157..1461348) 1 NC_006905.1 hypothetical protein 1461348 ydiE 321314001639 ydiE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216352.1 1461157 R 321314 CDS YP_216353.1 62179936 complement(1461505..1462551) 1 NC_006905.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1462551 aroH 321314001640 aroH Salmonella enterica subsp. enterica serovar Choleraesuis str. phospho-2-dehydro-3-deoxyheptonate aldolase YP_216353.1 1461505 R 321314 CDS YP_216354.1 62179937 complement(1462707..1463540) 1 NC_006905.1 hypothetical protein 1463540 ydiA 321314001641 ydiA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216354.1 1462707 R 321314 CDS YP_216355.1 62179938 1463877..1466255 1 NC_006905.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1466255 pps 321314001642 pps Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoenolpyruvate synthase YP_216355.1 1463877 D 321314 CDS YP_216356.1 62179939 complement(1466297..1467982) 1 NC_006905.1 acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase 1467982 ydiD 321314001643 ydiD Salmonella enterica subsp. enterica serovar Choleraesuis str. short chain acyl-CoA synthetase YP_216356.1 1466297 R 321314 CDS YP_216357.1 62179940 complement(1468027..1468320) 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; ferredoxin 1468320 ydiT 321314001644 ydiT Salmonella enterica subsp. enterica serovar Choleraesuis str. ferredoxin YP_216357.1 1468027 R 321314 CDS YP_216358.1 62179941 complement(1468317..1469603) 1 NC_006905.1 IPR000205: NAD-binding site; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I; IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;IPR003042: Aromatic-ring hydroxylase; hypothetical protein 1469603 ydiS 321314001645 ydiS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216358.1 1468317 R 321314 CDS YP_216359.1 62179942 complement(1469660..1470595) 1 NC_006905.1 May play a role in a redox process; electron transfer flavoprotein subunit YdiR 1470595 ydiR 321314001646 ydiR Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transfer flavoprotein subunit YdiR YP_216359.1 1469660 R 321314 CDS YP_216360.1 62179943 complement(1470617..1471381) 1 NC_006905.1 YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; electron transfer flavoprotein YdiQ 1471381 ydiQ 321314001647 ydiQ Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transfer flavoprotein YdiQ YP_216360.1 1470617 R 321314 CDS YP_216361.1 62179944 1471844..1472734 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; IPR007113: Cupin domain; AraC family transcriptional regulator 1472734 ydiP 321314001648 ydiP Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_216361.1 1471844 D 321314 CDS YP_216362.1 62179945 complement(1472810..1473961) 1 NC_006905.1 may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase 1473961 ydiO 321314001649 ydiO Salmonella enterica subsp. enterica serovar Choleraesuis str. acyl-CoA dehydrogenase YP_216362.1 1472810 R 321314 CDS YP_216363.1 62179946 complement(1473975..1475570) 1 NC_006905.1 acetyl-CoA:acetoacetyl-CoA transferase subunit beta 1475570 ydiF 321314001650 ydiF Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl-CoA:acetoacetyl-CoA transferase subunit beta YP_216363.1 1473975 R 321314 CDS YP_216364.1 62179947 complement(1475725..1476483) 1 NC_006905.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 1476483 aroD 321314001651 aroD Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-dehydroquinate dehydratase YP_216364.1 1475725 R 321314 CDS YP_216365.1 62179948 complement(1476528..1477394) 1 NC_006905.1 YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase 1477394 aroE 321314001652 aroE Salmonella enterica subsp. enterica serovar Choleraesuis str. quinate/shikimate dehydrogenase YP_216365.1 1476528 R 321314 CDS YP_216366.1 62179949 complement(1477461..1478696) 1 NC_006905.1 IPR007114: Major facilitator superfamily; MFS family transporter 1478696 ydiN 321314001653 ydiN Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter YP_216366.1 1477461 R 321314 CDS YP_216367.1 62179950 complement(1479060..1480271) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; IPR005828: General substrate transporter; IPR005829: Sugar transporter superfamily;IPR007114: Major facilitator superfamily; MFS family transporter 1480271 ydiM 321314001654 ydiM Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter YP_216367.1 1479060 R 321314 CDS YP_216368.1 62179951 complement(1480412..1480771) 1 NC_006905.1 hypothetical protein 1480771 ydiL 321314001655 ydiL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216368.1 1480412 R 321314 CDS YP_216369.1 62179952 complement(1480941..1481624) 1 NC_006905.1 integrase 1481624 yis2 321314001656 yis2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_216369.1 1480941 R 321314 CDS YP_216370.1 62179953 complement(1481795..1482196) 1 NC_006905.1 hypothetical protein 1482196 321314001657 SC1383 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216370.1 1481795 R 321314 CDS YP_216371.1 62179954 complement(1482543..1483661) 1 NC_006905.1 YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; inner membrane protein 1483661 ydiK 321314001658 ydiK Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216371.1 1482543 R 321314 CDS YP_216372.1 62179955 1483926..1486982 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; oxidase 1486982 ydiJ 321314001659 ydiJ Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidase YP_216372.1 1483926 D 321314 CDS YP_216373.1 62179956 1486979..1487389 1 NC_006905.1 IPR003736: Phenylacetic acid degradation-related protein; IPR006683: Thioesterase superfamily; hypothetical protein 1487389 ydiI 321314001660 ydiI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216373.1 1486979 D 321314 CDS YP_216374.1 62179957 1487449..1487676 1 NC_006905.1 hypothetical protein 1487676 ydiH 321314001661 ydiH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216374.1 1487449 D 321314 CDS YP_216375.1 62179958 complement(1487964..1489310) 1 NC_006905.1 IPR001991: Sodium:dicarboxylate symporter; Na+-dicarboxylate symporter 1489310 ydjN 321314001662 ydjN Salmonella enterica subsp. enterica serovar Choleraesuis str. Na+-dicarboxylate symporter YP_216375.1 1487964 R 321314 CDS YP_216376.1 62179959 1489737..1490105 1 NC_006905.1 functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1490105 sufA 321314001663 sufA Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-sulfur cluster assembly scaffold protein YP_216376.1 1489737 D 321314 CDS YP_216377.1 62179960 1490114..1491601 1 NC_006905.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 1491601 sufB 321314001664 sufB Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine desulfurase YP_216377.1 1490114 D 321314 CDS YP_216378.1 62179961 1491618..1492364 1 NC_006905.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1492364 sufC 321314001665 sufC Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine desulfurase YP_216378.1 1491618 D 321314 CDS YP_216379.1 62179962 1492339..1493610 1 NC_006905.1 with SufBC activates cysteine desulfurase SufS; cysteine desulfurase 1493610 sufD 321314001666 sufD Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine desulfurase YP_216379.1 1492339 D 321314 CDS YP_216380.1 62179963 1493607..1494827 1 NC_006905.1 catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1494827 sufS 321314001667 sufS Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional cysteine desulfurase/selenocysteine lyase YP_216380.1 1493607 D 321314 CDS YP_216381.1 62179964 1494840..1495256 1 NC_006905.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1495256 ynhA 321314001668 ynhA Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine desufuration protein SufE YP_216381.1 1494840 D 321314 CDS YP_216382.1 62179965 1495411..1496412 1 NC_006905.1 LysM domain-containing protein 1496412 ynhG 321314001669 ynhG Salmonella enterica subsp. enterica serovar Choleraesuis str. LysM domain-containing protein YP_216382.1 1495411 D 321314 CDS YP_216383.1 62179966 complement(1496478..1496717) 1 NC_006905.1 methyl-accepting chemotaxis protein 1496717 lppB 321314001670 lppB Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting chemotaxis protein YP_216383.1 1496478 R 321314 CDS YP_216384.2 162139591 complement(1496798..1497040) 1 NC_006905.1 methyl-accepting chemotaxis protein 1497040 lppB 321314001671 lppB Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting chemotaxis protein YP_216384.2 1496798 R 321314 CDS YP_216385.1 62179968 complement(1497123..1497359) 1 NC_006905.1 links outer and inner membranes; murein lipoprotein 1497359 lpp 321314001672 lpp Salmonella enterica subsp. enterica serovar Choleraesuis str. murein lipoprotein YP_216385.1 1497123 R 321314 CDS YP_216386.1 62179969 complement(1497670..1499082) 1 NC_006905.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1499082 pykF 321314001673 pykF Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate kinase YP_216386.1 1497670 R 321314 CDS YP_216387.1 62179970 complement(1499484..1500827) 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; amino acid permease 1500827 ycjj 321314001674 ycjj Salmonella enterica subsp. enterica serovar Choleraesuis str. amino acid permease YP_216387.1 1499484 R 321314 CDS YP_216388.1 62179971 complement(1500849..1501742) 1 NC_006905.1 IPR000379: Esterase/lipase/thioesterase; IPR002410: Prolyl aminopeptidase S33; hydrolase or acyltransferase 1501742 pip 321314001675 pip Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase or acyltransferase YP_216388.1 1500849 R 321314 CDS YP_216389.1 62179972 complement(1501801..1502538) 1 NC_006905.1 orf245; IPR003006: Immunoglobulin/major histocompatibility complex; hypothetical protein 1502538 321314001676 SC1402 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216389.1 1501801 R 321314 CDS YP_216390.1 62179973 complement(1502550..1503776) 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; DeoR family transcriptional regulator 1503776 rbsk 321314001677 rbsk Salmonella enterica subsp. enterica serovar Choleraesuis str. DeoR family transcriptional regulator YP_216390.1 1502550 R 321314 CDS YP_216391.1 62179974 complement(1504099..1507161) 1 NC_006905.1 tetrathionate reductase complex subunit A 1507161 ttrA 321314001678 ttrA Salmonella enterica subsp. enterica serovar Choleraesuis str. tetrathionate reductase complex subunit A YP_216391.1 1504099 R 321314 CDS YP_216392.1 62179975 complement(1507154..1508176) 1 NC_006905.1 tetrathionate reductase complex subunit C 1508176 ttrC 321314001679 ttrC Salmonella enterica subsp. enterica serovar Choleraesuis str. tetrathionate reductase complex subunit C YP_216392.1 1507154 R 321314 CDS YP_216393.1 62179976 complement(1508177..1508911) 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; tetrathionate reductase complex subunit B 1508911 ttrB 321314001680 ttrB Salmonella enterica subsp. enterica serovar Choleraesuis str. tetrathionate reductase complex subunit B YP_216393.1 1508177 R 321314 CDS YP_216394.1 62179977 1509093..1510871 1 NC_006905.1 IPR003594: ATP-binding region, ATPase-like; IPR003661: Histidine kinase A, N-terminal; IPR004358: Bacterial sensor protein, C-terminal;IPR005467: Histidine kinase; tetrathionate reductase complex: sensory transduction histidine kinase 1510871 ttrS 321314001681 ttrS Salmonella enterica subsp. enterica serovar Choleraesuis str. tetrathionate reductase complex: sensory transduction histidine kinase YP_216394.1 1509093 D 321314 CDS YP_216395.1 62179978 1510846..1511466 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; IPR001789: Response regulator receiver; tetrathionate reductase complex: response regulator 1511466 ttrR 321314001682 ttrR Salmonella enterica subsp. enterica serovar Choleraesuis str. tetrathionate reductase complex: response regulator YP_216395.1 1510846 D 321314 CDS YP_216396.1 62179979 1511513..1511776 1 NC_006905.1 orf70; hypothetical protein 1511776 321314001683 SC1409 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216396.1 1511513 D 321314 CDS YP_216397.1 62179980 complement(1511872..1512831) 1 NC_006905.1 orf319; inner membrane protein 1512831 321314001684 SC1410 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216397.1 1511872 R 321314 CDS YP_216398.1 62179981 complement(1513003..1513731) 1 NC_006905.1 orf242; IPR000551: Bacterial regulatory protein, MerR family; MerR family transcriptional regulator 1513731 321314001685 SC1411 Salmonella enterica subsp. enterica serovar Choleraesuis str. MerR family transcriptional regulator YP_216398.1 1513003 R 321314 CDS YP_216399.1 62179982 complement(1513910..1514548) 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; IPR001789: Response regulator receiver; secretion system transcriptonal activator 1514548 ssrB 321314001686 ssrB Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system transcriptonal activator YP_216399.1 1513910 R 321314 CDS YP_216400.1 62179983 complement(1514579..1517341) 1 NC_006905.1 IPR001789: Response regulator receiver; IPR003660: Histidine kinase, HAMP region; IPR004358: Bacterial sensor protein, C-terminal;IPR005467: Histidine kinase; secretion system regulator:sensor component 1517341 ssrA 321314001687 ssrA Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system regulator:sensor component YP_216400.1 1514579 R 321314 CDS YP_216401.1 62179984 1517742..1518143 1 NC_006905.1 secretion system apparatus protein SsaB 1518143 ssaB 321314001688 ssaB Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaB YP_216401.1 1517742 D 321314 CDS YP_216402.1 62179985 1518145..1519638 1 NC_006905.1 IPR001775: Bacterial general secretion pathway protein D; IPR003522: Type III secretion system outer membrane G protein; IPR004845: Bacterial type II secretion system protein D; secretion system apparatus protein SsaC 1519638 ssaC 321314001689 ssaC Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaC YP_216402.1 1518145 D 321314 CDS YP_216403.1 62179986 1519619..1520830 1 NC_006905.1 secretion system apparatus protein SsaD 1520830 ssaD 321314001690 ssaD Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaD YP_216403.1 1519619 D 321314 CDS YP_216404.1 62179987 1520838..1521080 1 NC_006905.1 secretion system effector protein SsaE 1521080 ssaE 321314001691 ssaE Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system effector protein SsaE YP_216404.1 1520838 D 321314 CDS YP_216405.1 62179988 1521289..1521615 1 NC_006905.1 secretion system effector protein SseA 1521615 sseA 321314001692 sseA Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system effector protein SseA YP_216405.1 1521289 D 321314 CDS YP_216406.1 62179989 1521622..1522212 1 NC_006905.1 secretion system effector protein SseB 1522212 sseB 321314001693 sseB Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system effector protein SseB YP_216406.1 1521622 D 321314 CDS YP_216407.1 62179990 1522209..1522682 1 NC_006905.1 IPR005415: Gram-negative bacterial type III secretion SycD chaperone; secretion system chaperone protein SscA 1522682 321314001694 SC1420 Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system chaperone protein SscA YP_216407.1 1522209 D 321314 CDS YP_216408.1 62179991 1522685..1524139 1 NC_006905.1 secretion system effector protein SseC 1524139 sseC 321314001695 sseC Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system effector protein SseC YP_216408.1 1522685 D 321314 CDS YP_216409.1 62179992 1524155..1524742 1 NC_006905.1 secretion system effector protein SseD 1524742 sseD 321314001696 sseD Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system effector protein SseD YP_216409.1 1524155 D 321314 CDS YP_216410.1 62179993 1524745..1525161 1 NC_006905.1 secretion system effector SseE 1525161 sseE 321314001697 sseE Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system effector SseE YP_216410.1 1524745 D 321314 CDS YP_216411.1 62179994 1525213..1525647 1 NC_006905.1 IPR001440: TPR repeat; secretion system chaperone protein SscB 1525647 321314001698 SC1424 Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system chaperone protein SscB YP_216411.1 1525213 D 321314 CDS YP_216412.1 62179995 1525663..1526445 1 NC_006905.1 secretion system effector protein SseF 1526445 sseF 321314001699 sseF Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system effector protein SseF YP_216412.1 1525663 D 321314 CDS YP_216413.1 62179996 1526442..1527131 1 NC_006905.1 secretion system effector protein SseG 1527131 sseG 321314001700 sseG Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system effector protein SseG YP_216413.1 1526442 D 321314 CDS YP_216414.1 62179997 1527174..1527440 1 NC_006905.1 secretion system apparatus protein SsaG 1527440 ssaG 321314001701 ssaG Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaG YP_216414.1 1527174 D 321314 CDS YP_216415.1 62179998 1527418..1527708 1 NC_006905.1 secretion system apparatus protein SsaH 1527708 ssaH 321314001702 ssaH Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaH YP_216415.1 1527418 D 321314 CDS YP_216416.1 62179999 1527720..1527968 1 NC_006905.1 secretion system apparatus protein SsaI 1527968 ssaI 321314001703 ssaI Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaI YP_216416.1 1527720 D 321314 CDS YP_216417.1 62180000 1527965..1528714 1 NC_006905.1 similar to the yscJ/mxiJ/prgK family of lipoproteins; IPR003282: Type III secretion system outer membrane K protein; IPR006182: Secretory protein YscJ/FliF; secretion system apparatus protein SsaJ 1528714 ssaJ 321314001704 ssaJ Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaJ YP_216417.1 1527965 D 321314 CDS YP_216418.1 62180001 1528732..1529280 1 NC_006905.1 hypothetical protein 1529280 321314001705 SC1431 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216418.1 1528732 D 321314 CDS YP_216419.1 62180002 1529277..1529951 1 NC_006905.1 secretion system apparatus protein SsaK 1529951 ssaK 321314001706 ssaK Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaK YP_216419.1 1529277 D 321314 CDS YP_216420.1 62180003 1529917..1530933 1 NC_006905.1 secretion system apparatus protein SsaL 1530933 ssaL 321314001707 ssaL Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaL YP_216420.1 1529917 D 321314 CDS YP_216421.1 62180004 1530991..1531359 1 NC_006905.1 secretion system apparatus protein SsaM 1531359 ssaM 321314001708 ssaM Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaM YP_216421.1 1530991 D 321314 CDS YP_216422.1 62180005 1531344..1533389 1 NC_006905.1 with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1533389 ssaV 321314001709 ssaV Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaV YP_216422.1 1531344 D 321314 CDS YP_216423.1 62180006 1533379..1534680 1 NC_006905.1 similar to the YscN family of proteins; type III secretion system ATPase 1534680 ssaN 321314001710 ssaN Salmonella enterica subsp. enterica serovar Choleraesuis str. type III secretion system ATPase YP_216423.1 1533379 D 321314 CDS YP_216424.1 62180007 1534629..1535060 1 NC_006905.1 secretion system apparatus protein SsaO 1535060 ssaO 321314001711 ssaO Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaO YP_216424.1 1534629 D 321314 CDS YP_216425.1 62180008 1535041..1535415 1 NC_006905.1 secretion system apparatus protein SsaP 1535415 ssaP 321314001712 ssaP Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaP YP_216425.1 1535041 D 321314 CDS YP_216426.1 62180009 1535396..1536364 1 NC_006905.1 IPR001172: Flagellar motor switch FliN protein; type III secretion system protein 1536364 ssaQ 321314001713 ssaQ Salmonella enterica subsp. enterica serovar Choleraesuis str. type III secretion system protein YP_216426.1 1535396 D 321314 CDS YP_216427.1 62180010 1536432..1537079 1 NC_006905.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1537079 ssaR 321314001714 ssaR Salmonella enterica subsp. enterica serovar Choleraesuis str. type III secretion system protein YP_216427.1 1536432 D 321314 CDS YP_216428.1 62180011 1537076..1537342 1 NC_006905.1 similar to YscS of the secretion system of Yersinia; secretion system apparatus protein SsaS 1537342 ssaS 321314001715 ssaS Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaS YP_216428.1 1537076 D 321314 CDS YP_216429.1 62180012 1537343..1538122 1 NC_006905.1 similar to YscT of the secretion system of Yersinia; IPR002010: Bacterial export protein, family 1; secretion system apparatus protein SsaT 1538122 ssaT 321314001716 ssaT Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaT YP_216429.1 1537343 D 321314 CDS YP_216430.1 62180013 1538119..1539177 1 NC_006905.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; secretion system apparatus protein SsaU 1539177 ssaU 321314001717 ssaU Salmonella enterica subsp. enterica serovar Choleraesuis str. secretion system apparatus protein SsaU YP_216430.1 1538119 D 321314 CDS YP_216431.1 62180014 complement(1539650..1541023) 1 NC_006905.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1541023 ydhE 321314001720 ydhE Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug efflux protein YP_216431.1 1539650 R 321314 CDS YP_216432.1 62180015 1541240..1541881 1 NC_006905.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1541881 ribE 321314001721 ribE Salmonella enterica subsp. enterica serovar Choleraesuis str. riboflavin synthase subunit alpha YP_216432.1 1541240 D 321314 CDS YP_216433.1 62180016 complement(1541923..1543071) 1 NC_006905.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 1543071 cfa 321314001722 cfa Salmonella enterica subsp. enterica serovar Choleraesuis str. cyclopropane-fatty-acyl-phospholipid synthase YP_216433.1 1541923 R 321314 CDS YP_216434.1 62180017 complement(1543361..1544566) 1 NC_006905.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 1544566 ydhC 321314001723 ydhC Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane transport protein YdhC YP_216434.1 1543361 R 321314 CDS YP_216435.1 62180018 1544679..1545611 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; DNA-binding transcriptional regulator 1545611 ydhB 321314001724 ydhB Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator YP_216435.1 1544679 D 321314 CDS YP_216436.1 62180019 complement(1545608..1546633) 1 NC_006905.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR 1546633 purR 321314001725 purR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional repressor PurR YP_216436.1 1545608 R 321314 CDS YP_216437.1 62180020 complement(1547101..1547682) 1 NC_006905.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase 1547682 sodB 321314001726 sodB Salmonella enterica subsp. enterica serovar Choleraesuis str. superoxide dismutase YP_216437.1 1547101 R 321314 CDS YP_216438.1 62180021 complement(1547809..1548663) 1 NC_006905.1 IPR000064: NLP/P60; cell wall-associated hydrolase 1548663 ydhO 321314001727 ydhO Salmonella enterica subsp. enterica serovar Choleraesuis str. cell wall-associated hydrolase YP_216438.1 1547809 R 321314 CDS YP_216439.1 62180022 1548966..1549313 1 NC_006905.1 hypothetical protein 1549313 ydhD 321314001728 ydhD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216439.1 1548966 D 321314 CDS YP_216440.1 62180023 complement(1549391..1550038) 1 NC_006905.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1550038 rnt 321314001729 rnt Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease T YP_216440.1 1549391 R 321314 CDS YP_216441.1 62180024 complement(1550139..1550546) 1 NC_006905.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I 1550546 gloA 321314001730 gloA Salmonella enterica subsp. enterica serovar Choleraesuis str. glyoxalase I YP_216441.1 1550139 R 321314 CDS YP_216442.1 62180025 complement(1550615..1551712) 1 NC_006905.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 1551712 nemA 321314001731 nemA Salmonella enterica subsp. enterica serovar Choleraesuis str. N-ethylmaleimide reductase YP_216442.1 1550615 R 321314 CDS YP_216443.1 62180026 complement(1551771..1552307) 1 NC_006905.1 TetR/AcrR family transcriptional regulator 1552307 ydhM 321314001732 ydhM Salmonella enterica subsp. enterica serovar Choleraesuis str. TetR/AcrR family transcriptional regulator YP_216443.1 1551771 R 321314 CDS YP_216444.1 62180027 1552473..1552712 1 NC_006905.1 oxidoreductase 1552712 ydhL 321314001733 ydhL Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_216444.1 1552473 D 321314 CDS YP_216445.1 62180028 1552763..1553659 1 NC_006905.1 IPR001395: Aldo/keto reductase; aldo/keto reductase 1553659 ydhF 321314001734 ydhF Salmonella enterica subsp. enterica serovar Choleraesuis str. aldo/keto reductase YP_216445.1 1552763 D 321314 CDS YP_216446.1 62180029 1553739..1554260 1 NC_006905.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1554260 sodC 321314001735 sodC Salmonella enterica subsp. enterica serovar Choleraesuis str. superoxide dismutase YP_216446.1 1553739 D 321314 CDS YP_216447.1 62180030 complement(1554253..1556274) 1 NC_006905.1 IPR002016: Haem peroxidase; hypothetical protein 1556274 ydhK 321314001736 ydhK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216447.1 1554253 R 321314 CDS YP_216448.1 62180031 complement(1556274..1557176) 1 NC_006905.1 multidrug resistance efflux pump 1557176 ydhJ 321314001737 ydhJ Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug resistance efflux pump YP_216448.1 1556274 R 321314 CDS YP_216449.1 62180032 1557574..1558008 1 NC_006905.1 Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1558008 slyA 321314001738 slyA Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator SlyA YP_216449.1 1557574 D 321314 CDS YP_216450.1 62180033 complement(1558056..1558520) 1 NC_006905.1 outer membrane lipoprotein 1558520 slyB 321314001739 slyB Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_216450.1 1558056 R 321314 CDS YP_216451.1 62180034 1558792..1559913 1 NC_006905.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1559913 anmK 321314001740 anmK Salmonella enterica subsp. enterica serovar Choleraesuis str. anhydro-N-acetylmuramic acid kinase YP_216451.1 1558792 D 321314 CDS YP_216452.1 62180035 1560001..1560330 1 NC_006905.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1560330 ydhA 321314001741 ydhA Salmonella enterica subsp. enterica serovar Choleraesuis str. lysozyme inhibitor YP_216452.1 1560001 D 321314 CDS YP_216453.1 62180036 1560389..1561045 1 NC_006905.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1561045 pdxH 321314001742 pdxH Salmonella enterica subsp. enterica serovar Choleraesuis str. pyridoxamine 5'-phosphate oxidase YP_216453.1 1560389 D 321314 CDS YP_216454.1 62180037 1561172..1562446 1 NC_006905.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1562446 tyrS 321314001743 tyrS Salmonella enterica subsp. enterica serovar Choleraesuis str. tyrosyl-tRNA synthetase YP_216454.1 1561172 D 321314 CDS YP_216455.1 62180038 1562506..1563366 1 NC_006905.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1563366 pdxY 321314001744 pdxY Salmonella enterica subsp. enterica serovar Choleraesuis str. pyridoxamine kinase YP_216455.1 1562506 D 321314 CDS YP_216456.1 62180039 complement(1563425..1564030) 1 NC_006905.1 IPR004045: Glutathione S-transferase, N-terminal; IPR004046: Glutathione S-transferase, C-terminal; glutathionine S-transferase 1564030 gst 321314001745 gst Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathionine S-transferase YP_216456.1 1563425 R 321314 CDS YP_216457.1 62180040 complement(1564135..1565640) 1 NC_006905.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; tripeptide transporter permease 1565640 tppB 321314001746 tppB Salmonella enterica subsp. enterica serovar Choleraesuis str. tripeptide transporter permease YP_216457.1 1564135 R 321314 CDS YP_216458.1 62180041 complement(1566241..1566876) 1 NC_006905.1 DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III 1566876 nth 321314001747 nth Salmonella enterica subsp. enterica serovar Choleraesuis str. endonuclease III YP_216458.1 1566241 R 321314 CDS YP_216459.1 62180042 complement(1566876..1567568) 1 NC_006905.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1567568 ydgQ 321314001748 ydgQ Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transport complex protein RsxE YP_216459.1 1566876 R 321314 CDS YP_216460.1 62180043 complement(1567571..1568191) 1 NC_006905.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 1568191 ydgP 321314001749 ydgP Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transport complex protein RnfG YP_216460.1 1567571 R 321314 CDS YP_216461.1 62180044 complement(1568195..1569253) 1 NC_006905.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 1569253 rnfD 321314001750 rnfD Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transport complex protein RnfD YP_216461.1 1568195 R 321314 CDS YP_216462.1 62180045 complement(1569254..1571368) 1 NC_006905.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 1571368 rnfC 321314001751 rnfC Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transport complex protein RnfC YP_216462.1 1569254 R 321314 CDS YP_216463.1 62180046 complement(1571361..1571939) 1 NC_006905.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1571939 rnfB 321314001752 rnfB Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transport complex protein RnfB YP_216463.1 1571361 R 321314 CDS YP_216464.1 62180047 complement(1571939..1572520) 1 NC_006905.1 Na(+)-translocating NADH-quinone reductase subunit E 1572520 rnfA 321314001753 rnfA Salmonella enterica subsp. enterica serovar Choleraesuis str. Na(+)-translocating NADH-quinone reductase subunit E YP_216464.1 1571939 R 321314 CDS YP_216465.1 62180048 complement(1572597..1573037) 1 NC_006905.1 hypothetical protein 1573037 ydgK 321314001754 ydgK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216465.1 1572597 R 321314 CDS YP_216466.1 62180049 complement(1573126..1573410) 1 NC_006905.1 YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; oriC-binding nucleoid-associated protein 1573410 ydgT 321314001755 ydgT Salmonella enterica subsp. enterica serovar Choleraesuis str. oriC-binding nucleoid-associated protein YP_216466.1 1573126 R 321314 CDS YP_216467.1 62180050 complement(1575087..1576100) 1 NC_006905.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1576100 add 321314001757 add Salmonella enterica subsp. enterica serovar Choleraesuis str. adenosine deaminase YP_216467.1 1575087 R 321314 CDS YP_216468.1 62180051 complement(1576305..1576700) 1 NC_006905.1 MalY protein 1576700 malY 321314001758 malY Salmonella enterica subsp. enterica serovar Choleraesuis str. MalY protein YP_216468.1 1576305 R 321314 CDS YP_216469.1 62180052 1576710..1577300 1 NC_006905.1 maltose regulon regulatory protein malI 1577300 malI 321314001759 malI Salmonella enterica subsp. enterica serovar Choleraesuis str. maltose regulon regulatory protein malI YP_216469.1 1576710 D 321314 CDS YP_216470.1 62180053 complement(1577358..1578866) 1 NC_006905.1 hypothetical protein 1578866 ydgA 321314001760 ydgA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216470.1 1577358 R 321314 CDS YP_216471.1 62180054 complement(1578969..1580048) 1 NC_006905.1 IPR001250: Mannose-6-phosphate isomerase, type I; mannose-6-phosphate isomerase 1580048 manA 321314001761 manA Salmonella enterica subsp. enterica serovar Choleraesuis str. mannose-6-phosphate isomerase YP_216471.1 1578969 R 321314 CDS YP_216472.1 62180055 1580344..1581990 1 NC_006905.1 IPR000362: Fumarate lyase; fumarase A (fumarate hydratase class I), aerobic isozyme 1581990 fumA 321314001762 fumA Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarase A (fumarate hydratase class I), aerobic isozyme YP_216472.1 1580344 D 321314 CDS YP_216473.1 62180056 1582158..1583561 1 NC_006905.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1583561 fumC 321314001763 fumC Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarate hydratase YP_216473.1 1582158 D 321314 CDS YP_216474.1 62180057 complement(1583558..1584487) 1 NC_006905.1 binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 1584487 tus 321314001764 tus Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA replication terminus site-binding protein YP_216474.1 1583558 R 321314 CDS YP_216475.1 62180058 complement(1584563..1585864) 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensor protein RstB 1585864 rstB 321314001765 rstB Salmonella enterica subsp. enterica serovar Choleraesuis str. sensor protein RstB YP_216475.1 1584563 R 321314 CDS YP_216476.1 62180059 complement(1585976..1587676) 1 NC_006905.1 IPR005847: Dihydroorotase region; hypothetical protein 1587676 321314001766 SC1489 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216476.1 1585976 R 321314 CDS YP_216477.1 62180060 complement(1587835..1588968) 1 NC_006905.1 IPR000408: Regulator of chromosome condensation, RCC1; IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; outer membrane protein N, non-specific porin 1588968 ompN 321314001767 ompN Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein N, non-specific porin YP_216477.1 1587835 R 321314 CDS YP_216478.1 62180061 1589025..1589270 1 NC_006905.1 hypothetical protein 1589270 321314001768 SC1491 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216478.1 1589025 D 321314 CDS YP_216479.1 62180062 complement(1589233..1589409) 1 NC_006905.1 hypothetical protein 1589409 321314001769 SC1492 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216479.1 1589233 R 321314 CDS YP_216480.1 62180063 complement(1589448..1590179) 1 NC_006905.1 response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA 1590179 rstA 321314001770 rstA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator RstA YP_216480.1 1589448 R 321314 CDS YP_216481.1 62180064 1590306..1590641 1 NC_006905.1 hypothetical protein 1590641 ydgC 321314001771 ydgC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216481.1 1590306 D 321314 CDS YP_216482.1 62180065 complement(1590703..1592085) 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; amino acid transporter 1592085 ydgI 321314001772 ydgI Salmonella enterica subsp. enterica serovar Choleraesuis str. amino acid transporter YP_216482.1 1590703 R 321314 CDS YP_216483.1 62180066 complement(1592384..1593328) 1 NC_006905.1 hypothetical protein 1593328 ydgH 321314001773 ydgH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216483.1 1592384 R 321314 CDS YP_216484.1 62180067 1593855..1595384 1 NC_006905.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1595384 pntA 321314001774 pntA Salmonella enterica subsp. enterica serovar Choleraesuis str. NAD(P) transhydrogenase subunit alpha YP_216484.1 1593855 D 321314 CDS YP_216485.1 62180068 1595395..1596783 1 NC_006905.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1596783 pntB 321314001775 pntB Salmonella enterica subsp. enterica serovar Choleraesuis str. pyridine nucleotide transhydrogenase YP_216485.1 1595395 D 321314 CDS YP_216486.1 62180069 1598127..1598297 1 NC_006905.1 hypothetical protein 1598297 321314001777 SC1499 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216486.1 1598127 D 321314 CDS YP_216487.1 62180070 1598409..1598771 1 NC_006905.1 with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtJ 1598771 ydgF 321314001778 ydgF Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug efflux system protein MdtJ YP_216487.1 1598409 D 321314 CDS YP_216488.1 62180071 1598758..1599087 1 NC_006905.1 with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtI 1599087 ydgE 321314001779 ydgE Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug efflux system protein MdtI YP_216488.1 1598758 D 321314 CDS YP_216489.1 62180072 complement(1599127..1599948) 1 NC_006905.1 IPR001254: Peptidase S1, chymotrypsin family; IPR008256: Peptidase S1B, serine protease V8; protease 1599948 ydgD 321314001780 ydgD Salmonella enterica subsp. enterica serovar Choleraesuis str. protease YP_216489.1 1599127 R 321314 CDS YP_216490.2 162139590 complement(1600217..1600465) 1 NC_006905.1 required for growth and survival under moderately acid conditions; acid shock protein 1600465 asr 321314001781 asr Salmonella enterica subsp. enterica serovar Choleraesuis str. acid shock protein YP_216490.2 1600217 R 321314 CDS YP_216491.1 62180074 complement(1600860..1602113) 1 NC_006905.1 IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; MFS familty transport protein 1602113 ynfM 321314001782 ynfM Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS familty transport protein YP_216491.1 1600860 R 321314 CDS YP_216492.1 62180075 1602233..1603132 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 1603132 ynfL 321314001783 ynfL Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_216492.1 1602233 D 321314 CDS YP_216493.1 62180076 1603260..1604480 1 NC_006905.1 IPR000600: ROK family; ptsG and ptsHI transcriptional repressor 1604480 mlc 321314001784 mlc Salmonella enterica subsp. enterica serovar Choleraesuis str. ptsG and ptsHI transcriptional repressor YP_216493.1 1603260 D 321314 CDS YP_216494.1 62180077 1604605..1605300 1 NC_006905.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1605300 bioD 321314001785 bioD Salmonella enterica subsp. enterica serovar Choleraesuis str. dithiobiotin synthetase YP_216494.1 1604605 D 321314 CDS YP_216495.1 62180078 complement(1606681..1607829) 1 NC_006905.1 IPR000644: CBS domain; IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC-type proline/glycine betaine transport systems, ATPase 1607829 opbA 321314001787 opbA Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC-type proline/glycine betaine transport systems, ATPase YP_216495.1 1606681 R 321314 CDS YP_216496.1 62180079 complement(1607829..1608476) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system, inner membrane component 1608476 opcB 321314001788 opcB Salmonella enterica subsp. enterica serovar Choleraesuis str. binding-protein-dependent transport system, inner membrane component YP_216496.1 1607829 R 321314 CDS YP_216497.1 62180080 complement(1608486..1609388) 1 NC_006905.1 periplasmic component, ABC transport system 1609388 opcC 321314001789 opcC Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic component, ABC transport system YP_216497.1 1608486 R 321314 CDS YP_216498.1 62180081 complement(1609417..1610127) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC transporter permease 1610127 yehW 321314001790 yehW Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter permease YP_216498.1 1609417 R 321314 CDS YP_216499.1 62180082 complement(1610432..1611046) 1 NC_006905.1 binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; twin-argninine leader-binding protein DmsD 1611046 ynfI 321314001791 ynfI Salmonella enterica subsp. enterica serovar Choleraesuis str. twin-argninine leader-binding protein DmsD YP_216499.1 1610432 R 321314 CDS YP_216500.1 62180083 complement(1611089..1611946) 1 NC_006905.1 dimethylsulfoxide reductase 1611946 ynfH 321314001792 ynfH Salmonella enterica subsp. enterica serovar Choleraesuis str. dimethylsulfoxide reductase YP_216500.1 1611089 R 321314 CDS YP_216501.1 62180084 complement(1611948..1612370) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; anaerobic dimethyl sulfoxide reductase subunit B 1612370 dmsB 321314001793 dmsB Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic dimethyl sulfoxide reductase subunit B YP_216501.1 1611948 R 321314 CDS YP_216502.1 62180085 complement(1612578..1615013) 1 NC_006905.1 IPR006655: Prokaryotic molybdopterin oxidoreductase; dimethyl sulfoxide reductase 1615013 ynfF 321314001794 ynfF Salmonella enterica subsp. enterica serovar Choleraesuis str. dimethyl sulfoxide reductase YP_216502.1 1612578 R 321314 CDS YP_216503.1 62180086 complement(1615112..1617553) 1 NC_006905.1 IPR006311: Twin-arginine translocation pathway signal; IPR006655: Prokaryotic molybdopterin oxidoreductase; IPR006656: Molybdopterin oxidoreductase;IPR006657: Molydopterin dinucleotide binding domain;IPR006963: Molybdopterin oxidoreductase Fe4S4 domain; dimethyl sulfoxide reductase, subunit A1 1617553 ynfE 321314001795 ynfE Salmonella enterica subsp. enterica serovar Choleraesuis str. dimethyl sulfoxide reductase, subunit A1 YP_216503.1 1615112 R 321314 CDS YP_216504.1 62180087 complement(1617707..1618015) 1 NC_006905.1 outer membrane protein 1618015 ynfD 321314001796 ynfD Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_216504.1 1617707 R 321314 CDS YP_216505.2 162139589 1618119..1618829 1 NC_006905.1 hypothetical protein 1618829 ynfC 321314001797 ynfC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216505.2 1618119 D 321314 CDS YP_216506.1 62180089 complement(1618870..1619430) 1 NC_006905.1 spermidine N1-acetyltransferase 1619430 speG 321314001798 speG Salmonella enterica subsp. enterica serovar Choleraesuis str. spermidine N1-acetyltransferase YP_216506.1 1618870 R 321314 CDS YP_216507.1 62180090 complement(1619466..1619807) 1 NC_006905.1 hypothetical protein 1619807 ynfB 321314001799 ynfB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216507.1 1619466 R 321314 CDS YP_216508.2 162139588 1619950..1620285 1 NC_006905.1 IPR003844: Protein of unknown function UPF0060; hypothetical protein 1620285 ynfA 321314001800 ynfA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216508.2 1619950 D 321314 CDS YP_216509.1 62180092 1620407..1621621 1 NC_006905.1 starvation sensing protein; IPR001354: Mandelate racemase/muconate lactonizing enzyme; dehydratase 1621621 rspA 321314001801 rspA Salmonella enterica subsp. enterica serovar Choleraesuis str. dehydratase YP_216509.1 1620407 D 321314 CDS YP_216510.1 62180093 1621632..1622651 1 NC_006905.1 IPR002328: Zinc-containing alcohol dehydrogenase; dehydrogenase 1622651 rspB 321314001802 rspB Salmonella enterica subsp. enterica serovar Choleraesuis str. dehydrogenase YP_216510.1 1621632 D 321314 CDS YP_216511.1 62180094 1622705..1624216 1 NC_006905.1 IPR007114: Major facilitator superfamily; membrane transport protein 1624216 ydfJ 321314001803 ydfJ Salmonella enterica subsp. enterica serovar Choleraesuis str. membrane transport protein YP_216511.1 1622705 D 321314 CDS YP_216512.1 62180095 1624227..1625693 1 NC_006905.1 IPR000669: Mannitol dehydrogenase; mannitol dehydrogenase 1625693 ydfI 321314001804 ydfI Salmonella enterica subsp. enterica serovar Choleraesuis str. mannitol dehydrogenase YP_216512.1 1624227 D 321314 CDS YP_216513.1 62180096 complement(1625760..1626026) 1 NC_006905.1 hypothetical protein 1626026 ydfZ 321314001805 ydfZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216513.1 1625760 R 321314 CDS YP_216514.1 62180097 complement(1626144..1626830) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 1626830 ydfH 321314001806 ydfH Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_216514.1 1626144 R 321314 CDS YP_216515.1 62180098 complement(1626960..1627706) 1 NC_006905.1 NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase 1627706 ydfG 321314001807 ydfG Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-hydroxy acid dehydrogenase YP_216515.1 1626960 R 321314 CDS YP_216516.1 62180099 1627845..1629887 1 NC_006905.1 IPR006025: Neutral zinc metallopeptidases, zinc-binding site; dipeptidyl carboxypeptidase II 1629887 dcp 321314001808 dcp Salmonella enterica subsp. enterica serovar Choleraesuis str. dipeptidyl carboxypeptidase II YP_216516.1 1627845 D 321314 CDS YP_216517.1 62180100 1630180..1630413 1 NC_006905.1 hypothetical protein 1630413 yciG 321314001809 yciG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216517.1 1630180 D 321314 CDS YP_216518.1 62180101 complement(1630285..1630482) 1 NC_006905.1 hypothetical protein 1630482 yciF 321314001810 yciF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216518.1 1630285 R 321314 CDS YP_216519.1 62180102 complement(1630533..1631060) 1 NC_006905.1 competence damage-inducible protein A 1631060 ydeJ 321314001811 ydeJ Salmonella enterica subsp. enterica serovar Choleraesuis str. competence damage-inducible protein A YP_216519.1 1630533 R 321314 CDS YP_216520.1 62180103 1631487..1631879 1 NC_006905.1 hypothetical protein 1631879 ydeI 321314001812 ydeI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216520.1 1631487 D 321314 CDS YP_216521.1 62180104 complement(1632553..1633749) 1 NC_006905.1 YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; MFS-type transporter YdeE 1633749 ydeE 321314001813 ydeE Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS-type transporter YdeE YP_216521.1 1632553 R 321314 CDS YP_216522.1 62180105 1633977..1634879 1 NC_006905.1 IPR000620: Protein of unknown function DUF6; O-acetylserine/cysteine export protein 1634879 ydeD 321314001814 ydeD Salmonella enterica subsp. enterica serovar Choleraesuis str. O-acetylserine/cysteine export protein YP_216522.1 1633977 D 321314 CDS YP_216523.1 62180106 complement(1634998..1635255) 1 NC_006905.1 hypothetical protein 1635255 marB 321314001815 marB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216523.1 1634998 R 321314 CDS YP_216524.1 62180107 complement(1635242..1635625) 1 NC_006905.1 transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA 1635625 marA 321314001816 marA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator MarA YP_216524.1 1635242 R 321314 CDS YP_216525.1 62180108 complement(1635645..1636079) 1 NC_006905.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR 1636079 marR 321314001817 marR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional repressor MarR YP_216525.1 1635645 R 321314 CDS YP_216526.1 62180109 1636338..1637003 1 NC_006905.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 1637003 marC 321314001818 marC Salmonella enterica subsp. enterica serovar Choleraesuis str. multiple drug resistance protein MarC YP_216526.1 1636338 D 321314 CDS YP_216527.1 62180110 complement(1637050..1638240) 1 NC_006905.1 IPR007114: Major facilitator superfamily; sugar efflux transporter 1638240 ydeA 321314001819 ydeA Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar efflux transporter YP_216527.1 1637050 R 321314 CDS YP_216528.1 62180111 1639331..1640719 1 NC_006905.1 in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 1640719 yneI 321314001821 yneI Salmonella enterica subsp. enterica serovar Choleraesuis str. succinate semialdehyde dehydrogenase YP_216528.1 1639331 D 321314 CDS YP_216529.1 62180112 1640792..1641718 1 NC_006905.1 catalyzes the formation of glutamate from glutamine; glutaminase 1641718 yneH 321314001822 yneH Salmonella enterica subsp. enterica serovar Choleraesuis str. glutaminase YP_216529.1 1640792 D 321314 CDS YP_216530.1 62180113 1641718..1642077 1 NC_006905.1 hypothetical protein 1642077 yneG 321314001823 yneG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216530.1 1641718 D 321314 CDS YP_216531.1 62180114 1642301..1643248 1 NC_006905.1 inner membrane protein 1643248 yneE 321314001824 yneE Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216531.1 1642301 D 321314 CDS YP_216532.1 62180115 complement(1643304..1643846) 1 NC_006905.1 outer membrane protein 1643846 321314001825 SC1545 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_216532.1 1643304 R 321314 CDS YP_216533.1 62180116 complement(1643734..1643931) 1 NC_006905.1 hypothetical protein 1643931 321314001826 SC1546 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216533.1 1643734 R 321314 CDS YP_216534.1 62180117 1644563..1645681 1 NC_006905.1 IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; outer membrane protein 1645681 ompC 321314001827 ompC Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_216534.1 1644563 D 321314 CDS YP_216535.1 62180118 complement(1645822..1646163) 1 NC_006905.1 IPR000688: Hydrogenase expression/synthesis, HypA family; hydrogenase 1646163 hybF 321314001828 hybF Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase YP_216535.1 1645822 R 321314 CDS YP_216536.1 62180119 complement(1646176..1646997) 1 NC_006905.1 dehydrogenase 1646997 hupK 321314001829 hupK Salmonella enterica subsp. enterica serovar Choleraesuis str. dehydrogenase YP_216536.1 1646176 R 321314 CDS YP_216537.1 62180120 complement(1647051..1648112) 1 NC_006905.1 IPR001052: Rubredoxin; IPR004039: Rubredoxin-type Fe(Cys)4 protein; hydrogenase 1648112 hoxQ 321314001830 hoxQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase YP_216537.1 1647051 R 321314 CDS YP_216538.1 62180121 complement(1648130..1648540) 1 NC_006905.1 hydrogenase 1648540 hyaE 321314001831 hyaE Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase YP_216538.1 1648130 R 321314 CDS YP_216539.1 62180122 complement(1648537..1648836) 1 NC_006905.1 IPR001109: Hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase 1648836 hupF 321314001832 hupF Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase YP_216539.1 1648537 R 321314 CDS YP_216540.1 62180123 complement(1648836..1649444) 1 NC_006905.1 IPR000671: Hydrogen uptake protein; hydrogenase maturation protease 1649444 hupD 321314001833 hupD Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase maturation protease YP_216540.1 1648836 R 321314 CDS YP_216541.1 62180124 complement(1649450..1650124) 1 NC_006905.1 IPR000516: Nickel-dependent hydrogenase b-type cytochrome subunit; Ni/Fe-hydrogenase 1 b-type cytochrome subunit 1650124 cybH 321314001834 cybH Salmonella enterica subsp. enterica serovar Choleraesuis str. Ni/Fe-hydrogenase 1 b-type cytochrome subunit YP_216541.1 1649450 R 321314 CDS YP_216542.1 62180125 complement(1650144..1650947) 1 NC_006905.1 IPR001501: Nickel-dependent hydrogenase, large subunit; hydrogenase-1 large subunit 1650947 mbhL 321314001835 mbhL Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase-1 large subunit YP_216542.1 1650144 R 321314 CDS YP_216543.1 62180126 complement(1650950..1651279) 1 NC_006905.1 hydrogenase-1 small subunit 1651279 mbhS 321314001836 mbhS Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase-1 small subunit YP_216543.1 1650950 R 321314 CDS YP_216544.1 62180127 complement(1651177..1651686) 1 NC_006905.1 PhoPQ-regulated protein 1651686 pqaA 321314001837 pqaA Salmonella enterica subsp. enterica serovar Choleraesuis str. PhoPQ-regulated protein YP_216544.1 1651177 R 321314 CDS YP_216545.1 62180128 complement(1652035..1652172) 1 NC_006905.1 IPR007114: Major facilitator superfamily; multidrug efflux protein 1652172 321314001838 SC1558 Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug efflux protein YP_216545.1 1652035 R 321314 CDS YP_216546.1 62180129 complement(1652136..1652603) 1 NC_006905.1 monooxygenase 1652603 321314001839 SC1559 Salmonella enterica subsp. enterica serovar Choleraesuis str. monooxygenase YP_216546.1 1652136 R 321314 CDS YP_216547.1 62180130 complement(1653209..1654543) 1 NC_006905.1 glycosyl hydrolase 1654543 treY 321314001840 treY Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl hydrolase YP_216547.1 1653209 R 321314 CDS YP_216548.1 62180131 complement(1654540..1656324) 1 NC_006905.1 alpha amylase 1656324 treZ 321314001841 treZ Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha amylase YP_216548.1 1654540 R 321314 CDS YP_216549.1 62180132 complement(1656453..1657238) 1 NC_006905.1 outer membrane or secreted lipoprotein 1657238 321314001842 SC1562 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane or secreted lipoprotein YP_216549.1 1656453 R 321314 CDS YP_216550.1 62180133 complement(1657381..1657710) 1 NC_006905.1 acid-resistance protein 1657710 hdeB 321314001843 hdeB Salmonella enterica subsp. enterica serovar Choleraesuis str. acid-resistance protein YP_216550.1 1657381 R 321314 CDS YP_216551.1 62180134 complement(1658060..1658491) 1 NC_006905.1 resistance protein, osmotically inducible 1658491 osmC 321314001844 osmC Salmonella enterica subsp. enterica serovar Choleraesuis str. resistance protein, osmotically inducible YP_216551.1 1658060 R 321314 CDS YP_216552.1 62180135 1659003..1659218 1 NC_006905.1 biofilm-dependent modulation protein 1659218 yddX 321314001845 yddX Salmonella enterica subsp. enterica serovar Choleraesuis str. biofilm-dependent modulation protein YP_216552.1 1659003 D 321314 CDS YP_216553.1 62180136 1659313..1659456 1 NC_006905.1 protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1659456 rpsV 321314001846 rpsV Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal subunit S22 YP_216553.1 1659313 D 321314 CDS YP_216554.2 229037910 1659633..1661330 1 NC_006905.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1661330 sfcA 321314001847 sfcA Salmonella enterica subsp. enterica serovar Choleraesuis str. malate dehydrogenase YP_216554.2 1659633 D 321314 CDS YP_216555.1 62180138 1661616..1662626 1 NC_006905.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1662626 adhP 321314001848 adhP Salmonella enterica subsp. enterica serovar Choleraesuis str. alcohol dehydrogenase YP_216555.1 1661616 D 321314 CDS YP_216556.1 62180139 complement(1662717..1663373) 1 NC_006905.1 nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma 1663373 fdnI 321314001849 fdnI Salmonella enterica subsp. enterica serovar Choleraesuis str. formate dehydrogenase-N subunit gamma YP_216556.1 1662717 R 321314 CDS YP_216557.1 62180140 complement(1663366..1664250) 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; formate dehydrogenase-N, Fe-S beta subunit, nitrate-inducible 1664250 fdnH 321314001850 fdnH Salmonella enterica subsp. enterica serovar Choleraesuis str. formate dehydrogenase-N, Fe-S beta subunit, nitrate-inducible YP_216557.1 1663366 R 321314 CDS YP_216558.2 162139587 1667589..1668470 1 NC_006905.1 hypothetical protein 1668470 yddG 321314001852 yddG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216558.2 1667589 D 321314 CDS YP_216559.1 62180142 1668993..1670081 1 NC_006905.1 IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; new outer membrane protein; porin 1670081 nmpC 321314001853 nmpC Salmonella enterica subsp. enterica serovar Choleraesuis str. new outer membrane protein; porin YP_216559.1 1668993 D 321314 CDS YP_216560.1 62180143 1670165..1670605 1 NC_006905.1 hypothetical protein 1670605 321314001854 SC1573 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216560.1 1670165 D 321314 CDS YP_216561.1 62180144 complement(1670630..1672117) 1 NC_006905.1 IPR001411: Tetracycline resistance protein TetB; IPR007114: Major facilitator superfamily; methyl viologen resistance 1672117 smvA 321314001855 smvA Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl viologen resistance YP_216561.1 1670630 R 321314 CDS YP_216562.1 62180145 1672235..1672813 1 NC_006905.1 IPR001647: Bacterial regulatory protein TetR, HTH motif; TetR family transcriptional regulator 1672813 321314001856 SC1575 Salmonella enterica subsp. enterica serovar Choleraesuis str. TetR family transcriptional regulator YP_216562.1 1672235 D 321314 CDS YP_216563.1 62180146 1673027..1674415 1 NC_006905.1 major facilitator superfamily nitrate extrusion protein 1674415 narU 321314001857 narU Salmonella enterica subsp. enterica serovar Choleraesuis str. major facilitator superfamily nitrate extrusion protein YP_216563.1 1673027 D 321314 CDS YP_216564.1 62180147 1678244..1679788 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; nitrate reductase 2 subunit beta 1679788 narY 321314001859 narY Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrate reductase 2 subunit beta YP_216564.1 1678244 D 321314 CDS YP_216565.1 62180148 1679788..1681155 1 NC_006905.1 nitrate reductase 2 subunit gamma 1681155 narV 321314001860 narV Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrate reductase 2 subunit gamma YP_216565.1 1679788 D 321314 CDS YP_216566.1 62180149 1681260..1682153 1 NC_006905.1 hypothetical protein 1682153 yddE 321314001861 yddE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216566.1 1681260 D 321314 CDS YP_216567.1 62180150 complement(1682189..1682356) 1 NC_006905.1 IPR001447: N-acetyltransferase; arylamine N-acetyltransferase 1682356 nhoA 321314001862 nhoA Salmonella enterica subsp. enterica serovar Choleraesuis str. arylamine N-acetyltransferase YP_216567.1 1682189 R 321314 CDS YP_216568.1 62180151 complement(1682657..1683289) 1 NC_006905.1 hypothetical protein 1683289 321314001863 SC1581 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216568.1 1682657 R 321314 CDS YP_216569.1 62180152 1683802..1685295 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; IPR004840: Amino acid permease; IPR004841: Amino acid permease-associated region; L-asparagine APC transporter 1685295 ansP 321314001864 ansP Salmonella enterica subsp. enterica serovar Choleraesuis str. L-asparagine APC transporter YP_216569.1 1683802 D 321314 CDS YP_216570.1 62180153 complement(1685372..1685593) 1 NC_006905.1 outer membrane lipoprotein 1685593 ygdR 321314001865 ygdR Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_216570.1 1685372 R 321314 CDS YP_216571.1 62180154 complement(1685738..1686799) 1 NC_006905.1 hypothetical protein 1686799 yncE 321314001866 yncE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216571.1 1685738 R 321314 CDS YP_216572.2 162139586 1687063..1689183 1 NC_006905.1 outer membrane receptor 1689183 yncD 321314001867 yncD Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane receptor YP_216572.2 1687063 D 321314 CDS YP_216573.1 62180156 complement(1690238..1691308) 1 NC_006905.1 IPR002085: Zinc-containing alcohol dehydrogenase superfamily; NADP-dependent oxidoreductase 1691308 yncB 321314001869 yncB Salmonella enterica subsp. enterica serovar Choleraesuis str. NADP-dependent oxidoreductase YP_216573.1 1690238 R 321314 CDS YP_216574.1 62180157 1691487..1692002 1 NC_006905.1 acyltransferase 1692002 yncA 321314001870 yncA Salmonella enterica subsp. enterica serovar Choleraesuis str. acyltransferase YP_216574.1 1691487 D 321314 CDS YP_216575.1 62180158 1692002..1692451 1 NC_006905.1 hypothetical protein 1692451 ydcZ 321314001871 ydcZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216575.1 1692002 D 321314 CDS YP_216576.1 62180159 complement(1692456..1692689) 1 NC_006905.1 hypothetical protein 1692689 ydcY 321314001872 ydcY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216576.1 1692456 R 321314 CDS YP_216577.1 62180160 1692913..1694238 1 NC_006905.1 ssrAB activated gene 1694238 srfA 321314001873 srfA Salmonella enterica subsp. enterica serovar Choleraesuis str. ssrAB activated gene YP_216577.1 1692913 D 321314 CDS YP_216578.1 62180161 1694243..1697224 1 NC_006905.1 ssrAB activated gene 1697224 srfB 321314001874 srfB Salmonella enterica subsp. enterica serovar Choleraesuis str. ssrAB activated gene YP_216578.1 1694243 D 321314 CDS YP_216579.1 62180162 1697221..1699365 1 NC_006905.1 ssrAB activated gene: coiled-coil structure 1699365 srfC 321314001875 srfC Salmonella enterica subsp. enterica serovar Choleraesuis str. ssrAB activated gene: coiled-coil structure YP_216579.1 1697221 D 321314 CDS YP_216580.1 62180163 complement(1699410..1699673) 1 NC_006905.1 inner membrane protein 1699673 ydcX 321314001876 ydcX Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216580.1 1699410 R 321314 CDS YP_216581.2 162139585 complement(1699982..1701406) 1 NC_006905.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1701406 ydcW 321314001877 ydcW Salmonella enterica subsp. enterica serovar Choleraesuis str. gamma-aminobutyraldehyde dehydrogenase YP_216581.2 1699982 R 321314 CDS YP_216582.1 62180165 complement(1701542..1702966) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; IPR004839: Aminotransferase, class I and II; GntR family transcriptional regulator 1702966 ydcR 321314001878 ydcR Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_216582.1 1701542 R 321314 CDS YP_216583.1 62180166 complement(1703102..1703872) 1 NC_006905.1 IPR000755: D-ala-D-ala dipeptidase; periplasmic dipeptidase for D-ala-D-ala digestion in peptidoglycan 1703872 pdgL 321314001879 pdgL Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic dipeptidase for D-ala-D-ala digestion in peptidoglycan YP_216583.1 1703102 R 321314 CDS YP_216584.1 62180167 complement(1704131..1704361) 1 NC_006905.1 inner membrane protein 1704361 321314001880 SC1597 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216584.1 1704131 R 321314 CDS YP_216585.1 62180168 complement(1704394..1704792) 1 NC_006905.1 similar to chitinase from Schizosaccharomyces; hypothetical protein 1704792 ugtL 321314001881 ugtL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216585.1 1704394 R 321314 CDS YP_216586.2 162139584 1705329..1706279 1 NC_006905.1 translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1706279 sifB 321314001882 sifB Salmonella enterica subsp. enterica serovar Choleraesuis str. secreted effector protein YP_216586.2 1705329 D 321314 CDS YP_216587.1 62180170 1706553..1706783 1 NC_006905.1 hypothetical protein 1706783 yncJ 321314001883 yncJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216587.1 1706553 D 321314 CDS YP_216588.1 62180171 complement(1706784..1708748) 1 NC_006905.1 IPR001539: Peptidase U32; collagenase 1708748 ydcP 321314001884 ydcP Salmonella enterica subsp. enterica serovar Choleraesuis str. collagenase YP_216588.1 1706784 R 321314 CDS YP_216589.1 62180172 complement(1708827..1709363) 1 NC_006905.1 oxidoreductase 1709363 ydcN 321314001885 ydcN Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_216589.1 1708827 R 321314 CDS YP_216590.1 62180173 1709394..1710632 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; IPR004711: Benzoate membrane transport protein; benzoate membrane transport protein 1710632 ydcO 321314001886 ydcO Salmonella enterica subsp. enterica serovar Choleraesuis str. benzoate membrane transport protein YP_216590.1 1709394 D 321314 CDS YP_216591.1 62180174 complement(1710686..1711312) 1 NC_006905.1 outer membrane lipoprotein 1711312 ydcL 321314001887 ydcL Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_216591.1 1710686 R 321314 CDS YP_216592.1 62180175 complement(1711518..1712114) 1 NC_006905.1 with TehA confers resistance to tellurite; tellurite resistance protein TehB 1712114 tehB 321314001888 tehB Salmonella enterica subsp. enterica serovar Choleraesuis str. tellurite resistance protein TehB YP_216592.1 1711518 R 321314 CDS YP_216593.1 62180176 complement(1712101..1713114) 1 NC_006905.1 IPR004695: C4-dicarboxylate transporter/malic acid transport protein; potassium-tellurite ethidium and proflavin transporter 1713114 tehA 321314001889 tehA Salmonella enterica subsp. enterica serovar Choleraesuis str. potassium-tellurite ethidium and proflavin transporter YP_216593.1 1712101 R 321314 CDS YP_216594.1 62180177 complement(1714199..1714738) 1 NC_006905.1 ribosomal-protein-L7/L12-serine acetyltransferase 1714738 rimL 321314001891 rimL Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosomal-protein-L7/L12-serine acetyltransferase YP_216594.1 1714199 R 321314 CDS YP_216595.1 62180178 1714955..1716073 1 NC_006905.1 cellulase 1716073 sgcX 321314001892 sgcX Salmonella enterica subsp. enterica serovar Choleraesuis str. cellulase YP_216595.1 1714955 D 321314 CDS YP_216596.1 62180179 1716070..1716351 1 NC_006905.1 PTS system, enzymeIIB component 1716351 sgcB 321314001893 sgcB Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system, enzymeIIB component YP_216596.1 1716070 D 321314 CDS YP_216597.1 62180180 1716362..1717675 1 NC_006905.1 PTS system enzyme IIC component 1717675 sgcC 321314001894 sgcC Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system enzyme IIC component YP_216597.1 1716362 D 321314 CDS YP_216598.1 62180181 1717689..1718495 1 NC_006905.1 IPR005137: BtpA family; nucleoside triphosphatase 1718495 sgcQ 321314001895 sgcQ Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleoside triphosphatase YP_216598.1 1717689 D 321314 CDS YP_216599.1 62180182 1718627..1719064 1 NC_006905.1 IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; sugar specific PTS enzyme II 1719064 sgcA 321314001896 sgcA Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar specific PTS enzyme II YP_216599.1 1718627 D 321314 CDS YP_216600.1 62180183 1719076..1719708 1 NC_006905.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; epimerase 1719708 sgcE 321314001897 sgcE Salmonella enterica subsp. enterica serovar Choleraesuis str. epimerase YP_216600.1 1719076 D 321314 CDS YP_216601.1 62180184 1719724..1720515 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; DeoR family transcriptional regulator 1720515 sgcR 321314001898 sgcR Salmonella enterica subsp. enterica serovar Choleraesuis str. DeoR family transcriptional regulator YP_216601.1 1719724 D 321314 CDS YP_216602.1 62180185 1720515..1720952 1 NC_006905.1 cryptic aminoglycoside resistance gene 1720952 aac6 321314001899 aac6 Salmonella enterica subsp. enterica serovar Choleraesuis str. cryptic aminoglycoside resistance gene YP_216602.1 1720515 D 321314 CDS YP_216603.1 62180186 complement(1720999..1722201) 1 NC_006905.1 IPR003009: FMN/related compound-binding core; IPR008259: FMN-dependent alpha-hydroxy acid dehydrogenase, active site; oxidase 1722201 gox 321314001900 gox Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidase YP_216603.1 1720999 R 321314 CDS YP_216604.1 62180187 complement(1722213..1722788) 1 NC_006905.1 IPR007372: YceI; hypothetical protein 1722788 yceI 321314001901 yceI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216604.1 1722213 R 321314 CDS YP_216605.1 62180188 complement(1722984..1724699) 1 NC_006905.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1724699 mdoD 321314001902 mdoD Salmonella enterica subsp. enterica serovar Choleraesuis str. glucan biosynthesis protein D YP_216605.1 1722984 R 321314 CDS YP_216606.1 62180189 complement(1726416..1727759) 1 NC_006905.1 IPR000276: Rhodopsin-like GPCR superfamily; hypothetical protein 1727759 ydcj 321314001904 ydcj Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216606.1 1726416 R 321314 CDS YP_216607.1 62180190 1727983..1728975 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 1728975 ydcI 321314001905 ydcI Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_216607.1 1727983 D 321314 CDS YP_216608.1 62180191 complement(1729036..1730661) 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein;IPR004091: Aspartate chemoreceptor protein; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor 1730661 trg 321314001906 trg Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor YP_216608.1 1729036 R 321314 CDS YP_216609.1 62180192 complement(1730830..1731948) 1 NC_006905.1 IPR002328: Zinc-containing alcohol dehydrogenase; alcohol dehydrogenase 1731948 adh3 321314001907 adh3 Salmonella enterica subsp. enterica serovar Choleraesuis str. alcohol dehydrogenase YP_216609.1 1730830 R 321314 CDS YP_216610.1 62180193 complement(1731980..1732360) 1 NC_006905.1 hypothetical protein 1732360 yohL 321314001908 yohL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216610.1 1731980 R 321314 CDS YP_216611.1 62180194 1732778..1733179 1 NC_006905.1 dipicolinate reductase 1733179 dpr 321314001909 dpr Salmonella enterica subsp. enterica serovar Choleraesuis str. dipicolinate reductase YP_216611.1 1732778 D 321314 CDS YP_216613.1 62180196 1734452..1735678 1 NC_006905.1 IPR001087: Lipolytic enzyme, G-D-S-L family; translocated effector: regulated by SPI-2 1735678 sseJ 321314001911 sseJ Salmonella enterica subsp. enterica serovar Choleraesuis str. translocated effector: regulated by SPI-2 YP_216613.1 1734452 D 321314 CDS YP_216614.1 62180197 complement(1735799..1736143) 1 NC_006905.1 inner membrane protein 1736143 321314001912 SC1627 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216614.1 1735799 R 321314 CDS YP_216615.1 62180198 1737050..1737280 1 NC_006905.1 periplasmic binding protein 1737280 321314001913 SC1628 Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic binding protein YP_216615.1 1737050 D 321314 CDS YP_216616.1 62180199 1737817..1738464 1 NC_006905.1 amino acid ABC transporter permease component 1738464 yckA 321314001915 yckA Salmonella enterica subsp. enterica serovar Choleraesuis str. amino acid ABC transporter permease component YP_216616.1 1737817 D 321314 CDS YP_216617.1 62180200 1738489..1739220 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; polar amino acid ABC transporter ATPase 1739220 gltL 321314001916 gltL Salmonella enterica subsp. enterica serovar Choleraesuis str. polar amino acid ABC transporter ATPase YP_216617.1 1738489 D 321314 CDS YP_216618.1 62180201 1739217..1739897 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC-type transport system membrane spanning protein 1739897 321314001917 SC1631 Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC-type transport system membrane spanning protein YP_216618.1 1739217 D 321314 CDS YP_216619.1 62180202 1740034..1740534 1 NC_006905.1 inner membrane protein 1740534 321314001918 SC1632 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216619.1 1740034 D 321314 CDS YP_216620.1 62180203 1740813..1740962 1 NC_006905.1 hypothetical protein 1740962 321314001919 SC1633 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216620.1 1740813 D 321314 CDS YP_216621.1 62180204 1742046..1742708 1 NC_006905.1 IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase; SAM-dependent methyltransferase 1742708 ybcY 321314001920 ybcY Salmonella enterica subsp. enterica serovar Choleraesuis str. SAM-dependent methyltransferase YP_216621.1 1742046 D 321314 CDS YP_216622.1 62180205 complement(1743626..1744426) 1 NC_006905.1 hypothetical protein 1744426 ydcF 321314001922 ydcF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216622.1 1743626 R 321314 CDS YP_216623.2 162139583 complement(1744490..1748335) 1 NC_006905.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 1748335 hrpA 321314001923 hrpA Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent RNA helicase HrpA YP_216623.2 1744490 R 321314 CDS YP_216624.1 62180207 1748593..1749198 1 NC_006905.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1749198 acpD 321314001924 acpD Salmonella enterica subsp. enterica serovar Choleraesuis str. azoreductase YP_216624.1 1748593 D 321314 CDS YP_216625.1 62180208 complement(1749195..1749644) 1 NC_006905.1 inner membrane protein 1749644 321314001925 SC1638 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216625.1 1749195 R 321314 CDS YP_216626.1 62180209 complement(1749787..1750110) 1 NC_006905.1 hypothetical protein 1750110 ydbL 321314001926 ydbL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216626.1 1749787 R 321314 CDS YP_216627.1 62180210 complement(1750118..1750309) 1 NC_006905.1 outer membrane lipoprotein 1750309 ynbE 321314001927 ynbE Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_216627.1 1750118 R 321314 CDS YP_216628.1 62180211 complement(1750309..1752945) 1 NC_006905.1 hypothetical protein 1752945 ydbH 321314001928 ydbH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216628.1 1750309 R 321314 CDS YP_216629.1 62180212 1753212..1754201 1 NC_006905.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 1754201 ldhA 321314001929 ldhA Salmonella enterica subsp. enterica serovar Choleraesuis str. D-lactate dehydrogenase YP_216629.1 1753212 D 321314 CDS YP_216630.1 62180213 1754312..1754722 1 NC_006905.1 IPR005184: Protein of unknown function DUF306; heat-inducible protein 1754722 hslJ 321314001930 hslJ Salmonella enterica subsp. enterica serovar Choleraesuis str. heat-inducible protein YP_216630.1 1754312 D 321314 CDS YP_216631.1 62180214 complement(1754766..1755032) 1 NC_006905.1 hypothetical protein 1755032 ydbJ 321314001931 ydbJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216631.1 1754766 R 321314 CDS YP_216632.1 62180215 1755308..1758832 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; pyruvate-flavodoxin oxidoreductase 1758832 nifJ 321314001932 nifJ Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate-flavodoxin oxidoreductase YP_216632.1 1755308 D 321314 CDS YP_216633.1 62180216 1759314..1759748 1 NC_006905.1 IPR006015: Universal stress protein (Usp); hypothetical protein 1759748 ynaF 321314001933 ynaF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216633.1 1759314 D 321314 CDS YP_216634.1 62180217 complement(1759798..1760136) 1 NC_006905.1 IPR000390: Small multidrug resistance protein; membrane transporter of cations 1760136 emrE 321314001934 emrE Salmonella enterica subsp. enterica serovar Choleraesuis str. membrane transporter of cations YP_216634.1 1759798 R 321314 CDS YP_216635.1 62180218 1760300..1760440 1 NC_006905.1 lambdoid prophage Rac integrase 1760440 intR 321314001935 intR Salmonella enterica subsp. enterica serovar Choleraesuis str. lambdoid prophage Rac integrase YP_216635.1 1760300 D 321314 CDS YP_216636.1 62180219 1760492..1761427 1 NC_006905.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1761427 ydaO 321314001936 ydaO Salmonella enterica subsp. enterica serovar Choleraesuis str. C32 tRNA thiolase YP_216636.1 1760492 D 321314 CDS YP_216637.1 62180220 complement(1761471..1762844) 1 NC_006905.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 1762844 dbpA 321314001937 dbpA Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent RNA helicase DbpA YP_216637.1 1761471 R 321314 CDS YP_216638.1 62180221 complement(1763332..1764315) 1 NC_006905.1 zinc transporter 1764315 zntB 321314001938 zntB Salmonella enterica subsp. enterica serovar Choleraesuis str. zinc transporter YP_216638.1 1763332 R 321314 CDS YP_216639.1 62180222 complement(1764539..1765615) 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 1765615 mcp 321314001939 mcp Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting chemotaxis protein YP_216639.1 1764539 R 321314 CDS YP_216640.1 62180223 complement(1765626..1765799) 1 NC_006905.1 hypothetical protein 1765799 321314001940 SC1653 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216640.1 1765626 R 321314 CDS YP_216641.1 62180224 complement(1766008..1766571) 1 NC_006905.1 IPR002625: Smr protein/MutS2 C-terminal; Smr domain-containing protein 1766571 ydaL 321314001941 ydaL Salmonella enterica subsp. enterica serovar Choleraesuis str. Smr domain-containing protein YP_216641.1 1766008 R 321314 CDS YP_216642.1 62180225 1766829..1767344 1 NC_006905.1 IPR001497: Methylated-DNA-[protein]-cysteine S-methyltransferase;protein; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1767344 ogt 321314001942 ogt Salmonella enterica subsp. enterica serovar Choleraesuis str. O-6-alkylguanine-DNA:cysteine-protein methyltransferase YP_216642.1 1766829 D 321314 CDS YP_216643.2 162139582 1767540..1768292 1 NC_006905.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1768292 fnr 321314001943 fnr Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarate/nitrate reduction transcriptional regulator YP_216643.2 1767540 D 321314 CDS YP_216644.1 62180227 1768443..1769390 1 NC_006905.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1769390 ydaA 321314001944 ydaA Salmonella enterica subsp. enterica serovar Choleraesuis str. universal stress protein UspE YP_216644.1 1768443 D 321314 CDS YP_216645.1 62180228 complement(1769445..1769831) 1 NC_006905.1 hypothetical protein 1769831 ynaJ 321314001945 ynaJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216645.1 1769445 R 321314 CDS YP_216646.1 62180229 1769938..1770969 1 NC_006905.1 IPR006686: Mechanosensitive (MS) ion channel subdomain; hypothetical protein 1770969 ynaI 321314001946 ynaI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216646.1 1769938 D 321314 CDS YP_216647.1 62180230 complement(1771052..1771654) 1 NC_006905.1 transcriptional regulator 1771654 ydcN 321314001947 ydcN Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_216647.1 1771052 R 321314 CDS YP_216648.1 62180231 1771698..1772384 1 NC_006905.1 hypothetical protein 1772384 321314001948 SC1661 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216648.1 1771698 D 321314 CDS YP_216649.1 62180232 1772412..1772750 1 NC_006905.1 hypothetical protein 1772750 321314001949 SC1662 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216649.1 1772412 D 321314 CDS YP_216650.1 62180233 complement(1773513..1774343) 1 NC_006905.1 hypothetical protein 1774343 321314001951 SC1663 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216650.1 1773513 R 321314 CDS YP_216651.1 62180234 complement(1776384..1777229) 1 NC_006905.1 serine/threonine protein kinase 1777229 321314001953 SC1664 Salmonella enterica subsp. enterica serovar Choleraesuis str. serine/threonine protein kinase YP_216651.1 1776384 R 321314 CDS YP_216652.1 62180235 1777523..1778380 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 1778380 cafR 321314001954 cafR Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_216652.1 1777523 D 321314 CDS YP_216653.1 62180236 1778827..1779882 1 NC_006905.1 hypothetical protein 1779882 321314001955 SC1666 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216653.1 1778827 D 321314 CDS YP_216654.1 62180237 complement(1780096..1780350) 1 NC_006905.1 outer membrane lipoprotein 1780350 321314001956 SC1667 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_216654.1 1780096 R 321314 CDS YP_216655.1 62180238 complement(1780461..1781051) 1 NC_006905.1 AraC family transcriptional regulator 1781051 yjgJ 321314001957 yjgJ Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_216655.1 1780461 R 321314 CDS YP_216656.1 62180239 1781129..1781842 1 NC_006905.1 IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; oxidoreductase 1781842 yjgI 321314001958 yjgI Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_216656.1 1781129 D 321314 CDS YP_216657.1 62180240 complement(1781933..1782802) 1 NC_006905.1 IPR001395: Aldo/keto reductase; aldo/keto reductase 1782802 321314001959 SC1670 Salmonella enterica subsp. enterica serovar Choleraesuis str. aldo/keto reductase YP_216657.1 1781933 R 321314 CDS YP_216658.1 62180241 complement(1783079..1783984) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 1783984 yjgC 321314001960 yjgC Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_216658.1 1783079 R 321314 CDS YP_216659.1 62180242 complement(1784843..1786744) 1 NC_006905.1 periplasmic murein tripeptide transport protein, also negative regulator of mulitple antibiotic resistance 1786744 mppA 321314001962 mppA Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic murein tripeptide transport protein, also negative regulator of mulitple antibiotic resistance YP_216659.1 1784843 R 321314 CDS YP_216660.1 62180243 1786934..1787662 1 NC_006905.1 murein peptide amidase A 1787662 ycjI 321314001963 ycjI Salmonella enterica subsp. enterica serovar Choleraesuis str. murein peptide amidase A YP_216660.1 1786934 D 321314 CDS YP_216661.1 62180244 complement(1787637..1788602) 1 NC_006905.1 IPR001354: Mandelate racemase/muconate lactonizing enzyme; chloromuconate cycloisomerase (muconate cycloisomerase) 1788602 ycjG 321314001964 ycjG Salmonella enterica subsp. enterica serovar Choleraesuis str. chloromuconate cycloisomerase (muconate cycloisomerase) YP_216661.1 1787637 R 321314 CDS YP_216662.1 62180245 1788718..1789224 1 NC_006905.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1789224 tpx 321314001965 tpx Salmonella enterica subsp. enterica serovar Choleraesuis str. thiol peroxidase YP_216662.1 1788718 D 321314 CDS YP_216663.1 62180246 complement(1789313..1790854) 1 NC_006905.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 1790854 tyrR 321314001966 tyrR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator TyrR YP_216663.1 1789313 R 321314 CDS YP_216664.1 62180247 complement(1791002..1792063) 1 NC_006905.1 hypothetical protein 1792063 ycjF 321314001967 ycjF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216664.1 1791002 R 321314 CDS YP_216665.1 62180248 complement(1792060..1793463) 1 NC_006905.1 IPR007413: YcjX-like protein; ATPase 1793463 ycjX 321314001968 ycjX Salmonella enterica subsp. enterica serovar Choleraesuis str. ATPase YP_216665.1 1792060 R 321314 CDS YP_216666.1 62180249 complement(1793606..1793920) 1 NC_006905.1 rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase 1793920 pspE 321314001969 pspE Salmonella enterica subsp. enterica serovar Choleraesuis str. thiosulfate:cyanide sulfurtransferase YP_216666.1 1793606 R 321314 CDS YP_216667.1 62180250 complement(1793996..1794181) 1 NC_006905.1 peripheral inner membrane phage-shock protein 1794181 pspD 321314001970 pspD Salmonella enterica subsp. enterica serovar Choleraesuis str. peripheral inner membrane phage-shock protein YP_216667.1 1793996 R 321314 CDS YP_216668.1 62180251 complement(1794237..1794596) 1 NC_006905.1 with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC 1794596 pspC 321314001971 pspC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator PspC YP_216668.1 1794237 R 321314 CDS YP_216669.1 62180252 complement(1794596..1794820) 1 NC_006905.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 1794820 pspB 321314001972 pspB Salmonella enterica subsp. enterica serovar Choleraesuis str. phage shock protein B YP_216669.1 1794596 R 321314 CDS YP_216670.1 62180253 complement(1794880..1795548) 1 NC_006905.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 1795548 pspA 321314001973 pspA Salmonella enterica subsp. enterica serovar Choleraesuis str. phage shock protein PspA YP_216670.1 1794880 R 321314 CDS YP_216671.2 162139581 1795719..1796699 1 NC_006905.1 transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator 1796699 pspF 321314001974 pspF Salmonella enterica subsp. enterica serovar Choleraesuis str. phage shock protein operon transcriptional activator YP_216671.2 1795719 D 321314 CDS YP_216672.1 62180255 1796787..1798460 1 NC_006905.1 IPR000914: Bacterial extracellular solute-binding protein, family 5; peptide ABC transporter substrate-binding protein 1798460 sapA 321314001975 sapA Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide ABC transporter substrate-binding protein YP_216672.1 1796787 D 321314 CDS YP_216673.1 62180256 1798457..1799422 1 NC_006905.1 peptide ABC transporter 1799422 sapB 321314001976 sapB Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide ABC transporter YP_216673.1 1798457 D 321314 CDS YP_216674.1 62180257 1799409..1800299 1 NC_006905.1 peptide ABC transporter 1800299 sapC 321314001977 sapC Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide ABC transporter YP_216674.1 1799409 D 321314 CDS YP_216675.1 62180258 1800299..1801291 1 NC_006905.1 IPR003439: ABC transporter; peptide ABC transporter ATP-binding protein 1801291 sapD 321314001978 sapD Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide ABC transporter ATP-binding protein YP_216675.1 1800299 D 321314 CDS YP_216676.1 62180259 1801293..1802099 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; peptide ABC transporter ATP-binding protein 1802099 sapF 321314001979 sapF Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide ABC transporter ATP-binding protein YP_216676.1 1801293 D 321314 CDS YP_216677.1 62180260 complement(1802115..1802822) 1 NC_006905.1 IPR001633: EAL domain; hypothetical protein 1802822 ydiV 321314001980 ydiV Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216677.1 1802115 R 321314 CDS YP_216678.1 62180261 complement(1803288..1804661) 1 NC_006905.1 hypothetical protein 1804661 321314001981 SC1691 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216678.1 1803288 R 321314 CDS YP_216679.1 62180262 1804696..1804875 1 NC_006905.1 e6 protein 1804875 321314001982 SC1692 Salmonella enterica subsp. enterica serovar Choleraesuis str. e6 protein YP_216679.1 1804696 D 321314 CDS YP_216680.1 62180263 1804850..1805149 1 NC_006905.1 hypothetical protein 1805149 ycjE 321314001983 ycjE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216680.1 1804850 D 321314 CDS YP_216681.1 62180264 1805267..1806055 1 NC_006905.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1806055 fabI 321314001984 fabI Salmonella enterica subsp. enterica serovar Choleraesuis str. enoyl-ACP reductase YP_216681.1 1805267 D 321314 CDS YP_216682.1 62180265 1806255..1807175 1 NC_006905.1 hypothetical protein 1807175 yciW 321314001985 yciW Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216682.1 1806255 D 321314 CDS YP_216683.1 62180266 1807477..1809411 1 NC_006905.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1809411 rnb 321314001986 rnb Salmonella enterica subsp. enterica serovar Choleraesuis str. exoribonuclease II YP_216683.1 1807477 D 321314 CDS YP_216684.1 62180267 1809673..1811655 1 NC_006905.1 c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1811655 yciR 321314001987 yciR Salmonella enterica subsp. enterica serovar Choleraesuis str. RNase II stability modulator YP_216684.1 1809673 D 321314 CDS YP_216685.1 62180268 1811744..1811956 1 NC_006905.1 hypothetical protein 1811956 321314001988 SC1698 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216685.1 1811744 D 321314 CDS YP_216686.1 62180269 1812043..1812795 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; DeoR family transcriptional regulator 1812795 yciT 321314001989 yciT Salmonella enterica subsp. enterica serovar Choleraesuis str. DeoR family transcriptional regulator YP_216686.1 1812043 D 321314 CDS YP_216687.1 62180270 1813054..1813272 1 NC_006905.1 lipoprotein 1813272 osmB 321314001990 osmB Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein YP_216687.1 1813054 D 321314 CDS YP_216688.1 62180271 complement(1813392..1813718) 1 NC_006905.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1813718 yciH 321314001991 yciH Salmonella enterica subsp. enterica serovar Choleraesuis str. translation initiation factor Sui1 YP_216688.1 1813392 R 321314 CDS YP_216689.1 62180272 complement(1813718..1814455) 1 NC_006905.1 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1814455 pyrF 321314001992 pyrF Salmonella enterica subsp. enterica serovar Choleraesuis str. orotidine 5'-phosphate decarboxylase YP_216689.1 1813718 R 321314 CDS YP_216690.1 62180273 complement(1814646..1815815) 1 NC_006905.1 IPR001440: TPR repeat; tetratricopeptide repeat protein 1815815 yciM 321314001993 yciM Salmonella enterica subsp. enterica serovar Choleraesuis str. tetratricopeptide repeat protein YP_216690.1 1814646 R 321314 CDS YP_216691.1 62180274 complement(1815822..1816130) 1 NC_006905.1 hypothetical protein 1816130 yciS 321314001994 yciS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216691.1 1815822 R 321314 CDS YP_216692.1 62180275 complement(1816280..1817044) 1 NC_006905.1 IPR000326: PA-phosphatase related phosphoesterase; phosphatidylglycerophosphatase B 1817044 pgpB 321314001995 pgpB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphatidylglycerophosphatase B YP_216692.1 1816280 R 321314 CDS YP_216693.1 62180276 1817240..1817830 1 NC_006905.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1817830 ribA 321314001996 ribA Salmonella enterica subsp. enterica serovar Choleraesuis str. GTP cyclohydrolase II YP_216693.1 1817240 D 321314 CDS YP_216694.1 62180277 complement(1817886..1820561) 1 NC_006905.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1820561 acnA 321314001997 acnA Salmonella enterica subsp. enterica serovar Choleraesuis str. aconitate hydratase YP_216694.1 1817886 R 321314 CDS YP_216695.1 62180278 complement(1820946..1821116) 1 NC_006905.1 hypothetical protein 1821116 321314001998 SC1708 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216695.1 1820946 R 321314 CDS YP_216696.1 62180279 complement(1821117..1821302) 1 NC_006905.1 hypothetical protein 1821302 yciX 321314001999 yciX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216696.1 1821117 R 321314 CDS YP_216697.1 62180280 complement(1821538..1822512) 1 NC_006905.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1822512 cysB 321314002000 cysB Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator CysB YP_216697.1 1821538 R 321314 CDS YP_216698.1 62180281 complement(1822924..1825521) 1 NC_006905.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1825521 topA 321314002001 topA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA topoisomerase I YP_216698.1 1822924 R 321314 CDS YP_216699.1 62180282 1825924..1826175 1 NC_006905.1 hypothetical protein 1826175 yciN 321314002002 yciN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216699.1 1825924 D 321314 CDS YP_216700.1 62180283 complement(1826217..1827263) 1 NC_006905.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 1827263 sohB 321314002003 sohB Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic protease YP_216700.1 1826217 R 321314 CDS YP_216701.1 62180284 1827501..1828262 1 NC_006905.1 IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; short chain dehydrogenase 1828262 yciK 321314002004 yciK Salmonella enterica subsp. enterica serovar Choleraesuis str. short chain dehydrogenase YP_216701.1 1827501 D 321314 CDS YP_216702.1 62180285 1828259..1828849 1 NC_006905.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1828849 btuR 321314002005 btuR Salmonella enterica subsp. enterica serovar Choleraesuis str. cob(I)yrinic acid a,c-diamide adenosyltransferase YP_216702.1 1828259 D 321314 CDS YP_216703.1 62180286 complement(1828936..1829811) 1 NC_006905.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B 1829811 yciL 321314002006 yciL Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA pseudouridylate synthase B YP_216703.1 1828936 R 321314 CDS YP_216704.1 62180287 complement(1829912..1830532) 1 NC_006905.1 IPR004388: Sua5/YciO/YrdC/YwlC; hypothetical protein 1830532 yciO 321314002007 yciO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216704.1 1829912 R 321314 CDS YP_216705.1 62180288 complement(1830540..1831421) 1 NC_006905.1 IPR003141: Phosphoesterase PHP, N-terminal; IPR004013: PHP domain C-terminal region; hypothetical protein 1831421 trpH 321314002008 trpH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216705.1 1830540 R 321314 CDS YP_216706.1 62180289 1831682..1833244 1 NC_006905.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1833244 trpE 321314002009 trpE Salmonella enterica subsp. enterica serovar Choleraesuis str. anthranilate synthase component I YP_216706.1 1831682 D 321314 CDS YP_216707.1 62180290 1833244..1834839 1 NC_006905.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1834839 trpD 321314002010 trpD Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase YP_216707.1 1833244 D 321314 CDS YP_216708.1 62180291 1834843..1836201 1 NC_006905.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1836201 trpC 321314002011 trpC Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_216708.1 1834843 D 321314 CDS YP_216709.1 62180292 1836211..1837404 1 NC_006905.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1837404 trpB 321314002012 trpB Salmonella enterica subsp. enterica serovar Choleraesuis str. tryptophan synthase subunit beta YP_216709.1 1836211 D 321314 CDS YP_216710.1 62180293 1837404..1838210 1 NC_006905.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1838210 trpA 321314002013 trpA Salmonella enterica subsp. enterica serovar Choleraesuis str. tryptophan synthase subunit alpha YP_216710.1 1837404 D 321314 CDS YP_216711.1 62180294 1838690..1838872 1 NC_006905.1 hypothetical protein 1838872 yciG 321314002014 yciG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216711.1 1838690 D 321314 CDS YP_216712.1 62180295 1838962..1839465 1 NC_006905.1 hypothetical protein 1839465 yciF 321314002015 yciF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216712.1 1838962 D 321314 CDS YP_216713.1 62180296 1839539..1840045 1 NC_006905.1 hypothetical protein 1840045 yciE 321314002016 yciE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216713.1 1839539 D 321314 CDS YP_216714.1 62180297 1840065..1840943 1 NC_006905.1 hypothetical protein 1840943 ctjC 321314002017 ctjC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216714.1 1840065 D 321314 CDS YP_216715.1 62180298 complement(1841025..1841663) 1 NC_006905.1 receptor for colicin S4; outer membrane protein W 1841663 ompW 321314002018 ompW Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein W YP_216715.1 1841025 R 321314 CDS YP_216716.1 62180299 1842001..1842405 1 NC_006905.1 hypothetical protein 1842405 ykgJ 321314002019 ykgJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216716.1 1842001 D 321314 CDS YP_216717.1 62180300 1842431..1843174 1 NC_006905.1 hypothetical protein 1843174 yciC 321314002020 yciC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216717.1 1842431 D 321314 CDS YP_216718.1 62180301 1843231..1843770 1 NC_006905.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1843770 yciB 321314002021 yciB Salmonella enterica subsp. enterica serovar Choleraesuis str. intracellular septation protein A YP_216718.1 1843231 D 321314 CDS YP_216719.1 62180302 1843931..1844332 1 NC_006905.1 YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1844332 yciA 321314002022 yciA Salmonella enterica subsp. enterica serovar Choleraesuis str. acyl-CoA thioester hydrolase YP_216719.1 1843931 D 321314 CDS YP_216720.1 62180303 complement(1844391..1845236) 1 NC_006905.1 membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transporter 1845236 tonB 321314002023 tonB Salmonella enterica subsp. enterica serovar Choleraesuis str. transporter YP_216720.1 1844391 R 321314 CDS YP_216721.1 62180304 1845337..1845633 1 NC_006905.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein 1845633 yciI 321314002024 yciI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216721.1 1845337 D 321314 CDS YP_216722.1 62180305 1845993..1847453 1 NC_006905.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1847453 cls 321314002025 cls Salmonella enterica subsp. enterica serovar Choleraesuis str. cardiolipin synthetase YP_216722.1 1845993 D 321314 CDS YP_216723.1 62180306 1847487..1847816 1 NC_006905.1 highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 1847816 yciU 321314002026 yciU Salmonella enterica subsp. enterica serovar Choleraesuis str. dsDNA-mimic protein YP_216723.1 1847487 D 321314 CDS YP_216724.1 62180307 complement(1847864..1848700) 1 NC_006905.1 IPR001622: K+ channel, pore region; IPR003091: Voltage-dependent potassium channel; IPR005820: Cation channel, non-ligand gated; voltage-gated potassium channel 1848700 cikL 321314002027 cikL Salmonella enterica subsp. enterica serovar Choleraesuis str. voltage-gated potassium channel YP_216724.1 1847864 R 321314 CDS YP_216725.1 62180308 complement(1848748..1849752) 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; oligopeptide ABC transporter ATP-binding protein 1849752 oppF 321314002028 oppF Salmonella enterica subsp. enterica serovar Choleraesuis str. oligopeptide ABC transporter ATP-binding protein YP_216725.1 1848748 R 321314 CDS YP_216726.1 62180309 complement(1849749..1850756) 1 NC_006905.1 IPR003439: ABC transporter; oligopeptide ABC transporter ATP-binding protein 1850756 oppD 321314002029 oppD Salmonella enterica subsp. enterica serovar Choleraesuis str. oligopeptide ABC transporter ATP-binding protein YP_216726.1 1849749 R 321314 CDS YP_216727.1 62180310 complement(1850768..1851676) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; oligoeptide ABC transporter 1851676 oppC 321314002030 oppC Salmonella enterica subsp. enterica serovar Choleraesuis str. oligoeptide ABC transporter YP_216727.1 1850768 R 321314 CDS YP_216728.1 62180311 complement(1851691..1852611) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; oligopeptide transporter permease 1852611 oppB 321314002031 oppB Salmonella enterica subsp. enterica serovar Choleraesuis str. oligopeptide transporter permease YP_216728.1 1851691 R 321314 CDS YP_216729.1 62180312 complement(1852733..1854481) 1 NC_006905.1 IPR000914: Bacterial extracellular solute-binding protein, family 5; oligopeptide ABC transporter substrate-binding protein 1854481 oppA 321314002032 oppA Salmonella enterica subsp. enterica serovar Choleraesuis str. oligopeptide ABC transporter substrate-binding protein YP_216729.1 1852733 R 321314 CDS YP_216730.1 62180313 complement(1855130..1855777) 1 NC_006905.1 hypothetical protein 1855777 ychE 321314002033 ychE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216730.1 1855130 R 321314 CDS YP_216731.1 62180314 1856254..1858932 1 NC_006905.1 IPR001670: Iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1858932 adhE 321314002034 adhE Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_216731.1 1856254 D 321314 CDS YP_216732.1 62180315 complement(1859129..1859746) 1 NC_006905.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1859746 tdk 321314002035 tdk Salmonella enterica subsp. enterica serovar Choleraesuis str. thymidine kinase YP_216732.1 1859129 R 321314 CDS YP_216733.1 62180316 1860409..1860822 1 NC_006905.1 IPR001801: Histone-like nucleoid-structuring protein H-NS; global DNA-binding transcriptional dual regulator H-NS 1860822 hns 321314002036 hns Salmonella enterica subsp. enterica serovar Choleraesuis str. global DNA-binding transcriptional dual regulator H-NS YP_216733.1 1860409 D 321314 CDS YP_216734.1 62180317 complement(1860953..1861861) 1 NC_006905.1 together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP-glucose-1-phosphate uridylyltransferase 1861861 galU 321314002037 galU Salmonella enterica subsp. enterica serovar Choleraesuis str. UTP-glucose-1-phosphate uridylyltransferase YP_216734.1 1860953 R 321314 CDS YP_216735.1 62180318 complement(1862064..1863077) 1 NC_006905.1 IPR001789: Response regulator receiver; response regulator of RpoS 1863077 hnr 321314002038 hnr Salmonella enterica subsp. enterica serovar Choleraesuis str. response regulator of RpoS YP_216735.1 1862064 R 321314 CDS YP_216736.1 62180319 complement(1863168..1864073) 1 NC_006905.1 IPR001423: Protein of unknown function UPF0028; IPR002641: Patatin; hypothetical protein 1864073 ychK 321314002039 ychK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216736.1 1863168 R 321314 CDS YP_216737.1 62180320 1864184..1864642 1 NC_006905.1 hypothetical protein 1864642 ychJ 321314002040 ychJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216737.1 1864184 D 321314 CDS YP_216738.2 162139580 1864693..1865535 1 NC_006905.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1865535 purU 321314002041 purU Salmonella enterica subsp. enterica serovar Choleraesuis str. formyltetrahydrofolate deformylase YP_216738.2 1864693 D 321314 CDS YP_216740.1 62180323 complement(1866706..1868235) 1 NC_006905.1 hypothetical protein 1868235 ybeQ 321314002044 ybeQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216740.1 1866706 R 321314 CDS YP_216741.1 62180324 1868220..1868435 1 NC_006905.1 hypothetical protein 1868435 321314002045 SC1754 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216741.1 1868220 D 321314 CDS YP_216742.1 62180325 complement(1868477..1869154) 1 NC_006905.1 nitrate reductase 1, cytochrome b(NR), gamma subunit 1869154 narI 321314002046 narI Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrate reductase 1, cytochrome b(NR), gamma subunit YP_216742.1 1868477 R 321314 CDS YP_216743.1 62180326 complement(1869154..1869864) 1 NC_006905.1 nitrate reductase 1 subunit delta 1869864 narJ 321314002047 narJ Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrate reductase 1 subunit delta YP_216743.1 1869154 R 321314 CDS YP_216744.1 62180327 complement(1869861..1871396) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; nitrate reductase 1, FeS subunit beta 1871396 narH 321314002048 narH Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrate reductase 1, FeS subunit beta YP_216744.1 1869861 R 321314 CDS YP_216745.1 62180328 complement(1871393..1875136) 1 NC_006905.1 IPR001005: Myb DNA-binding domain; IPR006655: Prokaryotic molybdopterin oxidoreductase; nitrate reductase 1 subunit alpha 1875136 narG 321314002049 narG Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrate reductase 1 subunit alpha YP_216745.1 1871393 R 321314 CDS YP_216746.1 62180329 complement(1875524..1876957) 1 NC_006905.1 major facilitator superfamily nitrite extrusion protein 1876957 narK 321314002050 narK Salmonella enterica subsp. enterica serovar Choleraesuis str. major facilitator superfamily nitrite extrusion protein YP_216746.1 1875524 R 321314 CDS YP_216747.1 62180330 1877262..1879058 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR005467: Histidine kinase; nitrate/nitrite sensor protein NarX 1879058 narX 321314002051 narX Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrate/nitrite sensor protein NarX YP_216747.1 1877262 D 321314 CDS YP_216748.1 62180331 1879051..1879701 1 NC_006905.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1879701 narL 321314002052 narL Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator NarL YP_216748.1 1879051 D 321314 CDS YP_216749.1 62180332 complement(1879702..1881231) 1 NC_006905.1 hypothetical protein 1881231 ychP 321314002053 ychP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216749.1 1879702 R 321314 CDS YP_216750.1 62180333 1881303..1881656 1 NC_006905.1 hypothetical protein 1881656 ychN 321314002054 ychN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216750.1 1881303 D 321314 CDS YP_216751.1 62180334 complement(1881736..1881966) 1 NC_006905.1 in Escherichia coli this protein ly regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator 1881966 chaB 321314002055 chaB Salmonella enterica subsp. enterica serovar Choleraesuis str. cation transport regulator YP_216751.1 1881736 R 321314 CDS YP_216752.1 62180335 1882233..1883333 1 NC_006905.1 calcium/sodium:proton antiporter 1883333 chaA 321314002056 chaA Salmonella enterica subsp. enterica serovar Choleraesuis str. calcium/sodium:proton antiporter YP_216752.1 1882233 D 321314 CDS YP_216753.1 62180336 complement(1883387..1884241) 1 NC_006905.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1884241 kdsA 321314002057 kdsA Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-dehydro-3-deoxyphosphooctonate aldolase YP_216753.1 1883387 R 321314 CDS YP_216754.1 62180337 complement(1884279..1885088) 1 NC_006905.1 IPR000504: RNA-binding region RNP-1 (RNA recognition motif); transcriptional regulator 1885088 ychA 321314002058 ychA Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_216754.1 1884279 R 321314 CDS YP_216755.1 62180338 complement(1885092..1885481) 1 NC_006905.1 transcriptional regulator 1885481 sirC 321314002059 sirC Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_216755.1 1885092 R 321314 CDS YP_216756.1 62180339 complement(1885478..1886311) 1 NC_006905.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1886311 hemK 321314002060 hemK Salmonella enterica subsp. enterica serovar Choleraesuis str. N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_216756.1 1885478 R 321314 CDS YP_216757.1 62180340 complement(1886311..1887393) 1 NC_006905.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1887393 prfA 321314002061 prfA Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide chain release factor 1 YP_216757.1 1886311 R 321314 CDS YP_216758.1 62180341 complement(1887434..1888690) 1 NC_006905.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1888690 hemA 321314002062 hemA Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamyl-tRNA reductase YP_216758.1 1887434 R 321314 CDS YP_216759.1 62180342 1889004..1889627 1 NC_006905.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; molecular chaperone LolB 1889627 lolB 321314002063 lolB Salmonella enterica subsp. enterica serovar Choleraesuis str. molecular chaperone LolB YP_216759.1 1889004 D 321314 CDS YP_216760.1 62180343 1889624..1890475 1 NC_006905.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1890475 ipk 321314002064 ipk Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_216760.1 1889624 D 321314 CDS YP_216761.1 62180344 1890675..1891688 1 NC_006905.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1891688 prsA 321314002065 prsA Salmonella enterica subsp. enterica serovar Choleraesuis str. ribose-phosphate pyrophosphokinase YP_216761.1 1890675 D 321314 CDS YP_216762.1 62180345 1891813..1893498 1 NC_006905.1 role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 1893498 ychM 321314002066 ychM Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfate transporter YchM YP_216762.1 1891813 D 321314 CDS YP_216763.1 62180346 complement(1893543..1893821) 1 NC_006905.1 YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein 1893821 ychH 321314002067 ychH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216763.1 1893543 R 321314 CDS YP_216764.1 62180347 1894073..1894681 1 NC_006905.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1894681 pth 321314002068 pth Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidyl-tRNA hydrolase YP_216764.1 1894073 D 321314 CDS YP_216765.1 62180348 1894798..1895889 1 NC_006905.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1895889 ychF 321314002069 ychF Salmonella enterica subsp. enterica serovar Choleraesuis str. GTP-dependent nucleic acid-binding protein EngD YP_216765.1 1894798 D 321314 CDS YP_216766.1 62180349 1896582..1896923 1 NC_006905.1 hypothetical protein 1896923 321314002070 SC1779 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216766.1 1896582 D 321314 CDS YP_216767.1 62180350 1897458..1897763 1 NC_006905.1 hypothetical protein 1897763 321314002071 SC1780 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216767.1 1897458 D 321314 CDS YP_216768.1 62180351 complement(1898239..1899504) 1 NC_006905.1 hypothetical protein 1899504 321314002072 SC1781 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216768.1 1898239 R 321314 CDS YP_216769.1 62180352 1900029..1901117 1 NC_006905.1 IPR001821: Ni-Fe hydrogenase, small subunit; hydrogenase-1 small subunit 1901117 mbhS 321314002073 mbhS Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase-1 small subunit YP_216769.1 1900029 D 321314 CDS YP_216770.1 62180353 1902927..1903658 1 NC_006905.1 IPR000516: Nickel-dependent hydrogenase b-type cytochrome subunit; hydrogenase 1 b-type cytochrome subunit 1903658 cybH 321314002075 cybH Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 1 b-type cytochrome subunit YP_216770.1 1902927 D 321314 CDS YP_216771.1 62180354 1903655..1904251 1 NC_006905.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1904251 hyaD 321314002076 hyaD Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 1 maturation protease YP_216771.1 1903655 D 321314 CDS YP_216772.1 62180355 1904241..1904645 1 NC_006905.1 involved in processing hydrogenases HyaA and HyaB; hydrogenase-1 operon protein HyaE 1904645 hyaE 321314002077 hyaE Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase-1 operon protein HyaE YP_216772.1 1904241 D 321314 CDS YP_216773.1 62180356 1904642..1905490 1 NC_006905.1 hydrogenase-1 protein 1905490 hyaF 321314002078 hyaF Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase-1 protein YP_216773.1 1904642 D 321314 CDS YP_216774.1 62180357 1908270..1908359 1 NC_006905.1 expressed during stationary phase; hypothetical protein 1908359 321314002081 SC1787 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216774.1 1908270 D 321314 CDS YP_216775.1 62180358 1908703..1910028 1 NC_006905.1 IPR000205: NAD-binding site; IPR000209: Peptidase S8, subtilase serine protease; IPR006095: Glu/Leu/Phe/Val dehydrogenase;IPR006096: Glu/Leu/Phe/Val dehydrogenase, C terminal;IPR006097: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; glutamate dehydrogenase 1910028 gdh 321314002082 gdh Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate dehydrogenase YP_216775.1 1908703 D 321314 CDS YP_216776.1 62180359 1910242..1911954 1 NC_006905.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1911954 treA 321314002083 treA Salmonella enterica subsp. enterica serovar Choleraesuis str. trehalase YP_216776.1 1910242 D 321314 CDS YP_216777.1 62180360 complement(1912017..1912271) 1 NC_006905.1 transglycosylase-associated protein 1912271 ymgE 321314002084 ymgE Salmonella enterica subsp. enterica serovar Choleraesuis str. transglycosylase-associated protein YP_216777.1 1912017 R 321314 CDS YP_216778.1 62180361 1912440..1913174 1 NC_006905.1 hypothetical protein 1913174 ycgR 321314002085 ycgR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216778.1 1912440 D 321314 CDS YP_216779.1 62180362 complement(1913188..1913799) 1 NC_006905.1 IPR000189: Prokaryotic transglycosylase, active site; membrane-bound lytic murein transglycosylase E 1913799 emtA 321314002086 emtA Salmonella enterica subsp. enterica serovar Choleraesuis str. membrane-bound lytic murein transglycosylase E YP_216779.1 1913188 R 321314 CDS YP_216780.1 62180363 1913971..1914879 1 NC_006905.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1914879 ldcA 321314002087 ldcA Salmonella enterica subsp. enterica serovar Choleraesuis str. L,D-carboxypeptidase A YP_216780.1 1913971 D 321314 CDS YP_216781.1 62180364 1914982..1916715 1 NC_006905.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1916715 ycgO 321314002088 ycgO Salmonella enterica subsp. enterica serovar Choleraesuis str. potassium/proton antiporter YP_216781.1 1914982 D 321314 CDS YP_216782.1 62180365 complement(1916778..1917848) 1 NC_006905.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 1917848 dadX 321314002089 dadX Salmonella enterica subsp. enterica serovar Choleraesuis str. alanine racemase YP_216782.1 1916778 R 321314 CDS YP_216783.1 62180366 complement(1917862..1919160) 1 NC_006905.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 1919160 dadA 321314002090 dadA Salmonella enterica subsp. enterica serovar Choleraesuis str. D-amino acid dehydrogenase small subunit YP_216783.1 1917862 R 321314 CDS YP_216784.1 62180367 1919483..1921015 1 NC_006905.1 SpoVR family protein 1921015 ycgB 321314002091 ycgB Salmonella enterica subsp. enterica serovar Choleraesuis str. SpoVR family protein YP_216784.1 1919483 D 321314 CDS YP_216785.1 62180368 complement(1921062..1921805) 1 NC_006905.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1921805 fadR 321314002092 fadR Salmonella enterica subsp. enterica serovar Choleraesuis str. fatty acid metabolism regulator YP_216785.1 1921062 R 321314 CDS YP_216786.1 62180369 1922001..1923545 1 NC_006905.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1923545 nhaB 321314002093 nhaB Salmonella enterica subsp. enterica serovar Choleraesuis str. sodium/proton antiporter YP_216786.1 1922001 D 321314 CDS YP_216787.1 62180370 1923687..1924217 1 NC_006905.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1924217 dsbB 321314002094 dsbB Salmonella enterica subsp. enterica serovar Choleraesuis str. disulfide bond formation protein B YP_216787.1 1923687 D 321314 CDS YP_216788.1 62180371 1924326..1924667 1 NC_006905.1 hypothetical protein 1924667 yeaR 321314002095 yeaR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216788.1 1924326 D 321314 CDS YP_216789.1 62180372 complement(1924738..1924911) 1 NC_006905.1 hypothetical protein 1924911 rpmF 321314002096 rpmF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216789.1 1924738 R 321314 CDS YP_216790.1 62180373 complement(1925104..1925241) 1 NC_006905.1 hypothetical protein 1925241 321314002097 SC1803 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216790.1 1925104 R 321314 CDS YP_216791.2 162139579 complement(1925593..1926039) 1 NC_006905.1 hypothetical protein 1926039 ycgN 321314002098 ycgN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216791.2 1925593 R 321314 CDS YP_216792.1 62180375 complement(1926132..1926791) 1 NC_006905.1 hypothetical protein 1926791 ycgM 321314002099 ycgM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216792.1 1926132 R 321314 CDS YP_216793.1 62180376 complement(1926841..1927173) 1 NC_006905.1 IPR007840: Protein of unknown function DUF709; hypothetical protein 1927173 ycgL 321314002100 ycgL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216793.1 1926841 R 321314 CDS YP_216794.1 62180377 1927260..1927967 1 NC_006905.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1927967 minC 321314002101 minC Salmonella enterica subsp. enterica serovar Choleraesuis str. septum formation inhibitor YP_216794.1 1927260 D 321314 CDS YP_216795.1 62180378 1927991..1928803 1 NC_006905.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1928803 minD 321314002102 minD Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division inhibitor MinD YP_216795.1 1927991 D 321314 CDS YP_216796.1 62180379 1928807..1929073 1 NC_006905.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1929073 minE 321314002103 minE Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division topological specificity factor MinE YP_216796.1 1928807 D 321314 CDS YP_216797.1 62180380 complement(1929195..1930322) 1 NC_006905.1 IPR002121: HRDC domain; IPR002562: 3'-5' exonuclease; IPR006292: Ribonuclease D; ribonuclease D 1930322 rnd 321314002104 rnd Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease D YP_216797.1 1929195 R 321314 CDS YP_216798.2 229037909 complement(1930394..1932079) 1 NC_006905.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1932079 fadD 321314002105 fadD Salmonella enterica subsp. enterica serovar Choleraesuis str. long-chain-fatty-acid--CoA ligase YP_216798.2 1930394 R 321314 CDS YP_216799.1 62180382 1932099..1932305 1 NC_006905.1 hypothetical protein 1932305 321314002106 SC1812 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216799.1 1932099 D 321314 CDS YP_216800.1 62180383 complement(1932284..1932865) 1 NC_006905.1 outer membrane protein 1932865 slp 321314002107 slp Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_216800.1 1932284 R 321314 CDS YP_216801.1 62180384 complement(1932937..1933632) 1 NC_006905.1 molecular chaperone 1933632 yeaZ 321314002108 yeaZ Salmonella enterica subsp. enterica serovar Choleraesuis str. molecular chaperone YP_216801.1 1932937 R 321314 CDS YP_216802.1 62180385 complement(1933690..1935600) 1 NC_006905.1 IPR001917: Aminotransferase, class-II; DNA helicase 1935600 yoaA 321314002109 yoaA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA helicase YP_216802.1 1933690 R 321314 CDS YP_216803.1 62180386 1935732..1936076 1 NC_006905.1 IPR006056: YjgF-like protein; hypothetical protein 1936076 yoaB 321314002110 yoaB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216803.1 1935732 D 321314 CDS YP_216804.1 62180387 complement(1936082..1936261) 1 NC_006905.1 hypothetical protein 1936261 yoaH 321314002111 yoaH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216804.1 1936082 R 321314 CDS YP_216805.1 62180388 1936342..1937706 1 NC_006905.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 1937706 pabB 321314002112 pabB Salmonella enterica subsp. enterica serovar Choleraesuis str. para-aminobenzoate synthase component I YP_216805.1 1936342 D 321314 CDS YP_216806.1 62180389 1937710..1938288 1 NC_006905.1 IPR000059: Protein of unknown function UPF0035; hypothetical protein 1938288 yeaB 321314002113 yeaB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216806.1 1937710 D 321314 CDS YP_216807.1 62180390 1938570..1939916 1 NC_006905.1 L-serine deaminase I/L-threonine deaminase I 1939916 sdaA 321314002114 sdaA Salmonella enterica subsp. enterica serovar Choleraesuis str. L-serine deaminase I/L-threonine deaminase I YP_216807.1 1938570 D 321314 CDS YP_216808.1 62180391 1939952..1941655 1 NC_006905.1 IPR001633: EAL domain; hypothetical protein 1941655 yoaD 321314002115 yoaD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216808.1 1939952 D 321314 CDS YP_216809.1 62180392 complement(1941677..1943236) 1 NC_006905.1 inner membrane protein 1943236 yoaE 321314002116 yoaE Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216809.1 1941677 R 321314 CDS YP_216810.1 62180393 complement(1943224..1943559) 1 NC_006905.1 hypothetical protein 1943559 321314002117 SC1823 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216810.1 1943224 R 321314 CDS YP_216811.1 62180394 1943709..1944677 1 NC_006905.1 IPR004720: PTS system sorbose subfamily IIB component; sugar specific PTS family mannose-specific enzyme IIAB 1944677 manX 321314002118 manX Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar specific PTS family mannose-specific enzyme IIAB YP_216811.1 1943709 D 321314 CDS YP_216812.1 62180395 1944730..1945530 1 NC_006905.1 sugar specific PTS family mannose-specific enzyme IIC 1945530 manY 321314002119 manY Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar specific PTS family mannose-specific enzyme IIC YP_216812.1 1944730 D 321314 CDS YP_216813.1 62180396 1945534..1946394 1 NC_006905.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1946394 manZ 321314002120 manZ Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system mannose-specific transporter subunit IID YP_216813.1 1945534 D 321314 CDS YP_216814.1 62180397 1946453..1946911 1 NC_006905.1 hypothetical protein 1946911 yobD 321314002121 yobD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216814.1 1946453 D 321314 CDS YP_216815.1 62180398 1947267..1947887 1 NC_006905.1 membrane protein YebN; hypothetical protein 1947887 yebN 321314002122 yebN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216815.1 1947267 D 321314 CDS YP_216816.1 62180399 complement(1947884..1948693) 1 NC_006905.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase 1948693 rrmA 321314002123 rrmA Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA methyltransferase YP_216816.1 1947884 R 321314 CDS YP_216817.1 62180400 complement(1948758..1950503) 1 NC_006905.1 penicillin-binding protein-3 1950503 ftsI 321314002124 ftsI Salmonella enterica subsp. enterica serovar Choleraesuis str. penicillin-binding protein-3 YP_216817.1 1948758 R 321314 CDS YP_216818.1 62180401 complement(1950723..1950932) 1 NC_006905.1 IPR002059: Cold-shock DNA-binding domain; cold shock-like protein CspC 1950932 cspC 321314002125 cspC Salmonella enterica subsp. enterica serovar Choleraesuis str. cold shock-like protein CspC YP_216818.1 1950723 R 321314 CDS YP_216819.1 62180402 complement(1950945..1951088) 1 NC_006905.1 hypothetical protein 1951088 yobF 321314002126 yobF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216819.1 1950945 R 321314 CDS YP_216820.1 62180403 1951664..1951939 1 NC_006905.1 IPR003220: Insertion element protein; insertion element IS1 1/2/3/5/6 protein insA 1951939 insA 321314002127 insA Salmonella enterica subsp. enterica serovar Choleraesuis str. insertion element IS1 1/2/3/5/6 protein insA YP_216820.1 1951664 D 321314 CDS YP_216821.1 62180404 1951858..1952361 1 NC_006905.1 IPR005063: IS1 transposase; IS1 transposase 1952361 insB 321314002128 insB Salmonella enterica subsp. enterica serovar Choleraesuis str. IS1 transposase YP_216821.1 1951858 D 321314 CDS YP_216822.1 62180405 complement(1952513..1952800) 1 NC_006905.1 hypothetical protein 1952800 yebO 321314002129 yebO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216822.1 1952513 R 321314 CDS YP_216823.1 62180406 complement(1952871..1953014) 1 NC_006905.1 hypothetical protein 1953014 yobG 321314002130 yobG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216823.1 1952871 R 321314 CDS YP_216824.1 62180407 1953172..1953411 1 NC_006905.1 hypothetical protein 1953411 321314002131 SC1837 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216824.1 1953172 D 321314 CDS YP_216825.1 62180408 complement(1953623..1954414) 1 NC_006905.1 IPR005473: Bacterial transcription regulator, ICLR-like family; IclR family transcriptional regulator 1954414 kdgR 321314002132 kdgR Salmonella enterica subsp. enterica serovar Choleraesuis str. IclR family transcriptional regulator YP_216825.1 1953623 R 321314 CDS YP_216826.1 62180409 1954590..1955963 1 NC_006905.1 IPR001411: Tetracycline resistance protein TetB; IPR007114: Major facilitator superfamily; transporter 1955963 yebQ 321314002133 yebQ Salmonella enterica subsp. enterica serovar Choleraesuis str. transporter YP_216826.1 1954590 D 321314 CDS YP_216827.1 62180410 complement(1956011..1956892) 1 NC_006905.1 metalloprotease; heat shock protein HtpX 1956892 htpX 321314002134 htpX Salmonella enterica subsp. enterica serovar Choleraesuis str. heat shock protein HtpX YP_216827.1 1956011 R 321314 CDS YP_216828.1 62180411 complement(1957086..1959134) 1 NC_006905.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1959134 prc 321314002135 prc Salmonella enterica subsp. enterica serovar Choleraesuis str. carboxy-terminal protease YP_216828.1 1957086 R 321314 CDS YP_216829.1 62180412 complement(1959154..1959840) 1 NC_006905.1 affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 1959840 proQ 321314002136 proQ Salmonella enterica subsp. enterica serovar Choleraesuis str. solute/DNA competence effector YP_216829.1 1959154 R 321314 CDS YP_216830.1 62180413 complement(1959938..1960522) 1 NC_006905.1 IPR003018: GAF domain; GAF domain-containing protein 1960522 yebR 321314002137 yebR Salmonella enterica subsp. enterica serovar Choleraesuis str. GAF domain-containing protein YP_216830.1 1959938 R 321314 CDS YP_216831.1 62180414 1960564..1961847 1 NC_006905.1 hypothetical protein 1961847 yebS 321314002138 yebS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216831.1 1960564 D 321314 CDS YP_216832.1 62180415 1961774..1964449 1 NC_006905.1 hypothetical protein 1964449 yebT 321314002139 yebT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216832.1 1961774 D 321314 CDS YP_216833.2 162139578 1964527..1965966 1 NC_006905.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1965966 yebU 321314002140 yebU Salmonella enterica subsp. enterica serovar Choleraesuis str. rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_216833.2 1964527 D 321314 CDS YP_216834.1 62180417 1966081..1966320 1 NC_006905.1 hypothetical protein 1966320 yebV 321314002141 yebV Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216834.1 1966081 D 321314 CDS YP_216835.1 62180418 1966430..1966621 1 NC_006905.1 hypothetical protein 1966621 321314002142 SC1848 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216835.1 1966430 D 321314 CDS YP_216836.2 162139577 complement(1966640..1967290) 1 NC_006905.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 1967290 pphA 321314002143 pphA Salmonella enterica subsp. enterica serovar Choleraesuis str. serine/threonine protein phosphatase 1 YP_216836.2 1966640 R 321314 CDS YP_216837.1 62180420 complement(1967513..1967677) 1 NC_006905.1 inner membrane protein 1967677 321314002144 SC1850 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216837.1 1967513 R 321314 CDS YP_216838.1 62180421 complement(1967739..1967888) 1 NC_006905.1 hypothetical protein 1967888 321314002145 SC1851 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216838.1 1967739 R 321314 CDS YP_216839.1 62180422 complement(1967962..1968684) 1 NC_006905.1 IPR005414: Salmonella type III secretion SopE effector protein; invasion-associated type III-secreted protein effector 1968684 sopE2 321314002146 sopE2 Salmonella enterica subsp. enterica serovar Choleraesuis str. invasion-associated type III-secreted protein effector YP_216839.1 1967962 R 321314 CDS YP_216840.1 62180423 1969368..1969763 1 NC_006905.1 hypothetical protein 1969763 ycgX 321314002147 ycgX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216840.1 1969368 D 321314 CDS YP_216841.1 62180424 1970091..1970567 1 NC_006905.1 hypothetical protein 1970567 321314002148 SC1854 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216841.1 1970091 D 321314 CDS YP_216842.1 62180425 complement(1970940..1971359) 1 NC_006905.1 IPR000182: GCN5-related N-acetyltransferase; acetyltransferase 1971359 bls 321314002149 bls Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyltransferase YP_216842.1 1970940 R 321314 CDS YP_216843.1 62180426 complement(1971488..1971682) 1 NC_006905.1 hypothetical protein 1971682 321314002150 SC1856 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216843.1 1971488 R 321314 CDS YP_216844.1 62180427 1971905..1972051 1 NC_006905.1 hypothetical protein 1972051 321314002151 SC1857 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216844.1 1971905 D 321314 CDS YP_216845.1 62180428 1972164..1972304 1 NC_006905.1 hypothetical protein 1972304 321314002152 SC1858 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216845.1 1972164 D 321314 CDS YP_216846.1 62180429 complement(1972641..1972781) 1 NC_006905.1 transposase 1972781 tnp 321314002153 tnp Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_216846.1 1972641 R 321314 CDS YP_216847.1 62180430 1973747..1974115 1 NC_006905.1 hypothetical protein 1974115 int 321314002155 int Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216847.1 1973747 D 321314 CDS YP_216848.1 62180431 complement(1974550..1974717) 1 NC_006905.1 error-prone repair: component of DNA polymerase V with UmuD' 1974717 umuC 321314002156 umuC Salmonella enterica subsp. enterica serovar Choleraesuis str. error-prone repair: component of DNA polymerase V with UmuD' YP_216848.1 1974550 R 321314 CDS YP_216849.1 62180432 1974734..1975258 1 NC_006905.1 fimbriae usher protein 1975258 stbD 321314002157 stbD Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbriae usher protein YP_216849.1 1974734 D 321314 CDS YP_216850.1 62180433 1976049..1976963 1 NC_006905.1 PhoPQ-activated integral membrane protein 1976963 pagO 321314002158 pagO Salmonella enterica subsp. enterica serovar Choleraesuis str. PhoPQ-activated integral membrane protein YP_216850.1 1976049 D 321314 CDS YP_216851.1 62180434 1977096..1977254 1 NC_006905.1 inner membrane protein 1977254 321314002159 SC1864 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216851.1 1977096 D 321314 CDS YP_216852.1 62180435 1977264..1977878 1 NC_006905.1 inner membrane protein 1977878 321314002160 SC1865 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216852.1 1977264 D 321314 CDS YP_216853.1 62180436 1978078..1978269 1 NC_006905.1 inner membrane lipoprotein 1978269 yebW 321314002161 yebW Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane lipoprotein YP_216853.1 1978078 D 321314 CDS YP_216854.1 62180437 complement(1978287..1980266) 1 NC_006905.1 hydrolase 1980266 yjcS 321314002162 yjcS Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase YP_216854.1 1978287 R 321314 CDS YP_216855.1 62180438 1980662..1981792 1 NC_006905.1 IPR000160: GGDEF; hypothetical protein 1981792 yreP 321314002163 yreP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216855.1 1980662 D 321314 CDS YP_216856.1 62180439 complement(1982079..1982474) 1 NC_006905.1 DNA-binding protein 1982474 321314002164 SC1869 Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding protein YP_216856.1 1982079 R 321314 CDS YP_216859.1 62180442 1984202..1985002 1 NC_006905.1 hypothetical protein 1985002 321314002166 SC1872 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216859.1 1984202 D 321314 CDS YP_216860.1 62180443 complement(1987290..1987865) 1 NC_006905.1 hypothetical protein 1987865 int 321314002168 int Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216860.1 1987290 R 321314 CDS YP_216861.1 62180444 complement(1987953..1988135) 1 NC_006905.1 similar to phage tail assembly protein; Gifsy-1 prophage VtaP 1988135 vtaP 321314002169 vtaP Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage VtaP YP_216861.1 1987953 R 321314 CDS YP_216862.1 62180445 complement(1988215..1988508) 1 NC_006905.1 hypothetical protein 1988508 321314002170 SC1875 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216862.1 1988215 R 321314 CDS YP_216863.1 62180446 1988441..1989181 1 NC_006905.1 phage integrase 1989181 int 321314002171 int Salmonella enterica subsp. enterica serovar Choleraesuis str. phage integrase YP_216863.1 1988441 D 321314 CDS YP_216864.1 62180447 complement(1989378..1989494) 1 NC_006905.1 hypothetical protein 1989494 prpA 321314002172 prpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216864.1 1989378 R 321314 CDS YP_216865.1 62180448 complement(1989555..1989908) 1 NC_006905.1 hypothetical protein 1989908 yebY 321314002173 yebY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216865.1 1989555 R 321314 CDS YP_216866.1 62180449 complement(1989925..1990800) 1 NC_006905.1 IPR000531: TonB-dependent receptor protein; inner membrane protein 1990800 yebZ 321314002174 yebZ Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216866.1 1989925 R 321314 CDS YP_216867.1 62180450 complement(1990801..1991175) 1 NC_006905.1 hypothetical protein 1991175 yobA 321314002175 yobA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216867.1 1990801 R 321314 CDS YP_216868.1 62180451 1991313..1991543 1 NC_006905.1 DNA polymerase III subunit theta 1991543 holE 321314002176 holE Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase III subunit theta YP_216868.1 1991313 D 321314 CDS YP_216869.1 62180452 1991651..1992307 1 NC_006905.1 hypothetical protein 1992307 yobB 321314002177 yobB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216869.1 1991651 D 321314 CDS YP_216870.1 62180453 1992331..1993029 1 NC_006905.1 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1993029 exoX 321314002178 exoX Salmonella enterica subsp. enterica serovar Choleraesuis str. exodeoxyribonuclease X YP_216870.1 1992331 D 321314 CDS YP_216871.1 62180454 complement(1993064..1995115) 1 NC_006905.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 1995115 ptrB 321314002179 ptrB Salmonella enterica subsp. enterica serovar Choleraesuis str. protease 2 YP_216871.1 1993064 R 321314 CDS YP_216872.1 62180455 complement(1995328..1995987) 1 NC_006905.1 hypothetical protein 1995987 yebE 321314002180 yebE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216872.1 1995328 R 321314 CDS YP_216873.1 62180456 complement(1996081..1996434) 1 NC_006905.1 secreted protein; unknown function; hypothetical protein 1996434 yebF 321314002181 yebF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216873.1 1996081 R 321314 CDS YP_216874.1 62180457 complement(1996502..1996792) 1 NC_006905.1 DNA damage-inducible protein YebG 1996792 yebG 321314002182 yebG Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA damage-inducible protein YebG YP_216874.1 1996502 R 321314 CDS YP_216875.1 62180458 1996923..1998101 1 NC_006905.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1998101 purT 321314002183 purT Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoribosylglycinamide formyltransferase 2 YP_216875.1 1996923 D 321314 CDS YP_216876.1 62180459 complement(1998201..1998842) 1 NC_006905.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1998842 eda 321314002184 eda Salmonella enterica subsp. enterica serovar Choleraesuis str. keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_216876.1 1998201 R 321314 CDS YP_216877.1 62180460 complement(1998880..2000190) 1 NC_006905.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2000190 edd 321314002185 edd Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphogluconate dehydratase YP_216877.1 1998880 R 321314 CDS YP_216878.1 62180461 complement(2000927..2002402) 1 NC_006905.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2002402 zwf 321314002186 zwf Salmonella enterica subsp. enterica serovar Choleraesuis str. glucose-6-phosphate 1-dehydrogenase YP_216878.1 2000927 R 321314 CDS YP_216879.1 62180462 2002375..2002560 1 NC_006905.1 hypothetical protein 2002560 321314002187 SC1892 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216879.1 2002375 D 321314 CDS YP_216880.1 62180463 2002744..2003613 1 NC_006905.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2003613 yebK 321314002188 yebK Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator HexR YP_216880.1 2002744 D 321314 CDS YP_216881.1 62180464 2003737..2005179 1 NC_006905.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2005179 pykA 321314002189 pykA Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate kinase YP_216881.1 2003737 D 321314 CDS YP_216882.1 62180465 2005314..2005715 1 NC_006905.1 hypothetical protein 2005715 321314002190 SC1895 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216882.1 2005314 D 321314 CDS YP_216883.1 62180466 2005886..2006569 1 NC_006905.1 integrase 2006569 yis2 321314002191 yis2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_216883.1 2005886 D 321314 CDS YP_216884.1 62180467 complement(2006570..2007625) 1 NC_006905.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2007625 msbB 321314002192 msbB Salmonella enterica subsp. enterica serovar Choleraesuis str. lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_216884.1 2006570 R 321314 CDS YP_216885.1 62180468 complement(2007655..2008974) 1 NC_006905.1 hypothetical protein 2008974 yebA 321314002193 yebA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216885.1 2007655 R 321314 CDS YP_216886.2 162139576 complement(2008990..2009934) 1 NC_006905.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein 2009934 znuA 321314002194 znuA Salmonella enterica subsp. enterica serovar Choleraesuis str. high-affinity zinc transporter periplasmic protein YP_216886.2 2008990 R 321314 CDS YP_216887.2 162139575 2010013..2010768 1 NC_006905.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 2010768 znuC 321314002195 znuC Salmonella enterica subsp. enterica serovar Choleraesuis str. high-affinity zinc transporter ATPase YP_216887.2 2010013 D 321314 CDS YP_216888.1 62180471 2010765..2011550 1 NC_006905.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 2011550 znuB 321314002196 znuB Salmonella enterica subsp. enterica serovar Choleraesuis str. high-affinity zinc transporter membrane protein YP_216888.1 2010765 D 321314 CDS YP_216889.1 62180472 complement(2011629..2012639) 1 NC_006905.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2012639 ruvB 321314002197 ruvB Salmonella enterica subsp. enterica serovar Choleraesuis str. Holliday junction DNA helicase RuvB YP_216889.1 2011629 R 321314 CDS YP_216890.1 62180473 complement(2012648..2013259) 1 NC_006905.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2013259 ruvA 321314002198 ruvA Salmonella enterica subsp. enterica serovar Choleraesuis str. Holliday junction DNA helicase RuvA YP_216890.1 2012648 R 321314 CDS YP_216891.1 62180474 2013625..2014575 1 NC_006905.1 hypothetical protein 2014575 321314002199 SC1904 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216891.1 2013625 D 321314 CDS YP_216892.1 62180475 complement(2014636..2015082) 1 NC_006905.1 hypothetical protein 2015082 321314002200 SC1905 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216892.1 2014636 R 321314 CDS YP_216893.1 62180476 complement(2015809..2016330) 1 NC_006905.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2016330 ruvC 321314002202 ruvC Salmonella enterica subsp. enterica serovar Choleraesuis str. Holliday junction resolvase YP_216893.1 2015809 R 321314 CDS YP_216894.1 62180477 complement(2016367..2017107) 1 NC_006905.1 IPR002876: Protein of unknown function DUF28; hypothetical protein 2017107 yebC 321314002203 yebC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216894.1 2016367 R 321314 CDS YP_216895.1 62180478 complement(2017137..2017589) 1 NC_006905.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 2017589 ntpA 321314002204 ntpA Salmonella enterica subsp. enterica serovar Choleraesuis str. dATP pyrophosphohydrolase YP_216895.1 2017137 R 321314 CDS YP_216896.1 62180479 complement(2017692..2019464) 1 NC_006905.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2019464 aspS 321314002205 aspS Salmonella enterica subsp. enterica serovar Choleraesuis str. aspartyl-tRNA synthetase YP_216896.1 2017692 R 321314 CDS YP_216897.1 62180480 2019789..2020355 1 NC_006905.1 hypothetical protein 2020355 yecD 321314002206 yecD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216897.1 2019789 D 321314 CDS YP_216898.1 62180481 2020352..2021170 1 NC_006905.1 IPR002763: Protein of unknown function DUF72; hypothetical protein 2021170 yecE 321314002207 yecE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216898.1 2020352 D 321314 CDS YP_216899.1 62180482 2021223..2021618 1 NC_006905.1 hypothetical protein 2021618 yecN 321314002208 yecN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216899.1 2021223 D 321314 CDS YP_216900.1 62180483 2021659..2022402 1 NC_006905.1 IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase; hypothetical protein 2022402 yecO 321314002209 yecO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216900.1 2021659 D 321314 CDS YP_216901.1 62180484 2022399..2023370 1 NC_006905.1 hypothetical protein 2023370 yecP 321314002210 yecP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216901.1 2022399 D 321314 CDS YP_216902.1 62180485 complement(2024371..2024940) 1 NC_006905.1 IPR002097: Profilin/allergen; hypothetical protein 2024940 yecM 321314002212 yecM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216902.1 2024371 R 321314 CDS YP_216903.1 62180486 2025177..2026910 1 NC_006905.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2026910 argS 321314002213 argS Salmonella enterica subsp. enterica serovar Choleraesuis str. arginyl-tRNA synthetase YP_216903.1 2025177 D 321314 CDS YP_216904.1 62180487 2027099..2028970 1 NC_006905.1 penicillin-binding protein 2028970 pbpA 321314002214 pbpA Salmonella enterica subsp. enterica serovar Choleraesuis str. penicillin-binding protein YP_216904.1 2027099 D 321314 CDS YP_216905.1 62180488 complement(2029072..2030163) 1 NC_006905.1 hypothetical protein 2030163 321314002215 SC1918 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216905.1 2029072 R 321314 CDS YP_216906.1 62180489 complement(2030400..2030792) 1 NC_006905.1 flagellar protein 2030792 flhE 321314002216 flhE Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar protein YP_216906.1 2030400 R 321314 CDS YP_216907.1 62180490 complement(2030792..2032870) 1 NC_006905.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2032870 flhA 321314002217 flhA Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis protein FlhA YP_216907.1 2030792 R 321314 CDS YP_216908.1 62180491 complement(2032863..2034014) 1 NC_006905.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2034014 flhB 321314002218 flhB Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis protein FlhB YP_216908.1 2032863 R 321314 CDS YP_216909.2 162139574 complement(2034208..2034852) 1 NC_006905.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 2034852 cheZ 321314002219 cheZ Salmonella enterica subsp. enterica serovar Choleraesuis str. chemotaxis regulator CheZ YP_216909.2 2034208 R 321314 CDS YP_216910.1 62180493 complement(2034863..2035252) 1 NC_006905.1 chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY 2035252 cheY 321314002220 cheY Salmonella enterica subsp. enterica serovar Choleraesuis str. chemotaxis regulatory protein CheY YP_216910.1 2034863 R 321314 CDS YP_216911.1 62180494 complement(2035270..2036319) 1 NC_006905.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 2036319 cheB 321314002221 cheB Salmonella enterica subsp. enterica serovar Choleraesuis str. chemotaxis-specific methylesterase YP_216911.1 2035270 R 321314 CDS YP_216912.1 62180495 complement(2036316..2037182) 1 NC_006905.1 methylates the MCP; chemotaxis methyltransferase CheR 2037182 cheR 321314002222 cheR Salmonella enterica subsp. enterica serovar Choleraesuis str. chemotaxis methyltransferase CheR YP_216912.1 2036316 R 321314 CDS YP_216913.1 62180496 complement(2037336..2039228) 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein;IPR004091: Aspartate chemoreceptor protein; methyl accepting chemotaxis protein II, aspartate sensor-receptor 2039228 cheM 321314002223 cheM Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl accepting chemotaxis protein II, aspartate sensor-receptor YP_216913.1 2037336 R 321314 CDS YP_216914.1 62180497 complement(2039234..2039737) 1 NC_006905.1 IPR002545: CheW-like protein; purine-binding chemotaxis protein 2039737 cheW 321314002224 cheW Salmonella enterica subsp. enterica serovar Choleraesuis str. purine-binding chemotaxis protein YP_216914.1 2039234 R 321314 CDS YP_216915.1 62180498 complement(2039758..2041773) 1 NC_006905.1 chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 2041773 cheA 321314002225 cheA Salmonella enterica subsp. enterica serovar Choleraesuis str. chemotaxis protein CheA YP_216915.1 2039758 R 321314 CDS YP_216916.1 62180499 complement(2041778..2042707) 1 NC_006905.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 2042707 motB 321314002226 motB Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar motor protein MotB YP_216916.1 2041778 R 321314 CDS YP_216917.1 62180500 complement(2042704..2043591) 1 NC_006905.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 2043591 motA 321314002227 motA Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar motor protein MotA YP_216917.1 2042704 R 321314 CDS YP_216918.1 62180501 complement(2043716..2044300) 1 NC_006905.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 2044300 flhC 321314002228 flhC Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional activator FlhC YP_216918.1 2043716 R 321314 CDS YP_216919.1 62180502 complement(2044297..2044647) 1 NC_006905.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 2044647 flhD 321314002229 flhD Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional activator FlhD YP_216919.1 2044297 R 321314 CDS YP_216920.1 62180503 2045320..2045436 1 NC_006905.1 hypothetical protein 2045436 321314002230 SC1933 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216920.1 2045320 D 321314 CDS YP_216921.1 62180504 2045433..2045861 1 NC_006905.1 ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspC 2045861 yecG 321314002231 yecG Salmonella enterica subsp. enterica serovar Choleraesuis str. universal stress protein UspC YP_216921.1 2045433 D 321314 CDS YP_216922.1 62180505 complement(2045879..2047300) 1 NC_006905.1 trehalose-6-phosphate synthase 2047300 otsA 321314002232 otsA Salmonella enterica subsp. enterica serovar Choleraesuis str. trehalose-6-phosphate synthase YP_216922.1 2045879 R 321314 CDS YP_216923.1 62180506 complement(2047275..2048078) 1 NC_006905.1 biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase 2048078 otsB 321314002233 otsB Salmonella enterica subsp. enterica serovar Choleraesuis str. trehalose-6-phosphate phosphatase YP_216923.1 2047275 R 321314 CDS YP_216924.1 62180507 complement(2048594..2049151) 1 NC_006905.1 hypothetical protein 2049151 araH 321314002234 araH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216924.1 2048594 R 321314 CDS YP_216925.1 62180508 2049702..2050205 1 NC_006905.1 IPR009040: Ferritin-like; ferritin 2050205 ftnB 321314002235 ftnB Salmonella enterica subsp. enterica serovar Choleraesuis str. ferritin YP_216925.1 2049702 D 321314 CDS YP_216926.1 62180509 complement(2050384..2051022) 1 NC_006905.1 hypothetical protein 2051022 rpi 321314002236 rpi Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216926.1 2050384 R 321314 CDS YP_216927.1 62180510 2051278..2051613 1 NC_006905.1 outer membrane lipoprotein 2051613 yecR 321314002237 yecR Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_216927.1 2051278 D 321314 CDS YP_216928.1 62180511 2051853..2052350 1 NC_006905.1 cytoplasmic iron storage protein; ferritin 2052350 ftn 321314002238 ftn Salmonella enterica subsp. enterica serovar Choleraesuis str. ferritin YP_216928.1 2051853 D 321314 CDS YP_216929.1 62180512 complement(2052396..2052635) 1 NC_006905.1 hypothetical protein 2052635 yecH 321314002239 yecH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216929.1 2052396 R 321314 CDS YP_216930.1 62180513 2052862..2054073 1 NC_006905.1 IPR002091: Aromatic amino acid permease; IPR002422: Amino acid/polyamine transporter family II; HAAAP family tyrosine-specific transport protein 2054073 tyrP 321314002240 tyrP Salmonella enterica subsp. enterica serovar Choleraesuis str. HAAAP family tyrosine-specific transport protein YP_216930.1 2052862 D 321314 CDS YP_216931.1 62180514 complement(2054148..2054813) 1 NC_006905.1 hypothetical protein 2054813 yecA 321314002241 yecA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216931.1 2054148 R 321314 CDS YP_216933.1 62180516 complement(2057243..2057575) 1 NC_006905.1 hypothetical protein 2057575 321314002243 SC1946 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216933.1 2057243 R 321314 CDS YP_216935.1 62180518 complement(2058277..2058825) 1 NC_006905.1 IPR000462: CDP-alcohol phosphatidyltransferase; phosphatidylglycerophosphate synthetase 2058825 pgsA 321314002247 pgsA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphatidylglycerophosphate synthetase YP_216935.1 2058277 R 321314 CDS YP_216936.1 62180519 complement(2058882..2060714) 1 NC_006905.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2060714 uvrC 321314002248 uvrC Salmonella enterica subsp. enterica serovar Choleraesuis str. excinuclease ABC subunit C YP_216936.1 2058882 R 321314 CDS YP_216937.1 62180520 complement(2060711..2061367) 1 NC_006905.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2061367 sirA 321314002249 sirA Salmonella enterica subsp. enterica serovar Choleraesuis str. response regulator YP_216937.1 2060711 R 321314 CDS YP_216938.1 62180521 2061338..2061451 1 NC_006905.1 hypothetical protein 2061451 321314002250 SC1951 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216938.1 2061338 D 321314 CDS YP_216939.1 62180522 2061679..2061834 1 NC_006905.1 hypothetical protein 2061834 321314002251 SC1952 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216939.1 2061679 D 321314 CDS YP_216940.1 62180523 2061831..2062055 1 NC_006905.1 hypothetical protein 2062055 yecF 321314002252 yecF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216940.1 2061831 D 321314 CDS YP_216941.1 62180524 complement(2062122..2062844) 1 NC_006905.1 regulates genes involved in cell division; DNA-binding transcriptional activator SdiA 2062844 sdiA 321314002253 sdiA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator SdiA YP_216941.1 2062122 R 321314 CDS YP_216942.1 62180525 complement(2063077..2063829) 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; amino-acid ABC transporter ATP-binding protein YecC 2063829 yecC 321314002254 yecC Salmonella enterica subsp. enterica serovar Choleraesuis str. amino-acid ABC transporter ATP-binding protein YecC YP_216942.1 2063077 R 321314 CDS YP_216943.1 62180526 complement(2063826..2064494) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC-type amino acid transporter permease component 2064494 yecS 321314002255 yecS Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC-type amino acid transporter permease component YP_216943.1 2063826 R 321314 CDS YP_216944.1 62180527 complement(2064515..2065501) 1 NC_006905.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2065501 yedO 321314002256 yedO Salmonella enterica subsp. enterica serovar Choleraesuis str. D-cysteine desulfhydrase YP_216944.1 2064515 R 321314 CDS YP_216945.1 62180528 complement(2065655..2066413) 1 NC_006905.1 IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; cystine transporter subunit 2066413 fliY 321314002257 fliY Salmonella enterica subsp. enterica serovar Choleraesuis str. cystine transporter subunit YP_216945.1 2065655 R 321314 CDS YP_216946.1 62180529 complement(2066602..2067153) 1 NC_006905.1 expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; flagella biosynthesis protein FliZ 2067153 fliZ 321314002258 fliZ Salmonella enterica subsp. enterica serovar Choleraesuis str. flagella biosynthesis protein FliZ YP_216946.1 2066602 R 321314 CDS YP_216947.1 62180530 complement(2067212..2067931) 1 NC_006905.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 2067931 fliA 321314002259 fliA Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis sigma factor YP_216947.1 2067212 R 321314 CDS YP_216948.1 62180531 complement(2068128..2069333) 1 NC_006905.1 flagellin methylation protein 2069333 fliB 321314002260 fliB Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellin methylation protein YP_216948.1 2068128 R 321314 CDS YP_216949.1 62180532 complement(2069412..2070917) 1 NC_006905.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin 2070917 fliC+F2048 321314002261 fliC+F2048 Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellin YP_216949.1 2069412 R 321314 CDS YP_216950.1 62180533 complement(2070935..2071156) 1 NC_006905.1 hypothetical protein 2071156 321314002262 SC1963 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216950.1 2070935 R 321314 CDS YP_216951.1 62180534 2071174..2072577 1 NC_006905.1 involved in flagellin assembly; flagellar capping protein 2072577 fliD 321314002263 fliD Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar capping protein YP_216951.1 2071174 D 321314 CDS YP_216952.1 62180535 2072592..2072999 1 NC_006905.1 flagellin specific chaperone; flagellar protein FliS 2072999 fliS 321314002264 fliS Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar protein FliS YP_216952.1 2072592 D 321314 CDS YP_216953.1 62180536 2072999..2073367 1 NC_006905.1 binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2073367 fliT 321314002265 fliT Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis protein FliT YP_216953.1 2072999 D 321314 CDS YP_216954.1 62180537 2073439..2074923 1 NC_006905.1 converts 1,4-alpha-D-glucans to maltodextrin; alpha-amylase 2074923 amyA 321314002266 amyA Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha-amylase YP_216954.1 2073439 D 321314 CDS YP_216955.1 62180538 complement(2074963..2075376) 1 NC_006905.1 hypothetical protein 2075376 yedD 321314002267 yedD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216955.1 2074963 R 321314 CDS YP_216956.1 62180539 2075502..2076767 1 NC_006905.1 inner membrane protein 2076767 yedE 321314002268 yedE Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_216956.1 2075502 D 321314 CDS YP_216957.1 62180540 2076764..2076997 1 NC_006905.1 IPR001455: Protein of unknown function UPF0033; hypothetical protein 2076997 yedF 321314002269 yedF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216957.1 2076764 D 321314 CDS YP_216958.1 62180541 2077295..2077648 1 NC_006905.1 hypothetical protein 2077648 321314002270 SC1971 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216958.1 2077295 D 321314 CDS YP_216959.1 62180542 complement(2077769..2078083) 1 NC_006905.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 2078083 fliE 321314002271 fliE Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar hook-basal body protein FliE YP_216959.1 2077769 R 321314 CDS YP_216960.1 62180543 complement(2078130..2078279) 1 NC_006905.1 hypothetical protein 2078279 321314002272 SC1973 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216960.1 2078130 R 321314 CDS YP_216961.1 62180544 2078300..2079982 1 NC_006905.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2079982 fliF 321314002273 fliF Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar MS-ring protein YP_216961.1 2078300 D 321314 CDS YP_216962.1 62180545 2079975..2080970 1 NC_006905.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2080970 fliG 321314002274 fliG Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar motor switch protein G YP_216962.1 2079975 D 321314 CDS YP_216963.1 62180546 2080963..2081670 1 NC_006905.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2081670 fliH 321314002275 fliH Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar assembly protein H YP_216963.1 2080963 D 321314 CDS YP_216964.1 62180547 2081670..2083040 1 NC_006905.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2083040 fliI 321314002276 fliI Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellum-specific ATP synthase YP_216964.1 2081670 D 321314 CDS YP_216965.1 62180548 2083062..2083505 1 NC_006905.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 2083505 fliJ 321314002277 fliJ Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis chaperone YP_216965.1 2083062 D 321314 CDS YP_216966.1 62180549 2083502..2084719 1 NC_006905.1 IPR001635: Flagellar hook-length control protein; flagellar hook-length control protein 2084719 fliK 321314002278 fliK Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar hook-length control protein YP_216966.1 2083502 D 321314 CDS YP_216967.2 162139573 2084824..2085291 1 NC_006905.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body protein FliL 2085291 fliL 321314002279 fliL Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar basal body protein FliL YP_216967.2 2084824 D 321314 CDS YP_216968.1 62180551 2085296..2086300 1 NC_006905.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2086300 fliM 321314002280 fliM Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar motor switch protein FliM YP_216968.1 2085296 D 321314 CDS YP_216969.1 62180552 2086297..2086710 1 NC_006905.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2086710 fliN 321314002281 fliN Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar motor switch protein FliN YP_216969.1 2086297 D 321314 CDS YP_216970.1 62180553 2086710..2087087 1 NC_006905.1 with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 2087087 fliO 321314002282 fliO Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis protein FliO YP_216970.1 2086710 D 321314 CDS YP_216971.1 62180554 2087087..2087824 1 NC_006905.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2087824 fliP 321314002283 fliP Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis protein FliP YP_216971.1 2087087 D 321314 CDS YP_216972.1 62180555 2087834..2088103 1 NC_006905.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2088103 fliQ 321314002284 fliQ Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis protein FliQ YP_216972.1 2087834 D 321314 CDS YP_216973.1 62180556 2088112..2088906 1 NC_006905.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2088906 fliR 321314002285 fliR Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis protein FliR YP_216973.1 2088112 D 321314 CDS YP_216974.1 62180557 2089188..2089811 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; capsular/exo- polysaccharide synthesis transcriptional regulator 2089811 rcsA 321314002286 rcsA Salmonella enterica subsp. enterica serovar Choleraesuis str. capsular/exo- polysaccharide synthesis transcriptional regulator YP_216974.1 2089188 D 321314 CDS YP_216975.1 62180558 complement(2089850..2090044) 1 NC_006905.1 hypothetical protein 2090044 dsrB 321314002287 dsrB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216975.1 2089850 R 321314 CDS YP_216976.1 62180559 2090173..2090400 1 NC_006905.1 hypothetical protein 2090400 yodD 321314002288 yodD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216976.1 2090173 D 321314 CDS YP_216977.1 62180560 2090710..2091525 1 NC_006905.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2091525 yedP 321314002289 yedP Salmonella enterica subsp. enterica serovar Choleraesuis str. mannosyl-3-phosphoglycerate phosphatase YP_216977.1 2090710 D 321314 CDS YP_216978.1 62180561 complement(2091504..2093216) 1 NC_006905.1 IPR000160: GGDEF; hypothetical protein 2093216 yedQ 321314002290 yedQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216978.1 2091504 R 321314 CDS YP_216979.1 62180562 complement(2093381..2093626) 1 NC_006905.1 hypothetical protein 2093626 yodC 321314002291 yodC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216979.1 2093381 R 321314 CDS YP_216980.1 62180563 2094730..2095650 1 NC_006905.1 hypothetical protein 2095650 yedA 321314002293 yedA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216980.1 2094730 D 321314 CDS YP_216981.1 62180564 complement(2095639..2096109) 1 NC_006905.1 IPR004603: DNA mismatch endonuclease vsr; DNA mismatch endonuclease, patch repair protein 2096109 vsr 321314002294 vsr Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA mismatch endonuclease, patch repair protein YP_216981.1 2095639 R 321314 CDS YP_216982.1 62180565 complement(2096090..2097520) 1 NC_006905.1 IPR001525: C-5 cytosine-specific DNA methylase; DNA cytosine methylase 2097520 dcm 321314002295 dcm Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA cytosine methylase YP_216982.1 2096090 R 321314 CDS YP_216983.1 62180566 complement(2097594..2098289) 1 NC_006905.1 hypothetical protein 2098289 yedJ 321314002296 yedJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216983.1 2097594 R 321314 CDS YP_216984.1 62180567 complement(2098369..2098680) 1 NC_006905.1 hypothetical protein 2098680 yedR 321314002297 yedR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216984.1 2098369 R 321314 CDS YP_216985.1 62180568 2099330..2100523 1 NC_006905.1 IPR001702: Porin, Gram-negative type; IPR001897: Porin, bacterial type; porin 2100523 ompS 321314002298 ompS Salmonella enterica subsp. enterica serovar Choleraesuis str. porin YP_216985.1 2099330 D 321314 CDS YP_216986.1 62180569 complement(2100782..2101192) 1 NC_006905.1 IPR002059: Cold-shock DNA-binding domain; cold-shock protein 2101192 cspB 321314002299 cspB Salmonella enterica subsp. enterica serovar Choleraesuis str. cold-shock protein YP_216986.1 2100782 R 321314 CDS YP_216987.1 62180570 complement(2101647..2102915) 1 NC_006905.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 2102915 umuC 321314002300 umuC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase V subunit UmuC YP_216987.1 2101647 R 321314 CDS YP_216988.1 62180571 complement(2102918..2103337) 1 NC_006905.1 binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD 2103337 umuD 321314002301 umuD Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase V subunit UmuD YP_216988.1 2102918 R 321314 CDS YP_216989.1 62180572 complement(2103464..2103625) 1 NC_006905.1 hypothetical protein 2103625 321314002302 SC2002 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216989.1 2103464 R 321314 CDS YP_216990.1 62180573 2104086..2104817 1 NC_006905.1 IPR006025: Neutral zinc metallopeptidases, zinc-binding site; hypothetical protein 2104817 yeeI 321314002304 yeeI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216990.1 2104086 D 321314 CDS YP_216991.1 62180574 2105173..2105343 1 NC_006905.1 hypothetical protein 2105343 321314002306 SC2004 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216991.1 2105173 D 321314 CDS YP_216992.1 62180575 2105357..2105545 1 NC_006905.1 P4-type integrase 2105545 int 321314002307 int Salmonella enterica subsp. enterica serovar Choleraesuis str. P4-type integrase YP_216992.1 2105357 D 321314 CDS YP_216993.1 62180576 complement(2105552..2105656) 1 NC_006905.1 hypothetical protein 2105656 321314002308 SC2006 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216993.1 2105552 R 321314 CDS YP_216995.1 62180578 2107147..2107845 1 NC_006905.1 branched chain amino acid transport protein 2107845 321314002311 SC2008 Salmonella enterica subsp. enterica serovar Choleraesuis str. branched chain amino acid transport protein YP_216995.1 2107147 D 321314 CDS YP_216996.1 62180579 2107730..2107978 1 NC_006905.1 hypothetical protein 2107978 321314002312 SC2009 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216996.1 2107730 D 321314 CDS YP_216997.1 62180580 complement(2108166..2108324) 1 NC_006905.1 hypothetical protein 2108324 321314002313 SC2010 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216997.1 2108166 R 321314 CDS YP_216998.1 62180581 2108419..2110356 1 NC_006905.1 hypothetical protein 2110356 ybeQ 321314002314 ybeQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_216998.1 2108419 D 321314 CDS YP_217000.1 62180583 2112174..2112308 1 NC_006905.1 hypothetical protein 2112308 321314002315 SC2013 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217000.1 2112174 D 321314 CDS YP_217001.1 62180584 complement(2112201..2112305) 1 NC_006905.1 hypothetical protein 2112305 yajQ 321314002316 yajQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217001.1 2112201 R 321314 CDS YP_217002.1 62180585 2112353..2112526 1 NC_006905.1 hypothetical protein 2112526 321314002317 SC2015 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217002.1 2112353 D 321314 CDS YP_217003.1 62180586 complement(2112677..2112931) 1 NC_006905.1 hypothetical protein 2112931 321314002318 SC2016 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217003.1 2112677 R 321314 CDS YP_217004.1 62180587 complement(2113048..2114502) 1 NC_006905.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 2114502 amn 321314002319 amn Salmonella enterica subsp. enterica serovar Choleraesuis str. AMP nucleosidase YP_217004.1 2113048 R 321314 CDS YP_217005.1 62180588 complement(2114698..2115024) 1 NC_006905.1 hypothetical protein 2115024 321314002320 SC2018 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217005.1 2114698 R 321314 CDS YP_217006.1 62180589 complement(2115018..2115404) 1 NC_006905.1 hypothetical protein 2115404 321314002321 SC2019 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217006.1 2115018 R 321314 CDS YP_217008.2 162139572 complement(2116117..2117574) 1 NC_006905.1 hypothetical protein 2117574 yeeO 321314002323 yeeO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217008.2 2116117 R 321314 CDS YP_217009.1 62180592 complement(2117814..2117984) 1 NC_006905.1 hypothetical protein 2117984 321314002325 SC2022 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217009.1 2117814 R 321314 CDS YP_217010.1 62180593 complement(2118035..2118964) 1 NC_006905.1 hypothetical protein 2118964 erfK 321314002326 erfK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217010.1 2118035 R 321314 CDS YP_217011.1 62180594 complement(2119042..2120142) 1 NC_006905.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2120142 cobT 321314002327 cobT Salmonella enterica subsp. enterica serovar Choleraesuis str. nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_217011.1 2119042 R 321314 CDS YP_217012.1 62180595 complement(2120139..2120882) 1 NC_006905.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 2120882 cobS 321314002328 cobS Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalamin synthase YP_217012.1 2120139 R 321314 CDS YP_217013.1 62180596 complement(2120879..2121424) 1 NC_006905.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase 2121424 cobU 321314002329 cobU Salmonella enterica subsp. enterica serovar Choleraesuis str. adenosylcobinamide kinase YP_217013.1 2120879 R 321314 CDS YP_217014.1 62180597 complement(2121421..2122941) 1 NC_006905.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2122941 cbiP 321314002330 cbiP Salmonella enterica subsp. enterica serovar Choleraesuis str. cobyric acid synthase YP_217014.1 2121421 R 321314 CDS YP_217015.1 62180598 complement(2122938..2123579) 1 NC_006905.1 IPR003439: ABC transporter; synthesis of vitamin B12 adenosyl cobalamide 2123579 cbiO 321314002331 cbiO Salmonella enterica subsp. enterica serovar Choleraesuis str. synthesis of vitamin B12 adenosyl cobalamide YP_217015.1 2122938 R 321314 CDS YP_217016.1 62180599 complement(2123762..2124442) 1 NC_006905.1 synthesis of vitamin B12 adenosyl cobalamide 2124442 cboQ 321314002332 cboQ Salmonella enterica subsp. enterica serovar Choleraesuis str. synthesis of vitamin B12 adenosyl cobalamide YP_217016.1 2123762 R 321314 CDS YP_217017.1 62180600 complement(2124426..2124707) 1 NC_006905.1 periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 2124707 cbiN 321314002333 cbiN Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalt transport protein CbiN YP_217017.1 2124426 R 321314 CDS YP_217018.2 162139571 complement(2124709..2125356) 1 NC_006905.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 2125356 cbiM 321314002334 cbiM Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalt transport protein CbiM YP_217018.2 2124709 R 321314 CDS YP_217019.1 62180602 complement(2125443..2126156) 1 NC_006905.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 2126156 cbiL 321314002335 cbiL Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalt-precorrin-2 C(20)-methyltransferase YP_217019.1 2125443 R 321314 CDS YP_217020.1 62180603 complement(2126153..2126947) 1 NC_006905.1 IPR000508: Signal peptidase; synthesis of vitamin B12 adenosyl cobalamide 2126947 cbiK 321314002336 cbiK Salmonella enterica subsp. enterica serovar Choleraesuis str. synthesis of vitamin B12 adenosyl cobalamide YP_217020.1 2126153 R 321314 CDS YP_217021.1 62180604 complement(2126950..2127741) 1 NC_006905.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2127741 cbiJ 321314002337 cbiJ Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalt-precorrin-6x reductase YP_217021.1 2126950 R 321314 CDS YP_217022.1 62180605 complement(2127738..2128463) 1 NC_006905.1 catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C(17)-methyltransferase 2128463 cbiH 321314002338 cbiH Salmonella enterica subsp. enterica serovar Choleraesuis str. precorrin-3B C(17)-methyltransferase YP_217022.1 2127738 R 321314 CDS YP_217023.1 62180606 complement(2128463..2129518) 1 NC_006905.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 2129518 cbiG 321314002339 cbiG Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalamin biosynthesis protein CbiG YP_217023.1 2128463 R 321314 CDS YP_217024.1 62180607 complement(2129499..2130272) 1 NC_006905.1 IPR003043: Uroporphiryn-III C-methyltransferase; synthesis of vitamin B12 adenosyl cobalamide 2130272 cbiF 321314002340 cbiF Salmonella enterica subsp. enterica serovar Choleraesuis str. synthesis of vitamin B12 adenosyl cobalamide YP_217024.1 2129499 R 321314 CDS YP_217025.1 62180608 complement(2130256..2130834) 1 NC_006905.1 catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase 2130834 cbiT 321314002341 cbiT Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalt-precorrin-6Y C(15)-methyltransferase YP_217025.1 2130256 R 321314 CDS YP_217026.1 62180609 complement(2130824..2131429) 1 NC_006905.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase 2131429 cbiE 321314002342 cbiE Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalt-precorrin-6Y C(5)-methyltransferase YP_217026.1 2130824 R 321314 CDS YP_217027.1 62180610 complement(2131423..2132562) 1 NC_006905.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2132562 cbiD 321314002343 cbiD Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalt-precorrin-6A synthase YP_217027.1 2131423 R 321314 CDS YP_217028.1 62180611 complement(2132562..2133194) 1 NC_006905.1 catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase 2133194 cbiC 321314002344 cbiC Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalt-precorrin-8X methylmutase YP_217028.1 2132562 R 321314 CDS YP_217029.1 62180612 complement(2133205..2134164) 1 NC_006905.1 CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 2134164 cbiB 321314002345 cbiB Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalamin biosynthesis protein YP_217029.1 2133205 R 321314 CDS YP_217030.1 62180613 complement(2134161..2135540) 1 NC_006905.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2135540 cbiA 321314002346 cbiA Salmonella enterica subsp. enterica serovar Choleraesuis str. cobyrinic acid a,c-diamide synthase YP_217030.1 2134161 R 321314 CDS YP_217031.1 62180614 complement(2136138..2137049) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; propanediol utilization transcriptional regulator 2137049 pocR 321314002347 pocR Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization transcriptional regulator YP_217031.1 2136138 R 321314 CDS YP_217032.1 62180615 complement(2137266..2138378) 1 NC_006905.1 IPR000425: MIP family; propanediol utilization propanediol diffusion facilitator 2138378 pduF 321314002348 pduF Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization propanediol diffusion facilitator YP_217032.1 2137266 R 321314 CDS YP_217033.1 62180616 2138585..2138869 1 NC_006905.1 IPR000249: Bacterial microcompartments protein; propanediol utilization polyhedral bodies protein 2138869 pduA 321314002349 pduA Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization polyhedral bodies protein YP_217033.1 2138585 D 321314 CDS YP_217034.1 62180617 2138866..2139678 1 NC_006905.1 propanediol utilization polyhedral bodies protein 2139678 pudB 321314002350 pudB Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization polyhedral bodies protein YP_217034.1 2138866 D 321314 CDS YP_217035.1 62180618 2139697..2141361 1 NC_006905.1 IPR003206: Dehydratase, large subunit; propanediol utilization dehydratase large subunit 2141361 pduC 321314002351 pduC Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization dehydratase large subunit YP_217035.1 2139697 D 321314 CDS YP_217036.1 62180619 2141372..2142046 1 NC_006905.1 propanediol utilization dehydratase, medium subunit 2142046 pduD 321314002352 pduD Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization dehydratase, medium subunit YP_217036.1 2141372 D 321314 CDS YP_217037.1 62180620 2142061..2142582 1 NC_006905.1 propanediol utilization dehydratase small subunit 2142582 pduE 321314002353 pduE Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization dehydratase small subunit YP_217037.1 2142061 D 321314 CDS YP_217038.1 62180621 2142598..2144430 1 NC_006905.1 propanediol utilization diol dehydratase reactivation protein 2144430 pduG 321314002354 pduG Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization diol dehydratase reactivation protein YP_217038.1 2142598 D 321314 CDS YP_217039.1 62180622 2144420..2144770 1 NC_006905.1 propanediol utilization diol dehydratase reactivation protein 2144770 pduH 321314002355 pduH Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization diol dehydratase reactivation protein YP_217039.1 2144420 D 321314 CDS YP_217040.1 62180623 2144789..2145064 1 NC_006905.1 IPR000249: Bacterial microcompartments protein; propanediol utilization polyhedral bodies protein 2145064 pduJ 321314002356 pduJ Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization polyhedral bodies protein YP_217040.1 2144789 D 321314 CDS YP_217041.1 62180624 2145068..2145550 1 NC_006905.1 IPR000249: Bacterial microcompartments protein; propanediol utilization polyhedral bodies protein 2145550 pduK 321314002357 pduK Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization polyhedral bodies protein YP_217041.1 2145068 D 321314 CDS YP_217042.1 62180625 2145550..2146182 1 NC_006905.1 hypothetical protein 2146182 pduL 321314002358 pduL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217042.1 2145550 D 321314 CDS YP_217043.1 62180626 2146179..2146670 1 NC_006905.1 hypothetical protein 2146670 pduM 321314002359 pduM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217043.1 2146179 D 321314 CDS YP_217044.1 62180627 2146674..2146949 1 NC_006905.1 IPR004992: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; propanediol utilization polyhedral bodies protein 2146949 pduN 321314002360 pduN Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization polyhedral bodies protein YP_217044.1 2146674 D 321314 CDS YP_217045.1 62180628 2146959..2147969 1 NC_006905.1 IPR002779: Protein of unknown function DUF80; hypothetical protein 2147969 pduO 321314002361 pduO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217045.1 2146959 D 321314 CDS YP_217046.1 62180629 2147966..2149360 1 NC_006905.1 propanediol utilization CoA-dependent propionaldehyde dehydrogenase 2149360 pduP 321314002362 pduP Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization CoA-dependent propionaldehyde dehydrogenase YP_217046.1 2147966 D 321314 CDS YP_217047.1 62180630 2149372..2150484 1 NC_006905.1 IPR001670: Iron-containing alcohol dehydrogenase; propanediol utilization propanol dehydrogenase 2150484 pduQ 321314002363 pduQ Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization propanol dehydrogenase YP_217047.1 2149372 D 321314 CDS YP_217048.1 62180631 2150481..2151836 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; propanediol utilization polyhedral bodies protein 2151836 pduS 321314002364 pduS Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization polyhedral bodies protein YP_217048.1 2150481 D 321314 CDS YP_217049.1 62180632 2151839..2152168 1 NC_006905.1 IPR000249: Bacterial microcompartments protein; propanediol utilization polyhedral bodies protein 2152168 pduT 321314002365 pduT Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization polyhedral bodies protein YP_217049.1 2151839 D 321314 CDS YP_217051.1 62180634 2152149..2152292 1 NC_006905.1 propanediol utilization polyhedral bodies protein 2152292 pduU 321314002366 pduU Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization polyhedral bodies protein YP_217051.1 2152149 D 321314 CDS YP_217052.1 62180635 2152297..2152749 1 NC_006905.1 propanediol utilization 2152749 pduV 321314002367 pduV Salmonella enterica subsp. enterica serovar Choleraesuis str. propanediol utilization YP_217052.1 2152297 D 321314 CDS YP_217053.1 62180636 2152734..2153948 1 NC_006905.1 involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol; propionate kinase 2153948 pduW 321314002368 pduW Salmonella enterica subsp. enterica serovar Choleraesuis str. propionate kinase YP_217053.1 2152734 D 321314 CDS YP_217054.1 62180637 2154006..2154908 1 NC_006905.1 IPR006204: GHMP kinase; hypothetical protein 2154908 pduX 321314002369 pduX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217054.1 2154006 D 321314 CDS YP_217055.1 62180638 complement(2154942..2155277) 1 NC_006905.1 hypothetical protein 2155277 yeeX 321314002370 yeeX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217055.1 2154942 R 321314 CDS YP_217056.1 62180639 complement(2155522..2156580) 1 NC_006905.1 hypothetical protein 2156580 yeeA 321314002371 yeeA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217056.1 2155522 R 321314 CDS YP_217057.1 62180640 complement(2156699..2157166) 1 NC_006905.1 DNA gyrase inhibitor 2157166 sbmC 321314002372 sbmC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA gyrase inhibitor YP_217057.1 2156699 R 321314 CDS YP_217058.1 62180641 complement(2157317..2158489) 1 NC_006905.1 removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 2158489 dacD 321314002373 dacD Salmonella enterica subsp. enterica serovar Choleraesuis str. D-alanyl-D-alanine carboxypeptidase YP_217058.1 2157317 R 321314 CDS YP_217059.1 62180642 complement(2158613..2159377) 1 NC_006905.1 hydrogen sulfide production: membrane anchoring protein 2159377 321314002374 SC2072 Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogen sulfide production: membrane anchoring protein YP_217059.1 2158613 R 321314 CDS YP_217060.1 62180643 complement(2159374..2159952) 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; hydrogen sulfide production: iron- sulfur subunit; electron transfer 2159952 phsB 321314002375 phsB Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogen sulfide production: iron- sulfur subunit; electron transfer YP_217060.1 2159374 R 321314 CDS YP_217061.1 62180644 complement(2159967..2162243) 1 NC_006905.1 IPR006655: Prokaryotic molybdopterin oxidoreductase; hydrogen sulfide production: membrane anchoring protein 2162243 phsA 321314002376 phsA Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogen sulfide production: membrane anchoring protein YP_217061.1 2159967 R 321314 CDS YP_217062.1 62180645 complement(2162487..2162633) 1 NC_006905.1 orfB; hypothetical protein 2162633 321314002377 SC2075 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217062.1 2162487 R 321314 CDS YP_217063.1 62180646 2163504..2165207 1 NC_006905.1 hypothetical protein 2165207 sopA 321314002378 sopA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217063.1 2163504 D 321314 CDS YP_217064.1 62180647 2165574..2167004 1 NC_006905.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2167004 sbcB 321314002379 sbcB Salmonella enterica subsp. enterica serovar Choleraesuis str. exonuclease I YP_217064.1 2165574 D 321314 CDS YP_217065.1 62180648 complement(2167140..2168504) 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; IPR004841: Amino acid permease-associated region; amino acid APC transporter 2168504 yeeF 321314002380 yeeF Salmonella enterica subsp. enterica serovar Choleraesuis str. amino acid APC transporter YP_217065.1 2167140 R 321314 CDS YP_217066.1 62180649 complement(2168784..2169698) 1 NC_006905.1 LysR family transcriptional regulator 2169698 yeeY 321314002381 yeeY Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_217066.1 2168784 R 321314 CDS YP_217067.1 62180650 complement(2169744..2170568) 1 NC_006905.1 hypothetical protein 2170568 yeeZ 321314002382 yeeZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217067.1 2169744 R 321314 CDS YP_217068.1 62180651 2170918..2171817 1 NC_006905.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2171817 hisG 321314002383 hisG Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP phosphoribosyltransferase YP_217068.1 2170918 D 321314 CDS YP_217069.1 62180652 2171920..2173224 1 NC_006905.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2173224 hisD 321314002384 hisD Salmonella enterica subsp. enterica serovar Choleraesuis str. histidinol dehydrogenase YP_217069.1 2171920 D 321314 CDS YP_217070.1 62180653 2173221..2174300 1 NC_006905.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2174300 321314002385 SC2083 Salmonella enterica subsp. enterica serovar Choleraesuis str. histidinol-phosphate aminotransferase YP_217070.1 2173221 D 321314 CDS YP_217071.1 62180654 2174297..2175364 1 NC_006905.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2175364 hisB 321314002386 hisB Salmonella enterica subsp. enterica serovar Choleraesuis str. imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_217071.1 2174297 D 321314 CDS YP_217072.1 62180655 2175361..2175954 1 NC_006905.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2175954 hisH 321314002387 hisH Salmonella enterica subsp. enterica serovar Choleraesuis str. imidazole glycerol phosphate synthase subunit HisH YP_217072.1 2175361 D 321314 CDS YP_217073.1 62180656 2175954..2176691 1 NC_006905.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2176691 hisA 321314002388 hisA Salmonella enterica subsp. enterica serovar Choleraesuis str. 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_217073.1 2175954 D 321314 CDS YP_217074.1 62180657 2176673..2177449 1 NC_006905.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2177449 hisF 321314002389 hisF Salmonella enterica subsp. enterica serovar Choleraesuis str. imidazole glycerol phosphate synthase subunit HisF YP_217074.1 2176673 D 321314 CDS YP_217075.1 62180658 2177443..2178054 1 NC_006905.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2178054 hisI 321314002390 hisI Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_217075.1 2177443 D 321314 CDS YP_217076.1 62180659 complement(2178135..2179172) 1 NC_006905.1 regulator of length of O-antigen component of lipopolysaccharide chains 2179172 wzzB 321314002391 wzzB Salmonella enterica subsp. enterica serovar Choleraesuis str. regulator of length of O-antigen component of lipopolysaccharide chains YP_217076.1 2178135 R 321314 CDS YP_217077.1 62180660 complement(2179261..2180427) 1 NC_006905.1 UDP-glucose/GDP-mannose dehydrogenase 2180427 udg 321314002392 udg Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-glucose/GDP-mannose dehydrogenase YP_217077.1 2179261 R 321314 CDS YP_217078.1 62180661 complement(2180664..2182070) 1 NC_006905.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2182070 gnd 321314002393 gnd Salmonella enterica subsp. enterica serovar Choleraesuis str. 6-phosphogluconate dehydrogenase YP_217078.1 2180664 R 321314 CDS YP_217079.1 62180662 complement(2182207..2183733) 1 NC_006905.1 hypothetical protein 2183733 321314002394 SC2092 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217079.1 2182207 R 321314 CDS YP_217080.1 62180663 complement(2184019..2185389) 1 NC_006905.1 IPR005841: Phosphoglucomutase/phosphomannomutase; phosphomannomutase 2185389 manB 321314002395 manB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphomannomutase YP_217080.1 2184019 R 321314 CDS YP_217081.1 62180664 complement(2185404..2186822) 1 NC_006905.1 IPR001538: Mannose-6-phosphate isomerase, type II; IPR002048: Calcium-binding EF-hand; IPR007113: Cupin domain; phosphomannomutase 2186822 manC 321314002396 manC Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphomannomutase YP_217081.1 2185404 R 321314 CDS YP_217082.1 62180665 complement(2186819..2188051) 1 NC_006905.1 hypothetical protein 2188051 321314002397 SC2095 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217082.1 2186819 R 321314 CDS YP_217083.1 62180666 complement(2188005..2189012) 1 NC_006905.1 hypothetical protein 2189012 321314002398 SC2096 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217083.1 2188005 R 321314 CDS YP_217084.1 62180667 complement(2188996..2189997) 1 NC_006905.1 hypothetical protein 2189997 321314002399 SC2097 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217084.1 2188996 R 321314 CDS YP_217085.1 62180668 complement(2189997..2191076) 1 NC_006905.1 IPR001064: Beta and gamma crystallin; O-antigen polymerase 2191076 321314002400 SC2098 Salmonella enterica subsp. enterica serovar Choleraesuis str. O-antigen polymerase YP_217085.1 2189997 R 321314 CDS YP_217086.1 62180669 complement(2191461..2192483) 1 NC_006905.1 together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP-glucose-1-phosphate uridylyltransferase 2192483 galF 321314002401 galF Salmonella enterica subsp. enterica serovar Choleraesuis str. UTP-glucose-1-phosphate uridylyltransferase YP_217086.1 2191461 R 321314 CDS YP_217087.1 62180670 complement(2192532..2193935) 1 NC_006905.1 WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein 2193935 wcaM 321314002402 wcaM Salmonella enterica subsp. enterica serovar Choleraesuis str. colanic acid biosynthesis protein YP_217087.1 2192532 R 321314 CDS YP_217088.1 62180671 complement(2193946..2195166) 1 NC_006905.1 glycosyl transferase family protein 2195166 wcaL 321314002403 wcaL Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl transferase family protein YP_217088.1 2193946 R 321314 CDS YP_217089.1 62180672 complement(2195163..2196443) 1 NC_006905.1 pyruvyl transferase 2196443 wcaK 321314002404 wcaK Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvyl transferase YP_217089.1 2195163 R 321314 CDS YP_217090.1 62180673 complement(2196465..2197943) 1 NC_006905.1 colanic acid exporter 2197943 wzxC 321314002405 wzxC Salmonella enterica subsp. enterica serovar Choleraesuis str. colanic acid exporter YP_217090.1 2196465 R 321314 CDS YP_217091.1 62180674 complement(2198045..2199439) 1 NC_006905.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase 2199439 wcaJ 321314002406 wcaJ Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-glucose lipid carrier transferase YP_217091.1 2198045 R 321314 CDS YP_217092.1 62180675 complement(2199493..2200863) 1 NC_006905.1 IPR005841: Phosphoglucomutase/phosphomannomutase; phosphomannomutase 2200863 cpsG 321314002407 cpsG Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphomannomutase YP_217092.1 2199493 R 321314 CDS YP_217093.1 62180676 complement(2200974..2202416) 1 NC_006905.1 IPR001538: Mannose-6-phosphate isomerase, type II; IPR005835: Nucleotidyl transferase; IPR006375: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase;IPR007113: Cupin domain; mannose-1-phosphate guanylyltransferase 2202416 manC 321314002408 manC Salmonella enterica subsp. enterica serovar Choleraesuis str. mannose-1-phosphate guanylyltransferase YP_217093.1 2200974 R 321314 CDS YP_217094.1 62180677 complement(2202413..2203636) 1 NC_006905.1 glycosyl transferase family protein 2203636 wcaI 321314002409 wcaI Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl transferase family protein YP_217094.1 2202413 R 321314 CDS YP_217095.1 62180678 complement(2203633..2204106) 1 NC_006905.1 glycosyl transferase in colanic acid biosynthesis 2204106 wcaI 321314002410 wcaI Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl transferase in colanic acid biosynthesis YP_217095.1 2203633 R 321314 CDS YP_217096.1 62180679 complement(2204109..2205074) 1 NC_006905.1 bifunctional protein in colanic acid biosyntheis; GDP fucose synthetase 2205074 wcaG 321314002411 wcaG Salmonella enterica subsp. enterica serovar Choleraesuis str. GDP fucose synthetase YP_217096.1 2204109 R 321314 CDS YP_217097.1 62180680 complement(2205077..2206198) 1 NC_006905.1 IPR002198: Short-chain dehydrogenase/reductase SDR; GDP-D-mannose dehydratase 2206198 gmd 321314002412 gmd Salmonella enterica subsp. enterica serovar Choleraesuis str. GDP-D-mannose dehydratase YP_217097.1 2205077 R 321314 CDS YP_217098.1 62180681 complement(2206222..2206776) 1 NC_006905.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF 2206776 wcaF 321314002413 wcaF Salmonella enterica subsp. enterica serovar Choleraesuis str. colanic acid biosynthesis acetyltransferase WcaF YP_217098.1 2206222 R 321314 CDS YP_217099.1 62180682 complement(2206792..2207538) 1 NC_006905.1 IPR001173: Glycosyl transferase, family 2; glycosyl transferase family protein 2207538 wcaE 321314002414 wcaE Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl transferase family protein YP_217099.1 2206792 R 321314 CDS YP_217100.1 62180683 complement(2207551..2208765) 1 NC_006905.1 essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid biosynthesis protein 2208765 wcaD 321314002415 wcaD Salmonella enterica subsp. enterica serovar Choleraesuis str. colanic acid biosynthesis protein YP_217100.1 2207551 R 321314 CDS YP_217101.1 62180684 complement(2208740..2209957) 1 NC_006905.1 glycosyl transferase family protein 2209957 wcaC 321314002416 wcaC Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl transferase family protein YP_217101.1 2208740 R 321314 CDS YP_217102.1 62180685 complement(2209954..2210442) 1 NC_006905.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; colanic acid biosynthesis acetyltransferase WcaB 2210442 wcaB 321314002417 wcaB Salmonella enterica subsp. enterica serovar Choleraesuis str. colanic acid biosynthesis acetyltransferase WcaB YP_217102.1 2209954 R 321314 CDS YP_217103.1 62180686 complement(2210445..2211287) 1 NC_006905.1 IPR001173: Glycosyl transferase, family 2; glycosyl transferase family protein 2211287 wcaA 321314002418 wcaA Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl transferase family protein YP_217103.1 2210445 R 321314 CDS YP_217104.1 62180687 complement(2211374..2213533) 1 NC_006905.1 Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase 2213533 wzc 321314002419 wzc Salmonella enterica subsp. enterica serovar Choleraesuis str. tyrosine kinase YP_217104.1 2211374 R 321314 CDS YP_217105.1 62180688 complement(2213530..2213952) 1 NC_006905.1 Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; tyrosine phosphatase 2213952 wzb 321314002420 wzb Salmonella enterica subsp. enterica serovar Choleraesuis str. tyrosine phosphatase YP_217105.1 2213530 R 321314 CDS YP_217106.1 62180689 complement(2213985..2215124) 1 NC_006905.1 IPR003715: Polysaccharide export protein; polysaccharide export protein, outer membrane 2215124 wza 321314002421 wza Salmonella enterica subsp. enterica serovar Choleraesuis str. polysaccharide export protein, outer membrane YP_217106.1 2213985 R 321314 CDS YP_217107.1 62180690 2215198..2215443 1 NC_006905.1 hypothetical protein 2215443 321314002422 SC2120 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217107.1 2215198 D 321314 CDS YP_217108.1 62180691 2215799..2217379 1 NC_006905.1 IPR000644: CBS domain; inner membrane protein 2217379 yegH 321314002423 yegH Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217108.1 2215799 D 321314 CDS YP_217109.1 62180692 complement(2217465..2219321) 1 NC_006905.1 YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; assembly protein 2219321 asmA 321314002424 asmA Salmonella enterica subsp. enterica serovar Choleraesuis str. assembly protein YP_217109.1 2217465 R 321314 CDS YP_217110.1 62180693 complement(2219360..2219941) 1 NC_006905.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2219941 dcd 321314002425 dcd Salmonella enterica subsp. enterica serovar Choleraesuis str. deoxycytidine triphosphate deaminase YP_217110.1 2219360 R 321314 CDS YP_217111.1 62180694 complement(2220032..2220673) 1 NC_006905.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2220673 udk 321314002426 udk Salmonella enterica subsp. enterica serovar Choleraesuis str. uridine kinase YP_217111.1 2220032 R 321314 CDS YP_217112.1 62180695 complement(2220749..2220919) 1 NC_006905.1 hypothetical protein 2220919 321314002427 SC2125 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217112.1 2220749 R 321314 CDS YP_217113.1 62180696 2221004..2223994 1 NC_006905.1 IPR000014: PAS domain; IPR000160: GGDEF; IPR000700: PAS-associated, C-terminal;IPR001610: PAC motif;IPR001633: EAL domain;IPR007895: MASE1; PAS/PAC domain/diguanylate cyclase/phosphodiesterase domain-containing protein 2223994 yegE 321314002428 yegE Salmonella enterica subsp. enterica serovar Choleraesuis str. PAS/PAC domain/diguanylate cyclase/phosphodiesterase domain-containing protein YP_217113.1 2221004 D 321314 CDS YP_217114.1 62180697 complement(2223962..2224831) 1 NC_006905.1 inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; 3-methyladenine DNA glycosylase 2224831 alkA 321314002429 alkA Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-methyladenine DNA glycosylase YP_217114.1 2223962 R 321314 CDS YP_217115.1 62180698 2224965..2226317 1 NC_006905.1 IPR001023: Heat shock protein Hsp70; chaperone 2226317 yegD 321314002430 yegD Salmonella enterica subsp. enterica serovar Choleraesuis str. chaperone YP_217115.1 2224965 D 321314 CDS YP_217116.1 62180699 2226805..2227998 1 NC_006905.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA 2227998 yegM 321314002431 yegM Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug efflux system subunit MdtA YP_217116.1 2226805 D 321314 CDS YP_217117.1 62180700 2227998..2231120 1 NC_006905.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB 2231120 yegN 321314002432 yegN Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug efflux system subunit MdtB YP_217117.1 2227998 D 321314 CDS YP_217118.1 62180701 2231121..2234201 1 NC_006905.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC 2234201 yegO 321314002433 yegO Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug efflux system subunit MdtC YP_217118.1 2231121 D 321314 CDS YP_217119.1 62180702 2235607..2237010 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; signal transduction histidine-protein kinase BaeS 2237010 baeS 321314002435 baeS Salmonella enterica subsp. enterica serovar Choleraesuis str. signal transduction histidine-protein kinase BaeS YP_217119.1 2235607 D 321314 CDS YP_217120.1 62180703 2237007..2237729 1 NC_006905.1 response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR 2237729 baeR 321314002436 baeR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator BaeR YP_217120.1 2237007 D 321314 CDS YP_217121.1 62180704 2237998..2239200 1 NC_006905.1 hypothetical protein 2239200 321314002437 SC2134 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217121.1 2237998 D 321314 CDS YP_217122.1 62180705 2239200..2239916 1 NC_006905.1 inner membrane protein 2239916 321314002438 SC2135 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217122.1 2239200 D 321314 CDS YP_217123.1 62180706 2239927..2242038 1 NC_006905.1 inner membrane protein 2242038 321314002439 SC2136 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217123.1 2239927 D 321314 CDS YP_217124.1 62180707 2242043..2242762 1 NC_006905.1 hypothetical protein 2242762 321314002440 SC2137 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217124.1 2242043 D 321314 CDS YP_217125.1 62180708 complement(2242893..2243636) 1 NC_006905.1 hypothetical protein 2243636 321314002441 SC2138 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217125.1 2242893 R 321314 CDS YP_217126.1 62180709 complement(2243740..2243874) 1 NC_006905.1 hypothetical protein 2243874 insA 321314002442 insA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217126.1 2243740 R 321314 CDS YP_217127.1 62180710 complement(2244086..2244460) 1 NC_006905.1 hypothetical protein 2244460 321314002443 SC2140 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217127.1 2244086 R 321314 CDS YP_217128.1 62180711 complement(2244778..2245155) 1 NC_006905.1 hypothetical protein 2245155 321314002444 SC2141 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217128.1 2244778 R 321314 CDS YP_217129.1 62180712 complement(2245567..2245956) 1 NC_006905.1 hypothetical protein 2245956 yibG 321314002445 yibG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217129.1 2245567 R 321314 CDS YP_217130.1 62180713 2247252..2247494 1 NC_006905.1 hypothetical protein 2247494 321314002447 SC2143 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217130.1 2247252 D 321314 CDS YP_217131.1 62180714 complement(2247881..2248246) 1 NC_006905.1 hypothetical protein 2248246 yibG 321314002448 yibG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217131.1 2247881 R 321314 CDS YP_217132.1 62180715 complement(2248348..2249085) 1 NC_006905.1 IPR001826: RHS protein; hypothetical protein 2249085 yibJ 321314002449 yibJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217132.1 2248348 R 321314 CDS YP_217133.1 62180716 complement(2249113..2249646) 1 NC_006905.1 IPR006662: Thioredoxin type domain; hypothetical protein 2249646 321314002450 SC2146 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217133.1 2249113 R 321314 CDS YP_217134.1 62180717 complement(2250248..2250691) 1 NC_006905.1 hypothetical protein 2250691 321314002451 SC2147 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217134.1 2250248 R 321314 CDS YP_217135.1 62180718 complement(2251238..2251657) 1 NC_006905.1 hypothetical protein 2251657 321314002452 SC2148 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217135.1 2251238 R 321314 CDS YP_217136.1 62180719 complement(2252091..2252255) 1 NC_006905.1 hypothetical protein 2252255 321314002453 SC2149 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217136.1 2252091 R 321314 CDS YP_217137.1 62180720 complement(2252313..2252930) 1 NC_006905.1 hypothetical protein 2252930 321314002454 SC2150 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217137.1 2252313 R 321314 CDS YP_217138.1 62180721 2253094..2254455 1 NC_006905.1 IPR001539: Peptidase U32; protease 2254455 yegQ 321314002455 yegQ Salmonella enterica subsp. enterica serovar Choleraesuis str. protease YP_217138.1 2253094 D 321314 CDS YP_217139.1 62180722 complement(2255096..2255512) 1 NC_006905.1 hypothetical protein 2255512 cesT 321314002456 cesT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217139.1 2255096 R 321314 CDS YP_217140.1 62180723 complement(2255634..2255969) 1 NC_006905.1 inner membrane protein 2255969 321314002457 SC2153 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217140.1 2255634 R 321314 CDS YP_217141.1 62180724 complement(2256331..2256447) 1 NC_006905.1 hypothetical protein 2256447 321314002458 SC2154 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217141.1 2256331 R 321314 CDS YP_217142.1 62180725 2256531..2257430 1 NC_006905.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2257430 yegS 321314002459 yegS Salmonella enterica subsp. enterica serovar Choleraesuis str. lipid kinase YP_217142.1 2256531 D 321314 CDS YP_217143.1 62180726 complement(2257483..2258535) 1 NC_006905.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 2258535 fbaB 321314002460 fbaB Salmonella enterica subsp. enterica serovar Choleraesuis str. fructose-bisphosphate aldolase YP_217143.1 2257483 R 321314 CDS YP_217144.1 62180727 2258789..2260060 1 NC_006905.1 IPR007114: Major facilitator superfamily; MFS family transporter 2260060 yegT 321314002461 yegT Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter YP_217144.1 2258789 D 321314 CDS YP_217145.1 62180728 2260057..2261061 1 NC_006905.1 IPR005502: ADP-ribosylglycohydrolase; glycohydrolase 2261061 yegU 321314002462 yegU Salmonella enterica subsp. enterica serovar Choleraesuis str. glycohydrolase YP_217145.1 2260057 D 321314 CDS YP_217146.1 62180729 2261058..2262023 1 NC_006905.1 IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; sugar kinase 2262023 yegV 321314002463 yegV Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar kinase YP_217146.1 2261058 D 321314 CDS YP_217147.1 62180730 complement(2261997..2262743) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 2262743 yegW 321314002464 yegW Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_217147.1 2261997 R 321314 CDS YP_217148.1 62180731 complement(2262779..2263579) 1 NC_006905.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 2263579 thiD 321314002465 thiD Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphomethylpyrimidine kinase YP_217148.1 2262779 R 321314 CDS YP_217149.1 62180732 complement(2263566..2264363) 1 NC_006905.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2264363 thiM 321314002466 thiM Salmonella enterica subsp. enterica serovar Choleraesuis str. hydroxyethylthiazole kinase YP_217149.1 2263566 R 321314 CDS YP_217150.1 62180733 2264773..2265087 1 NC_006905.1 hypothetical protein 2265087 yohN 321314002467 yohN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217150.1 2264773 D 321314 CDS YP_217151.1 62180734 complement(2265349..2266356) 1 NC_006905.1 hypothetical protein 2266356 stcD 321314002468 stcD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217151.1 2265349 R 321314 CDS YP_217152.1 62180735 complement(2266372..2268861) 1 NC_006905.1 IPR000015: Fimbrial biogenesis outer membrane usher protein; outer membrane protein 2268861 stcC 321314002469 stcC Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_217152.1 2266372 R 321314 CDS YP_217153.1 62180736 complement(2268875..2269627) 1 NC_006905.1 IPR001829: Bacterial pili assembly chaperone; periplasmic chaperone protein 2269627 stcB 321314002470 stcB Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic chaperone protein YP_217153.1 2268875 R 321314 CDS YP_217154.1 62180737 complement(2269614..2270144) 1 NC_006905.1 IPR000504: RNA-binding region RNP-1 (RNA recognition motif); fimbrial-like protein 2270144 stcA 321314002471 stcA Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial-like protein YP_217154.1 2269614 R 321314 CDS YP_217155.1 62180738 complement(2270423..2270704) 1 NC_006905.1 hypothetical protein 2270704 yehE 321314002472 yehE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217155.1 2270423 R 321314 CDS YP_217156.1 62180739 complement(2270982..2272091) 1 NC_006905.1 IPR000808: Mrp family; ATPase 2272091 mrp 321314002473 mrp Salmonella enterica subsp. enterica serovar Choleraesuis str. ATPase YP_217156.1 2270982 R 321314 CDS YP_217157.2 162139570 2272256..2274289 1 NC_006905.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2274289 metG 321314002474 metG Salmonella enterica subsp. enterica serovar Choleraesuis str. methionyl-tRNA synthetase YP_217157.2 2272256 D 321314 CDS YP_217158.1 62180741 2274530..2274988 1 NC_006905.1 lipoprotein 2274988 yehR 321314002475 yehR Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein YP_217158.1 2274530 D 321314 CDS YP_217159.1 62180742 2275458..2275688 1 NC_006905.1 hypothetical protein 2275688 321314002476 SC2172 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217159.1 2275458 D 321314 CDS YP_217160.1 62180743 complement(2275745..2276269) 1 NC_006905.1 hypothetical protein 2276269 yehS 321314002477 yehS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217160.1 2275745 R 321314 CDS YP_217161.1 62180744 complement(2276259..2276978) 1 NC_006905.1 unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT 2276978 yehT 321314002478 yehT Salmonella enterica subsp. enterica serovar Choleraesuis str. two-component response-regulatory protein YehT YP_217161.1 2276259 R 321314 CDS YP_217162.1 62180745 complement(2276975..2278615) 1 NC_006905.1 sensor/kinase in regulatory system 2278615 yehU 321314002479 yehU Salmonella enterica subsp. enterica serovar Choleraesuis str. sensor/kinase in regulatory system YP_217162.1 2276975 R 321314 CDS YP_217163.1 62180746 2278883..2279614 1 NC_006905.1 IPR000551: Bacterial regulatory protein, MerR family; MerR family transcriptional regulator 2279614 yehV 321314002480 yehV Salmonella enterica subsp. enterica serovar Choleraesuis str. MerR family transcriptional regulator YP_217163.1 2278883 D 321314 CDS YP_217164.1 62180747 2279674..2279781 1 NC_006905.1 hypothetical protein 2279781 321314002481 SC2177 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217164.1 2279674 D 321314 CDS YP_217165.1 62180748 complement(2279762..2280493) 1 NC_006905.1 ABC-type proline/glycine betaine transport systems, permease component 2280493 yehW 321314002482 yehW Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC-type proline/glycine betaine transport systems, permease component YP_217165.1 2279762 R 321314 CDS YP_217166.1 62180749 complement(2280477..2281424) 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; proline/glycine betaine ABC transporter ATPase 2281424 yehX 321314002483 yehX Salmonella enterica subsp. enterica serovar Choleraesuis str. proline/glycine betaine ABC transporter ATPase YP_217166.1 2280477 R 321314 CDS YP_217167.1 62180750 complement(2281417..2282586) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; ABC-type proline/glycine betaine transport systems, permease component 2282586 yehY 321314002484 yehY Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC-type proline/glycine betaine transport systems, permease component YP_217167.1 2281417 R 321314 CDS YP_217168.1 62180751 complement(2282590..2283507) 1 NC_006905.1 ABC transporter substrate-binding protein 2283507 yehZ 321314002485 yehZ Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter substrate-binding protein YP_217168.1 2282590 R 321314 CDS YP_217169.1 62180752 complement(2283688..2285985) 1 NC_006905.1 IPR001764: Glycoside hydrolase, family 3, N-terminal; IPR002772: Glycoside hydrolase, family 3, C-terminal; beta-D-glucoside glucohydrolase, periplasmic 2285985 bglX 321314002486 bglX Salmonella enterica subsp. enterica serovar Choleraesuis str. beta-D-glucoside glucohydrolase, periplasmic YP_217169.1 2283688 R 321314 CDS YP_217170.1 62180753 2286252..2287982 1 NC_006905.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2287982 dld 321314002487 dld Salmonella enterica subsp. enterica serovar Choleraesuis str. D-lactate dehydrogenase YP_217170.1 2286252 D 321314 CDS YP_217171.1 62180754 complement(2288040..2288987) 1 NC_006905.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2288987 pbpG 321314002488 pbpG Salmonella enterica subsp. enterica serovar Choleraesuis str. D-alanyl-D-alanine endopeptidase YP_217171.1 2288040 R 321314 CDS YP_217172.1 62180755 complement(2289153..2289692) 1 NC_006905.1 hypothetical protein 2289692 yohC 321314002489 yohC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217172.1 2289153 R 321314 CDS YP_217173.1 62180756 2289899..2290468 1 NC_006905.1 DedA family membrane protein 2290468 yohD 321314002490 yohD Salmonella enterica subsp. enterica serovar Choleraesuis str. DedA family membrane protein YP_217173.1 2289899 D 321314 CDS YP_217174.1 62180757 complement(2290516..2291277) 1 NC_006905.1 IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; acetoin dehydrogenase 2291277 yohF 321314002491 yohF Salmonella enterica subsp. enterica serovar Choleraesuis str. acetoin dehydrogenase YP_217174.1 2290516 R 321314 CDS YP_217175.1 62180758 complement(2291343..2292779) 1 NC_006905.1 may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ 2292779 yohG 321314002492 yohG Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug resistance outer membrane protein MdtQ YP_217175.1 2291343 R 321314 CDS YP_217176.1 62180759 complement(2292830..2292988) 1 NC_006905.1 hypothetical protein 2292988 321314002493 SC2189 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217176.1 2292830 R 321314 CDS YP_217177.1 62180760 2292970..2293167 1 NC_006905.1 hypothetical protein 2293167 321314002494 SC2190 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217177.1 2292970 D 321314 CDS YP_217178.1 62180761 complement(2293238..2294176) 1 NC_006905.1 IPR001269: Protein of unknown function UPF0034; IPR003009: FMN/related compound-binding core; tRNA-dihydrouridine synthase C 2294176 yohI 321314002495 yohI Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA-dihydrouridine synthase C YP_217178.1 2293238 R 321314 CDS YP_217179.1 62180762 complement(2294285..2295478) 1 NC_006905.1 catalyzes the formation of catechol from salicylate; salicylate hydroxylase 2295478 nhg 321314002496 nhg Salmonella enterica subsp. enterica serovar Choleraesuis str. salicylate hydroxylase YP_217179.1 2294285 R 321314 CDS YP_217180.1 62180763 complement(2295493..2296137) 1 NC_006905.1 IPR004045: Glutathione S-transferase, N-terminal; glutathione S-transferase 2296137 maaI 321314002497 maaI Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione S-transferase YP_217180.1 2295493 R 321314 CDS YP_217181.1 62180764 complement(2296146..2296847) 1 NC_006905.1 flutathione S-transferase 2296847 fst 321314002498 fst Salmonella enterica subsp. enterica serovar Choleraesuis str. flutathione S-transferase YP_217181.1 2296146 R 321314 CDS YP_217182.1 62180765 complement(2296863..2297900) 1 NC_006905.1 IPR007113: Cupin domain; 1,2-dioxygenase 2297900 gdo 321314002499 gdo Salmonella enterica subsp. enterica serovar Choleraesuis str. 1,2-dioxygenase YP_217182.1 2296863 R 321314 CDS YP_217183.1 62180766 complement(2297912..2299270) 1 NC_006905.1 IPR007114: Major facilitator superfamily; sugar transporter 2299270 pcaK 321314002500 pcaK Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar transporter YP_217183.1 2297912 R 321314 CDS YP_217184.1 62180767 2299396..2300304 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 2300304 gbpR 321314002501 gbpR Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_217184.1 2299396 D 321314 CDS YP_217185.1 62180768 2300400..2300834 1 NC_006905.1 IPR005538: LrgA family; hypothetical protein 2300834 yohJ 321314002502 yohJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217185.1 2300400 D 321314 CDS YP_217186.1 62180769 2300831..2301526 1 NC_006905.1 hypothetical protein 2301526 yohK 321314002503 yohK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217186.1 2300831 D 321314 CDS YP_217187.1 62180770 2301680..2302564 1 NC_006905.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2302564 cdd 321314002504 cdd Salmonella enterica subsp. enterica serovar Choleraesuis str. cytidine deaminase YP_217187.1 2301680 D 321314 CDS YP_217188.1 62180771 2302678..2303460 1 NC_006905.1 hypothetical protein 2303460 sanA 321314002505 sanA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217188.1 2302678 D 321314 CDS YP_217189.1 62180772 2303463..2303702 1 NC_006905.1 hypothetical protein 2303702 yeiS 321314002506 yeiS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217189.1 2303463 D 321314 CDS YP_217190.1 62180773 2303907..2305148 1 NC_006905.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2305148 yeiT 321314002507 yeiT Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_217190.1 2303907 D 321314 CDS YP_217191.1 62180774 2305142..2306377 1 NC_006905.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2306377 yeiA 321314002508 yeiA Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydropyrimidine dehydrogenase YP_217191.1 2305142 D 321314 CDS YP_217192.1 62180775 complement(2306452..2307462) 1 NC_006905.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein 2307462 mglC 321314002509 mglC Salmonella enterica subsp. enterica serovar Choleraesuis str. beta-methylgalactoside transporter inner membrane protein YP_217192.1 2306452 R 321314 CDS YP_217193.1 62180776 complement(2309131..2310129) 1 NC_006905.1 galactose ABC transporter permease 2310129 mglB 321314002511 mglB Salmonella enterica subsp. enterica serovar Choleraesuis str. galactose ABC transporter permease YP_217193.1 2309131 R 321314 CDS YP_217194.1 62180777 complement(2310628..2311650) 1 NC_006905.1 negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS 2311650 galS 321314002512 galS Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator GalS YP_217194.1 2310628 R 321314 CDS YP_217195.1 62180778 complement(2311800..2312942) 1 NC_006905.1 hypothetical protein 2312942 yeiB 321314002513 yeiB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217195.1 2311800 R 321314 CDS YP_217196.1 62180779 complement(2312957..2313625) 1 NC_006905.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2313625 folE 321314002514 folE Salmonella enterica subsp. enterica serovar Choleraesuis str. GTP cyclohydrolase I YP_217196.1 2312957 R 321314 CDS YP_217197.1 62180780 complement(2313680..2313808) 1 NC_006905.1 hypothetical protein 2313808 321314002515 SC2210 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217197.1 2313680 R 321314 CDS YP_217198.1 62180781 complement(2314803..2315192) 1 NC_006905.1 IPR001387: Helix-turn-helix motif; transcriptional regulator 2315192 321314002517 SC2211 Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_217198.1 2314803 R 321314 CDS YP_217199.1 62180782 complement(2315197..2316564) 1 NC_006905.1 IPR004644: Iron-sulfur-dependent L-serine dehydratase single chain form; IPR005130: Serine dehydratase alpha chain; IPR005131: Serine dehydratase beta chain; D-serine dehydratase 2316564 sdhL 321314002518 sdhL Salmonella enterica subsp. enterica serovar Choleraesuis str. D-serine dehydratase YP_217199.1 2315197 R 321314 CDS YP_217200.1 62180783 2316781..2317668 1 NC_006905.1 phosphoserine phosphatase 2317668 serB 321314002519 serB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoserine phosphatase YP_217200.1 2316781 D 321314 CDS YP_217201.1 62180784 2317701..2319023 1 NC_006905.1 IPR007114: Major facilitator superfamily; regulatory protein 2319023 uhpC 321314002520 uhpC Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein YP_217201.1 2317701 D 321314 CDS YP_217202.1 62180785 complement(2319067..2321058) 1 NC_006905.1 Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; colicin I receptor 2321058 cirA 321314002521 cirA Salmonella enterica subsp. enterica serovar Choleraesuis str. colicin I receptor YP_217202.1 2319067 R 321314 CDS YP_217203.1 62180786 complement(2321403..2322872) 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; IPR004840: Amino acid permease; IPR004841: Amino acid permease-associated region; lysine transporter 2322872 lysP 321314002522 lysP Salmonella enterica subsp. enterica serovar Choleraesuis str. lysine transporter YP_217203.1 2321403 R 321314 CDS YP_217204.1 62180787 complement(2323062..2323925) 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; DNA-binding transcriptional regulator 2323925 yeiE 321314002523 yeiE Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator YP_217204.1 2323062 R 321314 CDS YP_217205.1 62180788 2324046..2325095 1 NC_006905.1 hypothetical protein 2325095 yeiH 321314002524 yeiH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217205.1 2324046 D 321314 CDS YP_217206.1 62180789 2325174..2326031 1 NC_006905.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2326031 nfo 321314002525 nfo Salmonella enterica subsp. enterica serovar Choleraesuis str. endonuclease IV YP_217206.1 2325174 D 321314 CDS YP_217207.1 62180790 complement(2326096..2327784) 1 NC_006905.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC 2327784 fruA 321314002526 fruA Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system fructose-specific transporter subunit IIBC YP_217207.1 2326096 R 321314 CDS YP_217208.1 62180791 complement(2327801..2328739) 1 NC_006905.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase 2328739 fruK 321314002527 fruK Salmonella enterica subsp. enterica serovar Choleraesuis str. 1-phosphofructokinase YP_217208.1 2327801 R 321314 CDS YP_217209.1 62180792 complement(2328739..2329869) 1 NC_006905.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 2329869 fruF 321314002528 fruF Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein YP_217209.1 2328739 R 321314 CDS YP_217210.1 62180793 2330238..2331419 1 NC_006905.1 IPR007114: Major facilitator superfamily; proton efflux pump 2331419 setB 321314002529 setB Salmonella enterica subsp. enterica serovar Choleraesuis str. proton efflux pump YP_217210.1 2330238 D 321314 CDS YP_217211.1 62180794 complement(2331705..2332913) 1 NC_006905.1 transposase of Tn10 2332913 tnpR 321314002530 tnpR Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase of Tn10 YP_217211.1 2331705 R 321314 CDS YP_217212.1 62180795 complement(2333017..2333487) 1 NC_006905.1 hypothetical protein 2333487 321314002531 SC2225 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217212.1 2333017 R 321314 CDS YP_217213.1 62180796 complement(2333489..2333611) 1 NC_006905.1 inner membrane protein 2333611 321314002532 SC2226 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217213.1 2333489 R 321314 CDS YP_217214.1 62180797 2334577..2335149 1 NC_006905.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2335149 yeiP 321314002533 yeiP Salmonella enterica subsp. enterica serovar Choleraesuis str. elongation factor P YP_217214.1 2334577 D 321314 CDS YP_217215.1 62180798 2335361..2336347 1 NC_006905.1 hypothetical protein 2336347 yeiR 321314002534 yeiR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217215.1 2335361 D 321314 CDS YP_217216.1 62180799 2336350..2337015 1 NC_006905.1 IPR000326: PA-phosphatase related phosphoesterase; hypothetical protein 2337015 yeiU 321314002535 yeiU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217216.1 2336350 D 321314 CDS YP_217217.1 62180800 2337509..2338081 1 NC_006905.1 by similarity, Spr seems to have peptidase activity; involved in thermoresistance; outer membrane lipoprotein 2338081 spr 321314002536 spr Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_217217.1 2337509 D 321314 CDS YP_217218.1 62180801 2338406..2339962 1 NC_006905.1 IPR001633: EAL domain; hypothetical protein 2339962 rtn 321314002537 rtn Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217218.1 2338406 D 321314 CDS YP_217219.1 62180802 2340069..2341874 1 NC_006905.1 IPR000914: Bacterial extracellular solute-binding protein, family 5; ABC transporter substrate-binding protein 2341874 yejA 321314002538 yejA Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter substrate-binding protein YP_217219.1 2340069 D 321314 CDS YP_217220.1 62180803 2341884..2342978 1 NC_006905.1 dipeptide/oligopeptide/nickel ABC transporter permease 2342978 yejB 321314002539 yejB Salmonella enterica subsp. enterica serovar Choleraesuis str. dipeptide/oligopeptide/nickel ABC transporter permease YP_217220.1 2341884 D 321314 CDS YP_217221.1 62180804 2342978..2344003 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; dipeptide/oligopeptide/nickel ABC transporter permease 2344003 yejE 321314002540 yejE Salmonella enterica subsp. enterica serovar Choleraesuis str. dipeptide/oligopeptide/nickel ABC transporter permease YP_217221.1 2342978 D 321314 CDS YP_217222.1 62180805 2344005..2345594 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter ATPase 2345594 yejF 321314002541 yejF Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATPase YP_217222.1 2344005 D 321314 CDS YP_217223.1 62180806 complement(2345598..2345942) 1 NC_006905.1 hypothetical protein 2345942 yejG 321314002542 yejG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217223.1 2345598 R 321314 CDS YP_217224.1 62180807 complement(2346238..2346336) 1 NC_006905.1 hypothetical protein 2346336 321314002543 SC2237 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217224.1 2346238 R 321314 CDS YP_217225.1 62180808 complement(2346333..2347523) 1 NC_006905.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein 2347523 bcr 321314002544 bcr Salmonella enterica subsp. enterica serovar Choleraesuis str. bicyclomycin/multidrug efflux system protein YP_217225.1 2346333 R 321314 CDS YP_217226.1 62180809 complement(2347551..2348246) 1 NC_006905.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A 2348246 rsuA 321314002545 rsuA Salmonella enterica subsp. enterica serovar Choleraesuis str. 16S rRNA pseudouridylate synthase A YP_217226.1 2347551 R 321314 CDS YP_217227.1 62180810 2348398..2350158 1 NC_006905.1 IPR001410: DEAD/DEAH box helicase; IPR001650: Helicase, C-terminal; ATP-dependent helicase 2350158 yejH 321314002546 yejH Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent helicase YP_217227.1 2348398 D 321314 CDS YP_217228.1 62180811 2350283..2350567 1 NC_006905.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2350567 rplY 321314002547 rplY Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L25 YP_217228.1 2350283 D 321314 CDS YP_217229.1 62180812 complement(2350676..2351296) 1 NC_006905.1 inner membrane protein 2351296 321314002548 SC2242 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217229.1 2350676 R 321314 CDS YP_217230.1 62180813 complement(2351324..2352331) 1 NC_006905.1 nucleoid-associated protein NdpA 2352331 yejK 321314002549 yejK Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleoid-associated protein NdpA YP_217230.1 2351324 R 321314 CDS YP_217231.1 62180814 2352511..2352738 1 NC_006905.1 hypothetical protein 2352738 yejL 321314002550 yejL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217231.1 2352511 D 321314 CDS YP_217232.1 62180815 2352770..2354530 1 NC_006905.1 IPR000531: TonB-dependent receptor protein; alkaline phosphatase 2354530 yejM 321314002551 yejM Salmonella enterica subsp. enterica serovar Choleraesuis str. alkaline phosphatase YP_217232.1 2352770 D 321314 CDS YP_217233.1 62180816 complement(2357759..2358163) 1 NC_006905.1 bacteriophage tail fiber assembly protein 2358163 tfa 321314002554 tfa Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage tail fiber assembly protein YP_217233.1 2357759 R 321314 CDS YP_217234.1 62180817 complement(2358204..2358995) 1 NC_006905.1 tail fiber protein of phage 2358995 vtf 321314002555 vtf Salmonella enterica subsp. enterica serovar Choleraesuis str. tail fiber protein of phage YP_217234.1 2358204 R 321314 CDS YP_217235.1 62180818 2359087..2359269 1 NC_006905.1 hypothetical protein 2359269 321314002556 SC2248 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217235.1 2359087 D 321314 CDS YP_217236.1 62180819 2359241..2359501 1 NC_006905.1 virulence protein MsgA-like protein 2359501 msgA 321314002557 msgA Salmonella enterica subsp. enterica serovar Choleraesuis str. virulence protein MsgA-like protein YP_217236.1 2359241 D 321314 CDS YP_217237.1 62180820 complement(2359693..2360250) 1 NC_006905.1 outer membrane protein 2360250 321314002558 SC2250 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_217237.1 2359693 R 321314 CDS YP_217238.1 62180821 2360986..2361633 1 NC_006905.1 nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2361633 narP 321314002559 narP Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator NarP YP_217238.1 2360986 D 321314 CDS YP_217239.1 62180822 complement(2361677..2362720) 1 NC_006905.1 IPR001440: TPR repeat; IPR005616: Cytochrome C biogenesis protein; heme lyase subunit, cytochrome c-type biogenesis 2362720 ccmH 321314002560 ccmH Salmonella enterica subsp. enterica serovar Choleraesuis str. heme lyase subunit, cytochrome c-type biogenesis YP_217239.1 2361677 R 321314 CDS YP_217240.1 62180823 complement(2362717..2363274) 1 NC_006905.1 IPR004799: Periplasmic protein thiol:disulfide oxidoreductase DsbE; IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; heme lyase disulfide oxidoreductase, cytocyhrome c-type biogenesis 2363274 ccmG 321314002561 ccmG Salmonella enterica subsp. enterica serovar Choleraesuis str. heme lyase disulfide oxidoreductase, cytocyhrome c-type biogenesis YP_217240.1 2362717 R 321314 CDS YP_217241.1 62180824 complement(2363271..2365202) 1 NC_006905.1 IPR003567: Cytochrome c-type biogenesis protein; IPR003568: Cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein 2365202 ccmF 321314002562 ccmF Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome c-type biogenesis protein YP_217241.1 2363271 R 321314 CDS YP_217242.1 62180825 complement(2365199..2365678) 1 NC_006905.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 2365678 ccmE 321314002563 ccmE Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome c-type biogenesis protein CcmE YP_217242.1 2365199 R 321314 CDS YP_217243.1 62180826 complement(2365675..2365887) 1 NC_006905.1 heme exporter protein C, cytochrome c-type biogenesis protein 2365887 ccmD 321314002564 ccmD Salmonella enterica subsp. enterica serovar Choleraesuis str. heme exporter protein C, cytochrome c-type biogenesis protein YP_217243.1 2365675 R 321314 CDS YP_217244.1 62180827 complement(2365884..2366630) 1 NC_006905.1 IPR002541: Cytochrome c assembly protein; IPR003557: Cytochrome c-type biogenesis protein CcmC; heme ABC exporter 2366630 ccmC 321314002565 ccmC Salmonella enterica subsp. enterica serovar Choleraesuis str. heme ABC exporter YP_217244.1 2365884 R 321314 CDS YP_217245.1 62180828 complement(2366673..2367332) 1 NC_006905.1 IPR003544: Cytochrome c-type biogenesis protein CcmB; heme ABC exporter 2367332 ccmB 321314002566 ccmB Salmonella enterica subsp. enterica serovar Choleraesuis str. heme ABC exporter YP_217245.1 2366673 R 321314 CDS YP_217246.1 62180829 complement(2367329..2367946) 1 NC_006905.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2367946 ccmA 321314002567 ccmA Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome c biogenesis protein CcmA YP_217246.1 2367329 R 321314 CDS YP_217247.1 62180830 complement(2367967..2368569) 1 NC_006905.1 with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC 2368569 napC 321314002568 napC Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome c-type protein NapC YP_217247.1 2367967 R 321314 CDS YP_217248.1 62180831 complement(2368579..2369028) 1 NC_006905.1 small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit 2369028 napB 321314002569 napB Salmonella enterica subsp. enterica serovar Choleraesuis str. citrate reductase cytochrome c-type subunit YP_217248.1 2368579 R 321314 CDS YP_217249.1 62180832 complement(2369144..2370013) 1 NC_006905.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 2370013 napH 321314002570 napH Salmonella enterica subsp. enterica serovar Choleraesuis str. quinol dehydrogenase membrane component YP_217249.1 2369144 R 321314 CDS YP_217250.1 62180833 complement(2370000..2370695) 1 NC_006905.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 2370695 napG 321314002571 napG Salmonella enterica subsp. enterica serovar Choleraesuis str. quinol dehydrogenase periplasmic component YP_217250.1 2370000 R 321314 CDS YP_217251.1 62180834 complement(2370702..2373188) 1 NC_006905.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2373188 napA 321314002572 napA Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrate reductase catalytic subunit YP_217251.1 2370702 R 321314 CDS YP_217252.1 62180835 complement(2373185..2373715) 1 NC_006905.1 periplasmic nitrate reductase 2373715 napD 321314002573 napD Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic nitrate reductase YP_217252.1 2373185 R 321314 CDS YP_217253.1 62180836 2374349..2374837 1 NC_006905.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2374837 eco 321314002574 eco Salmonella enterica subsp. enterica serovar Choleraesuis str. ecotin YP_217253.1 2374349 D 321314 CDS YP_217254.1 62180837 complement(2375046..2376689) 1 NC_006905.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component 2376689 yojI 321314002575 yojI Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug transporter membrane protein/ATP-binding component YP_217254.1 2375046 R 321314 CDS YP_217255.1 62180838 complement(2376765..2377415) 1 NC_006905.1 DNA repair system specific for alkylated DNA 2377415 alkB 321314002576 alkB Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA repair system specific for alkylated DNA YP_217255.1 2376765 R 321314 CDS YP_217256.1 62180839 complement(2377418..2378479) 1 NC_006905.1 bifunctional; IPR000005: Helix-turn-helix, AraC type; IPR001497: Methylated-DNA-[protein]-cysteine S-methyltransferase;protein,; IPR004026: Metal binding domain of Ada;IPR008332: Methylguanine DNA methyltransferase, ribonuclease-like;protein; O6-methylguanine-DNA methyltransferase/transcription activator/repressor 2378479 ada 321314002577 ada Salmonella enterica subsp. enterica serovar Choleraesuis str. O6-methylguanine-DNA methyltransferase/transcription activator/repressor YP_217256.1 2377418 R 321314 CDS YP_217257.1 62180840 complement(2378560..2379612) 1 NC_006905.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE 2379612 apbE 321314002578 apbE Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine biosynthesis lipoprotein ApbE YP_217257.1 2378560 R 321314 CDS YP_217258.1 62180841 complement(2379727..2380863) 1 NC_006905.1 allows for ions and hydrophilic solutes to cross the outer membrane; porin 2380863 ompC 321314002579 ompC Salmonella enterica subsp. enterica serovar Choleraesuis str. porin YP_217258.1 2379727 R 321314 CDS YP_217259.1 62180842 2381592..2384261 1 NC_006905.1 IPR005467: Histidine kinase; IPR008207: Hpt; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2384261 yojN 321314002580 yojN Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransfer intermediate protein in two-component regulatory system with RcsBC YP_217259.1 2381592 D 321314 CDS YP_217260.1 62180843 2384233..2384928 1 NC_006905.1 two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2384928 rcsB 321314002581 rcsB Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator RcsB YP_217260.1 2384233 D 321314 CDS YP_217261.1 62180844 complement(2385030..2387876) 1 NC_006905.1 IPR001789: Response regulator receiver; IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 2387876 321314002582 SC2274 Salmonella enterica subsp. enterica serovar Choleraesuis str. hybrid sensory kinase in two-component regulatory system with RcsB and YojN YP_217261.1 2385030 R 321314 CDS YP_217262.1 62180845 complement(2387994..2390630) 1 NC_006905.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2390630 gyrA 321314002583 gyrA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA gyrase subunit A YP_217262.1 2387994 R 321314 CDS YP_217263.1 62180846 complement(2391040..2392242) 1 NC_006905.1 dehydratase 2392242 dgoA 321314002584 dgoA Salmonella enterica subsp. enterica serovar Choleraesuis str. dehydratase YP_217263.1 2391040 R 321314 CDS YP_217264.1 62180847 complement(2392257..2393204) 1 NC_006905.1 IPR007114: Major facilitator superfamily; permease 2393204 tub 321314002585 tub Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_217264.1 2392257 R 321314 CDS YP_217265.1 62180848 2393820..2394515 1 NC_006905.1 GntR family transcriptional regulator 2394515 ntrA 321314002586 ntrA Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_217265.1 2393820 D 321314 CDS YP_217266.1 62180849 2394547..2395326 1 NC_006905.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2395326 ubiG 321314002587 ubiG Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-demethylubiquinone-9 3-methyltransferase YP_217266.1 2394547 D 321314 CDS YP_217267.1 62180850 2395682..2397967 1 NC_006905.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2397967 nrdA 321314002588 nrdA Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonucleotide-diphosphate reductase subunit alpha YP_217267.1 2395682 D 321314 CDS YP_217268.1 62180851 2398080..2399210 1 NC_006905.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2399210 nrdB 321314002589 nrdB Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonucleotide-diphosphate reductase subunit beta YP_217268.1 2398080 D 321314 CDS YP_217269.1 62180852 2399210..2399464 1 NC_006905.1 plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin 2399464 yfaE 321314002590 yfaE Salmonella enterica subsp. enterica serovar Choleraesuis str. 2Fe-2S ferredoxin YP_217269.1 2399210 D 321314 CDS YP_217270.1 62180853 complement(2399466..2400752) 1 NC_006905.1 IPR007114: Major facilitator superfamily; permease 2400752 321314002591 SC2283 Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_217270.1 2399466 R 321314 CDS YP_217271.1 62180854 2400818..2401696 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; LysR family transcriptional regulator 2401696 yvbU 321314002592 yvbU Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_217271.1 2400818 D 321314 CDS YP_217272.1 62180855 complement(2401812..2402882) 1 NC_006905.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 2402882 glpQ 321314002593 glpQ Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerophosphodiester phosphodiesterase YP_217272.1 2401812 R 321314 CDS YP_217273.1 62180856 complement(2402887..2404245) 1 NC_006905.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 2404245 glpT 321314002594 glpT Salmonella enterica subsp. enterica serovar Choleraesuis str. sn-glycerol-3-phosphate transporter YP_217273.1 2402887 R 321314 CDS YP_217274.1 62180857 2404517..2406145 1 NC_006905.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 2406145 glpA 321314002595 glpA Salmonella enterica subsp. enterica serovar Choleraesuis str. sn-glycerol-3-phosphate dehydrogenase subunit A YP_217274.1 2404517 D 321314 CDS YP_217275.1 62180858 2406135..2407394 1 NC_006905.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2407394 glpB 321314002596 glpB Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_217275.1 2406135 D 321314 CDS YP_217276.1 62180859 2407391..2408581 1 NC_006905.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2408581 glpC 321314002597 glpC Salmonella enterica subsp. enterica serovar Choleraesuis str. sn-glycerol-3-phosphate dehydrogenase subunit C YP_217276.1 2407391 D 321314 CDS YP_217277.1 62180860 2409007..2410029 1 NC_006905.1 similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; deubiquitinase 2410029 elaD 321314002598 elaD Salmonella enterica subsp. enterica serovar Choleraesuis str. deubiquitinase YP_217277.1 2409007 D 321314 CDS YP_217278.1 62180861 complement(2410139..2410324) 1 NC_006905.1 hypothetical protein 2410324 cinA 321314002599 cinA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217278.1 2410139 R 321314 CDS YP_217279.1 62180862 complement(2410321..2411124) 1 NC_006905.1 IPR005000: HpcH/HpaI aldolase; aldolase 2411124 yfaU 321314002600 yfaU Salmonella enterica subsp. enterica serovar Choleraesuis str. aldolase YP_217279.1 2410321 R 321314 CDS YP_217280.1 62180863 complement(2411150..2412439) 1 NC_006905.1 IPR007114: Major facilitator superfamily; MFS family transporter 2412439 yfaV 321314002601 yfaV Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter YP_217280.1 2411150 R 321314 CDS YP_217281.1 62180864 complement(2412495..2413700) 1 NC_006905.1 IPR001354: Mandelate racemase/muconate lactonizing enzyme; galactonate dehydratase 2413700 yfaW 321314002602 yfaW Salmonella enterica subsp. enterica serovar Choleraesuis str. galactonate dehydratase YP_217281.1 2412495 R 321314 CDS YP_217282.1 62180865 complement(2413714..2414496) 1 NC_006905.1 IPR005473: Bacterial transcription regulator, ICLR-like family; transcriptional regulator 2414496 yfaX 321314002603 yfaX Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_217282.1 2413714 R 321314 CDS YP_217283.1 62180866 complement(2414746..2415942) 1 NC_006905.1 IPR001453: Molybdenum cofactor biosynthesis protein; competence damage-inducible protein A 2415942 cinA 321314002604 cinA Salmonella enterica subsp. enterica serovar Choleraesuis str. competence damage-inducible protein A YP_217283.1 2414746 R 321314 CDS YP_217284.1 62180867 2416877..2417302 1 NC_006905.1 IPR000086: NUDIX hydrolase; IPR002667: Isopentenyl-diphosphate delta-isomerase; hypothetical protein 2417302 yfaO 321314002606 yfaO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217284.1 2416877 D 321314 CDS YP_217285.1 62180868 complement(2417347..2417952) 1 NC_006905.1 aluminum resistance protein 2417952 ais 321314002607 ais Salmonella enterica subsp. enterica serovar Choleraesuis str. aluminum resistance protein YP_217285.1 2417347 R 321314 CDS YP_217286.1 62180869 2418251..2419390 1 NC_006905.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2419390 yfbE 321314002608 yfbE Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YP_217286.1 2418251 D 321314 CDS YP_217287.1 62180870 2419393..2420376 1 NC_006905.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2420376 pmrF 321314002609 pmrF Salmonella enterica subsp. enterica serovar Choleraesuis str. undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_217287.1 2419393 D 321314 CDS YP_217288.1 62180871 2422351..2423250 1 NC_006905.1 hypothetical protein 2423250 yfbH 321314002611 yfbH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217288.1 2422351 D 321314 CDS YP_217289.1 62180872 2423247..2424893 1 NC_006905.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2424893 arnT 321314002612 arnT Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-amino-4-deoxy-L-arabinose transferase YP_217289.1 2423247 D 321314 CDS YP_217290.1 62180873 2424890..2425225 1 NC_006905.1 inner membrane protein 2425225 yfbW 321314002613 yfbW Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217290.1 2424890 D 321314 CDS YP_217291.1 62180874 2425225..2425602 1 NC_006905.1 hypothetical protein 2425602 yfbJ 321314002614 yfbJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217291.1 2425225 D 321314 CDS YP_217292.1 62180875 complement(2425952..2427319) 1 NC_006905.1 IPR000873: AMP-dependent synthetase and ligase; O-succinylbenzoic acid--CoA ligase 2427319 menE 321314002616 menE Salmonella enterica subsp. enterica serovar Choleraesuis str. O-succinylbenzoic acid--CoA ligase YP_217292.1 2425952 R 321314 CDS YP_217293.1 62180876 complement(2427316..2428278) 1 NC_006905.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 2428278 menC 321314002617 menC Salmonella enterica subsp. enterica serovar Choleraesuis str. O-succinylbenzoate synthase YP_217293.1 2427316 R 321314 CDS YP_217294.1 62180877 complement(2428278..2429135) 1 NC_006905.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 2429135 menB 321314002618 menB Salmonella enterica subsp. enterica serovar Choleraesuis str. naphthoate synthase YP_217294.1 2428278 R 321314 CDS YP_217295.1 62180878 complement(2429150..2429908) 1 NC_006905.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase 2429908 yfbB 321314002619 yfbB Salmonella enterica subsp. enterica serovar Choleraesuis str. acyl-CoA thioester hydrolase YP_217295.1 2429150 R 321314 CDS YP_217296.1 62180879 complement(2429905..2431575) 1 NC_006905.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 2431575 menD 321314002620 menD Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_217296.1 2429905 R 321314 CDS YP_217297.1 62180880 complement(2431661..2432956) 1 NC_006905.1 synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase 2432956 menF 321314002621 menF Salmonella enterica subsp. enterica serovar Choleraesuis str. menaquinone-specific isochorismate synthase YP_217297.1 2431661 R 321314 CDS YP_217298.1 62180881 complement(2433057..2433362) 1 NC_006905.1 hypothetical protein 2433362 elaB 321314002622 elaB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217298.1 2433057 R 321314 CDS YP_217299.1 62180882 complement(2433417..2433878) 1 NC_006905.1 hypothetical protein 2433878 elaA 321314002623 elaA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217299.1 2433417 R 321314 CDS YP_217300.2 162139569 2433939..2434856 1 NC_006905.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2434856 elaC 321314002624 elaC Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease Z YP_217300.2 2433939 D 321314 CDS YP_217301.1 62180884 2434922..2435923 1 NC_006905.1 IPR001789: Response regulator receiver; IPR002545: CheW-like protein; chemotaxis signal transduction protein 2435923 cheV 321314002625 cheV Salmonella enterica subsp. enterica serovar Choleraesuis str. chemotaxis signal transduction protein YP_217301.1 2434922 D 321314 CDS YP_217302.1 62180885 complement(2435964..2437745) 1 NC_006905.1 IPR002035: von Willebrand factor, type A; von Willebrand factor A 2437745 yfbK 321314002626 yfbK Salmonella enterica subsp. enterica serovar Choleraesuis str. von Willebrand factor A YP_217302.1 2435964 R 321314 CDS YP_217303.1 62180886 complement(2438750..2440207) 1 NC_006905.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 2440207 nuoN 321314002627 nuoN Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit N YP_217303.1 2438750 R 321314 CDS YP_217304.1 62180887 complement(2440214..2441743) 1 NC_006905.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2441743 nuoM 321314002628 nuoM Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit M YP_217304.1 2440214 R 321314 CDS YP_217305.1 62180888 complement(2442057..2443898) 1 NC_006905.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2443898 nuoL 321314002629 nuoL Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit L YP_217305.1 2442057 R 321314 CDS YP_217306.1 62180889 complement(2443895..2444197) 1 NC_006905.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 2444197 nuoK 321314002630 nuoK Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit K YP_217306.1 2443895 R 321314 CDS YP_217307.1 62180890 complement(2444194..2444748) 1 NC_006905.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2444748 nuoJ 321314002631 nuoJ Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit J YP_217307.1 2444194 R 321314 CDS YP_217308.1 62180891 complement(2444759..2445301) 1 NC_006905.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2445301 nuoI 321314002632 nuoI Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit I YP_217308.1 2444759 R 321314 CDS YP_217309.1 62180892 complement(2445316..2446293) 1 NC_006905.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 2446293 nuoH 321314002633 nuoH Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit H YP_217309.1 2445316 R 321314 CDS YP_217310.1 62180893 complement(2446290..2449022) 1 NC_006905.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2449022 nuoG 321314002634 nuoG Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit G YP_217310.1 2446290 R 321314 CDS YP_217311.1 62180894 complement(2449047..2450384) 1 NC_006905.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 2450384 nuoF 321314002635 nuoF Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase I subunit F YP_217311.1 2449047 R 321314 CDS YP_217312.1 62180895 complement(2450381..2450881) 1 NC_006905.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 2450881 nuoE 321314002636 nuoE Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit E YP_217312.1 2450381 R 321314 CDS YP_217313.1 62180896 complement(2450884..2452686) 1 NC_006905.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 2452686 nuoC 321314002637 nuoC Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_217313.1 2450884 R 321314 CDS YP_217314.1 62180897 complement(2452773..2453435) 1 NC_006905.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2453435 nuoB 321314002638 nuoB Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit B YP_217314.1 2452773 R 321314 CDS YP_217315.1 62180898 complement(2453451..2453894) 1 NC_006905.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2453894 nuoA 321314002639 nuoA Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH dehydrogenase subunit A YP_217315.1 2453451 R 321314 CDS YP_217316.1 62180899 complement(2454289..2454441) 1 NC_006905.1 hypothetical protein 2454441 321314002640 SC2329 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217316.1 2454289 R 321314 CDS YP_217317.1 62180900 complement(2454521..2455459) 1 NC_006905.1 IPR000169: Eukaryotic thiol (cysteine) protease; IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 2455459 lrhA 321314002641 lrhA Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_217317.1 2454521 R 321314 CDS YP_217318.1 62180901 complement(2456125..2456310) 1 NC_006905.1 hypothetical protein 2456310 321314002642 SC2331 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217318.1 2456125 R 321314 CDS YP_217319.1 62180902 2456392..2457606 1 NC_006905.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase 2457606 yfbQ 321314002643 yfbQ Salmonella enterica subsp. enterica serovar Choleraesuis str. aminotransferase YP_217319.1 2456392 D 321314 CDS YP_217320.1 62180903 2457700..2458299 1 NC_006905.1 hypothetical protein 2458299 yfbR 321314002644 yfbR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217320.1 2457700 D 321314 CDS YP_217321.1 62180904 complement(2458405..2460231) 1 NC_006905.1 IPR001898: Sodium/sulphate symporter; response regulator 2460231 yfbS 321314002645 yfbS Salmonella enterica subsp. enterica serovar Choleraesuis str. response regulator YP_217321.1 2458405 R 321314 CDS YP_217322.2 162139568 complement(2460308..2460967) 1 NC_006905.1 IPR005833: Haloacid dehalogenase/epoxide hydrolase; phosphatase 2460967 yfbT 321314002646 yfbT Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphatase YP_217322.2 2460308 R 321314 CDS YP_217323.1 62180906 complement(2460978..2461472) 1 NC_006905.1 IPR005587: YfbU; hypothetical protein 2461472 yfbU 321314002647 yfbU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217323.1 2460978 R 321314 CDS YP_217324.1 62180907 complement(2461555..2462010) 1 NC_006905.1 hypothetical protein 2462010 yfbV 321314002648 yfbV Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217324.1 2461555 R 321314 CDS YP_217325.1 62180908 2462350..2463552 1 NC_006905.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2463552 ackA 321314002649 ackA Salmonella enterica subsp. enterica serovar Choleraesuis str. acetate kinase YP_217325.1 2462350 D 321314 CDS YP_217326.1 62180909 2463629..2465773 1 NC_006905.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2465773 pta 321314002650 pta Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphate acetyltransferase YP_217326.1 2463629 D 321314 CDS YP_217327.1 62180910 2465991..2467511 1 NC_006905.1 IPR006162: Phosphopantetheine attachment site; hypothetical protein 2467511 yfcC 321314002651 yfcC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217327.1 2465991 D 321314 CDS YP_217328.1 62180911 complement(2467560..2468513) 1 NC_006905.1 transketolase 2468513 tktC 321314002652 tktC Salmonella enterica subsp. enterica serovar Choleraesuis str. transketolase YP_217328.1 2467560 R 321314 CDS YP_217329.1 62180912 complement(2468506..2469336) 1 NC_006905.1 transketolase 2469336 tktN 321314002653 tktN Salmonella enterica subsp. enterica serovar Choleraesuis str. transketolase YP_217329.1 2468506 R 321314 CDS YP_217330.2 162139567 complement(2469333..2470730) 1 NC_006905.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 2470730 ulaA 321314002654 ulaA Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system ascorbate-specific transporter subunit IIC YP_217330.2 2469333 R 321314 CDS YP_217331.1 62180914 complement(2470745..2471017) 1 NC_006905.1 hypothetical protein 2471017 321314002655 SC2344 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217331.1 2470745 R 321314 CDS YP_217332.1 62180915 complement(2471098..2471541) 1 NC_006905.1 IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system 2471541 ptxA 321314002656 ptxA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransferase system YP_217332.1 2471098 R 321314 CDS YP_217333.1 62180916 2471794..2472813 1 NC_006905.1 IPR000843: Bacterial regulatory protein LacI, HTH motif; transcriptional regulator 2472813 gntR 321314002657 gntR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_217333.1 2471794 D 321314 CDS YP_217334.1 62180917 complement(2472819..2473373) 1 NC_006905.1 IPR002667: Isopentenyl-diphosphate delta-isomerase; hypothetical protein 2473373 yfcD 321314002658 yfcD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217334.1 2472819 R 321314 CDS YP_217335.1 62180918 complement(2473430..2473981) 1 NC_006905.1 IPR000979: Protein of unknown function UPF0025; IPR004843: Metallo-phosphoesterase; phosphodiesterase 2473981 yfcE 321314002659 yfcE Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphodiesterase YP_217335.1 2473430 R 321314 CDS YP_217336.1 62180919 complement(2474037..2474681) 1 NC_006905.1 IPR004045: Glutathione S-transferase, N-terminal; glutathione-S-transferase 2474681 yfcF 321314002660 yfcF Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione-S-transferase YP_217336.1 2474037 R 321314 CDS YP_217337.1 62180920 2474824..2475471 1 NC_006905.1 IPR004045: Glutathione S-transferase, N-terminal; IPR004046: Glutathione S-transferase, C-terminal; glutathione S-transferase 2475471 yfcG 321314002661 yfcG Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione S-transferase YP_217337.1 2474824 D 321314 CDS YP_217338.1 62180921 2475597..2476490 1 NC_006905.1 hypothetical protein 2476490 yfcH 321314002662 yfcH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217338.1 2475597 D 321314 CDS YP_217339.1 62180922 complement(2476542..2477318) 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; histidine/lysine/arginine/ornithine transporter subunit 2477318 hisP 321314002663 hisP Salmonella enterica subsp. enterica serovar Choleraesuis str. histidine/lysine/arginine/ornithine transporter subunit YP_217339.1 2476542 R 321314 CDS YP_217340.1 62180923 complement(2477329..2478036) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; histidine and lysine/arginine/ornithine ABC transporter 2478036 hisM 321314002664 hisM Salmonella enterica subsp. enterica serovar Choleraesuis str. histidine and lysine/arginine/ornithine ABC transporter YP_217340.1 2477329 R 321314 CDS YP_217341.1 62180924 complement(2478033..2478719) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; lysine/arginine/ornithine ABC transporter 2478719 hisQ 321314002665 hisQ Salmonella enterica subsp. enterica serovar Choleraesuis str. lysine/arginine/ornithine ABC transporter YP_217341.1 2478033 R 321314 CDS YP_217342.1 62180925 complement(2478902..2479684) 1 NC_006905.1 IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; histidine ABC transporter ATP-binding protein 2479684 hisJ 321314002666 hisJ Salmonella enterica subsp. enterica serovar Choleraesuis str. histidine ABC transporter ATP-binding protein YP_217342.1 2478902 R 321314 CDS YP_217343.1 62180926 complement(2479922..2480704) 1 NC_006905.1 IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; lysine/arginine/ornithine ABC transporter ATP-binding protein 2480704 argT 321314002667 argT Salmonella enterica subsp. enterica serovar Choleraesuis str. lysine/arginine/ornithine ABC transporter ATP-binding protein YP_217343.1 2479922 R 321314 CDS YP_217344.1 62180927 complement(2480824..2480976) 1 NC_006905.1 hypothetical protein 2480976 321314002668 SC2357 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217344.1 2480824 R 321314 CDS YP_217345.1 62180928 complement(2480992..2481561) 1 NC_006905.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2481561 ubiX 321314002669 ubiX Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_217345.1 2480992 R 321314 CDS YP_217346.1 62180929 complement(2481588..2482994) 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; amino acid transporter 2482994 rocE 321314002670 rocE Salmonella enterica subsp. enterica serovar Choleraesuis str. amino acid transporter YP_217346.1 2481588 R 321314 CDS YP_217347.1 62180930 complement(2483058..2484161) 1 NC_006905.1 hypothetical protein 2484161 321314002671 SC2360 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217347.1 2483058 R 321314 CDS YP_217348.1 62180931 complement(2484163..2485584) 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; amino acid transporter 2485584 321314002672 SC2361 Salmonella enterica subsp. enterica serovar Choleraesuis str. amino acid transporter YP_217348.1 2484163 R 321314 CDS YP_217349.1 62180932 complement(2485675..2487072) 1 NC_006905.1 IPR000183: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 2487072 dcdA 321314002673 dcdA Salmonella enterica subsp. enterica serovar Choleraesuis str. diaminopimelate decarboxylase YP_217349.1 2485675 R 321314 CDS YP_217350.1 62180933 2487283..2488710 1 NC_006905.1 IPR000014: PAS domain; IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; regulatory protein 2488710 rocR 321314002674 rocR Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein YP_217350.1 2487283 D 321314 CDS YP_217351.1 62180934 complement(2488746..2490263) 1 NC_006905.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2490263 purF 321314002675 purF Salmonella enterica subsp. enterica serovar Choleraesuis str. amidophosphoribosyltransferase YP_217351.1 2488746 R 321314 CDS YP_217352.1 62180935 complement(2490301..2490789) 1 NC_006905.1 membrane protein required for colicin V production; colicin V production protein 2490789 cvpA 321314002676 cvpA Salmonella enterica subsp. enterica serovar Choleraesuis str. colicin V production protein YP_217352.1 2490301 R 321314 CDS YP_217353.1 62180936 complement(2491100..2491774) 1 NC_006905.1 IPR000694: Proline-rich region; hypothetical protein 2491774 dedD 321314002677 dedD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217353.1 2491100 R 321314 CDS YP_217354.1 62180937 complement(2491764..2493032) 1 NC_006905.1 IPR001645: Folylpolyglutamate synthetase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2493032 folC 321314002678 folC Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_217354.1 2491764 R 321314 CDS YP_217355.2 162139566 complement(2493100..2494014) 1 NC_006905.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2494014 accD 321314002679 accD Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl-CoA carboxylase subunit beta YP_217355.2 2493100 R 321314 CDS YP_217356.1 62180939 complement(2494164..2494823) 1 NC_006905.1 IPR000252: DedA family; hypothetical protein 2494823 dedA 321314002680 dedA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217356.1 2494164 R 321314 CDS YP_217357.1 62180940 complement(2494872..2495684) 1 NC_006905.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2495684 truA 321314002681 truA Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA pseudouridine synthase A YP_217357.1 2494872 R 321314 CDS YP_217358.1 62180941 complement(2495684..2496697) 1 NC_006905.1 semialdehyde dehydrogenase 2496697 usg 321314002682 usg Salmonella enterica subsp. enterica serovar Choleraesuis str. semialdehyde dehydrogenase YP_217358.1 2495684 R 321314 CDS YP_217359.1 62180942 complement(2496765..2498015) 1 NC_006905.1 catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 2498015 pdxB 321314002683 pdxB Salmonella enterica subsp. enterica serovar Choleraesuis str. erythronate-4-phosphate dehydrogenase YP_217359.1 2496765 R 321314 CDS YP_217360.2 229037908 2498005..2499006 1 NC_006905.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2499006 flk 321314002684 flk Salmonella enterica subsp. enterica serovar Choleraesuis str. flagella biosynthesis regulator YP_217360.2 2498005 D 321314 CDS YP_217361.1 62180944 complement(2499003..2500181) 1 NC_006905.1 IPR007114: Major facilitator superfamily; hypothetical protein 2500181 yfcJ 321314002685 yfcJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217361.1 2499003 R 321314 CDS YP_217362.1 62180945 complement(2500361..2500735) 1 NC_006905.1 hypothetical protein 2500735 321314002686 SC2375 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217362.1 2500361 R 321314 CDS YP_217363.1 62180946 2500908..2501156 1 NC_006905.1 putatiave helix-turn-helix regulatory protein 2501156 ner 321314002687 ner Salmonella enterica subsp. enterica serovar Choleraesuis str. putatiave helix-turn-helix regulatory protein YP_217363.1 2500908 D 321314 CDS YP_217364.1 62180947 2501325..2501693 1 NC_006905.1 hypothetical protein 2501693 321314002688 SC2377 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217364.1 2501325 D 321314 CDS YP_217365.1 62180948 2501693..2502211 1 NC_006905.1 hypothetical protein 2502211 321314002689 SC2378 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217365.1 2501693 D 321314 CDS YP_217366.1 62180949 complement(2502278..2502934) 1 NC_006905.1 inner membrane protein 2502934 yprA 321314002690 yprA Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217366.1 2502278 R 321314 CDS YP_217367.1 62180950 complement(2503032..2504246) 1 NC_006905.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2504246 fabB 321314002691 fabB Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-oxoacyl-ACP synthase YP_217367.1 2503032 R 321314 CDS YP_217368.2 162139565 2504406..2506406 1 NC_006905.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2506406 mnmC 321314002692 mnmC Salmonella enterica subsp. enterica serovar Choleraesuis str. 5-methylaminomethyl-2-thiouridine methyltransferase YP_217368.2 2504406 D 321314 CDS YP_217369.1 62180952 complement(2506458..2506733) 1 NC_006905.1 hypothetical protein 2506733 yfcL 321314002693 yfcL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217369.1 2506458 R 321314 CDS YP_217370.1 62180953 complement(2506766..2507314) 1 NC_006905.1 hypothetical protein 2507314 yfcM 321314002694 yfcM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217370.1 2506766 R 321314 CDS YP_217371.1 62180954 complement(2507314..2508123) 1 NC_006905.1 hypothetical protein 2508123 yfcA 321314002695 yfcA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217371.1 2507314 R 321314 CDS YP_217372.1 62180955 complement(2508123..2508947) 1 NC_006905.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 2508947 mepA 321314002696 mepA Salmonella enterica subsp. enterica serovar Choleraesuis str. penicillin-insensitive murein endopeptidase YP_217372.1 2508123 R 321314 CDS YP_217373.1 62180956 complement(2508951..2510036) 1 NC_006905.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2510036 aroC 321314002697 aroC Salmonella enterica subsp. enterica serovar Choleraesuis str. chorismate synthase YP_217373.1 2508951 R 321314 CDS YP_217374.1 62180957 complement(2510072..2511004) 1 NC_006905.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2511004 yfcB 321314002698 yfcB Salmonella enterica subsp. enterica serovar Choleraesuis str. N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_217374.1 2510072 R 321314 CDS YP_217375.1 62180958 2511224..2511721 1 NC_006905.1 IPR002625: Smr protein/MutS2 C-terminal; hypothetical protein 2511721 yfcN 321314002699 yfcN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217375.1 2511224 D 321314 CDS YP_217376.1 62180959 complement(2511821..2512306) 1 NC_006905.1 phosphohistidine phosphatase 2512306 sixA 321314002700 sixA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphohistidine phosphatase YP_217376.1 2511821 R 321314 CDS YP_217377.1 62180960 complement(2512515..2514662) 1 NC_006905.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 2514662 fadJ 321314002701 fadJ Salmonella enterica subsp. enterica serovar Choleraesuis str. multifunctional fatty acid oxidation complex subunit alpha YP_217377.1 2512515 R 321314 CDS YP_217378.1 62180961 complement(2514662..2515972) 1 NC_006905.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2515972 fadI 321314002702 fadI Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-ketoacyl-CoA thiolase YP_217378.1 2514662 R 321314 CDS YP_217379.1 62180962 complement(2516150..2516458) 1 NC_006905.1 IPR005272: Conserved hypothetical protein 743; hypothetical protein 2516458 yfcZ 321314002703 yfcZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217379.1 2516150 R 321314 CDS YP_217380.1 62180963 2516799..2518112 1 NC_006905.1 IPR005017: Membrane protein involved in aromatic hydrocarbon degradation; long-chain fatty acid outer membrane transporter 2518112 fadL 321314002704 fadL Salmonella enterica subsp. enterica serovar Choleraesuis str. long-chain fatty acid outer membrane transporter YP_217380.1 2516799 D 321314 CDS YP_217381.1 62180964 complement(2518173..2518928) 1 NC_006905.1 lipoprotein 2518928 vacJ 321314002705 vacJ Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein YP_217381.1 2518173 R 321314 CDS YP_217382.1 62180965 2519217..2520158 1 NC_006905.1 hypothetical protein 2520158 yfdC 321314002706 yfdC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217382.1 2519217 D 321314 CDS YP_217383.1 62180966 complement(2520465..2521403) 1 NC_006905.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease 2521403 pgtE 321314002708 pgtE Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protease YP_217383.1 2520465 R 321314 CDS YP_217384.1 62180967 complement(2521671..2522759) 1 NC_006905.1 IPR001789: Response regulator receiver; IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; phosphoglycerate transport activator 2522759 pgtA 321314002709 pgtA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglycerate transport activator YP_217384.1 2521671 R 321314 CDS YP_217385.1 62180968 complement(2522908..2524914) 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR005467: Histidine kinase; phosphoglycerate transporter 2524914 pgtB 321314002710 pgtB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglycerate transporter YP_217385.1 2522908 R 321314 CDS YP_217386.1 62180969 complement(2524911..2526221) 1 NC_006905.1 phosphoglycerate transporter 2526221 pgtC 321314002711 pgtC Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglycerate transporter YP_217386.1 2524911 R 321314 CDS YP_217387.1 62180970 2526540..2527931 1 NC_006905.1 IPR000849: GlpT transporter; IPR007114: Major facilitator superfamily; phosphoglycerate transporter 2527931 pgtP 321314002712 pgtP Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglycerate transporter YP_217387.1 2526540 D 321314 CDS YP_217388.1 62180971 complement(2528207..2528449) 1 NC_006905.1 hypothetical protein 2528449 yfdY 321314002713 yfdY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217388.1 2528207 R 321314 CDS YP_217389.1 62180972 2528971..2529888 1 NC_006905.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; lipid A biosynthesis palmitoleoyl acyltransferase 2529888 ddg 321314002714 ddg Salmonella enterica subsp. enterica serovar Choleraesuis str. lipid A biosynthesis palmitoleoyl acyltransferase YP_217389.1 2528971 D 321314 CDS YP_217390.1 62180973 complement(2529889..2530572) 1 NC_006905.1 integrase 2530572 yis2 321314002715 yis2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_217390.1 2529889 R 321314 CDS YP_217391.1 62180974 complement(2530743..2531144) 1 NC_006905.1 hypothetical protein 2531144 321314002716 SC2404 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217391.1 2530743 R 321314 CDS YP_217392.1 62180975 complement(2531730..2532968) 1 NC_006905.1 aminotransferase 2532968 yfdZ 321314002717 yfdZ Salmonella enterica subsp. enterica serovar Choleraesuis str. aminotransferase YP_217392.1 2531730 R 321314 CDS YP_217393.1 62180976 complement(2533691..2534656) 1 NC_006905.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 2534656 glk 321314002718 glk Salmonella enterica subsp. enterica serovar Choleraesuis str. glucokinase YP_217393.1 2533691 R 321314 CDS YP_217394.1 62180977 2534860..2536095 1 NC_006905.1 IPR001807: Cl- channel, voltage gated; hypothetical protein 2536095 yfeO 321314002719 yfeO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217394.1 2534860 D 321314 CDS YP_217395.1 62180978 complement(2536115..2537767) 1 NC_006905.1 IPR000399: Pyruvate decarboxylase; IPR000408: Regulator of chromosome condensation, RCC1; thiamine pyrophosphate enzyme 2537767 dciP 321314002720 dciP Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine pyrophosphate enzyme YP_217395.1 2536115 R 321314 CDS YP_217396.1 62180979 2537947..2538945 1 NC_006905.1 IPR001395: Aldo/keto reductase; IPR005399: KCNAB voltage-gated K+ channel, beta subunit; oxidoreductase 2538945 yghZ 321314002721 yghZ Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_217396.1 2537947 D 321314 CDS YP_217397.1 62180980 2539059..2539385 1 NC_006905.1 hypothetical protein 2539385 ypeC 321314002722 ypeC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217397.1 2539059 D 321314 CDS YP_217398.1 62180981 complement(2539446..2540687) 1 NC_006905.1 IPR001046: Natural resistance-associated macrophage protein; manganese transport protein MntH 2540687 mntH 321314002723 mntH Salmonella enterica subsp. enterica serovar Choleraesuis str. manganese transport protein MntH YP_217398.1 2539446 R 321314 CDS YP_217399.1 62180982 2541030..2542232 1 NC_006905.1 IPR002668: Na+ dependent nucleoside transporter; NUP family nucleoside transport 2542232 nupC 321314002724 nupC Salmonella enterica subsp. enterica serovar Choleraesuis str. NUP family nucleoside transport YP_217399.1 2541030 D 321314 CDS YP_217400.1 62180983 complement(2542285..2544474) 1 NC_006905.1 IPR001633: EAL domain; diguanylate cyclase/phosphodiesterase domain-containing protein 2544474 yfeA 321314002725 yfeA Salmonella enterica subsp. enterica serovar Choleraesuis str. diguanylate cyclase/phosphodiesterase domain-containing protein YP_217400.1 2542285 R 321314 CDS YP_217401.1 62180984 2545080..2545442 1 NC_006905.1 negative regulator 2545442 yfeC 321314002728 yfeC Salmonella enterica subsp. enterica serovar Choleraesuis str. negative regulator YP_217401.1 2545080 D 321314 CDS YP_217402.1 62180985 2545444..2545836 1 NC_006905.1 negative regulator 2545836 yfeD 321314002729 yfeD Salmonella enterica subsp. enterica serovar Choleraesuis str. negative regulator YP_217402.1 2545444 D 321314 CDS YP_217403.1 62180986 complement(2545890..2547305) 1 NC_006905.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2547305 gltX 321314002730 gltX Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamyl-tRNA synthetase YP_217403.1 2545890 R 321314 CDS YP_217404.1 62180987 complement(2547995..2548879) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; DNA-binding transcriptional activator XapR 2548879 xapR 321314002734 xapR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator XapR YP_217404.1 2547995 R 321314 CDS YP_217405.1 62180988 complement(2548931..2549089) 1 NC_006905.1 hypothetical protein 2549089 321314002735 SC2418 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217405.1 2548931 R 321314 CDS YP_217406.1 62180989 complement(2549148..2550404) 1 NC_006905.1 IPR004740: Nucleoside:H+ symporter; IPR007114: Major facilitator superfamily; major facilitator superfamily xanthosine permease 2550404 xapB 321314002736 xapB Salmonella enterica subsp. enterica serovar Choleraesuis str. major facilitator superfamily xanthosine permease YP_217406.1 2549148 R 321314 CDS YP_217407.1 62180990 complement(2550459..2551292) 1 NC_006905.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2551292 xapA 321314002737 xapA Salmonella enterica subsp. enterica serovar Choleraesuis str. purine nucleoside phosphorylase YP_217407.1 2550459 R 321314 CDS YP_217408.1 62180991 2551548..2552309 1 NC_006905.1 hypothetical protein 2552309 yfeN 321314002738 yfeN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217408.1 2551548 D 321314 CDS YP_217409.1 62180992 complement(2552371..2553297) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 2553297 yfeR 321314002739 yfeR Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_217409.1 2552371 R 321314 CDS YP_217410.1 62180993 2553387..2554385 1 NC_006905.1 hypothetical protein 2554385 yfeH 321314002740 yfeH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217410.1 2553387 D 321314 CDS YP_217411.1 62180994 complement(2554382..2554600) 1 NC_006905.1 hypothetical protein 2554600 ypeB 321314002741 ypeB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217411.1 2554382 R 321314 CDS YP_217412.1 62180995 complement(2554602..2556617) 1 NC_006905.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2556617 ligA 321314002742 ligA Salmonella enterica subsp. enterica serovar Choleraesuis str. NAD-dependent DNA ligase LigA YP_217412.1 2554602 R 321314 CDS YP_217413.1 62180996 complement(2556689..2557714) 1 NC_006905.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 2557714 zipA 321314002743 zipA Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein ZipA YP_217413.1 2556689 R 321314 CDS YP_217414.1 62180997 2557908..2558669 1 NC_006905.1 role in sulfur assimilation; sulfate transport protein CysZ 2558669 cysZ 321314002744 cysZ Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfate transport protein CysZ YP_217414.1 2557908 D 321314 CDS YP_217415.1 62180998 2558981..2559952 1 NC_006905.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2559952 cysK 321314002745 cysK Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine synthase A YP_217415.1 2558981 D 321314 CDS YP_217416.1 62180999 2560336..2560593 1 NC_006905.1 IPR000032: Phosphocarrier HPr protein; IPR001020: HPr histidine phosphorylation site; IPR002114: HPr serine phosphorylation site; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2560593 pthP 321314002746 pthP Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr YP_217416.1 2560336 D 321314 CDS YP_217417.1 62181000 2560642..2562369 1 NC_006905.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 2562369 ptsI 321314002747 ptsI Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoenolpyruvate-protein phosphotransferase YP_217417.1 2560642 D 321314 CDS YP_217418.1 62181001 2562410..2562919 1 NC_006905.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2562919 crr 321314002748 crr Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system glucose-specific transporter YP_217418.1 2562410 D 321314 CDS YP_217419.1 62181002 complement(2563069..2563308) 1 NC_006905.1 IPR002086: Aldehyde dehydrogenase; hypothetical protein 2563308 321314002749 SC2432 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217419.1 2563069 R 321314 CDS YP_217420.1 62181003 complement(2563305..2564171) 1 NC_006905.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 2564171 pdxK 321314002750 pdxK Salmonella enterica subsp. enterica serovar Choleraesuis str. pyridoxal kinase YP_217420.1 2563305 R 321314 CDS YP_217421.1 62181004 2564254..2565546 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 2565546 ptsJ 321314002751 ptsJ Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_217421.1 2564254 D 321314 CDS YP_217422.1 62181005 2565561..2566280 1 NC_006905.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2566280 yfeJ 321314002752 yfeJ Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamine amidotransferase YP_217422.1 2565561 D 321314 CDS YP_217423.1 62181006 2566249..2566719 1 NC_006905.1 hypothetical protein 2566719 yfeK 321314002753 yfeK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217423.1 2566249 D 321314 CDS YP_217424.1 62181007 2566732..2567271 1 NC_006905.1 membrane carboxypeptidase 2567271 yfeL 321314002754 yfeL Salmonella enterica subsp. enterica serovar Choleraesuis str. membrane carboxypeptidase YP_217424.1 2566732 D 321314 CDS YP_217425.1 62181008 complement(2567177..2567383) 1 NC_006905.1 hypothetical protein 2567383 321314002755 SC2438 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217425.1 2567177 R 321314 CDS YP_217426.2 162139564 complement(2567402..2568313) 1 NC_006905.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2568313 cysM 321314002756 cysM Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine synthase B YP_217426.2 2567402 R 321314 CDS YP_217427.1 62181010 complement(2568381..2569478) 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; sulfate/thiosulfate transporter subunit 2569478 cysA 321314002757 cysA Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfate/thiosulfate transporter subunit YP_217427.1 2568381 R 321314 CDS YP_217428.1 62181011 complement(2569468..2570343) 1 NC_006905.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit 2570343 cysW 321314002758 cysW Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfate/thiosulfate transporter permease subunit YP_217428.1 2569468 R 321314 CDS YP_217429.1 62181012 complement(2570343..2571176) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; sulfate/thiosulfate transporter subunit 2571176 cysU 321314002759 cysU Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfate/thiosulfate transporter subunit YP_217429.1 2570343 R 321314 CDS YP_217430.1 62181013 complement(2571176..2572192) 1 NC_006905.1 IPR000957: Prokaryotic sulfate-/thiosulfate-binding protein; IPR002052: N-6 Adenine-specific DNA methylase; thiosulfate transporter subunit 2572192 cysP 321314002760 cysP Salmonella enterica subsp. enterica serovar Choleraesuis str. thiosulfate transporter subunit YP_217430.1 2571176 R 321314 CDS YP_217431.1 62181014 complement(2572350..2573141) 1 NC_006905.1 IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR002424: Insect alcohol dehydrogenase family;IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; short chain dehydrogenase 2573141 ucpA 321314002761 ucpA Salmonella enterica subsp. enterica serovar Choleraesuis str. short chain dehydrogenase YP_217431.1 2572350 R 321314 CDS YP_217432.1 62181015 complement(2573389..2574288) 1 NC_006905.1 hypothetical protein 2574288 yfeX 321314002762 yfeX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217432.1 2573389 R 321314 CDS YP_217433.1 62181016 complement(2574383..2574958) 1 NC_006905.1 hypothetical protein 2574958 yfeY 321314002763 yfeY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217433.1 2574383 R 321314 CDS YP_217434.1 62181017 complement(2575020..2575469) 1 NC_006905.1 hypothetical protein 2575469 yfeZ 321314002764 yfeZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217434.1 2575020 R 321314 CDS YP_217435.2 162139563 complement(2575456..2575881) 1 NC_006905.1 acetyltransferase 2575881 ypeA 321314002765 ypeA Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyltransferase YP_217435.2 2575456 R 321314 CDS YP_217436.1 62181019 2576094..2576963 1 NC_006905.1 N-acetylmuramoyl-L-alanine amidase 2576963 amiA 321314002766 amiA Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylmuramoyl-L-alanine amidase YP_217436.1 2576094 D 321314 CDS YP_217437.1 62181020 2576966..2577865 1 NC_006905.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2577865 hemF 321314002767 hemF Salmonella enterica subsp. enterica serovar Choleraesuis str. coproporphyrinogen III oxidase YP_217437.1 2576966 D 321314 CDS YP_217438.1 62181021 2577886..2578215 1 NC_006905.1 inner membrane protein 2578215 ypfK 321314002768 ypfK Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217438.1 2577886 D 321314 CDS YP_217439.1 62181022 complement(2578351..2578629) 1 NC_006905.1 hypothetical protein 2578629 321314002769 SC2452 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217439.1 2578351 R 321314 CDS YP_217440.1 62181023 complement(2578663..2579715) 1 NC_006905.1 activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR 2579715 eutR 321314002770 eutR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator EutR YP_217440.1 2578663 R 321314 CDS YP_217441.1 62181024 complement(2580270..2580929) 1 NC_006905.1 carboxysome structural protein, ethanolamine utilization 2580929 eutL 321314002772 eutL Salmonella enterica subsp. enterica serovar Choleraesuis str. carboxysome structural protein, ethanolamine utilization YP_217441.1 2580270 R 321314 CDS YP_217442.1 62181025 complement(2581853..2583214) 1 NC_006905.1 ethanolamine ammonia-lyase, heavy chain 2583214 eutB 321314002774 eutB Salmonella enterica subsp. enterica serovar Choleraesuis str. ethanolamine ammonia-lyase, heavy chain YP_217442.1 2581853 R 321314 CDS YP_217443.1 62181026 complement(2584626..2585852) 1 NC_006905.1 hypothetical protein 2585852 eutH 321314002776 eutH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217443.1 2584626 R 321314 CDS YP_217444.1 62181027 complement(2585972..2587159) 1 NC_006905.1 IPR001670: Iron-containing alcohol dehydrogenase; transport protein in ethanolamine utilization 2587159 eutG 321314002777 eutG Salmonella enterica subsp. enterica serovar Choleraesuis str. transport protein in ethanolamine utilization YP_217444.1 2585972 R 321314 CDS YP_217445.1 62181028 complement(2587149..2587988) 1 NC_006905.1 IPR001023: Heat shock protein Hsp70; heatshock protein (Hsp70) 2587988 eutJ 321314002778 eutJ Salmonella enterica subsp. enterica serovar Choleraesuis str. heatshock protein (Hsp70) YP_217445.1 2587149 R 321314 CDS YP_217446.1 62181029 complement(2587999..2589402) 1 NC_006905.1 aldehyde oxidoreductase in ethanolamine utilization 2589402 eutE 321314002779 eutE Salmonella enterica subsp. enterica serovar Choleraesuis str. aldehyde oxidoreductase in ethanolamine utilization YP_217446.1 2587999 R 321314 CDS YP_217447.1 62181030 complement(2589414..2589701) 1 NC_006905.1 IPR004992: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; detox protein in ethanolamine utilization 2589701 eutN 321314002780 eutN Salmonella enterica subsp. enterica serovar Choleraesuis str. detox protein in ethanolamine utilization YP_217447.1 2589414 R 321314 CDS YP_217448.1 62181031 complement(2589814..2590104) 1 NC_006905.1 IPR000249: Bacterial microcompartments protein; detox protein in ethanolamine utilization 2590104 eutM 321314002781 eutM Salmonella enterica subsp. enterica serovar Choleraesuis str. detox protein in ethanolamine utilization YP_217448.1 2589814 R 321314 CDS YP_217449.1 62181032 complement(2590145..2591161) 1 NC_006905.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2591161 eutD 321314002782 eutD Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransacetylase YP_217449.1 2590145 R 321314 CDS YP_217450.1 62181033 complement(2591158..2591955) 1 NC_006905.1 cobalamin adenosyltransferase 2591955 eutT 321314002783 eutT Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalamin adenosyltransferase YP_217450.1 2591158 R 321314 CDS YP_217451.1 62181034 complement(2591952..2592641) 1 NC_006905.1 ethanolamine utilization protein 2592641 eutQ 321314002784 eutQ Salmonella enterica subsp. enterica serovar Choleraesuis str. ethanolamine utilization protein YP_217451.1 2591952 R 321314 CDS YP_217452.1 62181035 complement(2592619..2593107) 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); ethanolamine utilization protein 2593107 eutP 321314002785 eutP Salmonella enterica subsp. enterica serovar Choleraesuis str. ethanolamine utilization protein YP_217452.1 2592619 R 321314 CDS YP_217453.1 62181036 complement(2593111..2593446) 1 NC_006905.1 carboxysome structural protein, ethanol utilization 2593446 eutS 321314002786 eutS Salmonella enterica subsp. enterica serovar Choleraesuis str. carboxysome structural protein, ethanol utilization YP_217453.1 2593111 R 321314 CDS YP_217454.1 62181037 complement(2593863..2596142) 1 NC_006905.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 2596142 maeB 321314002787 maeB Salmonella enterica subsp. enterica serovar Choleraesuis str. malic enzyme YP_217454.1 2593863 R 321314 CDS YP_217455.1 62181038 2596144..2596344 1 NC_006905.1 hypothetical protein 2596344 321314002788 SC2468 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217455.1 2596144 D 321314 CDS YP_217456.1 62181039 2596414..2597364 1 NC_006905.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase A 2597364 talA 321314002789 talA Salmonella enterica subsp. enterica serovar Choleraesuis str. transaldolase A YP_217456.1 2596414 D 321314 CDS YP_217457.1 62181040 2597384..2599384 1 NC_006905.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2599384 tktB 321314002790 tktB Salmonella enterica subsp. enterica serovar Choleraesuis str. transketolase YP_217457.1 2597384 D 321314 CDS YP_217458.1 62181041 complement(2599447..2599737) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; hypothetical protein 2599737 321314002791 SC2471 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217458.1 2599447 R 321314 CDS YP_217459.1 62181042 complement(2599805..2600848) 1 NC_006905.1 hypothetical protein 2600848 ypfG 321314002792 ypfG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217459.1 2599805 R 321314 CDS YP_217460.1 62181043 complement(2600973..2601548) 1 NC_006905.1 hypothetical protein 2601548 yffH 321314002793 yffH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217460.1 2600973 R 321314 CDS YP_217461.1 62181044 2601752..2603050 1 NC_006905.1 hypothetical protein 2603050 yfeW 321314002794 yfeW Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217461.1 2601752 D 321314 CDS YP_217462.1 62181045 complement(2603499..2605466) 1 NC_006905.1 unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); oxidoreductase Fe-S binding subunit 2605466 aegA 321314002795 aegA Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase Fe-S binding subunit YP_217462.1 2603499 R 321314 CDS YP_217463.1 62181046 2607537..2610650 1 NC_006905.1 IPR001036: Acriflavin resistance protein; aminoglycoside/multidrug efflux system 2610650 acrD 321314002797 acrD Salmonella enterica subsp. enterica serovar Choleraesuis str. aminoglycoside/multidrug efflux system YP_217463.1 2607537 D 321314 CDS YP_217464.1 62181047 2611224..2611580 1 NC_006905.1 hypothetical protein 2611580 yffB 321314002798 yffB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217464.1 2611224 D 321314 CDS YP_217465.1 62181048 2611584..2612711 1 NC_006905.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2612711 dapE 321314002799 dapE Salmonella enterica subsp. enterica serovar Choleraesuis str. succinyl-diaminopimelate desuccinylase YP_217465.1 2611584 D 321314 CDS YP_217466.1 62181049 2612739..2612939 1 NC_006905.1 hypothetical protein 2612939 321314002800 SC2479 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217466.1 2612739 D 321314 CDS YP_217467.1 62181050 complement(2612966..2614984) 1 NC_006905.1 hypothetical protein 2614984 ypfI 321314002801 ypfI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217467.1 2612966 R 321314 CDS YP_217468.1 62181051 complement(2615000..2615863) 1 NC_006905.1 IPR006025: Neutral zinc metallopeptidases, zinc-binding site; hypothetical protein 2615863 ypfJ 321314002802 ypfJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217468.1 2615000 R 321314 CDS YP_217469.1 62181052 complement(2615994..2616707) 1 NC_006905.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2616707 purC 321314002803 purC Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoribosylaminoimidazole-succinocarboxamide synthase YP_217469.1 2615994 R 321314 CDS YP_217470.1 62181053 complement(2616882..2617916) 1 NC_006905.1 IPR001360: Glycoside hydrolase, family 1; lipoprotein 2617916 nlpB 321314002804 nlpB Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein YP_217470.1 2616882 R 321314 CDS YP_217471.1 62181054 complement(2617933..2618811) 1 NC_006905.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2618811 dapA 321314002805 dapA Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydrodipicolinate synthase YP_217471.1 2617933 R 321314 CDS YP_217472.2 162139562 2618958..2619530 1 NC_006905.1 negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2619530 gcvR 321314002806 gcvR Salmonella enterica subsp. enterica serovar Choleraesuis str. glycine cleavage system transcriptional repressor YP_217472.2 2618958 D 321314 CDS YP_217473.1 62181056 2619530..2620000 1 NC_006905.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2620000 bcp 321314002807 bcp Salmonella enterica subsp. enterica serovar Choleraesuis str. thioredoxin-dependent thiol peroxidase YP_217473.1 2619530 D 321314 CDS YP_217474.1 62181057 complement(2620047..2621186) 1 NC_006905.1 IPR004381: Conserved hypothetical protein 45; hypothetical protein 2621186 grk 321314002808 grk Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217474.1 2620047 R 321314 CDS YP_217475.1 62181058 complement(2621192..2622460) 1 NC_006905.1 permease 2622460 321314002809 SC2488 Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_217475.1 2621192 R 321314 CDS YP_217476.1 62181059 complement(2622528..2623709) 1 NC_006905.1 regulatory protein 2623709 cdaR 321314002810 cdaR Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein YP_217476.1 2622528 R 321314 CDS YP_217477.1 62181060 complement(2623992..2625059) 1 NC_006905.1 PerM family permease 2625059 perM 321314002811 perM Salmonella enterica subsp. enterica serovar Choleraesuis str. PerM family permease YP_217477.1 2623992 R 321314 CDS YP_217478.1 62181061 2625267..2626730 1 NC_006905.1 IPR001440: TPR repeat; hypothetical protein 2626730 yfgC 321314002812 yfgC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217478.1 2625267 D 321314 CDS YP_217479.1 62181062 2626770..2627129 1 NC_006905.1 arsenate reductase 2627129 yfgD 321314002813 yfgD Salmonella enterica subsp. enterica serovar Choleraesuis str. arsenate reductase YP_217479.1 2626770 D 321314 CDS YP_217480.1 62181063 complement(2627156..2627881) 1 NC_006905.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2627881 yfgE 321314002814 yfgE Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA replication initiation factor YP_217480.1 2627156 R 321314 CDS YP_217481.1 62181064 complement(2627952..2629241) 1 NC_006905.1 IPR006042: Xanthine/uracil permease family; uracil transporter 2629241 uraA 321314002815 uraA Salmonella enterica subsp. enterica serovar Choleraesuis str. uracil transporter YP_217481.1 2627952 R 321314 CDS YP_217482.1 62181065 complement(2629329..2629955) 1 NC_006905.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2629955 upp 321314002816 upp Salmonella enterica subsp. enterica serovar Choleraesuis str. uracil phosphoribosyltransferase YP_217482.1 2629329 R 321314 CDS YP_217483.1 62181066 2630368..2631405 1 NC_006905.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2631405 purM 321314002817 purM Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoribosylaminoimidazole synthetase YP_217483.1 2630368 D 321314 CDS YP_217484.1 62181067 2631405..2632043 1 NC_006905.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2632043 purN 321314002818 purN Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoribosylglycinamide formyltransferase YP_217484.1 2631405 D 321314 CDS YP_217485.1 62181068 2632232..2634298 1 NC_006905.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2634298 ppk 321314002819 ppk Salmonella enterica subsp. enterica serovar Choleraesuis str. polyphosphate kinase YP_217485.1 2632232 D 321314 CDS YP_217486.1 62181069 2634375..2635844 1 NC_006905.1 exopolyphosphatase 2635844 ppx 321314002820 ppx Salmonella enterica subsp. enterica serovar Choleraesuis str. exopolyphosphatase YP_217486.1 2634375 D 321314 CDS YP_217487.1 62181070 complement(2635880..2638093) 1 NC_006905.1 IPR001633: EAL domain; diguanylate cyclase 2638093 yfgF 321314002821 yfgF Salmonella enterica subsp. enterica serovar Choleraesuis str. diguanylate cyclase YP_217487.1 2635880 R 321314 CDS YP_217488.1 62181071 complement(2638190..2638327) 1 NC_006905.1 hypothetical protein 2638327 321314002822 SC2501 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217488.1 2638190 R 321314 CDS YP_217489.1 62181072 2638506..2638697 1 NC_006905.1 inner membrane protein 2638697 yfgG 321314002823 yfgG Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217489.1 2638506 D 321314 CDS YP_217490.1 62181073 complement(2638850..2639113) 1 NC_006905.1 hypothetical protein 2639113 321314002824 SC2503 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217490.1 2638850 R 321314 CDS YP_217491.1 62181074 2639408..2639722 1 NC_006905.1 IPR002453: Beta tubulin; hypothetical protein 2639722 321314002825 SC2504 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217491.1 2639408 D 321314 CDS YP_217492.1 62181075 complement(2639743..2640087) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; IS3-like transposase 2640087 insF 321314002826 insF Salmonella enterica subsp. enterica serovar Choleraesuis str. IS3-like transposase YP_217492.1 2639743 R 321314 CDS YP_217493.1 62181076 complement(2640508..2642886) 1 NC_006905.1 hypothetical protein 2642886 321314002827 SC2506 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217493.1 2640508 R 321314 CDS YP_217494.1 62181077 complement(2642981..2643241) 1 NC_006905.1 phage integrase family site specific recombinase 2643241 int 321314002828 int Salmonella enterica subsp. enterica serovar Choleraesuis str. phage integrase family site specific recombinase YP_217494.1 2642981 R 321314 CDS YP_217495.1 62181078 complement(2643546..2645123) 1 NC_006905.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2645123 guaA 321314002829 guaA Salmonella enterica subsp. enterica serovar Choleraesuis str. GMP synthase YP_217495.1 2643546 R 321314 CDS YP_217496.1 62181079 complement(2645193..2646845) 1 NC_006905.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2646845 imdH 321314002830 imdH Salmonella enterica subsp. enterica serovar Choleraesuis str. inosine 5'-monophosphate dehydrogenase YP_217496.1 2645193 R 321314 CDS YP_217497.2 162139561 2646821..2648170 1 NC_006905.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2648170 xseA 321314002831 xseA Salmonella enterica subsp. enterica serovar Choleraesuis str. exodeoxyribonuclease VII large subunit YP_217497.2 2646821 D 321314 CDS YP_217498.1 62181081 complement(2655082..2662389) 1 NC_006905.1 IPR008541: Salmonella Protein of unknown function DUF823; IPR008542: Salmonella Protein of unknown function DUF824; outer membrane protein 2662389 ratB 321314002833 ratB Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_217498.1 2655082 R 321314 CDS YP_217499.1 62181082 complement(2662555..2668152) 1 NC_006905.1 outer membrane protein 2668152 ratA 321314002834 ratA Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_217499.1 2662555 R 321314 CDS YP_217500.1 62181083 complement(2668272..2669231) 1 NC_006905.1 outer membrane protein 2669231 sinI 321314002835 sinI Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_217500.1 2668272 R 321314 CDS YP_217501.1 62181084 complement(2669289..2671481) 1 NC_006905.1 IPR003535: Intimin bacterial adhesion mediator protein; intimin-like protein 2671481 sinH 321314002836 sinH Salmonella enterica subsp. enterica serovar Choleraesuis str. intimin-like protein YP_217501.1 2669289 R 321314 CDS YP_217502.1 62181085 complement(2671827..2672048) 1 NC_006905.1 hypothetical protein 2672048 yfgJ 321314002837 yfgJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217502.1 2671827 R 321314 CDS YP_217503.1 62181086 complement(2672137..2673609) 1 NC_006905.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2673609 engA 321314002838 engA Salmonella enterica subsp. enterica serovar Choleraesuis str. GTP-binding protein EngA YP_217503.1 2672137 R 321314 CDS YP_217504.1 62181087 complement(2673728..2674906) 1 NC_006905.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 2674906 yfgL 321314002839 yfgL Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein assembly complex subunit YfgL YP_217504.1 2673728 R 321314 CDS YP_217505.1 62181088 complement(2674917..2675537) 1 NC_006905.1 hypothetical protein 2675537 yfgM 321314002840 yfgM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217505.1 2674917 R 321314 CDS YP_217506.1 62181089 complement(2675551..2676825) 1 NC_006905.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2676825 hisS 321314002841 hisS Salmonella enterica subsp. enterica serovar Choleraesuis str. histidyl-tRNA synthetase YP_217506.1 2675551 R 321314 CDS YP_217507.1 62181090 complement(2676936..2678054) 1 NC_006905.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2678054 ispG 321314002842 ispG Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_217507.1 2676936 R 321314 CDS YP_217508.1 62181091 complement(2678081..2679085) 1 NC_006905.1 cytoskeletal protein RodZ 2679085 yfgA 321314002843 yfgA Salmonella enterica subsp. enterica serovar Choleraesuis str. cytoskeletal protein RodZ YP_217508.1 2678081 R 321314 CDS YP_217509.1 62181092 complement(2679377..2680543) 1 NC_006905.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2680543 yfgB 321314002844 yfgB Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosomal RNA large subunit methyltransferase N YP_217509.1 2679377 R 321314 CDS YP_217510.1 62181093 complement(2680750..2681181) 1 NC_006905.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2681181 ndk 321314002845 ndk Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleoside diphosphate kinase YP_217510.1 2680750 R 321314 CDS YP_217511.1 62181094 complement(2681302..2682165) 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; polyferredoxin 2682165 321314002846 SC2524 Salmonella enterica subsp. enterica serovar Choleraesuis str. polyferredoxin YP_217511.1 2681302 R 321314 CDS YP_217512.1 62181095 complement(2682165..2682974) 1 NC_006905.1 dimethylsulfoxide reductase 2682974 ynfH 321314002847 ynfH Salmonella enterica subsp. enterica serovar Choleraesuis str. dimethylsulfoxide reductase YP_217512.1 2682165 R 321314 CDS YP_217513.1 62181096 complement(2682967..2683596) 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; anaerobic dimethylsulfoxide reductase 2683596 dmsB 321314002848 dmsB Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic dimethylsulfoxide reductase YP_217513.1 2682967 R 321314 CDS YP_217514.1 62181097 complement(2683593..2685998) 1 NC_006905.1 IPR006655: Prokaryotic molybdopterin oxidoreductase; anaerobic dimethylsulfoxide reductase 2685998 dmsA 321314002849 dmsA Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic dimethylsulfoxide reductase YP_217514.1 2683593 R 321314 CDS YP_217515.1 62181098 2693586..2694428 1 NC_006905.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2694428 sseA 321314002852 sseA Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-mercaptopyruvate sulfurtransferase YP_217515.1 2693586 D 321314 CDS YP_217516.1 62181099 2694675..2695343 1 NC_006905.1 hypothetical protein 2695343 321314002853 SC2529 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217516.1 2694675 D 321314 CDS YP_217517.1 62181100 complement(2695912..2696697) 1 NC_006905.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 2696697 sseB 321314002854 sseB Salmonella enterica subsp. enterica serovar Choleraesuis str. enhanced serine sensitivity protein SseB YP_217517.1 2695912 R 321314 CDS YP_217518.2 162139560 complement(2696795..2698078) 1 NC_006905.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase 2698078 pepB 321314002855 pepB Salmonella enterica subsp. enterica serovar Choleraesuis str. aminopeptidase YP_217518.2 2696795 R 321314 CDS YP_217519.1 62181102 complement(2698256..2698456) 1 NC_006905.1 hypothetical protein 2698456 yfhJ 321314002856 yfhJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217519.1 2698256 R 321314 CDS YP_217520.1 62181103 complement(2698468..2698803) 1 NC_006905.1 IPR001055: Adrenodoxin; [2FE-2S] ferredoxin 2698803 fdx 321314002857 fdx Salmonella enterica subsp. enterica serovar Choleraesuis str. [2FE-2S] ferredoxin YP_217520.1 2698468 R 321314 CDS YP_217521.1 62181104 complement(2700667..2701182) 1 NC_006905.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2701182 hscB 321314002859 hscB Salmonella enterica subsp. enterica serovar Choleraesuis str. co-chaperone HscB YP_217521.1 2700667 R 321314 CDS YP_217522.1 62181105 complement(2701378..2701701) 1 NC_006905.1 forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein 2701701 iscA 321314002860 iscA Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-sulfur cluster assembly protein YP_217522.1 2701378 R 321314 CDS YP_217523.1 62181106 complement(2701730..2702116) 1 NC_006905.1 scaffold protein 2702116 nifU 321314002861 nifU Salmonella enterica subsp. enterica serovar Choleraesuis str. scaffold protein YP_217523.1 2701730 R 321314 CDS YP_217524.1 62181107 complement(2702144..2703358) 1 NC_006905.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2703358 nifS 321314002862 nifS Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine desulfurase YP_217524.1 2702144 R 321314 CDS YP_217525.1 62181108 complement(2703539..2704033) 1 NC_006905.1 regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR 2704033 yfhP 321314002863 yfhP Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator IscR YP_217525.1 2703539 R 321314 CDS YP_217526.1 62181109 complement(2704192..2704923) 1 NC_006905.1 rRNA methylase 2704923 yfhQ 321314002864 yfhQ Salmonella enterica subsp. enterica serovar Choleraesuis str. rRNA methylase YP_217526.1 2704192 R 321314 CDS YP_217527.1 62181110 2705042..2705845 1 NC_006905.1 IPR000760: Inositol monophosphatase; inositol monophosphatase 2705845 suhB 321314002865 suhB Salmonella enterica subsp. enterica serovar Choleraesuis str. inositol monophosphatase YP_217527.1 2705042 D 321314 CDS YP_217528.1 62181111 2705990..2706868 1 NC_006905.1 IPR000379: Esterase/lipase/thioesterase; hydrolase 2706868 yfhR 321314002866 yfhR Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase YP_217528.1 2705990 D 321314 CDS YP_217529.1 62181112 2707050..2708093 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; anaerobic sulfide reductase 2708093 asrA 321314002867 asrA Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic sulfide reductase YP_217529.1 2707050 D 321314 CDS YP_217530.1 62181113 2708097..2708915 1 NC_006905.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2708915 asrB 321314002868 asrB Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic sulfite reductase subunit B YP_217530.1 2708097 D 321314 CDS YP_217531.1 62181114 2708926..2709939 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; IPR006066: Nitrite and sulfite reductase iron-sulfur/siroheme-binding site; anaerobic sulfide reductase 2709939 asrC 321314002869 asrC Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic sulfide reductase YP_217531.1 2708926 D 321314 CDS YP_217532.1 62181115 complement(2709940..2710926) 1 NC_006905.1 inner membrane protein 2710926 321314002870 SC2545 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217532.1 2709940 R 321314 CDS YP_217533.1 62181116 complement(2710917..2711555) 1 NC_006905.1 hypothetical protein 2711555 321314002871 SC2546 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217533.1 2710917 R 321314 CDS YP_217534.1 62181117 2711681..2712958 1 NC_006905.1 stationary phase inducible protein CsiE 2712958 csiE 321314002872 csiE Salmonella enterica subsp. enterica serovar Choleraesuis str. stationary phase inducible protein CsiE YP_217534.1 2711681 D 321314 CDS YP_217535.1 62181118 complement(2712953..2714092) 1 NC_006905.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter 2714092 hcaT 321314002873 hcaT Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-phenylpropionic acid transporter YP_217535.1 2712953 R 321314 CDS YP_217536.1 62181119 complement(2714288..2715541) 1 NC_006905.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2715541 glyA 321314002874 glyA Salmonella enterica subsp. enterica serovar Choleraesuis str. serine hydroxymethyltransferase YP_217536.1 2714288 R 321314 CDS YP_217537.1 62181120 complement(2715556..2715804) 1 NC_006905.1 hypothetical protein 2715804 321314002875 SC2550 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217537.1 2715556 R 321314 CDS YP_217538.1 62181121 2715866..2717056 1 NC_006905.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2717056 hmpA 321314002876 hmpA Salmonella enterica subsp. enterica serovar Choleraesuis str. nitric oxide dioxygenase YP_217538.1 2715866 D 321314 CDS YP_217539.1 62181122 2717238..2718782 1 NC_006905.1 regulates the cadBA operon; DNA-binding transcriptional activator CadC 2718782 cadC 321314002877 cadC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator CadC YP_217539.1 2717238 D 321314 CDS YP_217540.1 62181123 2719143..2720474 1 NC_006905.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2720474 cadB 321314002878 cadB Salmonella enterica subsp. enterica serovar Choleraesuis str. lysine/cadaverine antiporter YP_217540.1 2719143 D 321314 CDS YP_217541.1 62181124 2720557..2722701 1 NC_006905.1 IPR000310: Orn/Lys/Arg decarboxylase, major region; IPR005308: Orn/Lys/Arg decarboxylase, N-terminal domain; IPR008286: Orn/Lys/Arg decarboxylase, C-terminal; lysine decarboxylase 1 2722701 cadA 321314002879 cadA Salmonella enterica subsp. enterica serovar Choleraesuis str. lysine decarboxylase 1 YP_217541.1 2720557 D 321314 CDS YP_217542.1 62181125 2722757..2724217 1 NC_006905.1 IPR000109: TGF-beta receptor, type I/II extracellular region; IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR007114: Major facilitator superfamily; POT family di-/tripeptide transport protein 2724217 yjdL 321314002880 yjdL Salmonella enterica subsp. enterica serovar Choleraesuis str. POT family di-/tripeptide transport protein YP_217542.1 2722757 D 321314 CDS YP_217543.1 62181126 complement(2724266..2724604) 1 NC_006905.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 2724604 glnB 321314002881 glnB Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrogen regulatory protein P-II 1 YP_217543.1 2724266 R 321314 CDS YP_217544.1 62181127 complement(2724681..2726018) 1 NC_006905.1 IPR001789: Response regulator receiver; IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; transcriptional regulator of two-component regulator protein (EBP familiiy) 2726018 yfhA 321314002882 yfhA Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator of two-component regulator protein (EBP familiiy) YP_217544.1 2724681 R 321314 CDS YP_217545.1 62181128 complement(2726015..2726845) 1 NC_006905.1 hypothetical protein 2726845 yfhG 321314002883 yfhG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217545.1 2726015 R 321314 CDS YP_217546.1 62181129 complement(2726781..2728223) 1 NC_006905.1 IPR003594: ATP-binding region, ATPase-like; IPR003660: Histidine kinase, HAMP region; IPR003661: Histidine kinase A, N-terminal;IPR004358: Bacterial sensor protein, C-terminal;IPR005467: Histidine kinase; sensory kinase in regulatory system 2728223 yfhK 321314002884 yfhK Salmonella enterica subsp. enterica serovar Choleraesuis str. sensory kinase in regulatory system YP_217546.1 2726781 R 321314 CDS YP_217547.1 62181130 complement(2728716..2732603) 1 NC_006905.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2732603 purG 321314002885 purG Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoribosylformylglycinamidine synthase YP_217547.1 2728716 R 321314 CDS YP_217548.1 62181131 2732717..2732854 1 NC_006905.1 hypothetical protein 2732854 321314002886 SC2561 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217548.1 2732717 D 321314 CDS YP_217549.1 62181132 2732859..2734403 1 NC_006905.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 2734403 yfhD 321314002887 yfhD Salmonella enterica subsp. enterica serovar Choleraesuis str. transglycosylase YP_217549.1 2732859 D 321314 CDS YP_217550.1 62181133 complement(2734454..2735005) 1 NC_006905.1 IPR002125: Cytidine/deoxycytidylate deaminase, zinc-binding region; tRNA-specific adenosine deaminase 2735005 yfhC 321314002888 yfhC Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA-specific adenosine deaminase YP_217550.1 2734454 R 321314 CDS YP_217551.1 62181134 complement(2735030..2735665) 1 NC_006905.1 hypothetical protein 2735665 yfhB 321314002889 yfhB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217551.1 2735030 R 321314 CDS YP_217552.1 62181135 complement(2735669..2737030) 1 NC_006905.1 IPR001996: Phosphotransferase system PTS, EIIB domain; phosphotransferase system IIB components 2737030 yfeV 321314002890 yfeV Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransferase system IIB components YP_217552.1 2735669 R 321314 CDS YP_217553.1 62181136 complement(2737041..2737934) 1 NC_006905.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 2737934 murQ 321314002891 murQ Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylmuramic acid 6-phosphate etherase YP_217553.1 2737041 R 321314 CDS YP_217554.1 62181137 2738050..2738898 1 NC_006905.1 DNA-binding transcriptional regulator 2738898 yfhH 321314002892 yfhH Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator YP_217554.1 2738050 D 321314 CDS YP_217555.1 62181138 complement(2738937..2739854) 1 NC_006905.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2739854 panE 321314002893 panE Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-dehydropantoate 2-reductase YP_217555.1 2738937 R 321314 CDS YP_217556.1 62181139 complement(2739876..2741072) 1 NC_006905.1 IPR007114: Major facilitator superfamily; permease 2741072 yhjX 321314002894 yhjX Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_217556.1 2739876 R 321314 CDS YP_217557.1 62181140 2741188..2742114 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 2742114 budR 321314002895 budR Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_217557.1 2741188 D 321314 CDS YP_217558.1 62181141 2742152..2742412 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; ferredoxin 2742412 yfhL 321314002896 yfhL Salmonella enterica subsp. enterica serovar Choleraesuis str. ferredoxin YP_217558.1 2742152 D 321314 CDS YP_217559.1 62181142 complement(2742524..2742904) 1 NC_006905.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2742904 acpS 321314002897 acpS Salmonella enterica subsp. enterica serovar Choleraesuis str. 4'-phosphopantetheinyl transferase YP_217559.1 2742524 R 321314 CDS YP_217560.1 62181143 complement(2742904..2743635) 1 NC_006905.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2743635 pdxJ 321314002898 pdxJ Salmonella enterica subsp. enterica serovar Choleraesuis str. pyridoxine 5'-phosphate synthase YP_217560.1 2742904 R 321314 CDS YP_217561.1 62181144 complement(2743647..2744375) 1 NC_006905.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2744375 recO 321314002899 recO Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA repair protein RecO YP_217561.1 2743647 R 321314 CDS YP_217562.1 62181145 complement(2744387..2745292) 1 NC_006905.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2745292 era 321314002900 era Salmonella enterica subsp. enterica serovar Choleraesuis str. GTP-binding protein Era YP_217562.1 2744387 R 321314 CDS YP_217563.1 62181146 complement(2745289..2746026) 1 NC_006905.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2746026 rnc 321314002901 rnc Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease III YP_217563.1 2745289 R 321314 CDS YP_217564.1 62181147 complement(2746242..2747216) 1 NC_006905.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 2747216 lepB 321314002902 lepB Salmonella enterica subsp. enterica serovar Choleraesuis str. signal peptidase I YP_217564.1 2746242 R 321314 CDS YP_217565.1 62181148 complement(2747233..2749032) 1 NC_006905.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2749032 lepA 321314002903 lepA Salmonella enterica subsp. enterica serovar Choleraesuis str. GTP-binding protein LepA YP_217565.1 2747233 R 321314 CDS YP_217566.1 62181149 2749431..2750927 1 NC_006905.1 hypothetical protein 2750927 gogB 321314002904 gogB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217566.1 2749431 D 321314 CDS YP_217567.1 62181150 2751154..2751330 1 NC_006905.1 hypothetical protein 2751330 321314002905 SC2580 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217567.1 2751154 D 321314 CDS YP_217568.1 62181151 complement(2751745..2752161) 1 NC_006905.1 similar to genes in P2-like phages; Fels-2 prophage Tfa 2752161 tfa 321314002906 tfa Salmonella enterica subsp. enterica serovar Choleraesuis str. Fels-2 prophage Tfa YP_217568.1 2751745 R 321314 CDS YP_217569.1 62181152 complement(2752168..2753580) 1 NC_006905.1 similar to invertase (pin) in phage E14; Fels-2 prophage Pin 2753580 pin 321314002907 pin Salmonella enterica subsp. enterica serovar Choleraesuis str. Fels-2 prophage Pin YP_217569.1 2752168 R 321314 CDS YP_217571.1 62181154 complement(2753580..2754260) 1 NC_006905.1 bacteriophage protein 2754260 321314002908 SC2584 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217571.1 2753580 R 321314 CDS YP_217572.1 62181155 complement(2754257..2755456) 1 NC_006905.1 bacteriophage protein 2755456 321314002909 SC2585 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217572.1 2754257 R 321314 CDS YP_217573.1 62181156 complement(2755457..2755810) 1 NC_006905.1 bacteriophage protein 2755810 321314002910 SC2586 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217573.1 2755457 R 321314 CDS YP_217574.1 62181157 complement(2755946..2756701) 1 NC_006905.1 bacteriophage protein 2756701 321314002911 SC2587 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217574.1 2755946 R 321314 CDS YP_217575.1 62181158 complement(2756765..2757550) 1 NC_006905.1 hypothetical protein 2757550 321314002912 SC2588 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217575.1 2756765 R 321314 CDS YP_217576.1 62181159 complement(2757615..2758178) 1 NC_006905.1 bacteriophage protein 2758178 321314002913 SC2589 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217576.1 2757615 R 321314 CDS YP_217577.1 62181160 complement(2758252..2758410) 1 NC_006905.1 hypothetical protein 2758410 321314002914 SC2590 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217577.1 2758252 R 321314 CDS YP_217578.1 62181161 2758511..2758888 1 NC_006905.1 IPR005569: Arc-like DNA binding domain; regulatory protein 2758888 321314002915 SC2591 Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein YP_217578.1 2758511 D 321314 CDS YP_217579.1 62181162 complement(2758895..2759230) 1 NC_006905.1 hypothetical protein 2759230 321314002916 SC2592 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217579.1 2758895 R 321314 CDS YP_217580.1 62181163 complement(2759227..2760258) 1 NC_006905.1 bacteriophage protein 2760258 321314002917 SC2593 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217580.1 2759227 R 321314 CDS YP_217581.1 62181164 complement(2760261..2760563) 1 NC_006905.1 bacteriophage protein 2760563 321314002918 SC2594 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217581.1 2760261 R 321314 CDS YP_217582.1 62181165 complement(2760567..2761217) 1 NC_006905.1 bacteriophage protein 2761217 321314002919 SC2595 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217582.1 2760567 R 321314 CDS YP_217583.1 62181166 complement(2761217..2763169) 1 NC_006905.1 bacteriophage protein 2763169 321314002920 SC2596 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217583.1 2761217 R 321314 CDS YP_217584.1 62181167 complement(2763347..2763799) 1 NC_006905.1 bacteriophage protein 2763799 321314002921 SC2597 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217584.1 2763347 R 321314 CDS YP_217585.1 62181168 complement(2763803..2764246) 1 NC_006905.1 bacteriophage protein 2764246 321314002922 SC2598 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217585.1 2763803 R 321314 CDS YP_217586.1 62181169 complement(2764259..2765404) 1 NC_006905.1 bacteriophage protein 2765404 321314002923 SC2599 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217586.1 2764259 R 321314 CDS YP_217587.1 62181170 complement(2765408..2765971) 1 NC_006905.1 bacteriophage protein 2765971 321314002924 SC2600 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217587.1 2765408 R 321314 CDS YP_217588.1 62181171 complement(2765946..2766335) 1 NC_006905.1 bacteriophage protein 2766335 321314002925 SC2601 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217588.1 2765946 R 321314 CDS YP_217589.1 62181172 complement(2766322..2766876) 1 NC_006905.1 bacteriophage protein 2766876 321314002926 SC2602 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217589.1 2766322 R 321314 CDS YP_217590.1 62181173 complement(2766873..2767280) 1 NC_006905.1 bacteriophage protein 2767280 321314002927 SC2603 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217590.1 2766873 R 321314 CDS YP_217591.1 62181174 complement(2767246..2767614) 1 NC_006905.1 bacteriophage protein 2767614 321314002928 SC2604 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217591.1 2767246 R 321314 CDS YP_217592.1 62181175 complement(2767656..2768597) 1 NC_006905.1 bacteriophage protein 2768597 321314002929 SC2605 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217592.1 2767656 R 321314 CDS YP_217593.1 62181176 complement(2768609..2769106) 1 NC_006905.1 bacteriophage protein 2769106 321314002930 SC2606 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217593.1 2768609 R 321314 CDS YP_217594.1 62181177 complement(2769111..2770343) 1 NC_006905.1 hypothetical protein 2770343 321314002931 SC2607 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217594.1 2769111 R 321314 CDS YP_217595.1 62181178 complement(2770358..2770966) 1 NC_006905.1 bacteriophage protein 2770966 321314002932 SC2608 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217595.1 2770358 R 321314 CDS YP_217596.1 62181179 complement(2770980..2772449) 1 NC_006905.1 hypothetical protein 2772449 321314002933 SC2609 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217596.1 2770980 R 321314 CDS YP_217597.1 62181180 complement(2772449..2774071) 1 NC_006905.1 hypothetical protein 2774071 321314002934 SC2610 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217597.1 2772449 R 321314 CDS YP_217598.1 62181181 complement(2774074..2774652) 1 NC_006905.1 hypothetical protein 2774652 321314002935 SC2611 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217598.1 2774074 R 321314 CDS YP_217599.1 62181182 complement(2774766..2775290) 1 NC_006905.1 hypothetical protein 2775290 321314002936 SC2612 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217599.1 2774766 R 321314 CDS YP_217600.1 62181183 complement(2775508..2775957) 1 NC_006905.1 hypothetical protein 2775957 enpP 321314002937 enpP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217600.1 2775508 R 321314 CDS YP_217601.1 62181184 complement(2775975..2776427) 1 NC_006905.1 IPR002196: Glycoside hydrolase, family 24; Gifsy-2 prophage lysozyme 2776427 lycV 321314002938 lycV Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage lysozyme YP_217601.1 2775975 R 321314 CDS YP_217602.1 62181185 complement(2776411..2776746) 1 NC_006905.1 Gifsy-1 prophage protein 2776746 321314002939 SC2615 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage protein YP_217602.1 2776411 R 321314 CDS YP_217603.1 62181186 2777016..2777702 1 NC_006905.1 IPR006025: Neutral zinc metallopeptidases, zinc-binding site; hypothetical protein 2777702 gtgA 321314002940 gtgA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217603.1 2777016 D 321314 CDS YP_217604.1 62181187 2778063..2778512 1 NC_006905.1 Gifsy-2 prophage protein 2778512 321314002941 SC2617 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage protein YP_217604.1 2778063 D 321314 CDS YP_217605.1 62181188 complement(2778648..2778773) 1 NC_006905.1 Gifsy-2 prophage protein 2778773 321314002942 SC2618 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage protein YP_217605.1 2778648 R 321314 CDS YP_217606.1 62181189 complement(2779172..2779969) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; IPR003222: Antitermination protein; Gifsy-2 prophage molecular chaperone 2779969 req 321314002943 req Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage molecular chaperone YP_217606.1 2779172 R 321314 CDS YP_217607.1 62181190 complement(2780102..2780713) 1 NC_006905.1 Gifsy-1 prophage NinG 2780713 ninG 321314002944 ninG Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage NinG YP_217607.1 2780102 R 321314 CDS YP_217608.1 62181191 complement(2780716..2780916) 1 NC_006905.1 hypothetical protein 2780916 321314002945 SC2621 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217608.1 2780716 R 321314 CDS YP_217609.1 62181192 complement(2780922..2781524) 1 NC_006905.1 Gifsy-2 prophage protein 2781524 321314002946 SC2622 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage protein YP_217609.1 2780922 R 321314 CDS YP_217610.1 62181193 complement(2781559..2781807) 1 NC_006905.1 bacteriophage protein 2781807 321314002947 SC2623 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217610.1 2781559 R 321314 CDS YP_217611.1 62181194 complement(2781924..2782157) 1 NC_006905.1 Gifsy-1 prophage DinI 2782157 dinI 321314002948 dinI Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage DinI YP_217611.1 2781924 R 321314 CDS YP_217612.1 62181195 complement(2782312..2782578) 1 NC_006905.1 bacteriophage protein 2782578 321314002949 SC2625 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriophage protein YP_217612.1 2782312 R 321314 CDS YP_217613.1 62181196 complement(2782672..2782953) 1 NC_006905.1 hypothetical protein 2782953 321314002950 SC2626 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217613.1 2782672 R 321314 CDS YP_217614.1 62181197 complement(2782964..2783221) 1 NC_006905.1 hypothetical protein 2783221 321314002951 SC2627 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217614.1 2782964 R 321314 CDS YP_217615.1 62181198 complement(2783224..2783487) 1 NC_006905.1 Ead protein 2783487 ead 321314002952 ead Salmonella enterica subsp. enterica serovar Choleraesuis str. Ead protein YP_217615.1 2783224 R 321314 CDS YP_217616.1 62181199 complement(2783575..2783838) 1 NC_006905.1 hypothetical protein 2783838 321314002953 SC2629 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217616.1 2783575 R 321314 CDS YP_217617.1 62181200 complement(2783835..2784182) 1 NC_006905.1 DNA-binding protein 2784182 321314002954 SC2630 Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding protein YP_217617.1 2783835 R 321314 CDS YP_217618.1 62181201 complement(2784193..2784942) 1 NC_006905.1 acts to load the DnaB helicase onto the intiation site durning DNA replication; replication protein 2784942 dnaC 321314002955 dnaC Salmonella enterica subsp. enterica serovar Choleraesuis str. replication protein YP_217618.1 2784193 R 321314 CDS YP_217619.1 62181202 complement(2784945..2785928) 1 NC_006905.1 similar to replication protein 15; IPR006497: Phage replication protein O, N-terminal; Gifsy-1 prophage PrpO 2785928 prpO 321314002956 prpO Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage PrpO YP_217619.1 2784945 R 321314 CDS YP_217620.1 62181203 complement(2786013..2786444) 1 NC_006905.1 similar to cI protein in phage N; Gifsy-1 prophage cI protein 2786444 321314002957 SC2633 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage cI protein YP_217620.1 2786013 R 321314 CDS YP_217621.1 62181204 2786704..2787123 1 NC_006905.1 IPR001387: Helix-turn-helix motif; DNA-binding protein 2787123 321314002958 SC2634 Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding protein YP_217621.1 2786704 D 321314 CDS YP_217622.1 62181205 2787413..2787529 1 NC_006905.1 Gifsy-1 prophage protein 2787529 321314002959 SC2635 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage protein YP_217622.1 2787413 D 321314 CDS YP_217623.1 62181206 2787522..2787680 1 NC_006905.1 Gifsy-1 prophage protein 2787680 321314002960 SC2636 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage protein YP_217623.1 2787522 D 321314 CDS YP_217624.1 62181207 2787702..2788052 1 NC_006905.1 Gifsy-1 prophage protein 2788052 321314002961 SC2637 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage protein YP_217624.1 2787702 D 321314 CDS YP_217625.1 62181208 2788179..2791106 1 NC_006905.1 similar to exodeoxyribonuclease VIII; Gifsy-1 prophage RecE 2791106 recE 321314002962 recE Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage RecE YP_217625.1 2788179 D 321314 CDS YP_217626.1 62181209 2791117..2792226 1 NC_006905.1 Gifsy-2 prophage protein 2792226 321314002963 SC2639 Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-2 prophage protein YP_217626.1 2791117 D 321314 CDS YP_217627.1 62181210 2792269..2792508 1 NC_006905.1 hypothetical protein 2792508 321314002964 SC2640 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217627.1 2792269 D 321314 CDS YP_217628.1 62181211 complement(2792811..2793713) 1 NC_006905.1 similar to integrase in phage; Gifsy-1 prophage Int 2793713 int 321314002965 int Salmonella enterica subsp. enterica serovar Choleraesuis str. Gifsy-1 prophage Int YP_217628.1 2792811 R 321314 CDS YP_217629.1 62181212 complement(2794538..2795017) 1 NC_006905.1 involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 2795017 rseC 321314002966 rseC Salmonella enterica subsp. enterica serovar Choleraesuis str. SoxR reducing system protein RseC YP_217629.1 2794538 R 321314 CDS YP_217630.1 62181213 complement(2795014..2795970) 1 NC_006905.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 2795970 rseB 321314002967 rseB Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic negative regulator of sigmaE YP_217630.1 2795014 R 321314 CDS YP_217631.1 62181214 complement(2795970..2796686) 1 NC_006905.1 anti-RNA polymerase sigma factor SigE 2796686 rseA 321314002968 rseA Salmonella enterica subsp. enterica serovar Choleraesuis str. anti-RNA polymerase sigma factor SigE YP_217631.1 2795970 R 321314 CDS YP_217632.1 62181215 complement(2796652..2797227) 1 NC_006905.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2797227 rpoE 321314002969 rpoE Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA polymerase sigma factor RpoE YP_217632.1 2796652 R 321314 CDS YP_217633.1 62181216 2797652..2799274 1 NC_006905.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2799274 nadB 321314002970 nadB Salmonella enterica subsp. enterica serovar Choleraesuis str. L-aspartate oxidase YP_217633.1 2797652 D 321314 CDS YP_217634.1 62181217 complement(2799205..2800068) 1 NC_006905.1 IPR000051: SAM (and some other nucleotide) binding motif; IPR002052: N-6 Adenine-specific DNA methylase; hypothetical protein 2800068 yfiC 321314002971 yfiC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217634.1 2799205 R 321314 CDS YP_217635.1 62181218 2800126..2801460 1 NC_006905.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2801460 srmB 321314002972 srmB Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent RNA helicase SrmB YP_217635.1 2800126 D 321314 CDS YP_217636.1 62181219 complement(2801478..2802422) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 2802422 yfiE 321314002973 yfiE Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_217636.1 2801478 R 321314 CDS YP_217637.1 62181220 2802480..2803067 1 NC_006905.1 IPR001123: Lysine exporter protein (LYSE/YGGA); neutral amino-acid efflux protein 2803067 yfiK 321314002974 yfiK Salmonella enterica subsp. enterica serovar Choleraesuis str. neutral amino-acid efflux protein YP_217637.1 2802480 D 321314 CDS YP_217638.1 62181221 complement(2803129..2803512) 1 NC_006905.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 2803512 yfiD 321314002975 yfiD Salmonella enterica subsp. enterica serovar Choleraesuis str. autonomous glycyl radical cofactor GrcA YP_217638.1 2803129 R 321314 CDS YP_217639.1 62181222 2803831..2804520 1 NC_006905.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2804520 ung 321314002976 ung Salmonella enterica subsp. enterica serovar Choleraesuis str. uracil-DNA glycosylase YP_217639.1 2803831 D 321314 CDS YP_217640.1 62181223 complement(2804636..2805673) 1 NC_006905.1 IPR001537: tRNA/rRNA methyltransferase (SpoU); methyltransferase 2805673 yfiF 321314002977 yfiF Salmonella enterica subsp. enterica serovar Choleraesuis str. methyltransferase YP_217640.1 2804636 R 321314 CDS YP_217641.1 62181224 2805877..2806296 1 NC_006905.1 IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; thioredoxin 2806296 trxC 321314002978 trxC Salmonella enterica subsp. enterica serovar Choleraesuis str. thioredoxin YP_217641.1 2805877 D 321314 CDS YP_217642.1 62181225 2806369..2807049 1 NC_006905.1 hypothetical protein 2807049 yfiP 321314002979 yfiP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217642.1 2806369 D 321314 CDS YP_217643.1 62181226 2807103..2809763 1 NC_006905.1 acetyl-CoA synthetase 2809763 yfiQ 321314002980 yfiQ Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl-CoA synthetase YP_217643.1 2807103 D 321314 CDS YP_217644.1 62181227 2809875..2811233 1 NC_006905.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2811233 pssA 321314002981 pssA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphatidylserine synthase YP_217644.1 2809875 D 321314 CDS YP_217645.1 62181228 2811278..2811601 1 NC_006905.1 hypothetical protein 2811601 yfiM 321314002982 yfiM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217645.1 2811278 D 321314 CDS YP_217646.1 62181229 complement(2811598..2812899) 1 NC_006905.1 IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; alpha-ketoglutarate transporter 2812899 kgtP 321314002983 kgtP Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha-ketoglutarate transporter YP_217646.1 2811598 R 321314 CDS YP_217647.1 62181230 complement(2813003..2813458) 1 NC_006905.1 hypothetical protein 2813458 321314002984 SC2660 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217647.1 2813003 R 321314 CDS YP_217650.1 62181233 complement(2819353..2821926) 1 NC_006905.1 IPR001270: Chaperonin clpA/B; protein disaggregation chaperone 2821926 clpB 321314002989 clpB Salmonella enterica subsp. enterica serovar Choleraesuis str. protein disaggregation chaperone YP_217650.1 2819353 R 321314 CDS YP_217651.1 62181234 complement(2822056..2822787) 1 NC_006905.1 hypothetical protein 2822787 yfiH 321314002990 yfiH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217651.1 2822056 R 321314 CDS YP_217652.1 62181235 complement(2822784..2823764) 1 NC_006905.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 2823764 rluD 321314002991 rluD Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA pseudouridine synthase D YP_217652.1 2822784 R 321314 CDS YP_217653.1 62181236 2823896..2824633 1 NC_006905.1 with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 2824633 yfiO 321314002992 yfiO Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein assembly complex subunit YfiO YP_217653.1 2823896 D 321314 CDS YP_217654.1 62181237 2824608..2824763 1 NC_006905.1 hypothetical protein 2824763 321314002993 SC2667 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217654.1 2824608 D 321314 CDS YP_217655.1 62181238 2824905..2825243 1 NC_006905.1 associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2825243 yfiA 321314002994 yfiA Salmonella enterica subsp. enterica serovar Choleraesuis str. translation inhibitor protein RaiA YP_217655.1 2824905 D 321314 CDS YP_217656.1 62181239 2825494..2826654 1 NC_006905.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2826654 pheA 321314002995 pheA Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional chorismate mutase/prephenate dehydratase YP_217656.1 2825494 D 321314 CDS YP_217657.1 62181240 complement(2826615..2827523) 1 NC_006905.1 hypothetical protein 2827523 yvrE 321314002996 yvrE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217657.1 2826615 R 321314 CDS YP_217658.1 62181241 complement(2827581..2828702) 1 NC_006905.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 2828702 tyrA 321314002997 tyrA Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional chorismate mutase/prephenate dehydrogenase YP_217658.1 2827581 R 321314 CDS YP_217659.1 62181242 complement(2828712..2829782) 1 NC_006905.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2829782 aroF 321314002998 aroF Salmonella enterica subsp. enterica serovar Choleraesuis str. phospho-2-dehydro-3-deoxyheptonate aldolase YP_217659.1 2828712 R 321314 CDS YP_217660.1 62181243 2830222..2830740 1 NC_006905.1 hypothetical protein 2830740 yfiR 321314002999 yfiR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217660.1 2830222 D 321314 CDS YP_217661.1 62181244 complement(2832110..2832457) 1 NC_006905.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2832457 rplS 321314003001 rplS Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L19 YP_217661.1 2832110 R 321314 CDS YP_217662.1 62181245 complement(2832498..2833265) 1 NC_006905.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2833265 trmD 321314003002 trmD Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA (guanine-N(1)-)-methyltransferase YP_217662.1 2832498 R 321314 CDS YP_217663.2 162139559 complement(2833310..2833858) 1 NC_006905.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2833858 rimM 321314003003 rimM Salmonella enterica subsp. enterica serovar Choleraesuis str. 16S rRNA-processing protein RimM YP_217663.2 2833310 R 321314 CDS YP_217664.2 162139558 complement(2833877..2834125) 1 NC_006905.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2834125 rpsP 321314003004 rpsP Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S16 YP_217664.2 2833877 R 321314 CDS YP_217665.1 62181248 complement(2834378..2835739) 1 NC_006905.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 2835739 ffh 321314003005 ffh Salmonella enterica subsp. enterica serovar Choleraesuis str. signal recognition particle protein YP_217665.1 2834378 R 321314 CDS YP_217666.1 62181249 2835765..2836697 1 NC_006905.1 cytochrome c-type biogenesis heme exporter protein C 2836697 corE 321314003006 corE Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome c-type biogenesis heme exporter protein C YP_217666.1 2835765 D 321314 CDS YP_217667.2 162139557 2836807..2838003 1 NC_006905.1 IPR000644: CBS domain; hypothetical protein 2838003 yfjD 321314003007 yfjD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217667.2 2836807 D 321314 CDS YP_217668.1 62181251 2838124..2838729 1 NC_006905.1 hypothetical protein 2838729 321314003008 SC2681 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217668.1 2838124 D 321314 CDS YP_217670.2 162139555 complement(2838764..2839354) 1 NC_006905.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2839354 grpE 321314003009 grpE Salmonella enterica subsp. enterica serovar Choleraesuis str. heat shock protein GrpE YP_217670.2 2838764 R 321314 CDS YP_217669.2 162139556 2839478..2840356 1 NC_006905.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2840356 ppnK 321314003010 ppnK Salmonella enterica subsp. enterica serovar Choleraesuis str. inorganic polyphosphate/ATP-NAD kinase YP_217669.2 2839478 D 321314 CDS YP_217671.1 62181254 2840442..2842103 1 NC_006905.1 IPR003439: ABC transporter; recombination and repair protein 2842103 recN 321314003011 recN Salmonella enterica subsp. enterica serovar Choleraesuis str. recombination and repair protein YP_217671.1 2840442 D 321314 CDS YP_217672.1 62181255 2842252..2842590 1 NC_006905.1 IPR001993: Mitochondrial substrate carrier; IPR002048: Calcium-binding EF-hand; IPR007450: SmpA/OmlA; hypothetical protein 2842590 smpA 321314003012 smpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217672.1 2842252 D 321314 CDS YP_217673.1 62181256 complement(2842756..2843046) 1 NC_006905.1 hypothetical protein 2843046 yfjF 321314003013 yfjF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217673.1 2842756 R 321314 CDS YP_217674.1 62181257 complement(2843036..2843512) 1 NC_006905.1 IPR004827: Basic-leucine zipper (bZIP) transcription factor; IPR005340: Protein of unknown function UPF0083; hypothetical protein 2843512 yfjG 321314003014 yfjG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217674.1 2843036 R 321314 CDS YP_217675.1 62181258 2843616..2844143 1 NC_006905.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2844143 smpB 321314003015 smpB Salmonella enterica subsp. enterica serovar Choleraesuis str. SsrA-binding protein YP_217675.1 2843616 D 321314 CDS YP_217679.1 62181262 2855368..2856228 1 NC_006905.1 hypothetical protein 2856228 321314003017 SC2692 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217679.1 2855368 D 321314 CDS YP_217680.1 62181263 2856293..2857702 1 NC_006905.1 IPR003423: Outer membrane efflux protein; outer membrane efflux protein 2857702 321314003018 SC2693 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane efflux protein YP_217680.1 2856293 D 321314 CDS YP_217681.1 62181264 2857699..2859879 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter 2859879 rtxI 321314003019 rtxI Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter YP_217681.1 2857699 D 321314 CDS YP_217682.1 62181265 2859860..2861050 1 NC_006905.1 IPR001064: Beta and gamma crystallin; IPR003997: Gram-negative bacterial RTX secretion protein D; IPR006144: HlyD secretion protein, C-terminal; HlyD family secretion protein 2861050 cyaD 321314003020 cyaD Salmonella enterica subsp. enterica serovar Choleraesuis str. HlyD family secretion protein YP_217682.1 2859860 D 321314 CDS YP_217683.1 62181266 complement(2861269..2861583) 1 NC_006905.1 hypothetical protein 2861583 321314003021 SC2696 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217683.1 2861269 R 321314 CDS YP_217684.1 62181267 2861671..2862009 1 NC_006905.1 IPR002197: Helix-turn-helix, Fis-type; IPR002514: Transposase, IS3/IS911family; transposase insN 2862009 insN 321314003022 insN Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase insN YP_217684.1 2861671 D 321314 CDS YP_217685.1 62181268 2862036..2862875 1 NC_006905.1 IPR001584: Integrase, catalytic domain; hypothetical protein 2862875 insM 321314003023 insM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217685.1 2862036 D 321314 CDS YP_217686.1 62181269 2863501..2864460 1 NC_006905.1 IPR000123: RNA-directed DNA polymerase (Reverse transcriptase), msDNA; reverse transcriptase-like protein 2864460 321314003024 SC2699 Salmonella enterica subsp. enterica serovar Choleraesuis str. reverse transcriptase-like protein YP_217686.1 2863501 D 321314 CDS YP_217687.1 62181270 2864363..2865349 1 NC_006905.1 hypothetical protein 2865349 321314003025 SC2700 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217687.1 2864363 D 321314 CDS YP_217688.1 62181271 complement(2865967..2866506) 1 NC_006905.1 IPR003223: Flagellin phase1 repressor; flagellar synthesis: repressor of fliC 2866506 fljA 321314003026 fljA Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar synthesis: repressor of fliC YP_217688.1 2865967 R 321314 CDS YP_217689.1 62181272 complement(2869796..2870368) 1 NC_006905.1 H inversion: regulation of flagellar gene expression by site-specific inversion of DNA; IPR006118: Site-specific recombinase; site-specific recombinase 2870368 hin 321314003028 hin Salmonella enterica subsp. enterica serovar Choleraesuis str. site-specific recombinase YP_217689.1 2869796 R 321314 CDS YP_217690.1 62181273 2870772..2870954 1 NC_006905.1 hypothetical protein 2870954 321314003029 SC2703 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217690.1 2870772 D 321314 CDS YP_217691.1 62181274 2871059..2872174 1 NC_006905.1 IPR001993: Mitochondrial substrate carrier; glycosyl transferase family protein 2872174 iroB 321314003030 iroB Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl transferase family protein YP_217691.1 2871059 D 321314 CDS YP_217692.1 62181275 2872255..2875911 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; ABC transporter 2875911 iroC 321314003031 iroC Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter YP_217692.1 2872255 D 321314 CDS YP_217693.1 62181276 2876021..2877265 1 NC_006905.1 enterochelin esterase 2877265 iroD 321314003032 iroD Salmonella enterica subsp. enterica serovar Choleraesuis str. enterochelin esterase YP_217693.1 2876021 D 321314 CDS YP_217694.1 62181277 2877297..2878232 1 NC_006905.1 hypothetical protein 2878232 IroE 321314003033 IroE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217694.1 2877297 D 321314 CDS YP_217695.2 229037907 complement(2878274..2880448) 1 NC_006905.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 2880448 iroN 321314003034 iroN Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane receptor FepA YP_217695.2 2878274 R 321314 CDS YP_217696.1 62181279 complement(2880979..2881290) 1 NC_006905.1 inner membrane protein 2881290 321314003035 SC2709 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217696.1 2880979 R 321314 CDS YP_217697.1 62181280 complement(2881486..2882538) 1 NC_006905.1 pentapeptide repeat-containing protein 2882538 pipB 321314003036 pipB Salmonella enterica subsp. enterica serovar Choleraesuis str. pentapeptide repeat-containing protein YP_217697.1 2881486 R 321314 CDS YP_217698.1 62181281 2882610..2882948 1 NC_006905.1 hypothetical protein 2882948 321314003037 SC2711 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217698.1 2882610 D 321314 CDS YP_217699.1 62181282 2883057..2883986 1 NC_006905.1 virulence protein VirK 2883986 virK 321314003038 virK Salmonella enterica subsp. enterica serovar Choleraesuis str. virulence protein VirK YP_217699.1 2883057 D 321314 CDS YP_217700.1 62181283 2884378..2885175 1 NC_006905.1 transcription activator 2885175 mig 321314003039 mig Salmonella enterica subsp. enterica serovar Choleraesuis str. transcription activator YP_217700.1 2884378 D 321314 CDS YP_217701.1 62181284 complement(2885896..2886909) 1 NC_006905.1 nickel transporter 2886909 nxiA 321314003040 nxiA Salmonella enterica subsp. enterica serovar Choleraesuis str. nickel transporter YP_217701.1 2885896 R 321314 CDS YP_217702.1 62181285 complement(2887042..2888508) 1 NC_006905.1 IPR001064: Beta and gamma crystallin; IPR003594: ATP-binding region, ATPase-like; IPR003660: Histidine kinase, HAMP region;IPR003661: Histidine kinase A, N-terminal;IPR004358: Bacterial sensor protein, C-terminal;IPR005467: Histidine kinase; tricarboxylic transport: regulatory protein 2888508 tctE 321314003041 tctE Salmonella enterica subsp. enterica serovar Choleraesuis str. tricarboxylic transport: regulatory protein YP_217702.1 2887042 R 321314 CDS YP_217703.1 62181286 complement(2888444..2889118) 1 NC_006905.1 IPR001789: Response regulator receiver; IPR001867: Transcriptional regulatory protein, C terminal; IPR005829: Sugar transporter superfamily; tricarboxylic transport: regulatory protein 2889118 tctD 321314003042 tctD Salmonella enterica subsp. enterica serovar Choleraesuis str. tricarboxylic transport: regulatory protein YP_217703.1 2888444 R 321314 CDS YP_217704.1 62181287 2889157..2889276 1 NC_006905.1 hypothetical protein 2889276 321314003043 SC2717 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217704.1 2889157 D 321314 CDS YP_217705.1 62181288 2889273..2890250 1 NC_006905.1 IPR005064: Uncharacterized protein family UPF0065; tricarboxylic transport 2890250 tctC 321314003044 tctC Salmonella enterica subsp. enterica serovar Choleraesuis str. tricarboxylic transport YP_217705.1 2889273 D 321314 CDS YP_217706.1 62181289 2890262..2890696 1 NC_006905.1 hypothetical protein 2890696 tctB 321314003045 tctB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217706.1 2890262 D 321314 CDS YP_217707.1 62181290 2890707..2892221 1 NC_006905.1 IPR002823: Protein of unknown function DUF112; hypothetical protein 2892221 tctA 321314003046 tctA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217707.1 2890707 D 321314 CDS YP_217708.2 162139554 2892524..2893501 1 NC_006905.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 2893501 ygaT 321314003047 ygaT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217708.2 2892524 D 321314 CDS YP_217709.1 62181292 2893527..2894795 1 NC_006905.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2894795 ygaF 321314003048 ygaF Salmonella enterica subsp. enterica serovar Choleraesuis str. hydroxyglutarate oxidase YP_217709.1 2893527 D 321314 CDS YP_217710.1 62181293 2894817..2896265 1 NC_006905.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2896265 gabD 321314003049 gabD Salmonella enterica subsp. enterica serovar Choleraesuis str. succinate-semialdehyde dehydrogenase I YP_217710.1 2894817 D 321314 CDS YP_217711.1 62181294 2896280..2897563 1 NC_006905.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2897563 gabT 321314003050 gabT Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-aminobutyrate aminotransferase YP_217711.1 2896280 D 321314 CDS YP_217712.1 62181295 2897693..2899093 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; IPR004840: Amino acid permease; IPR004841: Amino acid permease-associated region; gamma-aminobutyrate transporter 2899093 gabP 321314003051 gabP Salmonella enterica subsp. enterica serovar Choleraesuis str. gamma-aminobutyrate transporter YP_217712.1 2897693 D 321314 CDS YP_217713.1 62181296 2899135..2899812 1 NC_006905.1 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2899812 ygaE 321314003052 ygaE Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator CsiR YP_217713.1 2899135 D 321314 CDS YP_217714.1 62181297 complement(2899834..2900283) 1 NC_006905.1 IPR002482: Peptidoglycan-binding LysM; IPR007055: Transport-associated domain; LysM domain/BON superfamily protein 2900283 ygaU 321314003053 ygaU Salmonella enterica subsp. enterica serovar Choleraesuis str. LysM domain/BON superfamily protein YP_217714.1 2899834 R 321314 CDS YP_217715.1 62181298 complement(2900383..2900541) 1 NC_006905.1 IPR000612: Protein of unknown function UPF0057; YqaE family transport protein 2900541 yqaE 321314003054 yqaE Salmonella enterica subsp. enterica serovar Choleraesuis str. YqaE family transport protein YP_217715.1 2900383 R 321314 CDS YP_217716.1 62181299 2900724..2901023 1 NC_006905.1 IPR000485: Bacterial regulatory proteins, AsnC/Lrp; IPR001845: Bacterial regulatory protein, ArsR family; ArsR family transcriptional regulator 2901023 ygaV 321314003055 ygaV Salmonella enterica subsp. enterica serovar Choleraesuis str. ArsR family transcriptional regulator YP_217716.1 2900724 D 321314 CDS YP_217717.1 62181300 2901033..2901560 1 NC_006905.1 IPR000010: Cysteine protease inhibitor; IPR001763: Rhodanese-like; hypothetical protein 2901560 ygaP 321314003056 ygaP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217717.1 2901033 D 321314 CDS YP_217718.1 62181301 2901639..2901818 1 NC_006905.1 hypothetical protein 2901818 321314003057 SC2731 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217718.1 2901639 D 321314 CDS YP_217719.1 62181302 complement(2901908..2902309) 1 NC_006905.1 IPR001801: Histone-like nucleoid-structuring protein H-NS; DNA binding protein 2902309 stpA 321314003058 stpA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA binding protein YP_217719.1 2901908 R 321314 CDS YP_217720.1 62181303 2903008..2903457 1 NC_006905.1 hypothetical protein 2903457 ygaW 321314003059 ygaW Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217720.1 2903008 D 321314 CDS YP_217721.1 62181304 complement(2903492..2903842) 1 NC_006905.1 hypothetical protein 2903842 ygaC 321314003060 ygaC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217721.1 2903492 R 321314 CDS YP_217722.1 62181305 2904004..2904330 1 NC_006905.1 hypothetical protein 2904330 ygaM 321314003061 ygaM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217722.1 2904004 D 321314 CDS YP_217723.1 62181306 complement(2904414..2905748) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 2905748 mocR 321314003062 mocR Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_217723.1 2904414 R 321314 CDS YP_217724.1 62181307 2905837..2906268 1 NC_006905.1 IPR003779: Carboxymuconolactone decarboxylase; IPR004675: Alkylhydroperoxidase AhpD core domain; hypothetical protein 2906268 ynjA 321314003063 ynjA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217724.1 2905837 D 321314 CDS YP_217725.1 62181308 2906265..2906441 1 NC_006905.1 hypothetical protein 2906441 321314003064 SC2738 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217725.1 2906265 D 321314 CDS YP_217726.1 62181309 2906525..2906785 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; glutaredoxin-like protein 2906785 nrdH 321314003065 nrdH Salmonella enterica subsp. enterica serovar Choleraesuis str. glutaredoxin-like protein YP_217726.1 2906525 D 321314 CDS YP_217727.1 62181310 2906782..2907192 1 NC_006905.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2907192 nrdI 321314003066 nrdI Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonucleotide reductase stimulatory protein YP_217727.1 2906782 D 321314 CDS YP_217728.1 62181311 2907165..2909309 1 NC_006905.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2909309 nrdE 321314003067 nrdE Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonucleotide-diphosphate reductase subunit alpha YP_217728.1 2907165 D 321314 CDS YP_217729.1 62181312 2909320..2910279 1 NC_006905.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2910279 nrdF 321314003068 nrdF Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonucleotide-diphosphate reductase subunit beta YP_217729.1 2909320 D 321314 CDS YP_217730.1 62181313 2910635..2911837 1 NC_006905.1 with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2911837 proV 321314003069 proV Salmonella enterica subsp. enterica serovar Choleraesuis str. glycine betaine transporter ATP-binding subunit YP_217730.1 2910635 D 321314 CDS YP_217731.1 62181314 2911830..2912894 1 NC_006905.1 with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2912894 proW 321314003070 proW Salmonella enterica subsp. enterica serovar Choleraesuis str. glycine betaine transporter membrane protein YP_217731.1 2911830 D 321314 CDS YP_217732.1 62181315 2912964..2913959 1 NC_006905.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2913959 proX 321314003071 proX Salmonella enterica subsp. enterica serovar Choleraesuis str. glycine betaine transporter periplasmic subunit YP_217732.1 2912964 D 321314 CDS YP_217733.1 62181316 2914124..2915308 1 NC_006905.1 IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; inner membrane protein 2915308 ygaY 321314003072 ygaY Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217733.1 2914124 D 321314 CDS YP_217734.1 62181317 2915805..2916335 1 NC_006905.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2916335 emrR 321314003073 emrR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional repressor MprA YP_217734.1 2915805 D 321314 CDS YP_217735.1 62181318 2916435..2917634 1 NC_006905.1 IPR005694: Efflux pump membrane protein Emr; IPR006143: Secretion protein HlyD; multidrug resistance secretion protein 2917634 emrA 321314003074 emrA Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug resistance secretion protein YP_217735.1 2916435 D 321314 CDS YP_217736.1 62181319 2917651..2919189 1 NC_006905.1 IPR004638: Drug resistance transporter EmrB/QacA subfamily; IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; MFS superfamily, multidrug transport protein 2919189 emrB 321314003075 emrB Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS superfamily, multidrug transport protein YP_217736.1 2917651 D 321314 CDS YP_217737.1 62181320 complement(2919238..2920608) 1 NC_006905.1 glycoporin 2920608 321314003076 SC2750 Salmonella enterica subsp. enterica serovar Choleraesuis str. glycoporin YP_217737.1 2919238 R 321314 CDS YP_217738.1 62181321 2920753..2920896 1 NC_006905.1 hypothetical protein 2920896 321314003077 SC2751 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217738.1 2920753 D 321314 CDS YP_217739.1 62181322 complement(2920954..2921469) 1 NC_006905.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 2921469 luxS 321314003078 luxS Salmonella enterica subsp. enterica serovar Choleraesuis str. S-ribosylhomocysteinase YP_217739.1 2920954 R 321314 CDS YP_217740.1 62181323 complement(2921619..2923175) 1 NC_006905.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 2923175 gshA 321314003079 gshA Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate--cysteine ligase YP_217740.1 2921619 R 321314 CDS YP_217741.1 62181324 complement(2923252..2923677) 1 NC_006905.1 inner membrane protein 2923677 yqaA 321314003080 yqaA Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217741.1 2923252 R 321314 CDS YP_217742.1 62181325 complement(2923674..2924240) 1 NC_006905.1 YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase 2924240 yqaB 321314003081 yqaB Salmonella enterica subsp. enterica serovar Choleraesuis str. fructose-1-phosphatase YP_217742.1 2923674 R 321314 CDS YP_217746.1 62181329 complement(2925362..2925547) 1 NC_006905.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 2925547 csrA 321314003087 csrA Salmonella enterica subsp. enterica serovar Choleraesuis str. carbon storage regulator YP_217746.1 2925362 R 321314 CDS YP_217747.1 62181330 complement(2925783..2928413) 1 NC_006905.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2928413 alaS 321314003088 alaS Salmonella enterica subsp. enterica serovar Choleraesuis str. alanyl-tRNA synthetase YP_217747.1 2925783 R 321314 CDS YP_217748.1 62181331 complement(2928649..2929149) 1 NC_006905.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2929149 recX 321314003089 recX Salmonella enterica subsp. enterica serovar Choleraesuis str. recombination regulator RecX YP_217748.1 2928649 R 321314 CDS YP_217749.1 62181332 complement(2929266..2930327) 1 NC_006905.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2930327 recA 321314003090 recA Salmonella enterica subsp. enterica serovar Choleraesuis str. recombinase A YP_217749.1 2929266 R 321314 CDS YP_217750.1 62181333 complement(2930412..2930909) 1 NC_006905.1 IPR008136: CinA, C-terminal; competence damage-inducible protein A 2930909 ygaD 321314003091 ygaD Salmonella enterica subsp. enterica serovar Choleraesuis str. competence damage-inducible protein A YP_217750.1 2930412 R 321314 CDS YP_217751.1 62181334 complement(2931388..2932515) 1 NC_006905.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 2932515 mltB 321314003092 mltB Salmonella enterica subsp. enterica serovar Choleraesuis str. murein hydrolase B YP_217751.1 2931388 R 321314 CDS YP_217752.1 62181335 2932721..2933284 1 NC_006905.1 IPR004699: PTS system enzyme II sorbitol-specific factor; PTS family, glucitol/sorbitol-specific enzyme IIC component,one of two IIC components 2933284 srlA 321314003093 srlA Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS family, glucitol/sorbitol-specific enzyme IIC component,one of two IIC components YP_217752.1 2932721 D 321314 CDS YP_217753.1 62181336 2933281..2934252 1 NC_006905.1 IPR000719: Protein kinase; IPR004702: Sorbitol phosphotransferase enzyme II; PTS family, glucitol/sorbitol-specific IIB component, one of two IIC components 2934252 srlE 321314003094 srlE Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS family, glucitol/sorbitol-specific IIB component, one of two IIC components YP_217753.1 2933281 D 321314 CDS YP_217754.1 62181337 2934264..2934626 1 NC_006905.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 2934626 slrB 321314003095 slrB Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system glucitol/sorbitol-specific transporter subunit IIA YP_217754.1 2934264 D 321314 CDS YP_217755.1 62181338 2934638..2935417 1 NC_006905.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 2935417 srlD 321314003096 srlD Salmonella enterica subsp. enterica serovar Choleraesuis str. sorbitol-6-phosphate dehydrogenase YP_217755.1 2934638 D 321314 CDS YP_217756.1 62181339 2935493..2935852 1 NC_006905.1 regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2935852 gutM 321314003097 gutM Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator GutM YP_217756.1 2935493 D 321314 CDS YP_217757.1 62181340 2936050..2936823 1 NC_006905.1 regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2936823 srlR 321314003098 srlR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional repressor SrlR YP_217757.1 2936050 D 321314 CDS YP_217758.1 62181341 2936816..2937781 1 NC_006905.1 catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 2937781 gutQ 321314003099 gutQ Salmonella enterica subsp. enterica serovar Choleraesuis str. D-arabinose 5-phosphate isomerase YP_217758.1 2936816 D 321314 CDS YP_217759.1 62181342 complement(2937786..2939300) 1 NC_006905.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 2939300 ygaA 321314003100 ygaA Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic nitric oxide reductase transcriptional regulator YP_217759.1 2937786 R 321314 CDS YP_217760.1 62181343 2939486..2940925 1 NC_006905.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2940925 norV 321314003101 norV Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic nitric oxide reductase flavorubredoxin YP_217760.1 2939486 D 321314 CDS YP_217761.1 62181344 2940922..2942055 1 NC_006905.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2942055 ygbD 321314003102 ygbD Salmonella enterica subsp. enterica serovar Choleraesuis str. nitric oxide reductase YP_217761.1 2940922 D 321314 CDS YP_217762.1 62181345 complement(2942152..2944392) 1 NC_006905.1 IPR001792: Acylphosphatase; IPR004421: Hydrogenase maturation protein HypF; IPR006070: SUA5/yciO/yrdC, N-terminal;IPR006071: SUA5/yciO/yrdC; hydrogenase maturation protein 2944392 hypF 321314003103 hypF Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase maturation protein YP_217762.1 2942152 R 321314 CDS YP_217763.1 62181346 complement(2944538..2945083) 1 NC_006905.1 involved in electron transport from formate to hydrogen; electron transport protein HydN 2945083 hydN 321314003104 hydN Salmonella enterica subsp. enterica serovar Choleraesuis str. electron transport protein HydN YP_217763.1 2944538 R 321314 CDS YP_217764.1 62181347 complement(2945284..2946093) 1 NC_006905.1 hypothetical protein 2946093 321314003105 SC2777 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217764.1 2945284 R 321314 CDS YP_217765.1 62181348 complement(2946120..2946590) 1 NC_006905.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 2946590 hycI 321314003106 hycI Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 3 maturation protease YP_217765.1 2946120 R 321314 CDS YP_217766.1 62181349 complement(2946583..2946993) 1 NC_006905.1 HycE processing protein 2946993 hycH 321314003107 hycH Salmonella enterica subsp. enterica serovar Choleraesuis str. HycE processing protein YP_217766.1 2946583 R 321314 CDS YP_217767.1 62181350 complement(2946990..2947757) 1 NC_006905.1 IPR006137: NADH ubiquinone oxidoreductase domain, 20 kDa subunit; IPR006138: NADH dehydrogenase (ubiquinone), 20 kDa subunit; hydrogenase activity 2947757 hycG 321314003108 hycG Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase activity YP_217767.1 2946990 R 321314 CDS YP_217768.1 62181351 complement(2947757..2948299) 1 NC_006905.1 electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit 2948299 hycF 321314003109 hycF Salmonella enterica subsp. enterica serovar Choleraesuis str. formate hydrogenlyase complex iron-sulfur subunit YP_217768.1 2947757 R 321314 CDS YP_217769.1 62181352 complement(2948309..2950018) 1 NC_006905.1 IPR001135: NADH-ubiquinone oxidoreductase, chain 49kDa; IPR001268: NADH dehydrogenase (ubiquinone), 30 kDa subunit; formate hydrogenlyase subunit 5 2950018 hycE 321314003110 hycE Salmonella enterica subsp. enterica serovar Choleraesuis str. formate hydrogenlyase subunit 5 YP_217769.1 2948309 R 321314 CDS YP_217770.1 62181353 complement(2950036..2950959) 1 NC_006905.1 IPR001694: Respiratory-chain NADH dehydrogenase, subunit 1; hydrogenase 3, membrane subunit (part of FHL complex) 2950959 hycD 321314003111 hycD Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 3, membrane subunit (part of FHL complex) YP_217770.1 2950036 R 321314 CDS YP_217771.1 62181354 complement(2950971..2952788) 1 NC_006905.1 catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); formate hydrogenlyase subunit 3 2952788 hycC 321314003112 hycC Salmonella enterica subsp. enterica serovar Choleraesuis str. formate hydrogenlyase subunit 3 YP_217771.1 2950971 R 321314 CDS YP_217772.1 62181355 complement(2952788..2953396) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; hydrogenase-3, iron-sulfur subunit (part of FHL complex) 2953396 hycB 321314003113 hycB Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase-3, iron-sulfur subunit (part of FHL complex) YP_217772.1 2952788 R 321314 CDS YP_217773.1 62181356 complement(2953542..2954003) 1 NC_006905.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA 2954003 hycA 321314003114 hycA Salmonella enterica subsp. enterica serovar Choleraesuis str. formate hydrogenlyase regulatory protein HycA YP_217773.1 2953542 R 321314 CDS YP_217774.1 62181357 2954213..2954569 1 NC_006905.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 2954569 hypA 321314003115 hypA Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase nickel incorporation protein YP_217774.1 2954213 D 321314 CDS YP_217775.1 62181358 2954638..2955510 1 NC_006905.1 GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 2955510 hypB 321314003116 hypB Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase nickel incorporation protein HypB YP_217775.1 2954638 D 321314 CDS YP_217776.1 62181359 2955501..2955773 1 NC_006905.1 HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase assembly chaperone 2955773 hypC 321314003117 hypC Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase assembly chaperone YP_217776.1 2955501 D 321314 CDS YP_217777.1 62181360 2955773..2956894 1 NC_006905.1 IPR002780: Hydrogenase formation HypD protein; hydrogenase expression/formation protein 2956894 hypD 321314003118 hypD Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase expression/formation protein YP_217777.1 2955773 D 321314 CDS YP_217778.1 62181361 2956891..2957901 1 NC_006905.1 IPR000728: AIR synthase related protein; hydrogenase expression/formation protein 2957901 hypE 321314003119 hypE Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase expression/formation protein YP_217778.1 2956891 D 321314 CDS YP_217779.1 62181362 2958009..2960198 1 NC_006905.1 IPR002078: Sigma-54 factor interaction domain; IPR002197: Helix-turn-helix, Fis-type; IPR003018: GAF domain;IPR003593: AAA ATPase; formate hydrogen-lyase transcriptional activator 2960198 fhlA 321314003120 fhlA Salmonella enterica subsp. enterica serovar Choleraesuis str. formate hydrogen-lyase transcriptional activator YP_217779.1 2958009 D 321314 CDS YP_217780.1 62181363 complement(2960260..2960604) 1 NC_006905.1 hypothetical protein 2960604 ygbA 321314003121 ygbA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217780.1 2960260 R 321314 CDS YP_217781.1 62181364 2960786..2961703 1 NC_006905.1 IPR006127: Periplasmic solute binding protein; IPR006128: Adhesion lipoprotein; IPR006129: Adhesin B; iron transporter: fur regulated 2961703 sitA 321314003122 sitA Salmonella enterica subsp. enterica serovar Choleraesuis str. iron transporter: fur regulated YP_217781.1 2960786 D 321314 CDS YP_217782.1 62181365 2961700..2962521 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; iron transporter: fur regulated 2962521 sitB 321314003123 sitB Salmonella enterica subsp. enterica serovar Choleraesuis str. iron transporter: fur regulated YP_217782.1 2961700 D 321314 CDS YP_217783.1 62181366 2962518..2963378 1 NC_006905.1 IPR001626: ABC transporter family 3; iron transporter: fur regulated 2963378 sitC 321314003124 sitC Salmonella enterica subsp. enterica serovar Choleraesuis str. iron transporter: fur regulated YP_217783.1 2962518 D 321314 CDS YP_217784.1 62181367 2963369..2964217 1 NC_006905.1 IPR001626: ABC transporter family 3; iron transporter: fur regulated 2964217 sitD 321314003125 sitD Salmonella enterica subsp. enterica serovar Choleraesuis str. iron transporter: fur regulated YP_217784.1 2963369 D 321314 CDS YP_217785.1 62181368 complement(2964494..2965249) 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; transcriptional regulator 2965249 sprB 321314003126 sprB Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_217785.1 2964494 R 321314 CDS YP_217786.1 62181369 complement(2965634..2966521) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 2966521 hilC 321314003127 hilC Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_217786.1 2965634 R 321314 CDS YP_217787.1 62181370 complement(2966866..2967318) 1 NC_006905.1 hypothetical protein 2967318 321314003128 SC2800 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217787.1 2966866 R 321314 CDS YP_217788.1 62181371 complement(2967315..2967995) 1 NC_006905.1 flagellar biosynthesis/type III secretory pathway protein 2967995 orgB 321314003129 orgB Salmonella enterica subsp. enterica serovar Choleraesuis str. flagellar biosynthesis/type III secretory pathway protein YP_217788.1 2967315 R 321314 CDS YP_217789.1 62181372 complement(2967952..2968530) 1 NC_006905.1 inner membrane protein 2968530 orgA 321314003130 orgA Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217789.1 2967952 R 321314 CDS YP_217790.1 62181373 complement(2968523..2969281) 1 NC_006905.1 IPR003282: Type III secretion system outer membrane K protein; IPR006182: Secretory protein YscJ/FliF; cell invasion protein 2969281 prgK 321314003131 prgK Salmonella enterica subsp. enterica serovar Choleraesuis str. cell invasion protein YP_217790.1 2968523 R 321314 CDS YP_217791.1 62181374 complement(2969278..2969583) 1 NC_006905.1 cell invasion protein 2969583 prgJ 321314003132 prgJ Salmonella enterica subsp. enterica serovar Choleraesuis str. cell invasion protein YP_217791.1 2969278 R 321314 CDS YP_217792.1 62181375 complement(2969602..2969844) 1 NC_006905.1 cell invasion protein 2969844 prgI 321314003133 prgI Salmonella enterica subsp. enterica serovar Choleraesuis str. cell invasion protein YP_217792.1 2969602 R 321314 CDS YP_217793.1 62181376 complement(2969869..2971104) 1 NC_006905.1 cell invasion protein 2971104 prgH 321314003134 prgH Salmonella enterica subsp. enterica serovar Choleraesuis str. cell invasion protein YP_217793.1 2969869 R 321314 CDS YP_217794.1 62181377 2971363..2972292 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; regulatory protein 2972292 hilD 321314003135 hilD Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein YP_217794.1 2971363 D 321314 CDS YP_217795.1 62181378 2973384..2975045 1 NC_006905.1 Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 2975045 hilA 321314003136 hilA Salmonella enterica subsp. enterica serovar Choleraesuis str. invasion protein regulator YP_217795.1 2973384 D 321314 CDS YP_217796.1 62181379 2975063..2975545 1 NC_006905.1 IPR008258: SLT domain; cell invasion protein 2975545 iagB 321314003137 iagB Salmonella enterica subsp. enterica serovar Choleraesuis str. cell invasion protein YP_217796.1 2975063 D 321314 CDS YP_217797.1 62181380 complement(2975599..2977230) 1 NC_006905.1 IPR000242: Tyrosine specific protein phosphatase; IPR000387: Tyrosine specific protein phosphatase and dual specificity protein phosphatase; IPR003537: Yersinia virulence determinant YopE;IPR003546: Salmonella/Yersinia modular tyrosine phosphatase;IPR003595: Protein tyrosine phosphatase, catalytic region; protein tyrosine phosphate 2977230 sptP 321314003138 sptP Salmonella enterica subsp. enterica serovar Choleraesuis str. protein tyrosine phosphate YP_217797.1 2975599 R 321314 CDS YP_217798.1 62181381 complement(2977217..2977567) 1 NC_006905.1 virulence associated chaperone 2977567 sicP 321314003139 sicP Salmonella enterica subsp. enterica serovar Choleraesuis str. virulence associated chaperone YP_217798.1 2977217 R 321314 CDS YP_217799.1 62181382 complement(2977636..2977896) 1 NC_006905.1 hypothetical protein 2977896 321314003140 SC2812 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217799.1 2977636 R 321314 CDS YP_217800.1 62181383 complement(2977940..2978188) 1 NC_006905.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2978188 iacp 321314003141 iacp Salmonella enterica subsp. enterica serovar Choleraesuis str. acyl carrier protein YP_217800.1 2977940 R 321314 CDS YP_217801.1 62181384 complement(2978207..2980264) 1 NC_006905.1 cell invasion protein 2980264 sipA 321314003142 sipA Salmonella enterica subsp. enterica serovar Choleraesuis str. cell invasion protein YP_217801.1 2978207 R 321314 CDS YP_217802.1 62181385 complement(2980283..2981314) 1 NC_006905.1 cell invasion protein 2981314 sipD 321314003143 sipD Salmonella enterica subsp. enterica serovar Choleraesuis str. cell invasion protein YP_217802.1 2980283 R 321314 CDS YP_217803.1 62181386 complement(2981385..2982614) 1 NC_006905.1 IPR005427: Salmonella/Shigella invasin protein C; cell invasion protein 2982614 sipC 321314003144 sipC Salmonella enterica subsp. enterica serovar Choleraesuis str. cell invasion protein YP_217803.1 2981385 R 321314 CDS YP_217804.1 62181387 complement(2982642..2984423) 1 NC_006905.1 IPR003895: Salmonella/Shigella invasin protein B; cell invasion protein 2984423 sipB 321314003145 sipB Salmonella enterica subsp. enterica serovar Choleraesuis str. cell invasion protein YP_217804.1 2982642 R 321314 CDS YP_217805.1 62181388 complement(2984426..2984923) 1 NC_006905.1 IPR005415: Gram-negative bacterial type III secretion SycD chaperone; surface presentation of antigens; secretory proteins 2984923 sicA 321314003146 sicA Salmonella enterica subsp. enterica serovar Choleraesuis str. surface presentation of antigens; secretory proteins YP_217805.1 2984426 R 321314 CDS YP_217806.1 62181389 complement(2985061..2986131) 1 NC_006905.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS 2986131 spaS 321314003147 spaS Salmonella enterica subsp. enterica serovar Choleraesuis str. surface presentation of antigens protein SpaS YP_217806.1 2985061 R 321314 CDS YP_217807.1 62181390 complement(2986118..2986909) 1 NC_006905.1 IPR002010: Bacterial export protein, family 1; IPR006304: Type III secretion protein SpaR/YscT; surface presentation of antigens; secretory proteins 2986909 spaR 321314003148 spaR Salmonella enterica subsp. enterica serovar Choleraesuis str. surface presentation of antigens; secretory proteins YP_217807.1 2986118 R 321314 CDS YP_217808.1 62181391 complement(2986913..2987173) 1 NC_006905.1 IPR000595: Cyclic nucleotide-binding domain; IPR002191: Bacterial export protein FliQ, family 3; IPR006306: Type III secretion protein HrpO; surface presentation of antigens; secretory proteins 2987173 spaQ 321314003149 spaQ Salmonella enterica subsp. enterica serovar Choleraesuis str. surface presentation of antigens; secretory proteins YP_217808.1 2986913 R 321314 CDS YP_217809.1 62181392 complement(2987199..2987873) 1 NC_006905.1 part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP 2987873 spaP 321314003150 spaP Salmonella enterica subsp. enterica serovar Choleraesuis str. surface presentation of antigens protein SpaP YP_217809.1 2987199 R 321314 CDS YP_217810.1 62181393 complement(2987863..2988774) 1 NC_006905.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO 2988774 spaO 321314003151 spaO Salmonella enterica subsp. enterica serovar Choleraesuis str. surface presentation of antigens protein SpaO YP_217810.1 2987863 R 321314 CDS YP_217811.1 62181394 complement(2988774..2989784) 1 NC_006905.1 IPR003066: Salmonella invasion protein InvJ; surface presentation of antigens; secretory proteins 2989784 invJ 321314003152 invJ Salmonella enterica subsp. enterica serovar Choleraesuis str. surface presentation of antigens; secretory proteins YP_217811.1 2988774 R 321314 CDS YP_217812.1 62181395 complement(2989784..2990227) 1 NC_006905.1 IPR002954: Salmonella surface presentation of antigen M protein; surface presentation of antigens; secretory proteins 2990227 invI 321314003153 invI Salmonella enterica subsp. enterica serovar Choleraesuis str. surface presentation of antigens; secretory proteins YP_217812.1 2989784 R 321314 CDS YP_217813.1 62181396 complement(2990205..2991500) 1 NC_006905.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL 2991500 invC 321314003154 invC Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP synthase SpaL YP_217813.1 2990205 R 321314 CDS YP_217814.1 62181397 complement(2991497..2991904) 1 NC_006905.1 IPR003065: Invasion protein, B family; surface presentation of antigens; secretory proteins 2991904 invB 321314003155 invB Salmonella enterica subsp. enterica serovar Choleraesuis str. surface presentation of antigens; secretory proteins YP_217814.1 2991497 R 321314 CDS YP_217815.1 62181398 complement(2991928..2993985) 1 NC_006905.1 IPR001712: Bacterial type III secretion FHIPEP; IPR006302: Type III secretion protein HrcV; invasion protein 2993985 invA 321314003156 invA Salmonella enterica subsp. enterica serovar Choleraesuis str. invasion protein YP_217815.1 2991928 R 321314 CDS YP_217816.1 62181399 complement(2994010..2995128) 1 NC_006905.1 IPR003520: Salmonella/Shigella invasion protein E; invasion protein 2995128 invE 321314003157 invE Salmonella enterica subsp. enterica serovar Choleraesuis str. invasion protein YP_217816.1 2994010 R 321314 CDS YP_217817.1 62181400 complement(2995125..2996813) 1 NC_006905.1 IPR001775: Bacterial general secretion pathway protein D; IPR003522: Type III secretion system outer membrane G protein; IPR004845: Bacterial type II secretion system protein D;IPR004846: Bacterial type II and III secretion system protein;IPR005644: NolW-like; invasion protein; outer membrane 2996813 invG 321314003158 invG Salmonella enterica subsp. enterica serovar Choleraesuis str. invasion protein; outer membrane YP_217817.1 2995125 R 321314 CDS YP_217818.1 62181401 complement(2996810..2997571) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; invasion protein 2997571 invF 321314003159 invF Salmonella enterica subsp. enterica serovar Choleraesuis str. invasion protein YP_217818.1 2996810 R 321314 CDS YP_217819.1 62181402 2997916..2998359 1 NC_006905.1 IPR006830: InvH outer membrane lipoprotein; invasion protein 2998359 invH 321314003160 invH Salmonella enterica subsp. enterica serovar Choleraesuis str. invasion protein YP_217819.1 2997916 D 321314 CDS YP_217820.1 62181403 2999241..2999522 1 NC_006905.1 ABC-type transport system 2999522 321314003161 SC2833 Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC-type transport system YP_217820.1 2999241 D 321314 CDS YP_217821.1 62181404 2999519..3000046 1 NC_006905.1 IPR000182: GCN5-related N-acetyltransferase; acetyltransferase 3000046 321314003162 SC2834 Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyltransferase YP_217821.1 2999519 D 321314 CDS YP_217822.1 62181405 complement(3000119..3000295) 1 NC_006905.1 hypothetical protein 3000295 321314003163 SC2835 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217822.1 3000119 R 321314 CDS YP_217823.1 62181406 3000672..3001328 1 NC_006905.1 IPR004843: Metallo-phosphoesterase; IPR006186: Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; serine/threonine-specific protein phosphatase 2 3001328 pphB 321314003164 pphB Salmonella enterica subsp. enterica serovar Choleraesuis str. serine/threonine-specific protein phosphatase 2 YP_217823.1 3000672 D 321314 CDS YP_217824.1 62181407 complement(3001573..3002067) 1 NC_006905.1 hypothetical protein 3002067 321314003165 SC2837 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217824.1 3001573 R 321314 CDS YP_217825.1 62181408 complement(3002094..3002762) 1 NC_006905.1 hypothetical protein 3002762 321314003166 SC2838 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217825.1 3002094 R 321314 CDS YP_217826.1 62181409 complement(3003185..3003322) 1 NC_006905.1 hypothetical protein 3003322 tnpA 321314003167 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217826.1 3003185 R 321314 CDS YP_217827.1 62181410 complement(3003337..3003747) 1 NC_006905.1 hypothetical protein 3003747 321314003168 SC2840 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217827.1 3003337 R 321314 CDS YP_217828.1 62181411 3003905..3006472 1 NC_006905.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3006472 mutS 321314003169 mutS Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA mismatch repair protein MutS YP_217828.1 3003905 D 321314 CDS YP_217829.1 62181412 complement(3006528..3006908) 1 NC_006905.1 hypothetical protein 3006908 321314003170 SC2842 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217829.1 3006528 R 321314 CDS YP_217830.1 62181413 complement(3009168..3010664) 1 NC_006905.1 IPR003474: Gluconate transporter; permease 3010664 321314003173 SC2843 Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_217830.1 3009168 R 321314 CDS YP_217831.1 62181414 complement(3010661..3011611) 1 NC_006905.1 nucleoside-diphosphate-sugar epimerase 3011611 321314003174 SC2844 Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleoside-diphosphate-sugar epimerase YP_217831.1 3010661 R 321314 CDS YP_217832.1 62181415 complement(3011651..3012427) 1 NC_006905.1 hypothetical protein 3012427 ygbM 321314003175 ygbM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217832.1 3011651 R 321314 CDS YP_217833.1 62181416 complement(3012432..3013070) 1 NC_006905.1 IPR001303: Class II aldolase/adducin, N-terminal; aldolase 3013070 ygbL 321314003176 ygbL Salmonella enterica subsp. enterica serovar Choleraesuis str. aldolase YP_217833.1 3012432 R 321314 CDS YP_217834.1 62181417 complement(3013067..3014329) 1 NC_006905.1 tRNA synthase 3014329 ygbK 321314003177 ygbK Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA synthase YP_217834.1 3013067 R 321314 CDS YP_217835.1 62181418 complement(3014323..3015246) 1 NC_006905.1 IPR002204: 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 3015246 ygbJ 321314003178 ygbJ Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-hydroxyisobutyrate dehydrogenase YP_217835.1 3014323 R 321314 CDS YP_217836.1 62181419 3015443..3016207 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; DeoR family transcriptional regulator 3016207 ygbI 321314003179 ygbI Salmonella enterica subsp. enterica serovar Choleraesuis str. DeoR family transcriptional regulator YP_217836.1 3015443 D 321314 CDS YP_217837.1 62181420 complement(3016226..3016630) 1 NC_006905.1 IPR000835: Bacterial regulatory protein, MarR family; transcriptional regulator 3016630 hcrR 321314003180 hcrR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_217837.1 3016226 R 321314 CDS YP_217838.1 62181421 3016801..3017394 1 NC_006905.1 IPR003382: Flavoprotein; IPR004507: Phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; flavoprotein 3017394 pad 321314003181 pad Salmonella enterica subsp. enterica serovar Choleraesuis str. flavoprotein YP_217838.1 3016801 D 321314 CDS YP_217839.1 62181422 3017394..3018821 1 NC_006905.1 IPR002830: Carboxylyase-related protein; hypothetical protein 3018821 vdcC 321314003182 vdcC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217839.1 3017394 D 321314 CDS YP_217840.1 62181423 3018832..3019086 1 NC_006905.1 hypothetical protein 3019086 321314003183 SC2853 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217840.1 3018832 D 321314 CDS YP_217841.1 62181424 complement(3019067..3019750) 1 NC_006905.1 IPR001584: Integrase, catalytic domain; integrase 3019750 int 321314003184 int Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_217841.1 3019067 R 321314 CDS YP_217842.1 62181425 complement(3019921..3020322) 1 NC_006905.1 hypothetical protein 3020322 321314003185 SC2855 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217842.1 3019921 R 321314 CDS YP_217843.1 62181426 complement(3020428..3021420) 1 NC_006905.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 3021420 rpoS 321314003186 rpoS Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA polymerase sigma factor RpoS YP_217843.1 3020428 R 321314 CDS YP_217844.1 62181427 complement(3021483..3022604) 1 NC_006905.1 outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD 3022604 nlpD 321314003187 nlpD Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein NlpD YP_217844.1 3021483 R 321314 CDS YP_217845.1 62181428 complement(3022780..3023406) 1 NC_006905.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 3023406 pcm 321314003188 pcm Salmonella enterica subsp. enterica serovar Choleraesuis str. protein-L-isoaspartate O-methyltransferase YP_217845.1 3022780 R 321314 CDS YP_217846.1 62181429 complement(3023400..3024161) 1 NC_006905.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3024161 surE 321314003189 surE Salmonella enterica subsp. enterica serovar Choleraesuis str. stationary phase survival protein SurE YP_217846.1 3023400 R 321314 CDS YP_217847.1 62181430 complement(3024142..3025191) 1 NC_006905.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 3025191 truD 321314003190 truD Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA pseudouridine synthase D YP_217847.1 3024142 R 321314 CDS YP_217848.1 62181431 complement(3025188..3025667) 1 NC_006905.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3025667 ispF 321314003191 ispF Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_217848.1 3025188 R 321314 CDS YP_217849.1 62181432 complement(3025667..3026377) 1 NC_006905.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3026377 ispD 321314003192 ispD Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_217849.1 3025667 R 321314 CDS YP_217850.1 62181433 complement(3026396..3026707) 1 NC_006905.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 3026707 ftsB 321314003193 ftsB Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein FtsB YP_217850.1 3026396 R 321314 CDS YP_217851.1 62181434 complement(3026898..3027254) 1 NC_006905.1 hypothetical protein 3027254 ygbE 321314003194 ygbE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217851.1 3026898 R 321314 CDS YP_217852.1 62181435 complement(3027272..3027877) 1 NC_006905.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 3027877 321314003195 SC2865 Salmonella enterica subsp. enterica serovar Choleraesuis str. adenylylsulfate kinase YP_217852.1 3027272 R 321314 CDS YP_217853.1 62181436 complement(3027864..3029303) 1 NC_006905.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 3029303 cysN 321314003196 cysN Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfate adenylyltransferase subunit 1 YP_217853.1 3027864 R 321314 CDS YP_217854.1 62181437 complement(3029313..3030221) 1 NC_006905.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3030221 cysD 321314003197 cysD Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfate adenylyltransferase subunit 2 YP_217854.1 3029313 R 321314 CDS YP_217855.1 62181438 3030472..3031518 1 NC_006905.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase 3031518 iap 321314003198 iap Salmonella enterica subsp. enterica serovar Choleraesuis str. alkaline phosphatase YP_217855.1 3030472 D 321314 CDS YP_217856.1 62181439 complement(3031902..3032195) 1 NC_006905.1 hypothetical protein 3032195 ygbF 321314003199 ygbF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217856.1 3031902 R 321314 CDS YP_217857.1 62181440 complement(3032195..3033115) 1 NC_006905.1 hypothetical protein 3033115 ygbT 321314003200 ygbT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217857.1 3032195 R 321314 CDS YP_217858.1 62181441 complement(3033112..3033762) 1 NC_006905.1 hypothetical protein 3033762 ygcH 321314003201 ygcH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217858.1 3033112 R 321314 CDS YP_217859.1 62181442 complement(3033744..3034490) 1 NC_006905.1 hypothetical protein 3034490 ygcI 321314003202 ygcI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217859.1 3033744 R 321314 CDS YP_217860.1 62181443 complement(3034501..3035559) 1 NC_006905.1 hypothetical protein 3035559 yghJ 321314003203 yghJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217860.1 3034501 R 321314 CDS YP_217861.1 62181444 complement(3035573..3036121) 1 NC_006905.1 transposase 3036121 tnpA 321314003204 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_217861.1 3035573 R 321314 CDS YP_217862.1 62181445 3040429..3040680 1 NC_006905.1 hypothetical protein 3040680 321314003207 SC2875 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217862.1 3040429 D 321314 CDS YP_217863.1 62181446 3040796..3041749 1 NC_006905.1 hypothetical protein 3041749 sopD 321314003208 sopD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217863.1 3040796 D 321314 CDS YP_217864.1 62181447 complement(3041837..3042571) 1 NC_006905.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3042571 cysH 321314003209 cysH Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoadenosine phosphosulfate reductase YP_217864.1 3041837 R 321314 CDS YP_217865.1 62181448 complement(3042619..3044358) 1 NC_006905.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3044358 cysI 321314003210 cysI Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfite reductase subunit beta YP_217865.1 3042619 R 321314 CDS YP_217866.1 62181449 complement(3044358..3046157) 1 NC_006905.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha 3046157 cysJ 321314003211 cysJ Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfite reductase subunit alpha YP_217866.1 3044358 R 321314 CDS YP_217867.1 62181450 3046581..3046943 1 NC_006905.1 IPR007115: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; IPR007116: 6-pyruvoyl tetrahydropterin synthase; synthase 3046943 ptpS 321314003212 ptpS Salmonella enterica subsp. enterica serovar Choleraesuis str. synthase YP_217867.1 3046581 D 321314 CDS YP_217868.1 62181451 complement(3047033..3047830) 1 NC_006905.1 IPR001279: Beta-lactamase-like; beta-lactamase family hydrolase 3047830 321314003213 SC2881 Salmonella enterica subsp. enterica serovar Choleraesuis str. beta-lactamase family hydrolase YP_217868.1 3047033 R 321314 CDS YP_217869.1 62181452 3047938..3048339 1 NC_006905.1 hypothetical protein 3048339 321314003214 SC2882 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217869.1 3047938 D 321314 CDS YP_217870.1 62181453 3048510..3049193 1 NC_006905.1 IPR001584: Integrase, catalytic domain; integrase 3049193 int 321314003215 int Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_217870.1 3048510 D 321314 CDS YP_217871.1 62181454 complement(3049995..3050666) 1 NC_006905.1 hypothetical protein 3050666 ygcF 321314003216 ygcF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217871.1 3049995 R 321314 CDS YP_217872.1 62181455 complement(3050650..3050799) 1 NC_006905.1 hypothetical protein 3050799 321314003217 SC2885 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217872.1 3050650 R 321314 CDS YP_217873.1 62181456 complement(3050802..3052100) 1 NC_006905.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3052100 eno 321314003218 eno Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphopyruvate hydratase YP_217873.1 3050802 R 321314 CDS YP_217874.1 62181457 complement(3052183..3053820) 1 NC_006905.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3053820 pyrG 321314003219 pyrG Salmonella enterica subsp. enterica serovar Choleraesuis str. CTP synthetase YP_217874.1 3052183 R 321314 CDS YP_217875.1 62181458 complement(3054048..3054848) 1 NC_006905.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 3054848 mazG 321314003220 mazG Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleoside triphosphate pyrophosphohydrolase YP_217875.1 3054048 R 321314 CDS YP_217876.1 62181459 3055456..3056043 1 NC_006905.1 IPR000259: Fimbrial protein; fimbrial subunit 3056043 stfA 321314003221 stfA Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial subunit YP_217876.1 3055456 D 321314 CDS YP_217877.1 62181460 3056123..3058822 1 NC_006905.1 IPR000015: Fimbrial biogenesis outer membrane usher protein; outer membrane usher protein 3058822 steB 321314003222 steB Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane usher protein YP_217877.1 3056123 D 321314 CDS YP_217878.1 62181461 3058835..3059608 1 NC_006905.1 IPR001829: Bacterial pili assembly chaperone; periplasmic fimbrial chaperone 3059608 stfD 321314003223 stfD Salmonella enterica subsp. enterica serovar Choleraesuis str. periplasmic fimbrial chaperone YP_217878.1 3058835 D 321314 CDS YP_217879.1 62181462 3059580..3060134 1 NC_006905.1 IPR000259: Fimbrial protein; minor fimbrial subunit 3060134 stfE 321314003224 stfE Salmonella enterica subsp. enterica serovar Choleraesuis str. minor fimbrial subunit YP_217879.1 3059580 D 321314 CDS YP_217880.1 62181463 3060134..3060619 1 NC_006905.1 IPR000259: Fimbrial protein; minor fimbrial subunit 3060619 stfF 321314003225 stfF Salmonella enterica subsp. enterica serovar Choleraesuis str. minor fimbrial subunit YP_217880.1 3060134 D 321314 CDS YP_217881.1 62181464 3060616..3061152 1 NC_006905.1 IPR000259: Fimbrial protein; fimbrial subunit 3061152 yfcP 321314003226 yfcP Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial subunit YP_217881.1 3060616 D 321314 CDS YP_217882.1 62181465 3061207..3062031 1 NC_006905.1 hypothetical protein 3062031 321314003227 SC2895 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217882.1 3061207 D 321314 CDS YP_217883.1 62181466 complement(3062588..3064822) 1 NC_006905.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 3064822 relA 321314003228 relA Salmonella enterica subsp. enterica serovar Choleraesuis str. GDP/GTP pyrophosphokinase YP_217883.1 3062588 R 321314 CDS YP_217884.1 62181467 complement(3064874..3066169) 1 NC_006905.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 3066169 rumA 321314003229 rumA Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA 5-methyluridine methyltransferase YP_217884.1 3064874 R 321314 CDS YP_217885.1 62181468 3066226..3068982 1 NC_006905.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3068982 barA 321314003230 barA Salmonella enterica subsp. enterica serovar Choleraesuis str. hybrid sensory histidine kinase BarA YP_217885.1 3066226 D 321314 CDS YP_217886.1 62181469 complement(3069026..3070168) 1 NC_006905.1 IPR004381: Conserved hypothetical protein 45; hypothetical protein 3070168 grk 321314003231 grk Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217886.1 3069026 R 321314 CDS YP_217887.1 62181470 complement(3070246..3071586) 1 NC_006905.1 IPR001354: Mandelate racemase/muconate lactonizing enzyme; d-glucarate dehydratase 3071586 gudD 321314003232 gudD Salmonella enterica subsp. enterica serovar Choleraesuis str. d-glucarate dehydratase YP_217887.1 3070246 R 321314 CDS YP_217888.1 62181471 complement(3072944..3074302) 1 NC_006905.1 IPR004744: D-galactonate transporter; IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; MFS superfamily, D-glucarate permease 3074302 gudT 321314003234 gudT Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS superfamily, D-glucarate permease YP_217888.1 3072944 R 321314 CDS YP_217889.1 62181472 3074382..3074633 1 NC_006905.1 hypothetical protein 3074633 321314003235 SC2902 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217889.1 3074382 D 321314 CDS YP_217890.1 62181473 complement(3074783..3075232) 1 NC_006905.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3075232 yqcA 321314003236 yqcA Salmonella enterica subsp. enterica serovar Choleraesuis str. flavodoxin YP_217890.1 3074783 R 321314 CDS YP_217891.1 62181474 complement(3075251..3076033) 1 NC_006905.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 3076033 yqcB 321314003237 yqcB Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA pseudouridine synthase C YP_217891.1 3075251 R 321314 CDS YP_217892.1 62181475 complement(3076033..3076419) 1 NC_006905.1 IPR007384: Protein of unknown function DUF446; hypothetical protein 3076419 yqcC 321314003238 yqcC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217892.1 3076033 R 321314 CDS YP_217893.1 62181476 complement(3076974..3077519) 1 NC_006905.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3077519 syd 321314003239 syd Salmonella enterica subsp. enterica serovar Choleraesuis str. SecY interacting protein Syd YP_217893.1 3076974 R 321314 CDS YP_217894.1 62181477 3077588..3078436 1 NC_006905.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3078436 queF 321314003240 queF Salmonella enterica subsp. enterica serovar Choleraesuis str. 7-cyano-7-deazaguanine reductase YP_217894.1 3077588 D 321314 CDS YP_217895.1 62181478 3078549..3079913 1 NC_006905.1 IPR005269: Conserved hypothetical protein 730; hypothetical protein 3079913 ygdH 321314003241 ygdH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217895.1 3078549 D 321314 CDS YP_217896.1 62181479 3080478..3081767 1 NC_006905.1 IPR002091: Aromatic amino acid permease; IPR002422: Amino acid/polyamine transporter family II; IPR004694: Serine transporter; HAAAP family, serine transport protein 3081767 sdaC 321314003242 sdaC Salmonella enterica subsp. enterica serovar Choleraesuis str. HAAAP family, serine transport protein YP_217896.1 3080478 D 321314 CDS YP_217897.1 62181480 3081826..3083193 1 NC_006905.1 IPR004644: Iron-sulfur-dependent L-serine dehydratase single chain form; IPR005130: Serine dehydratase alpha chain; IPR005131: Serine dehydratase beta chain; L-serine dehydratase 3083193 sdaB 321314003243 sdaB Salmonella enterica subsp. enterica serovar Choleraesuis str. L-serine dehydratase YP_217897.1 3081826 D 321314 CDS YP_217898.1 62181481 3083304..3084119 1 NC_006905.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3084119 xni 321314003244 xni Salmonella enterica subsp. enterica serovar Choleraesuis str. exonuclease IX YP_217898.1 3083304 D 321314 CDS YP_217899.1 62181482 complement(3084211..3085353) 1 NC_006905.1 IPR001670: Iron-containing alcohol dehydrogenase; L-1,2-propanediol oxidoreductase 3085353 fucO 321314003245 fucO Salmonella enterica subsp. enterica serovar Choleraesuis str. L-1,2-propanediol oxidoreductase YP_217899.1 3084211 R 321314 CDS YP_217900.1 62181483 complement(3085370..3086017) 1 NC_006905.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 3086017 fucA 321314003246 fucA Salmonella enterica subsp. enterica serovar Choleraesuis str. L-fuculose phosphate aldolase YP_217900.1 3085370 R 321314 CDS YP_217901.1 62181484 complement(3086171..3086338) 1 NC_006905.1 hypothetical protein 3086338 321314003247 SC2914 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217901.1 3086171 R 321314 CDS YP_217902.1 62181485 3086573..3087889 1 NC_006905.1 IPR005275: L-fucose permease; IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; L-fucose transporter 3087889 fucP 321314003248 fucP Salmonella enterica subsp. enterica serovar Choleraesuis str. L-fucose transporter YP_217902.1 3086573 D 321314 CDS YP_217903.1 62181486 3087921..3089696 1 NC_006905.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3089696 fucI 321314003249 fucI Salmonella enterica subsp. enterica serovar Choleraesuis str. L-fucose isomerase YP_217903.1 3087921 D 321314 CDS YP_217904.1 62181487 3089797..3091215 1 NC_006905.1 IPR000577: Carbohydrate kinase, FGGY; L-fuculokinase 3091215 fucK 321314003250 fucK Salmonella enterica subsp. enterica serovar Choleraesuis str. L-fuculokinase YP_217904.1 3089797 D 321314 CDS YP_217905.1 62181488 3091217..3091639 1 NC_006905.1 IPR007721: RbsD or FucU transport; fucose operon protein 3091639 fucU 321314003251 fucU Salmonella enterica subsp. enterica serovar Choleraesuis str. fucose operon protein YP_217905.1 3091217 D 321314 CDS YP_217906.1 62181489 3091697..3092407 1 NC_006905.1 regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3092407 fucR 321314003252 fucR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator FucR YP_217906.1 3091697 D 321314 CDS YP_217907.1 62181490 complement(3092466..3093566) 1 NC_006905.1 RNA 2'-O-ribose methyltransferase 3093566 ygdE 321314003253 ygdE Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA 2'-O-ribose methyltransferase YP_217907.1 3092466 R 321314 CDS YP_217908.1 62181491 complement(3093559..3093954) 1 NC_006905.1 IPR006696: Protein of unknown function DUF423; hypothetical protein 3093954 ygdD 321314003254 ygdD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217908.1 3093559 R 321314 CDS YP_217909.1 62181492 complement(3093973..3094890) 1 NC_006905.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3094890 gcvA 321314003255 gcvA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator GcvA YP_217909.1 3093973 R 321314 CDS YP_217910.1 62181493 complement(3095229..3095456) 1 NC_006905.1 lipoprotein 3095456 ygdI 321314003256 ygdI Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein YP_217910.1 3095229 R 321314 CDS YP_217911.1 62181494 3095649..3096854 1 NC_006905.1 IPR000192: Aminotransferase, class V; cysteine sulfinate desulfinase 3096854 csdA 321314003257 csdA Salmonella enterica subsp. enterica serovar Choleraesuis str. cysteine sulfinate desulfinase YP_217911.1 3095649 D 321314 CDS YP_217912.1 62181495 3096854..3097297 1 NC_006905.1 IPR003808: Protein of unknown function UPF0050; hypothetical protein 3097297 ygdK 321314003258 ygdK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217912.1 3096854 D 321314 CDS YP_217913.1 62181496 3097570..3098484 1 NC_006905.1 IPR000620: Protein of unknown function DUF6; IPR004626: RarD protein; hypothetical protein 3098484 rarD 321314003259 rarD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217913.1 3097570 D 321314 CDS YP_217914.1 62181497 complement(3098536..3099342) 1 NC_006905.1 IPR000205: NAD-binding site; IPR000594: UBA/THIF-type NAD/FAD binding fold; hypothetical protein 3099342 ygdL 321314003260 ygdL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217914.1 3098536 R 321314 CDS YP_217915.1 62181498 complement(3099452..3100549) 1 NC_006905.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 3100549 mltA 321314003261 mltA Salmonella enterica subsp. enterica serovar Choleraesuis str. murein transglycosylase A YP_217915.1 3099452 R 321314 CDS YP_217916.1 62181499 complement(3101049..3102302) 1 NC_006905.1 IPR002508: Cell wall hydrolase/autolysin; IPR006311: Twin-arginine translocation pathway signal; N-acetylmuramoyl-L-alanine amidase 3102302 amiC 321314003264 amiC Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylmuramoyl-L-alanine amidase YP_217916.1 3101049 R 321314 CDS YP_217917.1 62181500 3102535..3103866 1 NC_006905.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3103866 argA 321314003265 argA Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylglutamate synthase YP_217917.1 3102535 D 321314 CDS YP_217918.1 62181501 complement(3103969..3105804) 1 NC_006905.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 3105804 recD 321314003266 recD Salmonella enterica subsp. enterica serovar Choleraesuis str. exonuclease V subunit alpha YP_217918.1 3103969 R 321314 CDS YP_217919.1 62181502 complement(3105801..3109346) 1 NC_006905.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 3109346 recB 321314003267 recB Salmonella enterica subsp. enterica serovar Choleraesuis str. exonuclease V subunit beta YP_217919.1 3105801 R 321314 CDS YP_217920.1 62181503 complement(3109339..3112227) 1 NC_006905.1 IPR001431: Peptidase M16, insulinase-like; IPR007863: Peptidase M16 inactive; protease III 3112227 ptr 321314003268 ptr Salmonella enterica subsp. enterica serovar Choleraesuis str. protease III YP_217920.1 3109339 R 321314 CDS YP_217921.1 62181504 complement(3112405..3115776) 1 NC_006905.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 3115776 recC 321314003269 recC Salmonella enterica subsp. enterica serovar Choleraesuis str. exonuclease V subunit gamma YP_217921.1 3112405 R 321314 CDS YP_217922.1 62181505 complement(3115792..3116112) 1 NC_006905.1 IPR001120: Prokaryotic N-terminal methylation site; hypothetical protein 3116112 ppdC 321314003270 ppdC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217922.1 3115792 R 321314 CDS YP_217923.1 62181506 complement(3116097..3116504) 1 NC_006905.1 hypothetical protein 3116504 ygdB 321314003271 ygdB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217923.1 3116097 R 321314 CDS YP_217924.1 62181507 complement(3116501..3117064) 1 NC_006905.1 IPR001120: Prokaryotic N-terminal methylation site; hypothetical protein 3117064 ppdB 321314003272 ppdB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217924.1 3116501 R 321314 CDS YP_217925.1 62181508 complement(3117055..3117525) 1 NC_006905.1 IPR001120: Prokaryotic N-terminal methylation site; hypothetical protein 3117525 ppdA 321314003273 ppdA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217925.1 3117055 R 321314 CDS YP_217927.1 62181510 complement(3117710..3118504) 1 NC_006905.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3118504 thyA 321314003274 thyA Salmonella enterica subsp. enterica serovar Choleraesuis str. thymidylate synthase YP_217927.1 3117710 R 321314 CDS YP_217928.1 62181511 complement(3118511..3119386) 1 NC_006905.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3119386 lgt 321314003275 lgt Salmonella enterica subsp. enterica serovar Choleraesuis str. prolipoprotein diacylglyceryl transferase YP_217928.1 3118511 R 321314 CDS YP_217929.1 62181512 complement(3119602..3121848) 1 NC_006905.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 3121848 ptsP 321314003276 ptsP Salmonella enterica subsp. enterica serovar Choleraesuis str. fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain YP_217929.1 3119602 R 321314 CDS YP_217930.1 62181513 complement(3121861..3122391) 1 NC_006905.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3122391 ygdP 321314003277 ygdP Salmonella enterica subsp. enterica serovar Choleraesuis str. dinucleoside polyphosphate hydrolase YP_217930.1 3121861 R 321314 CDS YP_217931.1 62181514 3123074..3123769 1 NC_006905.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3123769 mutH 321314003278 mutH Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA mismatch repair protein YP_217931.1 3123074 D 321314 CDS YP_217932.1 62181515 3123951..3124664 1 NC_006905.1 IPR005496: Integral membrane protein TerC family; hypothetical protein 3124664 ygdQ 321314003279 ygdQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217932.1 3123951 D 321314 CDS YP_217933.1 62181516 3124834..3125052 1 NC_006905.1 POT family peptide transport protein 3125052 ygdR 321314003280 ygdR Salmonella enterica subsp. enterica serovar Choleraesuis str. POT family peptide transport protein YP_217933.1 3124834 D 321314 CDS YP_217934.1 62181517 3125243..3126283 1 NC_006905.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 3126283 tas 321314003281 tas Salmonella enterica subsp. enterica serovar Choleraesuis str. aldo-keto reductase YP_217934.1 3125243 D 321314 CDS YP_217935.1 62181518 complement(3126370..3127572) 1 NC_006905.1 lysophospholipid transporter LplT 3127572 ygeD 321314003282 ygeD Salmonella enterica subsp. enterica serovar Choleraesuis str. lysophospholipid transporter LplT YP_217935.1 3126370 R 321314 CDS YP_217936.1 62181519 complement(3127565..3129724) 1 NC_006905.1 Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 3129724 aas 321314003283 aas Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YP_217936.1 3127565 R 321314 CDS YP_217937.1 62181520 3130316..3131344 1 NC_006905.1 controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3131344 galR 321314003284 galR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator GalR YP_217937.1 3130316 D 321314 CDS YP_217938.1 62181521 3131265..3132377 1 NC_006905.1 IPR000843: Bacterial regulatory protein LacI, HTH motif; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; transcriptional regulator 3132377 321314003285 SC2951 Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_217938.1 3131265 D 321314 CDS YP_217939.1 62181522 complement(3132387..3133649) 1 NC_006905.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 3133649 lysA 321314003286 lysA Salmonella enterica subsp. enterica serovar Choleraesuis str. diaminopimelate decarboxylase YP_217939.1 3132387 R 321314 CDS YP_217940.1 62181523 3133767..3134702 1 NC_006905.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; LysR family transcriptional regulator 3134702 lysR 321314003287 lysR Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_217940.1 3133767 D 321314 CDS YP_217941.1 62181524 complement(3134674..3135354) 1 NC_006905.1 IPR001920: Asp/Glu racemase; IPR004380: Aspartate racemase; racemase 3135354 ygeA 321314003288 ygeA Salmonella enterica subsp. enterica serovar Choleraesuis str. racemase YP_217941.1 3134674 R 321314 CDS YP_217942.1 62181525 complement(3135494..3136912) 1 NC_006905.1 IPR003663: Sugar transporter; IPR005828: General substrate transporter; IPR005829: Sugar transporter superfamily;IPR007114: Major facilitator superfamily; major facilitator superfamily L-arabinose: proton symporter 3136912 araE 321314003289 araE Salmonella enterica subsp. enterica serovar Choleraesuis str. major facilitator superfamily L-arabinose: proton symporter YP_217942.1 3135494 R 321314 CDS YP_217943.1 62181526 complement(3137265..3138026) 1 NC_006905.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 3138026 kduD 321314003290 kduD Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-deoxy-D-gluconate 3-dehydrogenase YP_217943.1 3137265 R 321314 CDS YP_217944.1 62181527 complement(3138083..3138919) 1 NC_006905.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 3138919 kduI 321314003291 kduI Salmonella enterica subsp. enterica serovar Choleraesuis str. 5-keto-4-deoxyuronate isomerase YP_217944.1 3138083 R 321314 CDS YP_217945.2 162139553 complement(3139349..3140527) 1 NC_006905.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3140527 yqeF 321314003292 yqeF Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl-CoA acetyltransferase YP_217945.2 3139349 R 321314 CDS YP_217946.1 62181529 complement(3140650..3140997) 1 NC_006905.1 LysR family transcriptional regulator 3140997 321314003293 SC2959 Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_217946.1 3140650 R 321314 CDS YP_217947.1 62181530 3141045..3141281 1 NC_006905.1 IPR007896: Bacterial transmembrane pair; inner membrane protein 3141281 321314003294 SC2960 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_217947.1 3141045 D 321314 CDS YP_217948.1 62181531 3141423..3142652 1 NC_006905.1 IPR002091: Aromatic amino acid permease; IPR002422: Amino acid/polyamine transporter family II; transporter 3142652 yqeG 321314003295 yqeG Salmonella enterica subsp. enterica serovar Choleraesuis str. transporter YP_217948.1 3141423 D 321314 CDS YP_217949.1 62181532 complement(3142683..3142955) 1 NC_006905.1 IPR003735: Protein of unknown function DUF156; hypothetical protein 3142955 yohL 321314003296 yohL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217949.1 3142683 R 321314 CDS YP_217950.1 62181533 complement(3144154..3144912) 1 NC_006905.1 hypothetical protein 3144912 321314003298 SC2963 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217950.1 3144154 R 321314 CDS YP_217951.1 62181534 complement(3144899..3145405) 1 NC_006905.1 hypothetical protein 3145405 321314003299 SC2964 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217951.1 3144899 R 321314 CDS YP_217952.1 62181535 complement(3145512..3145694) 1 NC_006905.1 outer membrane protein 3145694 321314003300 SC2965 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_217952.1 3145512 R 321314 CDS YP_217953.1 62181536 complement(3145796..3146581) 1 NC_006905.1 hypothetical protein 3146581 321314003301 SC2966 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217953.1 3145796 R 321314 CDS YP_217954.1 62181537 complement(3146578..3147321) 1 NC_006905.1 IPR001829: Bacterial pili assembly chaperone; fimbrial chaperone protein 3147321 stdC 321314003302 stdC Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial chaperone protein YP_217954.1 3146578 R 321314 CDS YP_217955.1 62181538 complement(3147362..3149851) 1 NC_006905.1 IPR000015: Fimbrial biogenesis outer membrane usher protein; outer membrane usher protein 3149851 stdB 321314003303 stdB Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane usher protein YP_217955.1 3147362 R 321314 CDS YP_217956.1 62181539 complement(3149971..3150681) 1 NC_006905.1 IPR000259: Fimbrial protein; fimbrial-like protein 3150681 stdA 321314003304 stdA Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial-like protein YP_217956.1 3149971 R 321314 CDS YP_217957.1 62181540 complement(3151274..3151906) 1 NC_006905.1 hypothetical protein 3151906 yfdX 321314003305 yfdX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217957.1 3151274 R 321314 CDS YP_217958.1 62181541 complement(3151953..3152489) 1 NC_006905.1 IPR000758: Virulence-related outer membrane protein; hypothetical protein 3152489 pagC 321314003306 pagC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217958.1 3151953 R 321314 CDS YP_217959.1 62181542 complement(3152535..3152762) 1 NC_006905.1 hypothetical protein 3152762 321314003307 SC2972 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217959.1 3152535 R 321314 CDS YP_217960.1 62181543 complement(3153295..3153693) 1 NC_006905.1 stability determinant protein; plasmid maintenance protein 3153693 pilT 321314003308 pilT Salmonella enterica subsp. enterica serovar Choleraesuis str. plasmid maintenance protein YP_217960.1 3153295 R 321314 CDS YP_217961.1 62181544 complement(3153693..3154058) 1 NC_006905.1 IPR007159: SpoVT/AbrB-like domain; hypothetical protein 3154058 yge 321314003309 yge Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217961.1 3153693 R 321314 CDS YP_217962.1 62181545 3154129..3154380 1 NC_006905.1 hypothetical protein 3154380 321314003310 SC2975 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217962.1 3154129 D 321314 CDS YP_217963.1 62181546 3154821..3155462 1 NC_006905.1 hypothetical protein 3155462 321314003311 SC2976 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217963.1 3154821 D 321314 CDS YP_217965.1 62181548 complement(3155747..3156505) 1 NC_006905.1 IPR002482: Peptidoglycan-binding LysM; IPR002886: Peptidase M23/M37; metalloendopeptidase 3156505 ygeR 321314003313 ygeR Salmonella enterica subsp. enterica serovar Choleraesuis str. metalloendopeptidase YP_217965.1 3155747 R 321314 CDS YP_217966.1 62181549 3156770..3157315 1 NC_006905.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3157315 idi 321314003314 idi Salmonella enterica subsp. enterica serovar Choleraesuis str. isopentenyl-diphosphate delta-isomerase YP_217966.1 3156770 D 321314 CDS YP_217967.1 62181550 complement(3157391..3158908) 1 NC_006905.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3158908 lysS 321314003315 lysS Salmonella enterica subsp. enterica serovar Choleraesuis str. lysyl-tRNA synthetase YP_217967.1 3157391 R 321314 CDS YP_217968.1 62181551 complement(3158918..3159799) 1 NC_006905.1 IPR000352: Class I peptide chain release factor domain; IPR004374: Peptide chain release factor 2; IPR005139: PCRF domain; peptide chain release factor 2 3159799 prfB 321314003316 prfB Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide chain release factor 2 YP_217968.1 3158918 R 321314 CDS YP_217969.1 62181552 complement(3160121..3161854) 1 NC_006905.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 3161854 recJ 321314003317 recJ Salmonella enterica subsp. enterica serovar Choleraesuis str. ssDNA exonuclease RecJ YP_217969.1 3160121 R 321314 CDS YP_217970.1 62181553 complement(3161860..3162573) 1 NC_006905.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 3162573 dsbC 321314003318 dsbC Salmonella enterica subsp. enterica serovar Choleraesuis str. thiol:disulfide interchange protein DsbC YP_217970.1 3161860 R 321314 CDS YP_217971.1 62181554 complement(3162597..3163493) 1 NC_006905.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 3163493 xerD 321314003319 xerD Salmonella enterica subsp. enterica serovar Choleraesuis str. site-specific tyrosine recombinase XerD YP_217971.1 3162597 R 321314 CDS YP_217972.2 162139552 3163606..3164127 1 NC_006905.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 3164127 fldB 321314003320 fldB Salmonella enterica subsp. enterica serovar Choleraesuis str. flavodoxin FldB YP_217972.2 3163606 D 321314 CDS YP_217973.1 62181556 complement(3164180..3164593) 1 NC_006905.1 hypothetical protein 3164593 ygfX 321314003321 ygfX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217973.1 3164180 R 321314 CDS YP_217974.1 62181557 complement(3164574..3164840) 1 NC_006905.1 IPR005631: Protein of unknown function DUF339; hypothetical protein 3164840 ygfY 321314003322 ygfY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217974.1 3164574 R 321314 CDS YP_217975.1 62181558 3164839..3165075 1 NC_006905.1 hypothetical protein 3165075 321314003323 SC2988 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217975.1 3164839 D 321314 CDS YP_217976.1 62181559 3165090..3166070 1 NC_006905.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; global regulator 3166070 ygfZ 321314003324 ygfZ Salmonella enterica subsp. enterica serovar Choleraesuis str. global regulator YP_217976.1 3165090 D 321314 CDS YP_217977.1 62181560 complement(3166186..3166845) 1 NC_006905.1 IPR004254: Hly-III related proteins; IPR005744: HylII; hypothetical protein 3166845 yqfA 321314003325 yqfA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217977.1 3166186 R 321314 CDS YP_217978.1 62181561 complement(3167009..3167320) 1 NC_006905.1 hypothetical protein 3167320 yqfB 321314003326 yqfB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217978.1 3167009 R 321314 CDS YP_217979.1 62181562 3167478..3168911 1 NC_006905.1 IPR001360: Glycoside hydrolase, family 1; 6-phospho-beta-glucosidase 3168911 bglA 321314003327 bglA Salmonella enterica subsp. enterica serovar Choleraesuis str. 6-phospho-beta-glucosidase YP_217979.1 3167478 D 321314 CDS YP_217980.1 62181563 complement(3168959..3169852) 1 NC_006905.1 outer membrane protein 3169852 321314003328 SC2993 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_217980.1 3168959 R 321314 CDS YP_217981.2 162139551 complement(3170308..3173181) 1 NC_006905.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3173181 gcvP 321314003329 gcvP Salmonella enterica subsp. enterica serovar Choleraesuis str. glycine dehydrogenase YP_217981.2 3170308 R 321314 CDS YP_217982.1 62181565 complement(3173344..3173733) 1 NC_006905.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3173733 gcvH 321314003330 gcvH Salmonella enterica subsp. enterica serovar Choleraesuis str. glycine cleavage system protein H YP_217982.1 3173344 R 321314 CDS YP_217983.1 62181566 complement(3173759..3174853) 1 NC_006905.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3174853 gcvT 321314003331 gcvT Salmonella enterica subsp. enterica serovar Choleraesuis str. glycine cleavage system aminomethyltransferase T YP_217983.1 3173759 R 321314 CDS YP_217984.1 62181567 complement(3175308..3176510) 1 NC_006905.1 IPR000205: NAD-binding site; IPR000689: UbiH/COQ6 monooxygenase; IPR000733: Flavoprotein monooxygenase;IPR003042: Aromatic-ring hydroxylase; hypothetical protein 3176510 321314003332 SC2997 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217984.1 3175308 R 321314 CDS YP_217985.1 62181568 complement(3176633..3177811) 1 NC_006905.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 3177811 ubiH 321314003333 ubiH Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-octaprenyl-6-methoxyphenyl hydroxylase YP_217985.1 3176633 R 321314 CDS YP_217986.1 62181569 complement(3177808..3179124) 1 NC_006905.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 3179124 pepP 321314003334 pepP Salmonella enterica subsp. enterica serovar Choleraesuis str. proline aminopeptidase P II YP_217986.1 3177808 R 321314 CDS YP_217987.2 162139550 complement(3179150..3179728) 1 NC_006905.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 3179728 ygfB 321314003335 ygfB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217987.2 3179150 R 321314 CDS YP_217988.1 62181571 3179895..3180224 1 NC_006905.1 IPR007838: Protein of unknown function DUF710; Z-ring-associated protein 3180224 ygfE 321314003336 ygfE Salmonella enterica subsp. enterica serovar Choleraesuis str. Z-ring-associated protein YP_217988.1 3179895 D 321314 CDS YP_217989.2 229037906 3180519..3181067 1 NC_006905.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 3181067 ygfA 321314003337 ygfA Salmonella enterica subsp. enterica serovar Choleraesuis str. ligase YP_217989.2 3180519 D 321314 CDS YP_217990.1 62181573 complement(3181449..3182681) 1 NC_006905.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3182681 serA 321314003338 serA Salmonella enterica subsp. enterica serovar Choleraesuis str. D-3-phosphoglycerate dehydrogenase YP_217990.1 3181449 R 321314 CDS YP_217991.1 62181574 complement(3182948..3183607) 1 NC_006905.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3183607 rpiA 321314003339 rpiA Salmonella enterica subsp. enterica serovar Choleraesuis str. ribose-5-phosphate isomerase A YP_217991.1 3182948 R 321314 CDS YP_217992.1 62181575 3183761..3184654 1 NC_006905.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3184654 iciA 321314003340 iciA Salmonella enterica subsp. enterica serovar Choleraesuis str. chromosome replication initiation inhibitor protein YP_217992.1 3183761 D 321314 CDS YP_217993.1 62181576 3184666..3184917 1 NC_006905.1 hypothetical protein 3184917 321314003341 SC3006 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217993.1 3184666 D 321314 CDS YP_217994.1 62181577 complement(3184920..3185666) 1 NC_006905.1 IPR007497: Protein of unknown function DUF541; hypothetical protein 3185666 yggE 321314003342 yggE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_217994.1 3184920 R 321314 CDS YP_217995.1 62181578 complement(3185760..3186395) 1 NC_006905.1 Involved in the export of arginine; arginine exporter protein 3186395 yggA 321314003343 yggA Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine exporter protein YP_217995.1 3185760 R 321314 CDS YP_217996.1 62181579 complement(3186596..3187456) 1 NC_006905.1 participates in the regulation of osmotic pressure changes within the cel; mechanosensitive ion channel MscS 3187456 yggB 321314003344 yggB Salmonella enterica subsp. enterica serovar Choleraesuis str. mechanosensitive ion channel MscS YP_217996.1 3186596 R 321314 CDS YP_217997.2 162139549 complement(3187689..3188768) 1 NC_006905.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 3188768 fba 321314003345 fba Salmonella enterica subsp. enterica serovar Choleraesuis str. fructose-bisphosphate aldolase YP_217997.2 3187689 R 321314 CDS YP_217998.1 62181581 complement(3188870..3190033) 1 NC_006905.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3190033 pgk 321314003346 pgk Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglycerate kinase YP_217998.1 3188870 R 321314 CDS YP_217999.1 62181582 complement(3190055..3191101) 1 NC_006905.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3191101 epd 321314003347 epd Salmonella enterica subsp. enterica serovar Choleraesuis str. erythrose 4-phosphate dehydrogenase YP_217999.1 3190055 R 321314 CDS YP_218000.1 62181583 3191475..3191900 1 NC_006905.1 IPR005175: Protein of unknown function DUF296; hypothetical protein 3191900 321314003348 SC3013 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218000.1 3191475 D 321314 CDS YP_218001.1 62181584 3191926..3192504 1 NC_006905.1 hypothetical protein 3192504 321314003349 SC3014 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218001.1 3191926 D 321314 CDS YP_218002.1 62181585 3192505..3193212 1 NC_006905.1 hypothetical protein 3193212 321314003350 SC3015 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218002.1 3192505 D 321314 CDS YP_218003.1 62181586 3193200..3193877 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; cobalt ABC transporter ATPase 3193877 cbiO 321314003351 cbiO Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalt ABC transporter ATPase YP_218003.1 3193200 D 321314 CDS YP_218004.1 62181587 3193826..3194527 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; cobalt ABC transporter ATPase 3194527 cysA 321314003352 cysA Salmonella enterica subsp. enterica serovar Choleraesuis str. cobalt ABC transporter ATPase YP_218004.1 3193826 D 321314 CDS YP_218005.1 62181588 complement(3194571..3196562) 1 NC_006905.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3196562 tktA 321314003353 tktA Salmonella enterica subsp. enterica serovar Choleraesuis str. transketolase YP_218005.1 3194571 R 321314 CDS YP_218006.1 62181589 3196838..3197596 1 NC_006905.1 IPR001915: Peptidase M48; Zn-dependent protease with chaperone function 3197596 yggG 321314003354 yggG Salmonella enterica subsp. enterica serovar Choleraesuis str. Zn-dependent protease with chaperone function YP_218006.1 3196838 D 321314 CDS YP_218007.1 62181590 complement(3197697..3198617) 1 NC_006905.1 catalyzes the formation of putrescine from agmatine; agmatinase 3198617 speB 321314003355 speB Salmonella enterica subsp. enterica serovar Choleraesuis str. agmatinase YP_218007.1 3197697 R 321314 CDS YP_218008.1 62181591 complement(3201329..3201802) 1 NC_006905.1 IPR004375: Conserved hypothetical protein 22; mannitol dehydrogenase 3201802 yhcH 321314003357 yhcH Salmonella enterica subsp. enterica serovar Choleraesuis str. mannitol dehydrogenase YP_218008.1 3201329 R 321314 CDS YP_218009.1 62181592 complement(3201841..3202848) 1 NC_006905.1 IPR003767: Malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase 3202848 yjmC 321314003358 yjmC Salmonella enterica subsp. enterica serovar Choleraesuis str. malate/L-lactate dehydrogenase YP_218009.1 3201841 R 321314 CDS YP_218010.1 62181593 complement(3202862..3203878) 1 NC_006905.1 IPR000205: NAD-binding site; IPR002085: Zinc-containing alcohol dehydrogenase superfamily; IPR002328: Zinc-containing alcohol dehydrogenase; zinc-binding dehydrogenase 3203878 yjjN 321314003359 yjjN Salmonella enterica subsp. enterica serovar Choleraesuis str. zinc-binding dehydrogenase YP_218010.1 3202862 R 321314 CDS YP_218011.1 62181594 complement(3206586..3207386) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 3207386 uxuR 321314003361 uxuR Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_218011.1 3206586 R 321314 CDS YP_218012.1 62181595 complement(3207540..3208271) 1 NC_006905.1 outer membrane lipoprotein 3208271 321314003362 SC3025 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_218012.1 3207540 R 321314 CDS YP_218013.1 62181596 complement(3208416..3210314) 1 NC_006905.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 3210314 speA 321314003363 speA Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine decarboxylase YP_218013.1 3208416 R 321314 CDS YP_218014.1 62181597 complement(3210401..3210532) 1 NC_006905.1 hypothetical protein 3210532 yqgB 321314003364 yqgB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218014.1 3210401 R 321314 CDS YP_218015.1 62181598 3210666..3210830 1 NC_006905.1 hypothetical protein 3210830 yqgC 321314003365 yqgC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218015.1 3210666 D 321314 CDS YP_218016.1 62181599 complement(3210827..3211126) 1 NC_006905.1 inner membrane protein 3211126 yqgD 321314003366 yqgD Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218016.1 3210827 R 321314 CDS YP_218017.1 62181600 3211182..3212336 1 NC_006905.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3212336 metK 321314003367 metK Salmonella enterica subsp. enterica serovar Choleraesuis str. S-adenosylmethionine synthetase YP_218017.1 3211182 D 321314 CDS YP_218018.1 62181601 3212829..3214223 1 NC_006905.1 IPR003663: Sugar transporter; IPR005828: General substrate transporter; IPR005829: Sugar transporter superfamily;IPR007114: Major facilitator superfamily; major facilitator superfamily galactose:proton symporter 3214223 galP 321314003368 galP Salmonella enterica subsp. enterica serovar Choleraesuis str. major facilitator superfamily galactose:proton symporter YP_218018.1 3212829 D 321314 CDS YP_218019.1 62181602 3214302..3214799 1 NC_006905.1 IPR005622: metallopeptidase (SprT family); IPR006025: Neutral zinc metallopeptidases, zinc-binding site; IPR006640: SprT; hypothetical protein 3214799 sprT 321314003369 sprT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218019.1 3214302 D 321314 CDS YP_218020.1 62181603 3214895..3215602 1 NC_006905.1 IPR007346: Endonuclease I; DNA-specific endonuclease I 3215602 endA 321314003370 endA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-specific endonuclease I YP_218020.1 3214895 D 321314 CDS YP_218021.2 162139548 3215679..3216410 1 NC_006905.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3216410 yggJ 321314003371 yggJ Salmonella enterica subsp. enterica serovar Choleraesuis str. 16S ribosomal RNA methyltransferase RsmE YP_218021.2 3215679 D 321314 CDS YP_218022.1 62181605 3216430..3217377 1 NC_006905.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3217377 gshB 321314003372 gshB Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione synthetase YP_218022.1 3216430 D 321314 CDS YP_218023.2 162139547 3217593..3218156 1 NC_006905.1 IPR003774: Protein of unknown function DUF179; hypothetical protein 3218156 yqgE 321314003373 yqgE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218023.2 3217593 D 321314 CDS YP_218024.1 62181607 3218156..3218572 1 NC_006905.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3218572 yqgF 321314003374 yqgF Salmonella enterica subsp. enterica serovar Choleraesuis str. Holliday junction resolvase-like protein YP_218024.1 3218156 D 321314 CDS YP_218025.1 62181608 complement(3218619..3219335) 1 NC_006905.1 IPR005471: Bacterial regulatory proteins, IclR family; transcriptional regulator 3219335 321314003375 SC3038 Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_218025.1 3218619 R 321314 CDS YP_218026.1 62181609 complement(3219437..3220417) 1 NC_006905.1 IPR001482: Bacterial type II secretion system protein E; IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003593: AAA ATPase;IPR006321: Pilus retraction protein PilT; protein transport 3220417 yggR 321314003376 yggR Salmonella enterica subsp. enterica serovar Choleraesuis str. protein transport YP_218026.1 3219437 R 321314 CDS YP_218027.1 62181610 3220435..3221139 1 NC_006905.1 IPR001608: Protein of unknown function UPF0001; hypothetical protein 3221139 yggS 321314003377 yggS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218027.1 3220435 D 321314 CDS YP_218028.1 62181611 3221158..3221724 1 NC_006905.1 IPR003425: Protein of unknown function YGGT; hypothetical protein 3221724 yggT 321314003378 yggT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218028.1 3221158 D 321314 CDS YP_218029.2 162139546 3221721..3222011 1 NC_006905.1 IPR003746: Protein of unknown function DUF167; IPR005228: Conserved hypothetical protein 251; hypothetical protein 3222011 yggU 321314003379 yggU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218029.2 3221721 D 321314 CDS YP_218030.1 62181613 3222019..3222612 1 NC_006905.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3222612 yggV 321314003380 yggV Salmonella enterica subsp. enterica serovar Choleraesuis str. deoxyribonucleotide triphosphate pyrophosphatase YP_218030.1 3222019 D 321314 CDS YP_218031.1 62181614 3222566..3223741 1 NC_006905.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3223741 yggW 321314003381 yggW Salmonella enterica subsp. enterica serovar Choleraesuis str. coproporphyrinogen III oxidase YP_218031.1 3222566 D 321314 CDS YP_218032.1 62181615 complement(3223833..3224840) 1 NC_006905.1 hypothetical protein 3224840 yggM 321314003382 yggM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218032.1 3223833 R 321314 CDS YP_218033.1 62181616 complement(3224973..3226019) 1 NC_006905.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II 3226019 ansB 321314003383 ansB Salmonella enterica subsp. enterica serovar Choleraesuis str. L-asparaginase II YP_218033.1 3224973 R 321314 CDS YP_218034.1 62181617 complement(3226038..3226190) 1 NC_006905.1 hypothetical protein 3226190 321314003384 SC3047 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218034.1 3226038 R 321314 CDS YP_218035.1 62181618 complement(3226208..3226927) 1 NC_006905.1 hypothetical protein 3226927 yggN 321314003385 yggN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218035.1 3226208 R 321314 CDS YP_218036.1 62181619 complement(3226977..3227303) 1 NC_006905.1 IPR007416: Protein with unknown function DUF469; hypothetical protein 3227303 yggL 321314003386 yggL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218036.1 3226977 R 321314 CDS YP_218037.1 62181620 complement(3227303..3228022) 1 NC_006905.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3228022 trmB 321314003387 trmB Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA (guanine-N(7)-)-methyltransferase YP_218037.1 3227303 R 321314 CDS YP_218038.1 62181621 3228177..3229229 1 NC_006905.1 IPR000445: Helix-hairpin-helix motif; IPR003265: HhH-GPD; IPR003651: Iron-sulfur cluster loop;IPR004035: Endonuclease III, FCL;IPR004036: Endonuclease III, HhH;IPR005760: A/G-specific adenine glycosylase MutY; adenine DNA glycosylase 3229229 mutY 321314003388 mutY Salmonella enterica subsp. enterica serovar Choleraesuis str. adenine DNA glycosylase YP_218038.1 3228177 D 321314 CDS YP_218039.1 62181622 3229257..3229532 1 NC_006905.1 IPR007457: Protein of unknown function DUF495; hypothetical protein 3229532 yggX 321314003389 yggX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218039.1 3229257 D 321314 CDS YP_218040.1 62181623 3229645..3230730 1 NC_006905.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 3230730 mltC 321314003390 mltC Salmonella enterica subsp. enterica serovar Choleraesuis str. murein transglycosylase C YP_218040.1 3229645 D 321314 CDS YP_218041.1 62181624 3230947..3232203 1 NC_006905.1 IPR004740: Nucleoside:H+ symporter; IPR007114: Major facilitator superfamily; major facilitator superfamily nucleoside transporter 3232203 nupG 321314003391 nupG Salmonella enterica subsp. enterica serovar Choleraesuis str. major facilitator superfamily nucleoside transporter YP_218041.1 3230947 D 321314 CDS YP_218042.2 162139545 complement(3232265..3234400) 1 NC_006905.1 IPR000310: Orn/Lys/Arg decarboxylase, major region; IPR005308: Orn/Lys/Arg decarboxylase, N-terminal domain; IPR008286: Orn/Lys/Arg decarboxylase, C-terminal; ornithine decarboxylase 3234400 speC 321314003392 speC Salmonella enterica subsp. enterica serovar Choleraesuis str. ornithine decarboxylase YP_218042.2 3232265 R 321314 CDS YP_218043.1 62181626 3234820..3235527 1 NC_006905.1 IPR007563: Protein of unknown function DUF554; hypothetical protein 3235527 yqgA 321314003393 yqgA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218043.1 3234820 D 321314 CDS YP_218044.1 62181627 complement(3235867..3236301) 1 NC_006905.1 IPR004360: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; lactoylglutathione lyase 3236301 agl 321314003395 agl Salmonella enterica subsp. enterica serovar Choleraesuis str. lactoylglutathione lyase YP_218044.1 3235867 R 321314 CDS YP_218045.1 62181628 complement(3236312..3237637) 1 NC_006905.1 IPR003702: Acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase 3237637 ach 321314003396 ach Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl-CoA hydrolase YP_218045.1 3236312 R 321314 CDS YP_218046.1 62181629 complement(3237662..3238189) 1 NC_006905.1 IPR002539: MaoC-like dehydratase; monoamine oxidase 3238189 maoC 321314003397 maoC Salmonella enterica subsp. enterica serovar Choleraesuis str. monoamine oxidase YP_218046.1 3237662 R 321314 CDS YP_218047.1 62181630 complement(3238213..3239055) 1 NC_006905.1 IPR001064: Beta and gamma crystallin; LysR family transcriptional regulator 3239055 cilB 321314003398 cilB Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_218047.1 3238213 R 321314 CDS YP_218048.1 62181631 3239147..3240025 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; LysR family transcriptional regulator 3240025 stmR 321314003399 stmR Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_218048.1 3239147 D 321314 CDS YP_218049.1 62181632 complement(3240073..3241812) 1 NC_006905.1 IPR000917: Sulfatase; arylsulfatase 3241812 ars 321314003400 ars Salmonella enterica subsp. enterica serovar Choleraesuis str. arylsulfatase YP_218049.1 3240073 R 321314 CDS YP_218050.1 62181633 complement(3241881..3243065) 1 NC_006905.1 IPR007197: Radical SAM; arylsulfatase regulator 3243065 arsR 321314003401 arsR Salmonella enterica subsp. enterica serovar Choleraesuis str. arylsulfatase regulator YP_218050.1 3241881 R 321314 CDS YP_218051.1 62181634 3243577..3244260 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; response regulator 3244260 moaR 321314003402 moaR Salmonella enterica subsp. enterica serovar Choleraesuis str. response regulator YP_218051.1 3243577 D 321314 CDS YP_218052.1 62181635 complement(3244365..3244922) 1 NC_006905.1 hypothetical protein 3244922 321314003403 SC3065 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218052.1 3244365 R 321314 CDS YP_218053.1 62181636 complement(3244900..3246399) 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; IPR004841: Amino acid permease-associated region; amino acid transporter 3246399 321314003404 SC3066 Salmonella enterica subsp. enterica serovar Choleraesuis str. amino acid transporter YP_218053.1 3244900 R 321314 CDS YP_218054.1 62181637 complement(3246608..3246982) 1 NC_006905.1 IPR007113: Cupin domain; IPR008579: Protein of unknown function DUF861; hypothetical protein 3246982 321314003405 SC3067 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218054.1 3246608 R 321314 CDS YP_218055.1 62181638 complement(3246997..3248298) 1 NC_006905.1 IPR000205: NAD-binding site; IPR000408: Regulator of chromosome condensation, RCC1; oxidoreductase 3248298 ordL 321314003406 ordL Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_218055.1 3246997 R 321314 CDS YP_218056.1 62181639 3248460..3249944 1 NC_006905.1 IPR002086: Aldehyde dehydrogenase; NAD-dependent aldehyde dehydrogenase 3249944 feaB 321314003407 feaB Salmonella enterica subsp. enterica serovar Choleraesuis str. NAD-dependent aldehyde dehydrogenase YP_218056.1 3248460 D 321314 CDS YP_218057.1 62181640 complement(3250080..3250460) 1 NC_006905.1 inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein 3250460 iraD 321314003408 iraD Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA replication/recombination/repair protein YP_218057.1 3250080 R 321314 CDS YP_218058.1 62181641 complement(3250460..3250945) 1 NC_006905.1 IPR008514: Protein of unknown function DUF796; hypothetical protein 3250945 321314003409 SC3071 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218058.1 3250460 R 321314 CDS YP_218059.1 62181642 3251238..3251393 1 NC_006905.1 hypothetical protein 3251393 321314003410 SC3072 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218059.1 3251238 D 321314 CDS YP_218060.1 62181643 complement(3251654..3252577) 1 NC_006905.1 IPR002509: Polysaccharide deacetylase; hypothetical protein 3252577 xcd 321314003411 xcd Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218060.1 3251654 R 321314 CDS YP_218061.1 62181644 complement(3252616..3253494) 1 NC_006905.1 IPR000276: Rhodopsin-like GPCR superfamily; IPR003010: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; amidohydrolase 3253494 yhcX 321314003412 yhcX Salmonella enterica subsp. enterica serovar Choleraesuis str. amidohydrolase YP_218061.1 3252616 R 321314 CDS YP_218062.1 62181645 complement(3253889..3255193) 1 NC_006905.1 IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; permease 3255193 exuT 321314003413 exuT Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_218062.1 3253889 R 321314 CDS YP_218063.1 62181646 3255553..3256782 1 NC_006905.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3256782 uxuA 321314003414 uxuA Salmonella enterica subsp. enterica serovar Choleraesuis str. mannonate dehydratase YP_218063.1 3255553 D 321314 CDS YP_218064.1 62181647 3256893..3258365 1 NC_006905.1 IPR000669: Mannitol dehydrogenase; IPR001993: Mitochondrial substrate carrier; D-mannonate oxidoreductase 3258365 uxuB 321314003415 uxuB Salmonella enterica subsp. enterica serovar Choleraesuis str. D-mannonate oxidoreductase YP_218064.1 3256893 D 321314 CDS YP_218065.1 62181648 3258377..3259789 1 NC_006905.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3259789 uxaC 321314003416 uxaC Salmonella enterica subsp. enterica serovar Choleraesuis str. glucuronate isomerase YP_218065.1 3258377 D 321314 CDS YP_218066.1 62181649 complement(3260089..3261144) 1 NC_006905.1 IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein; hypothetical protein 3261144 mac 321314003417 mac Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218066.1 3260089 R 321314 CDS YP_218067.1 62181650 complement(3261814..3263670) 1 NC_006905.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3263670 gsp 321314003418 gsp Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_218067.1 3261814 R 321314 CDS YP_218068.1 62181651 3263897..3264763 1 NC_006905.1 YghU; B2989; one of eight glutathione transferases from E. coli; glutathione S-transferase 3264763 yghU 321314003419 yghU Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione S-transferase YP_218068.1 3263897 D 321314 CDS YP_218069.1 62181652 complement(3264831..3265484) 1 NC_006905.1 molybdate ABC transporter periplasmic molybdate-binding protein 3265484 mbp 321314003420 mbp Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdate ABC transporter periplasmic molybdate-binding protein YP_218069.1 3264831 R 321314 CDS YP_218070.1 62181653 complement(3265532..3266584) 1 NC_006905.1 IPR002491: Periplasmic binding protein; ferrichrome-binding periplasmic protein 3266584 fbp 321314003421 fbp Salmonella enterica subsp. enterica serovar Choleraesuis str. ferrichrome-binding periplasmic protein YP_218070.1 3265532 R 321314 CDS YP_218071.1 62181654 complement(3266660..3266908) 1 NC_006905.1 IPR001109: Hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase 2 accessory protein HypG 3266908 hybG 321314003422 hybG Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 2 accessory protein HypG YP_218071.1 3266660 R 321314 CDS YP_218072.1 62181655 complement(3266936..3267277) 1 NC_006905.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 3267277 hypA 321314003423 hypA Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase nickel incorporation protein HybF YP_218072.1 3266936 R 321314 CDS YP_218073.1 62181656 complement(3267270..3267758) 1 NC_006905.1 hydrogenase 2-specific chaperone 3267758 hybE 321314003424 hybE Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 2-specific chaperone YP_218073.1 3267270 R 321314 CDS YP_218074.1 62181657 complement(3267751..3268245) 1 NC_006905.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 3268245 hybD 321314003425 hybD Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 2 maturation endopeptidase YP_218074.1 3267751 R 321314 CDS YP_218075.1 62181658 complement(3268245..3269948) 1 NC_006905.1 involved in hydrogen uptake; hydrogenase 2 large subunit 3269948 hybC 321314003426 hybC Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 2 large subunit YP_218075.1 3268245 R 321314 CDS YP_218076.1 62181659 complement(3269945..3271123) 1 NC_006905.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; hydrogenase 2 b cytochrome subunit 3271123 hybB 321314003427 hybB Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 2 b cytochrome subunit YP_218076.1 3269945 R 321314 CDS YP_218077.1 62181660 complement(3271113..3272099) 1 NC_006905.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 3272099 hybA 321314003428 hybA Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 2 protein HybA YP_218077.1 3271113 R 321314 CDS YP_218078.1 62181661 complement(3272102..3273220) 1 NC_006905.1 involved in hydrogen uptake; hydrogenase 2 small subunit 3273220 hypO 321314003429 hypO Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrogenase 2 small subunit YP_218078.1 3272102 R 321314 CDS YP_218079.1 62181662 complement(3273228..3273413) 1 NC_006905.1 hypothetical protein 3273413 321314003430 SC3092 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218079.1 3273228 R 321314 CDS YP_218080.1 62181663 complement(3273410..3273697) 1 NC_006905.1 hypothetical protein 3273697 yghW 321314003431 yghW Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218080.1 3273410 R 321314 CDS YP_218081.1 62181664 complement(3273782..3275425) 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein;IPR004091: Aspartate chemoreceptor protein; methyl-accepting chemotaxis protein 3275425 mcp1 321314003432 mcp1 Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting chemotaxis protein YP_218081.1 3273782 R 321314 CDS YP_218082.1 62181665 complement(3275732..3276226) 1 NC_006905.1 IPR005134: Uncharacterized protein family UPF0114; hypothetical protein 3276226 yqhA 321314003433 yqhA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218082.1 3275732 R 321314 CDS YP_218083.1 62181666 complement(3276505..3277020) 1 NC_006905.1 ATP-dependent RNA helicase-like protein 3277020 321314003434 SC3096 Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent RNA helicase-like protein YP_218083.1 3276505 R 321314 CDS YP_218084.1 62181667 3277112..3277522 1 NC_006905.1 hypothetical protein 3277522 321314003435 SC3097 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218084.1 3277112 D 321314 CDS YP_218085.1 62181668 3277509..3277913 1 NC_006905.1 hypothetical protein 3277913 321314003436 SC3098 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218085.1 3277509 D 321314 CDS YP_218086.1 62181669 3278037..3278921 1 NC_006905.1 IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; oxidoreductase 3278921 yghA 321314003437 yghA Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_218086.1 3278037 D 321314 CDS YP_218087.1 62181670 complement(3279034..3279459) 1 NC_006905.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 3279459 exbD 321314003438 exbD Salmonella enterica subsp. enterica serovar Choleraesuis str. biopolymer transport protein ExbD YP_218087.1 3279034 R 321314 CDS YP_218088.1 62181671 complement(3279443..3280174) 1 NC_006905.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB 3280174 exbB 321314003439 exbB Salmonella enterica subsp. enterica serovar Choleraesuis str. biopolymer transport protein ExbB YP_218088.1 3279443 R 321314 CDS YP_218089.1 62181672 complement(3280182..3280331) 1 NC_006905.1 hypothetical protein 3280331 321314003440 SC3102 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218089.1 3280182 R 321314 CDS YP_218090.1 62181673 3280415..3280816 1 NC_006905.1 hypothetical protein 3280816 321314003441 SC3103 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218090.1 3280415 D 321314 CDS YP_218091.1 62181674 3280987..3281670 1 NC_006905.1 IPR001584: Integrase, catalytic domain; integrase 3281670 yis2 321314003442 yis2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_218091.1 3280987 D 321314 CDS YP_218092.1 62181675 3281615..3282943 1 NC_006905.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3282943 metC 321314003443 metC Salmonella enterica subsp. enterica serovar Choleraesuis str. cystathionine beta-lyase YP_218092.1 3281615 D 321314 CDS YP_218093.1 62181676 3283083..3283742 1 NC_006905.1 IPR000252: DedA family; DedA family membrane protein 3283742 yghB 321314003444 yghB Salmonella enterica subsp. enterica serovar Choleraesuis str. DedA family membrane protein YP_218093.1 3283083 D 321314 CDS YP_218094.1 62181677 complement(3283806..3284726) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 3284726 yqhC 321314003445 yqhC Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_218094.1 3283806 R 321314 CDS YP_218095.1 62181678 3284898..3286061 1 NC_006905.1 IPR001670: Iron-containing alcohol dehydrogenase; alcohol dehydrogenase 3286061 yqhD 321314003446 yqhD Salmonella enterica subsp. enterica serovar Choleraesuis str. alcohol dehydrogenase YP_218095.1 3284898 D 321314 CDS YP_218096.1 62181679 3286167..3286994 1 NC_006905.1 methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 3286994 dkgA 321314003447 dkgA Salmonella enterica subsp. enterica serovar Choleraesuis str. 2,5-diketo-D-gluconate reductase A YP_218096.1 3286167 D 321314 CDS YP_218097.1 62181680 3287191..3288645 1 NC_006905.1 IPR001898: Sodium/sulphate symporter; cation transporter 3288645 sot 321314003448 sot Salmonella enterica subsp. enterica serovar Choleraesuis str. cation transporter YP_218097.1 3287191 D 321314 CDS YP_218098.1 62181681 3288690..3289145 1 NC_006905.1 IPR001310: Histidine triad (HIT) protein; hypothetical protein 3289145 hit 321314003449 hit Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218098.1 3288690 D 321314 CDS YP_218099.1 62181682 complement(3289700..3291871) 1 NC_006905.1 IPR005839: Protein of unknown function UPF0004; IPR006638: Elongator protein 3/MiaB/NifB; IPR007197: Radical SAM; hypothetical protein 3291871 ygiR 321314003450 ygiR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218099.1 3289700 R 321314 CDS YP_218100.1 62181683 3292359..3293342 1 NC_006905.1 IPR004682: TRAP dicarboxylate transporter- DctP subunit; dicarboxylate-binding periplasmic protein 3293342 yiiZ 321314003451 yiiZ Salmonella enterica subsp. enterica serovar Choleraesuis str. dicarboxylate-binding periplasmic protein YP_218100.1 3292359 D 321314 CDS YP_218101.1 62181684 3293384..3293866 1 NC_006905.1 IPR007387: Tripartite ATP-independent periplasmic transporters, DctQ component; inner membrane protein 3293866 yiaM 321314003452 yiaM Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218101.1 3293384 D 321314 CDS YP_218102.1 62181685 3293877..3295184 1 NC_006905.1 IPR000252: DedA family; IPR004681: TRAP dicarboxylate transporter DctM subunit; integral membrane protein, transporter 3295184 ygiK 321314003453 ygiK Salmonella enterica subsp. enterica serovar Choleraesuis str. integral membrane protein, transporter YP_218102.1 3293877 D 321314 CDS YP_218103.1 62181686 complement(3295229..3296641) 1 NC_006905.1 IPR001117: Multicopper oxidase, type 1; IPR006311: Twin-arginine translocation pathway signal; repressor protein for FtsI 3296641 sufI 321314003454 sufI Salmonella enterica subsp. enterica serovar Choleraesuis str. repressor protein for FtsI YP_218103.1 3295229 R 321314 CDS YP_218104.1 62181687 complement(3296715..3297452) 1 NC_006905.1 IPR002123: Phospholipid/glycerol acyltransferase; IPR004552: 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 3297452 321314003455 SC3117 Salmonella enterica subsp. enterica serovar Choleraesuis str. 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_218104.1 3296715 R 321314 CDS YP_218105.1 62181688 complement(3297709..3299958) 1 NC_006905.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3299958 parC 321314003456 parC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA topoisomerase IV subunit A YP_218105.1 3297709 R 321314 CDS YP_218106.1 62181689 complement(3300078..3300944) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 3300944 ygiV 321314003457 ygiV Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_218106.1 3300078 R 321314 CDS YP_218107.1 62181690 complement(3301016..3301408) 1 NC_006905.1 IPR005220: Conserved hypothetical protein 156; outer membrane protein 3301408 ygiW 321314003458 ygiW Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_218107.1 3301016 R 321314 CDS YP_218108.1 62181691 3301407..3302219 1 NC_006905.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3302219 ygiX 321314003459 ygiX Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator QseB YP_218108.1 3301407 D 321314 CDS YP_218109.1 62181692 3302216..3303565 1 NC_006905.1 IPR003594: ATP-binding region, ATPase-like; IPR003660: Histidine kinase, HAMP region; IPR003661: Histidine kinase A, N-terminal;IPR004358: Bacterial sensor protein, C-terminal;IPR005467: Histidine kinase; sensor protein QseC 3303565 ygiY 321314003460 ygiY Salmonella enterica subsp. enterica serovar Choleraesuis str. sensor protein QseC YP_218109.1 3302216 D 321314 CDS YP_218110.1 62181693 3303672..3304253 1 NC_006905.1 IPR003680: NAD(P)H dehydrogenase (quinone); NADPH specific quinone oxidoreductase (drug modulator) 3304253 mdaB 321314003461 mdaB Salmonella enterica subsp. enterica serovar Choleraesuis str. NADPH specific quinone oxidoreductase (drug modulator) YP_218110.1 3303672 D 321314 CDS YP_218111.1 62181694 3304285..3304599 1 NC_006905.1 IPR005479: Carbamoyl-phosphate synthase L chain, ATP-binding; IPR007138: Antibiotic biosynthesis monooxygenase; hypothetical protein 3304599 ygiN 321314003462 ygiN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218111.1 3304285 D 321314 CDS YP_218112.1 62181695 complement(3304724..3306616) 1 NC_006905.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3306616 parE 321314003463 parE Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA topoisomerase IV subunit B YP_218112.1 3304724 R 321314 CDS YP_218113.1 62181696 complement(3306644..3307225) 1 NC_006905.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase 3307225 yqiA 321314003464 yqiA Salmonella enterica subsp. enterica serovar Choleraesuis str. esterase YP_218113.1 3306644 R 321314 CDS YP_218114.1 62181697 complement(3307225..3308052) 1 NC_006905.1 IPR004843: Metallo-phosphoesterase; cyclic 3',5'-adenosine monophosphate phosphodiesterase 3308052 icc 321314003465 icc Salmonella enterica subsp. enterica serovar Choleraesuis str. cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_218114.1 3307225 R 321314 CDS YP_218115.1 62181698 complement(3308077..3308499) 1 NC_006905.1 hypothetical protein 3308499 yqiB 321314003466 yqiB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218115.1 3308077 R 321314 CDS YP_218116.1 62181699 complement(3308496..3309128) 1 NC_006905.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase 3309128 nudF 321314003467 nudF Salmonella enterica subsp. enterica serovar Choleraesuis str. ADP-ribose pyrophosphatase YP_218116.1 3308496 R 321314 CDS YP_218117.2 162139544 3309335..3310804 1 NC_006905.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3310804 tolC 321314003468 tolC Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane channel protein YP_218117.2 3309335 D 321314 CDS YP_218118.1 62181701 3311017..3311688 1 NC_006905.1 hypothetical protein 3311688 ygiB 321314003469 ygiB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218118.1 3311017 D 321314 CDS YP_218119.1 62181702 3311694..3312857 1 NC_006905.1 IPR005494: Glutathionylspermidine synthase; hypothetical protein 3312857 ygiC 321314003470 ygiC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218119.1 3311694 D 321314 CDS YP_218120.1 62181703 complement(3312919..3313749) 1 NC_006905.1 seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein 3313749 ygiD 321314003471 ygiD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218120.1 3312919 R 321314 CDS YP_218121.1 62181704 3313848..3314621 1 NC_006905.1 IPR003689: Zinc transporter ZIP; zinc transporter ZupT 3314621 ygiE 321314003472 ygiE Salmonella enterica subsp. enterica serovar Choleraesuis str. zinc transporter ZupT YP_218121.1 3313848 D 321314 CDS YP_218122.1 62181705 complement(3314688..3314864) 1 NC_006905.1 hypothetical protein 3314864 321314003473 SC3135 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218122.1 3314688 R 321314 CDS YP_218123.1 62181706 3315264..3317060 1 NC_006905.1 arylsulfate sulfotransferase 3317060 astJ 321314003474 astJ Salmonella enterica subsp. enterica serovar Choleraesuis str. arylsulfate sulfotransferase YP_218123.1 3315264 D 321314 CDS YP_218124.1 62181707 3317080..3317751 1 NC_006905.1 IPR001853: DSBA oxidoreductase; thiol-disulfide isomerase and thioredoxin 3317751 dsbA 321314003475 dsbA Salmonella enterica subsp. enterica serovar Choleraesuis str. thiol-disulfide isomerase and thioredoxin YP_218124.1 3317080 D 321314 CDS YP_218125.1 62181708 3317766..3318443 1 NC_006905.1 disulfide oxidoreductase 3318443 dsbI 321314003476 dsbI Salmonella enterica subsp. enterica serovar Choleraesuis str. disulfide oxidoreductase YP_218125.1 3317766 D 321314 CDS YP_218126.1 62181709 3318657..3319058 1 NC_006905.1 hypothetical protein 3319058 321314003477 SC3139 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218126.1 3318657 D 321314 CDS YP_218127.1 62181710 3319229..3319912 1 NC_006905.1 IPR001584: Integrase, catalytic domain; integrase 3319912 yis2 321314003478 yis2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_218127.1 3319229 D 321314 CDS YP_218128.1 62181711 complement(3319929..3320582) 1 NC_006905.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3320582 ribB 321314003479 ribB Salmonella enterica subsp. enterica serovar Choleraesuis str. 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_218128.1 3319929 R 321314 CDS YP_218129.1 62181712 3320674..3321315 1 NC_006905.1 IPR007475: Protein of unknown function DUF526; hypothetical protein 3321315 yqiC 321314003480 yqiC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218129.1 3320674 D 321314 CDS YP_218130.1 62181713 complement(3321390..3321593) 1 NC_006905.1 Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS 3321593 glgS 321314003481 glgS Salmonella enterica subsp. enterica serovar Choleraesuis str. glycogen synthesis protein GlgS YP_218130.1 3321390 R 321314 CDS YP_218131.1 62181714 complement(3321696..3321845) 1 NC_006905.1 hypothetical protein 3321845 321314003482 SC3144 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218131.1 3321696 R 321314 CDS YP_218132.1 62181715 3321857..3322477 1 NC_006905.1 inner membrane protein 3322477 yqiJ 321314003483 yqiJ Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218132.1 3321857 D 321314 CDS YP_218133.1 62181716 3322496..3324175 1 NC_006905.1 IPR001107: Band 7 protein; hypothetical protein 3324175 yqiK 321314003484 yqiK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218133.1 3322496 D 321314 CDS YP_218134.1 62181717 complement(3324634..3326067) 1 NC_006905.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3326067 rfaE 321314003485 rfaE Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_218134.1 3324634 R 321314 CDS YP_218135.1 62181718 complement(3326115..3328958) 1 NC_006905.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3328958 glnE 321314003486 glnE Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_218135.1 3326115 R 321314 CDS YP_218136.1 62181719 complement(3329076..3330377) 1 NC_006905.1 IPR007899: CHAD; IPR008172: Adenylate cyclase; hypothetical protein 3330377 ygiF 321314003487 ygiF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218136.1 3329076 R 321314 CDS YP_218137.1 62181720 3330619..3331233 1 NC_006905.1 IPR003646: Bacterial SH3-like region; signal transduction protein 3331233 ygiM 321314003488 ygiM Salmonella enterica subsp. enterica serovar Choleraesuis str. signal transduction protein YP_218137.1 3330619 D 321314 CDS YP_218138.1 62181721 3331296..3332537 1 NC_006905.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3332537 cca 321314003489 cca Salmonella enterica subsp. enterica serovar Choleraesuis str. multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_218138.1 3331296 D 321314 CDS YP_218139.1 62181722 complement(3332642..3333466) 1 NC_006905.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3333466 uppP 321314003490 uppP Salmonella enterica subsp. enterica serovar Choleraesuis str. undecaprenyl pyrophosphate phosphatase YP_218139.1 3332642 R 321314 CDS YP_218140.1 62181723 complement(3333561..3333923) 1 NC_006905.1 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3333923 folB 321314003491 folB Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YP_218140.1 3333561 R 321314 CDS YP_218141.1 62181724 3334027..3334638 1 NC_006905.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3334638 ygiH 321314003492 ygiH Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol-3-phosphate acyltransferase PlsY YP_218141.1 3334027 D 321314 CDS YP_218142.1 62181725 complement(3334888..3335901) 1 NC_006905.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 3335901 gcp 321314003493 gcp Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding/iron metalloprotein/AP endonuclease YP_218142.1 3334888 R 321314 CDS YP_218143.1 62181726 3336129..3336344 1 NC_006905.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3336344 rpsU 321314003494 rpsU Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S21 YP_218143.1 3336129 D 321314 CDS YP_218144.1 62181727 3336580..3338325 1 NC_006905.1 synthesizes RNA primers at the replication forks; DNA primase 3338325 dnaG 321314003495 dnaG Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA primase YP_218144.1 3336580 D 321314 CDS YP_218145.1 62181728 3338340..3340316 1 NC_006905.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3340316 rpoD 321314003496 rpoD Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA polymerase sigma factor RpoD YP_218145.1 3338340 D 321314 CDS YP_218146.1 62181729 complement(3340439..3340945) 1 NC_006905.1 IPR005122: Uracil-DNA glycosylase superfamily; G/U mismatch-specific DNA glycosylase 3340945 mug 321314003497 mug Salmonella enterica subsp. enterica serovar Choleraesuis str. G/U mismatch-specific DNA glycosylase YP_218146.1 3340439 R 321314 CDS YP_218147.1 62181730 complement(3341226..3341993) 1 NC_006905.1 IPR007037: Siderophore-interacting protein; hypothetical protein 3341993 yqjH 321314003499 yqjH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218147.1 3341226 R 321314 CDS YP_218148.1 62181731 3342225..3342872 1 NC_006905.1 IPR005149: Transcriptional regulator PadR-like family; transcriptional regulator 3342872 yqjI 321314003500 yqjI Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_218148.1 3342225 D 321314 CDS YP_218149.1 62181732 complement(3342869..3344434) 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 3344434 mcp2 321314003501 mcp2 Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting chemotaxis protein YP_218149.1 3342869 R 321314 CDS YP_218150.1 62181733 complement(3344822..3346342) 1 NC_006905.1 senses cellular redox state or proton motive force; IPR000014: PAS domain; IPR001610: PAC motif; IPR003660: Histidine kinase, HAMP region;IPR004089: Bacterial chemotaxis sensory transducer;IPR004090: Methyl-accepting chemotaxis protein; aerotaxis sensor receptor 3346342 aer 321314003502 aer Salmonella enterica subsp. enterica serovar Choleraesuis str. aerotaxis sensor receptor YP_218150.1 3344822 R 321314 CDS YP_218151.1 62181734 3346354..3346509 1 NC_006905.1 hypothetical protein 3346509 321314003503 SC3164 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218151.1 3346354 D 321314 CDS YP_218152.2 162139543 3346745..3348151 1 NC_006905.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3348151 oat 321314003504 oat Salmonella enterica subsp. enterica serovar Choleraesuis str. putrescine--2-oxoglutarate aminotransferase YP_218152.2 3346745 D 321314 CDS YP_218153.1 62181736 3348322..3350340 1 NC_006905.1 IPR000205: NAD-binding site; IPR000759: Adrenodoxin reductase; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I;IPR001155: NADH:flavin oxidoreductase/NADH oxidase;IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 2,4-dienoyl-CoA reductase 3350340 fadH 321314003505 fadH Salmonella enterica subsp. enterica serovar Choleraesuis str. 2,4-dienoyl-CoA reductase YP_218153.1 3348322 D 321314 CDS YP_218154.1 62181737 complement(3350421..3351557) 1 NC_006905.1 IPR000051: SAM (and some other nucleotide) binding motif; IPR002052: N-6 Adenine-specific DNA methylase; IPR007848: Methyltransferase small; hypothetical protein 3351557 ygjO 321314003506 ygjO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218154.1 3350421 R 321314 CDS YP_218155.1 62181738 3351643..3352140 1 NC_006905.1 hypothetical protein 3352140 ygjP 321314003507 ygjP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218155.1 3351643 D 321314 CDS YP_218156.1 62181739 3352292..3352984 1 NC_006905.1 integral membrane protein 3352984 ygjQ 321314003508 ygjQ Salmonella enterica subsp. enterica serovar Choleraesuis str. integral membrane protein YP_218156.1 3352292 D 321314 CDS YP_218157.1 62181740 3353073..3354071 1 NC_006905.1 IPR000683: Oxidoreductase, N-terminal; dehydrogenase 3354071 ygjR 321314003509 ygjR Salmonella enterica subsp. enterica serovar Choleraesuis str. dehydrogenase YP_218157.1 3353073 D 321314 CDS YP_218158.1 62181741 3354340..3355308 1 NC_006905.1 IPR005496: Integral membrane protein TerC family; resistance protein 3355308 ygjT 321314003510 ygjT Salmonella enterica subsp. enterica serovar Choleraesuis str. resistance protein YP_218158.1 3354340 D 321314 CDS YP_218159.1 62181742 3355563..3356807 1 NC_006905.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3356807 ygjU 321314003511 ygjU Salmonella enterica subsp. enterica serovar Choleraesuis str. serine/threonine transporter SstT YP_218159.1 3355563 D 321314 CDS YP_218160.1 62181743 3357257..3357919 1 NC_006905.1 IPR000252: DedA family; DedA family membrane protein 3357919 yqjA 321314003512 yqjA Salmonella enterica subsp. enterica serovar Choleraesuis str. DedA family membrane protein YP_218160.1 3357257 D 321314 CDS YP_218161.1 62181744 3357923..3358306 1 NC_006905.1 hypothetical protein 3358306 yqjB 321314003513 yqjB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218161.1 3357923 D 321314 CDS YP_218162.1 62181745 3358451..3358819 1 NC_006905.1 hypothetical protein 3358819 yqjC 321314003514 yqjC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218162.1 3358451 D 321314 CDS YP_218163.1 62181746 3358861..3359166 1 NC_006905.1 hypothetical protein 3359166 yqjD 321314003515 yqjD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218163.1 3358861 D 321314 CDS YP_218164.1 62181747 3359169..3359567 1 NC_006905.1 hypothetical protein 3359567 yqjE 321314003516 yqjE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218164.1 3359169 D 321314 CDS YP_218165.1 62181748 3359564..3359863 1 NC_006905.1 hypothetical protein 3359863 yqjK 321314003517 yqjK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218165.1 3359564 D 321314 CDS YP_218166.1 62181749 3360008..3360493 1 NC_006905.1 IPR007301: DoxD-like protein; membrane-associated protein 3360493 yqjF 321314003518 yqjF Salmonella enterica subsp. enterica serovar Choleraesuis str. membrane-associated protein YP_218166.1 3360008 D 321314 CDS YP_218167.1 62181750 3361671..3362036 1 NC_006905.1 IPR008523: Protein of unknown function DUF805; hypothetical protein 3362036 yhaH 321314003520 yhaH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218167.1 3361671 D 321314 CDS YP_218168.1 62181751 complement(3362075..3362971) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; LysR family transcriptional regulator 3362971 yhaJ 321314003521 yhaJ Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_218168.1 3362075 R 321314 CDS YP_218169.1 62181752 3363076..3363777 1 NC_006905.1 IPR003829: Pirin, N-terminal; hypothetical protein 3363777 yhaK 321314003522 yhaK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218169.1 3363076 D 321314 CDS YP_218170.1 62181753 3363801..3363965 1 NC_006905.1 hypothetical protein 3363965 yhaL 321314003523 yhaL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218170.1 3363801 D 321314 CDS YP_218171.1 62181754 complement(3364078..3365388) 1 NC_006905.1 hypothetical protein 3365388 yhaN 321314003524 yhaN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218171.1 3364078 R 321314 CDS YP_218172.1 62181755 complement(3365414..3366745) 1 NC_006905.1 IPR002091: Aromatic amino acid permease; IPR002422: Amino acid/polyamine transporter family II; IPR004694: Serine transporter; HAAAP family transport protein 3366745 yhaO 321314003525 yhaO Salmonella enterica subsp. enterica serovar Choleraesuis str. HAAAP family transport protein YP_218172.1 3365414 R 321314 CDS YP_218173.1 62181756 complement(3367060..3368424) 1 NC_006905.1 IPR004644: Iron-sulfur-dependent L-serine dehydratase single chain form; IPR005130: Serine dehydratase alpha chain; IPR005131: Serine dehydratase beta chain; L-serine deaminase 3368424 tdcG 321314003526 tdcG Salmonella enterica subsp. enterica serovar Choleraesuis str. L-serine deaminase YP_218173.1 3367060 R 321314 CDS YP_218174.1 62181757 complement(3368494..3370788) 1 NC_006905.1 IPR001150: Formate C-acetyltransferase glycine radical; IPR004184: Pyruvate formate-lyase, PFL; IPR005949: Formate acetyltransferase; pyruvate formate-lyase 4/ 2-ketobutyrate formate-lyase 3370788 tdcE 321314003527 tdcE Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate formate-lyase 4/ 2-ketobutyrate formate-lyase YP_218174.1 3368494 R 321314 CDS YP_218175.1 62181758 complement(3370822..3372030) 1 NC_006905.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase 3372030 tdcD 321314003528 tdcD Salmonella enterica subsp. enterica serovar Choleraesuis str. propionate/acetate kinase YP_218175.1 3370822 R 321314 CDS YP_218176.1 62181759 complement(3372097..3373428) 1 NC_006905.1 involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC 3373428 tdcC 321314003529 tdcC Salmonella enterica subsp. enterica serovar Choleraesuis str. threonine/serine transporter TdcC YP_218176.1 3372097 R 321314 CDS YP_218177.1 62181760 complement(3373449..3374438) 1 NC_006905.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 3374438 tdcB 321314003530 tdcB Salmonella enterica subsp. enterica serovar Choleraesuis str. threonine dehydratase YP_218177.1 3373449 R 321314 CDS YP_218178.1 62181761 complement(3374536..3375474) 1 NC_006905.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA 3375474 tdcA 321314003531 tdcA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator TdcA YP_218178.1 3374536 R 321314 CDS YP_218179.1 62181762 complement(3376015..3376233) 1 NC_006905.1 hypothetical protein 3376233 321314003532 SC3192 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218179.1 3376015 R 321314 CDS YP_218180.1 62181763 3376188..3376574 1 NC_006905.1 hypothetical protein 3376574 321314003533 SC3193 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218180.1 3376188 D 321314 CDS YP_218181.1 62181764 complement(3376593..3377738) 1 NC_006905.1 IPR004381: Conserved hypothetical protein 45; glycerate kinase 3377738 garK 321314003534 garK Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerate kinase YP_218181.1 3376593 R 321314 CDS YP_218182.1 62181765 complement(3377836..3378726) 1 NC_006905.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3378726 garR 321314003535 garR Salmonella enterica subsp. enterica serovar Choleraesuis str. tartronate semialdehyde reductase YP_218182.1 3377836 R 321314 CDS YP_218183.1 62181766 complement(3378752..3379522) 1 NC_006905.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 3379522 garL 321314003536 garL Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_218183.1 3378752 R 321314 CDS YP_218184.1 62181767 3381881..3382735 1 NC_006905.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 3382735 gatY 321314003538 gatY Salmonella enterica subsp. enterica serovar Choleraesuis str. tagatose-bisphosphate aldolase YP_218184.1 3381881 D 321314 CDS YP_218185.1 62181768 3382856..3384127 1 NC_006905.1 tagatose 6-phosphate kinase 1 3384127 gatZ 321314003539 gatZ Salmonella enterica subsp. enterica serovar Choleraesuis str. tagatose 6-phosphate kinase 1 YP_218185.1 3382856 D 321314 CDS YP_218186.1 62181769 3384142..3384606 1 NC_006905.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 3384606 ptkA 321314003540 ptkA Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system galactitol-specific transporter subunit IIA YP_218186.1 3384142 D 321314 CDS YP_218187.1 62181770 3384637..3384921 1 NC_006905.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 3384921 ptkB 321314003541 ptkB Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system galactitol-specific transporter subunit IIB YP_218187.1 3384637 D 321314 CDS YP_218188.1 62181771 3384925..3386298 1 NC_006905.1 IPR001865: Ribosomal protein S2; IPR004703: PTS system Galactitol-specific IIC component; PTS family galactitol-specific enzyme IIC 3386298 ptkC 321314003542 ptkC Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS family galactitol-specific enzyme IIC YP_218188.1 3384925 D 321314 CDS YP_218189.1 62181772 3386342..3387385 1 NC_006905.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3387385 gadD 321314003543 gadD Salmonella enterica subsp. enterica serovar Choleraesuis str. galactitol-1-phosphate dehydrogenase YP_218189.1 3386342 D 321314 CDS YP_218190.1 62181773 3387496..3388269 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; IPR001969: Eukaryotic/viral aspartic protease, active site; sugar metabolism transcriptional regulator 3388269 gadR 321314003544 gadR Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar metabolism transcriptional regulator YP_218190.1 3387496 D 321314 CDS YP_218191.1 62181774 complement(3388427..3389290) 1 NC_006905.1 IPR000878: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; IPR008189: Protein of unknown function UPF0011; hypothetical protein 3389290 yraL 321314003545 yraL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218191.1 3388427 R 321314 CDS YP_218192.1 62181775 3389354..3391396 1 NC_006905.1 IPR007443: LppC lipoprotein; transglycosylase 3391396 yraM 321314003546 yraM Salmonella enterica subsp. enterica serovar Choleraesuis str. transglycosylase YP_218192.1 3389354 D 321314 CDS YP_218193.2 162139542 3391354..3391749 1 NC_006905.1 IPR003509: Protein of unknown function UPF0102; hypothetical protein 3391749 yraN 321314003547 yraN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218193.2 3391354 D 321314 CDS YP_218194.1 62181777 3391771..3392361 1 NC_006905.1 Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; chromosome replication initiator DnaA 3392361 yraO 321314003548 yraO Salmonella enterica subsp. enterica serovar Choleraesuis str. chromosome replication initiator DnaA YP_218194.1 3391771 D 321314 CDS YP_218195.1 62181778 3392371..3392946 1 NC_006905.1 IPR007055: Transport-associated domain; hypothetical protein 3392946 yraP 321314003549 yraP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218195.1 3392371 D 321314 CDS YP_218196.1 62181779 complement(3393013..3393681) 1 NC_006905.1 hypothetical protein 3393681 yraR 321314003550 yraR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218196.1 3393013 R 321314 CDS YP_218197.1 62181780 3393779..3394297 1 NC_006905.1 IPR002818: Protein of unknown function ThiJ/PfpI; IPR006286: Intracellular protease PfpI; hypothetical protein 3394297 yhbO 321314003551 yhbO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218197.1 3393779 D 321314 CDS YP_218198.1 62181781 complement(3394277..3394720) 1 NC_006905.1 hypothetical protein 3394720 yhbP 321314003552 yhbP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218198.1 3394277 R 321314 CDS YP_218199.1 62181782 3394713..3395075 1 NC_006905.1 IPR000305: Excinuclease ABC, C subunit, N-terminal; GIY-YIG nuclease superfamily protein 3395075 yhbQ 321314003553 yhbQ Salmonella enterica subsp. enterica serovar Choleraesuis str. GIY-YIG nuclease superfamily protein YP_218199.1 3394713 D 321314 CDS YP_218200.1 62181783 complement(3395062..3395565) 1 NC_006905.1 IPR000182: GCN5-related N-acetyltransferase; ABC transporter membrane protein 3395565 yhbS 321314003554 yhbS Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter membrane protein YP_218200.1 3395062 R 321314 CDS YP_218201.1 62181784 complement(3395559..3396083) 1 NC_006905.1 IPR003033: Sterol-binding; hypothetical protein 3396083 yhbT 321314003555 yhbT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218201.1 3395559 R 321314 CDS YP_218202.1 62181785 3396300..3397295 1 NC_006905.1 IPR001539: Peptidase U32; protease 3397295 yhbU 321314003556 yhbU Salmonella enterica subsp. enterica serovar Choleraesuis str. protease YP_218202.1 3396300 D 321314 CDS YP_218203.1 62181786 3397286..3398182 1 NC_006905.1 IPR001539: Peptidase U32; hypothetical protein 3398182 yhbV 321314003557 yhbV Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218203.1 3397286 D 321314 CDS YP_218204.1 62181787 3398360..3399367 1 NC_006905.1 IPR002103: Bacterial luciferase; hypothetical protein 3399367 yhbW 321314003558 yhbW Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218204.1 3398360 D 321314 CDS YP_218205.1 62181788 complement(3399345..3400064) 1 NC_006905.1 inner membrane protein 3400064 yafK 321314003559 yafK Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218205.1 3399345 R 321314 CDS YP_218206.1 62181789 3400223..3400753 1 NC_006905.1 hypothetical protein 3400753 321314003560 SC3219 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218206.1 3400223 D 321314 CDS YP_218207.1 62181790 complement(3400814..3402058) 1 NC_006905.1 tryptophan transporter of high affinity; tryptophan permease 3402058 mtr 321314003561 mtr Salmonella enterica subsp. enterica serovar Choleraesuis str. tryptophan permease YP_218207.1 3400814 R 321314 CDS YP_218208.2 162139541 complement(3402212..3404101) 1 NC_006905.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD 3404101 deaD 321314003562 deaD Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent RNA helicase DeaD YP_218208.2 3402212 R 321314 CDS YP_218209.1 62181792 complement(3404280..3405164) 1 NC_006905.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 3405164 nlpI 321314003563 nlpI Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoprotein NlpI YP_218209.1 3404280 R 321314 CDS YP_218210.1 62181793 complement(3405274..3407439) 1 NC_006905.1 IPR000110: Ribosomal protein S1; IPR001247: 3' exoribonuclease; IPR003029: RNA binding S1;IPR004087: KH domain;IPR004088: KH domain, type 1; polynucleotide phosphorylase 3407439 pnp 321314003564 pnp Salmonella enterica subsp. enterica serovar Choleraesuis str. polynucleotide phosphorylase YP_218210.1 3405274 R 321314 CDS YP_218211.1 62181794 complement(3407651..3407920) 1 NC_006905.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3407920 rpsO 321314003565 rpsO Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S15 YP_218211.1 3407651 R 321314 CDS YP_218212.1 62181795 complement(3408071..3409015) 1 NC_006905.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3409015 truB 321314003566 truB Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA pseudouridine synthase B YP_218212.1 3408071 R 321314 CDS YP_218213.1 62181796 complement(3409015..3409416) 1 NC_006905.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3409416 rbfA 321314003567 rbfA Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosome-binding factor A YP_218213.1 3409015 R 321314 CDS YP_218214.1 62181797 complement(3409637..3412315) 1 NC_006905.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3412315 infB 321314003568 infB Salmonella enterica subsp. enterica serovar Choleraesuis str. translation initiation factor IF-2 YP_218214.1 3409637 R 321314 CDS YP_218215.1 62181798 complement(3412340..3413842) 1 NC_006905.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3413842 nusA 321314003569 nusA Salmonella enterica subsp. enterica serovar Choleraesuis str. transcription elongation factor NusA YP_218215.1 3412340 R 321314 CDS YP_218216.2 162139540 complement(3413870..3414322) 1 NC_006905.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3414322 yhbC 321314003570 yhbC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218216.2 3413870 R 321314 CDS YP_218218.2 162139539 3414950..3416293 1 NC_006905.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3416293 argG 321314003572 argG Salmonella enterica subsp. enterica serovar Choleraesuis str. argininosuccinate synthase YP_218218.2 3414950 D 321314 CDS YP_218219.2 162139538 complement(3416591..3416923) 1 NC_006905.1 IPR004692: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 3416923 secG 321314003574 secG Salmonella enterica subsp. enterica serovar Choleraesuis str. preprotein translocase subunit SecG YP_218219.2 3416591 R 321314 CDS YP_218220.1 62181803 complement(3417146..3418483) 1 NC_006905.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3418483 glmM 321314003575 glmM Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglucosamine mutase YP_218220.1 3417146 R 321314 CDS YP_218221.1 62181804 complement(3419430..3421373) 1 NC_006905.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease 3421373 hflB 321314003577 hflB Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent metalloprotease YP_218221.1 3419430 R 321314 CDS YP_218222.1 62181805 complement(3421468..3422094) 1 NC_006905.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase 3422094 rrmJ 321314003578 rrmJ Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA methyltransferase YP_218222.1 3421468 R 321314 CDS YP_218223.1 62181806 3422182..3422514 1 NC_006905.1 RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3422514 yhbY 321314003579 yhbY Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA-binding protein YhbY YP_218223.1 3422182 D 321314 CDS YP_218224.1 62181807 complement(3422670..3423146) 1 NC_006905.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 3423146 greA 321314003580 greA Salmonella enterica subsp. enterica serovar Choleraesuis str. transcription elongation factor GreA YP_218224.1 3422670 R 321314 CDS YP_218225.1 62181808 3423394..3424827 1 NC_006905.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 3424827 dacB 321314003581 dacB Salmonella enterica subsp. enterica serovar Choleraesuis str. D-alanyl-D-alanine carboxypeptidase YP_218225.1 3423394 D 321314 CDS YP_218226.1 62181809 complement(3424958..3426130) 1 NC_006905.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3426130 obgE 321314003582 obgE Salmonella enterica subsp. enterica serovar Choleraesuis str. GTPase ObgE YP_218226.1 3424958 R 321314 CDS YP_218227.1 62181810 complement(3426146..3427111) 1 NC_006905.1 IPR000620: Protein of unknown function DUF6; hypothetical protein 3427111 rhbE 321314003583 rhbE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218227.1 3426146 R 321314 CDS YP_218228.1 62181811 complement(3427241..3427498) 1 NC_006905.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3427498 rpmA 321314003584 rpmA Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L27 YP_218228.1 3427241 R 321314 CDS YP_218229.1 62181812 3427563..3427880 1 NC_006905.1 hypothetical protein 3427880 321314003585 SC3242 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218229.1 3427563 D 321314 CDS YP_218230.1 62181813 3427913..3429058 1 NC_006905.1 IPR000092: Polyprenyl synthetase; octaprenyl diphosphate synthase 3429058 ispB 321314003586 ispB Salmonella enterica subsp. enterica serovar Choleraesuis str. octaprenyl diphosphate synthase YP_218230.1 3427913 D 321314 CDS YP_218231.1 62181814 3429291..3429578 1 NC_006905.1 activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3429578 nlp 321314003587 nlp Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator Nlp YP_218231.1 3429291 D 321314 CDS YP_218232.1 62181815 complement(3429637..3430896) 1 NC_006905.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3430896 murA 321314003588 murA Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_218232.1 3429637 R 321314 CDS YP_218233.1 62181816 complement(3430950..3431243) 1 NC_006905.1 IPR002634: BolA-like protein; BolA family transcriptional regulator 3431243 yrbA 321314003589 yrbA Salmonella enterica subsp. enterica serovar Choleraesuis str. BolA family transcriptional regulator YP_218233.1 3430950 R 321314 CDS YP_218234.1 62181817 complement(3431392..3431688) 1 NC_006905.1 IPR002645: Sulfate transporter/antisigma-factor antagonist STAS; STAS domain-containing protein 3431688 yrbB 321314003590 yrbB Salmonella enterica subsp. enterica serovar Choleraesuis str. STAS domain-containing protein YP_218234.1 3431392 R 321314 CDS YP_218235.1 62181818 complement(3431688..3432323) 1 NC_006905.1 IPR008869: Toluene tolerance; ABC transporter ATP-binding protein 3432323 yrbC 321314003591 yrbC Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATP-binding protein YP_218235.1 3431688 R 321314 CDS YP_218236.1 62181819 complement(3432342..3432893) 1 NC_006905.1 IPR003399: Mce4/Rv3499c/MTV023.06c protein; ABC transporter substrate-binding protein 3432893 yrbD 321314003592 yrbD Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter substrate-binding protein YP_218236.1 3432342 R 321314 CDS YP_218237.1 62181820 complement(3432898..3433680) 1 NC_006905.1 IPR003453: Protein of unknown function DUF140; ABC transporter membrane protein 3433680 yrbE 321314003593 yrbE Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter membrane protein YP_218237.1 3432898 R 321314 CDS YP_218238.1 62181821 complement(3433688..3434500) 1 NC_006905.1 ATP-binding subunit of a ABC toluene efflux transporter; ABC transporter ATP-binding protein 3434500 yrbF 321314003594 yrbF Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATP-binding protein YP_218238.1 3433688 R 321314 CDS YP_218239.1 62181822 3434713..3435690 1 NC_006905.1 YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 3435690 yrbG 321314003595 yrbG Salmonella enterica subsp. enterica serovar Choleraesuis str. calcium/sodium:proton antiporter YP_218239.1 3434713 D 321314 CDS YP_218240.1 62181823 3435680..3436690 1 NC_006905.1 IPR000644: CBS domain; IPR001347: Sugar isomerase (SIS); IPR004800: KpsF/GutQ family protein; D-arabinose 5-phosphate isomerase 3436690 yrbH 321314003596 yrbH Salmonella enterica subsp. enterica serovar Choleraesuis str. D-arabinose 5-phosphate isomerase YP_218240.1 3435680 D 321314 CDS YP_218241.1 62181824 3436711..3437277 1 NC_006905.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3437277 yrbI 321314003597 yrbI Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_218241.1 3436711 D 321314 CDS YP_218242.1 62181825 3437274..3437849 1 NC_006905.1 hypothetical protein 3437849 yrbK 321314003598 yrbK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218242.1 3437274 D 321314 CDS YP_218243.1 62181826 3437797..3438372 1 NC_006905.1 LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide transport periplasmic protein LptA 3438372 yhbN 321314003599 yhbN Salmonella enterica subsp. enterica serovar Choleraesuis str. lipopolysaccharide transport periplasmic protein LptA YP_218243.1 3437797 D 321314 CDS YP_218244.1 62181827 3438379..3439104 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; ABC transporter ATP-binding protein 3439104 yhbG 321314003600 yhbG Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATP-binding protein YP_218244.1 3438379 D 321314 CDS YP_218245.1 62181828 3439152..3440585 1 NC_006905.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3440585 rpoN 321314003601 rpoN Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA polymerase factor sigma-54 YP_218245.1 3439152 D 321314 CDS YP_218246.1 62181829 3440608..3440895 1 NC_006905.1 YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; sigma(54) modulation protein 3440895 yhbH 321314003602 yhbH Salmonella enterica subsp. enterica serovar Choleraesuis str. sigma(54) modulation protein YP_218246.1 3440608 D 321314 CDS YP_218247.1 62181830 3441013..3441504 1 NC_006905.1 IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; IPR006320: PTS IIA-like nitrogen-regulatory protein PtsN; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3441504 ptsN 321314003603 ptsN Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_218247.1 3441013 D 321314 CDS YP_218248.1 62181831 3441550..3442404 1 NC_006905.1 IPR005337: Uncharacterised P-loop ATPase family UPF0042; hypothetical protein 3442404 yhbJ 321314003604 yhbJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218248.1 3441550 D 321314 CDS YP_218249.1 62181832 3442401..3442673 1 NC_006905.1 IPR000032: Phosphocarrier HPr protein; IPR001020: HPr histidine phosphorylation site; IPR002114: HPr serine phosphorylation site; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3442673 ptsO 321314003605 ptsO Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) YP_218249.1 3442401 D 321314 CDS YP_218250.1 62181833 3442922..3443554 1 NC_006905.1 hypothetical protein 3443554 yrbL 321314003606 yrbL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218250.1 3442922 D 321314 CDS YP_218251.1 62181834 complement(3443629..3444357) 1 NC_006905.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3444357 mtgA 321314003607 mtgA Salmonella enterica subsp. enterica serovar Choleraesuis str. monofunctional biosynthetic peptidoglycan transglycosylase YP_218251.1 3443629 R 321314 CDS YP_218252.1 62181835 complement(3444354..3445007) 1 NC_006905.1 IPR002818: Protein of unknown function ThiJ/PfpI; isoprenoid biosynthesis protein with amidotransferase-like domain 3445007 yhbL 321314003608 yhbL Salmonella enterica subsp. enterica serovar Choleraesuis str. isoprenoid biosynthesis protein with amidotransferase-like domain YP_218252.1 3444354 R 321314 CDS YP_218253.1 62181836 complement(3445234..3447570) 1 NC_006905.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 3447570 arcB 321314003609 arcB Salmonella enterica subsp. enterica serovar Choleraesuis str. aerobic respiration control sensor protein ArcB YP_218253.1 3445234 R 321314 CDS YP_218254.1 62181837 complement(3447664..3448593) 1 NC_006905.1 IPR005911: Conserved hypothetical protein 1212; IPR006638: Elongator protein 3/MiaB/NifB; IPR007197: Radical SAM; hypothetical protein 3448593 yhcC 321314003610 yhcC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218254.1 3447664 R 321314 CDS YP_218255.1 62181838 3449265..3453725 1 NC_006905.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3453725 gltB 321314003611 gltB Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate synthase subunit alpha YP_218255.1 3449265 D 321314 CDS YP_218256.1 62181839 3453735..3455153 1 NC_006905.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3455153 gltD 321314003612 gltD Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate synthase subunit beta YP_218256.1 3453735 D 321314 CDS YP_218257.1 62181840 3455360..3456463 1 NC_006905.1 hypothetical protein 3456463 yhcG 321314003613 yhcG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218257.1 3455360 D 321314 CDS YP_218258.1 62181841 3456579..3457832 1 NC_006905.1 IPR001248: Permease for cytosine/purines, uracil, thiamine, allantoin; cytosine permease 3457832 codB 321314003614 codB Salmonella enterica subsp. enterica serovar Choleraesuis str. cytosine permease YP_218258.1 3456579 D 321314 CDS YP_218259.1 62181842 3457819..3459099 1 NC_006905.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3459099 codA 321314003615 codA Salmonella enterica subsp. enterica serovar Choleraesuis str. cytosine deaminase YP_218259.1 3457819 D 321314 CDS YP_218260.1 62181843 complement(3459182..3459649) 1 NC_006905.1 IPR004375: Conserved hypothetical protein 22; hypothetical protein 3459649 yhcH 321314003616 yhcH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218260.1 3459182 R 321314 CDS YP_218261.1 62181844 complement(3459646..3460521) 1 NC_006905.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 3460521 nanK 321314003617 nanK Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylmannosamine kinase YP_218261.1 3459646 R 321314 CDS YP_218262.1 62181845 complement(3460518..3461207) 1 NC_006905.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 3461207 nanE 321314003618 nanE Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylmannosamine-6-phosphate 2-epimerase YP_218262.1 3460518 R 321314 CDS YP_218263.1 62181846 complement(3461254..3462744) 1 NC_006905.1 IPR004742: Sialic acid transporter; IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; sialic acid transporter 3462744 nanT 321314003619 nanT Salmonella enterica subsp. enterica serovar Choleraesuis str. sialic acid transporter YP_218263.1 3461254 R 321314 CDS YP_218264.1 62181847 complement(3462860..3463753) 1 NC_006905.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 3463753 nanA 321314003620 nanA Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylneuraminate lyase YP_218264.1 3462860 R 321314 CDS YP_218265.1 62181848 complement(3463888..3464679) 1 NC_006905.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 3464679 yhcK 321314003621 yhcK Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator NanR YP_218265.1 3463888 R 321314 CDS YP_218266.1 62181849 complement(3464788..3465288) 1 NC_006905.1 IPR007481: Stringent starvation protein B; ClpXP protease specificity-enhancing factor 3465288 sspB 321314003622 sspB Salmonella enterica subsp. enterica serovar Choleraesuis str. ClpXP protease specificity-enhancing factor YP_218266.1 3464788 R 321314 CDS YP_218267.1 62181850 complement(3465294..3465932) 1 NC_006905.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3465932 sspA 321314003623 sspA Salmonella enterica subsp. enterica serovar Choleraesuis str. stringent starvation protein A YP_218267.1 3465294 R 321314 CDS YP_218268.1 62181851 complement(3466000..3466947) 1 NC_006905.1 hypothetical protein 3466947 321314003624 SC3281 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218268.1 3466000 R 321314 CDS YP_218269.1 62181852 complement(3467147..3467539) 1 NC_006905.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3467539 rpsI 321314003625 rpsI Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S9 YP_218269.1 3467147 R 321314 CDS YP_218270.2 162139537 complement(3467555..3467983) 1 NC_006905.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3467983 rplM 321314003626 rplM Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L13 YP_218270.2 3467555 R 321314 CDS YP_218271.1 62181854 complement(3468286..3469410) 1 NC_006905.1 IPR005654: AFG1-like ATPase; ATPase 3469410 yhcM 321314003627 yhcM Salmonella enterica subsp. enterica serovar Choleraesuis str. ATPase YP_218271.1 3468286 R 321314 CDS YP_218272.1 62181855 3469597..3470001 1 NC_006905.1 cytochrome d ubiquinol oxidase subunit III 3470001 yhcB 321314003628 yhcB Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome d ubiquinol oxidase subunit III YP_218272.1 3469597 D 321314 CDS YP_218273.1 62181856 3470158..3471525 1 NC_006905.1 IPR001254: Peptidase S1, chymotrypsin family; IPR001478: PDZ/DHR/GLGF domain; IPR001940: Peptidase S1C, HtrA/DegQ protease; serine endoprotease 3471525 degQ 321314003629 degQ Salmonella enterica subsp. enterica serovar Choleraesuis str. serine endoprotease YP_218273.1 3470158 D 321314 CDS YP_218274.1 62181857 3471618..3472688 1 NC_006905.1 IPR001254: Peptidase S1, chymotrypsin family; IPR001478: PDZ/DHR/GLGF domain; IPR001940: Peptidase S1C, HtrA/DegQ protease; serine endoprotease 3472688 degS 321314003630 degS Salmonella enterica subsp. enterica serovar Choleraesuis str. serine endoprotease YP_218274.1 3471618 D 321314 CDS YP_218275.1 62181858 complement(3472722..3473453) 1 NC_006905.1 inner membrane protein 3473453 321314003631 SC3288 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218275.1 3472722 R 321314 CDS YP_218276.1 62181859 complement(3473473..3474774) 1 NC_006905.1 IPR005661: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; oxalacetate decarboxylase subunit beta 3474774 oadB 321314003632 oadB Salmonella enterica subsp. enterica serovar Choleraesuis str. oxalacetate decarboxylase subunit beta YP_218276.1 3473473 R 321314 CDS YP_218277.1 62181860 complement(3474787..3476562) 1 NC_006905.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 3476562 oadA 321314003633 oadA Salmonella enterica subsp. enterica serovar Choleraesuis str. oxaloacetate decarboxylase YP_218277.1 3474787 R 321314 CDS YP_218278.1 62181861 complement(3476578..3476820) 1 NC_006905.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 3476820 oadG 321314003634 oadG Salmonella enterica subsp. enterica serovar Choleraesuis str. oxaloacetate decarboxylase subunit gamma YP_218278.1 3476578 R 321314 CDS YP_218279.1 62181862 complement(3476977..3477594) 1 NC_006905.1 Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta 3477594 ttdB 321314003635 ttdB Salmonella enterica subsp. enterica serovar Choleraesuis str. L(+)-tartrate dehydratase subunit beta YP_218279.1 3476977 R 321314 CDS YP_218280.1 62181863 complement(3477594..3478493) 1 NC_006905.1 Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha 3478493 ttdA 321314003636 ttdA Salmonella enterica subsp. enterica serovar Choleraesuis str. tartrate dehydratase subunit alpha YP_218280.1 3477594 R 321314 CDS YP_218281.1 62181864 complement(3478526..3479866) 1 NC_006905.1 IPR001898: Sodium/sulphate symporter; cation transporter 3479866 321314003637 SC3294 Salmonella enterica subsp. enterica serovar Choleraesuis str. cation transporter YP_218281.1 3478526 R 321314 CDS YP_218282.1 62181865 complement(3480005..3480670) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 3480670 321314003638 SC3295 Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_218282.1 3480005 R 321314 CDS YP_218283.1 62181866 complement(3480657..3481286) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 3481286 321314003639 SC3296 Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_218283.1 3480657 R 321314 CDS YP_218284.1 62181867 complement(3481406..3482344) 1 NC_006905.1 oxidizes malate to oxaloacetate; malate dehydrogenase 3482344 mdh 321314003640 mdh Salmonella enterica subsp. enterica serovar Choleraesuis str. malate dehydrogenase YP_218284.1 3481406 R 321314 CDS YP_218285.1 62181868 3482759..3483229 1 NC_006905.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 3483229 argR 321314003641 argR Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine repressor ArgR YP_218285.1 3482759 D 321314 CDS YP_218286.1 62181869 3483594..3483857 1 NC_006905.1 outer membrane protein 3483857 yhcN 321314003642 yhcN Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane protein YP_218286.1 3483594 D 321314 CDS YP_218287.1 62181870 3483961..3484227 1 NC_006905.1 hypothetical protein 3484227 321314003643 SC3300 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218287.1 3483961 D 321314 CDS YP_218288.1 62181871 complement(3484287..3484559) 1 NC_006905.1 hypothetical protein 3484559 yhcO 321314003644 yhcO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218288.1 3484287 R 321314 CDS YP_218289.1 62181872 complement(3484731..3486698) 1 NC_006905.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB 3486698 yhcP 321314003645 yhcP Salmonella enterica subsp. enterica serovar Choleraesuis str. p-hydroxybenzoic acid efflux subunit AaeB YP_218289.1 3484731 R 321314 CDS YP_218290.1 62181873 complement(3486704..3487636) 1 NC_006905.1 with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA 3487636 yhcQ 321314003646 yhcQ Salmonella enterica subsp. enterica serovar Choleraesuis str. p-hydroxybenzoic acid efflux subunit AaeA YP_218290.1 3486704 R 321314 CDS YP_218291.1 62181874 complement(3487644..3487847) 1 NC_006905.1 membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein 3487847 yhcR 321314003647 yhcR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218291.1 3487644 R 321314 CDS YP_218292.1 62181875 3488029..3488958 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR005119: LysR substrate binding domain; DNA-binding transcriptional regulator 3488958 yhcS 321314003648 yhcS Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator YP_218292.1 3488029 D 321314 CDS YP_218293.2 229037905 complement(3489081..3490526) 1 NC_006905.1 responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD 3490526 tldD 321314003649 tldD Salmonella enterica subsp. enterica serovar Choleraesuis str. protease TldD YP_218293.2 3489081 R 321314 CDS YP_218294.1 62181877 complement(3490671..3494471) 1 NC_006905.1 hypothetical protein 3494471 yhdP 321314003650 yhdP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218294.1 3490671 R 321314 CDS YP_218295.1 62181878 complement(3494582..3496051) 1 NC_006905.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 3496051 cafA 321314003651 cafA Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease G YP_218295.1 3494582 R 321314 CDS YP_218296.1 62181879 complement(3496041..3496634) 1 NC_006905.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3496634 maf 321314003652 maf Salmonella enterica subsp. enterica serovar Choleraesuis str. Maf-like protein YP_218296.1 3496041 R 321314 CDS YP_218297.1 62181880 complement(3496643..3497134) 1 NC_006905.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 3497134 mreD 321314003653 mreD Salmonella enterica subsp. enterica serovar Choleraesuis str. rod shape-determining protein MreD YP_218297.1 3496643 R 321314 CDS YP_218298.1 62181881 complement(3497134..3498186) 1 NC_006905.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3498186 mreC 321314003654 mreC Salmonella enterica subsp. enterica serovar Choleraesuis str. rod shape-determining protein MreC YP_218298.1 3497134 R 321314 CDS YP_218299.2 229037904 complement(3498251..3499294) 1 NC_006905.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3499294 mreB 321314003655 mreB Salmonella enterica subsp. enterica serovar Choleraesuis str. rod shape-determining protein MreB YP_218299.2 3498251 R 321314 CDS YP_218300.1 62181883 complement(3499602..3501542) 1 NC_006905.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 3501542 yhdA 321314003656 yhdA Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory protein CsrD YP_218300.1 3499602 R 321314 CDS YP_218301.1 62181884 3501746..3502720 1 NC_006905.1 IPR000566: Lipocalin-related protein and Bos/Can/Equ allergen; IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR002085: Zinc-containing alcohol dehydrogenase superfamily; oxidoreductase 3502720 yhdH 321314003657 yhdH Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_218301.1 3501746 D 321314 CDS YP_218302.1 62181885 3502832..3503836 1 NC_006905.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 3503836 yedY 321314003658 yedY Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfite oxidase subunit YedY YP_218302.1 3502832 D 321314 CDS YP_218303.1 62181886 3503837..3504436 1 NC_006905.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 3504436 yedZ 321314003659 yedZ Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfite oxidase subunit YedZ YP_218303.1 3503837 D 321314 CDS YP_218304.1 62181887 3504829..3505299 1 NC_006905.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3505299 accB 321314003660 accB Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_218304.1 3504829 D 321314 CDS YP_218305.1 62181888 3505310..3506659 1 NC_006905.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3506659 accC 321314003661 accC Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl-CoA carboxylase biotin carboxylase subunit YP_218305.1 3505310 D 321314 CDS YP_218306.1 62181889 3506768..3507010 1 NC_006905.1 hypothetical protein 3507010 yhdT 321314003662 yhdT Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218306.1 3506768 D 321314 CDS YP_218307.1 62181890 3507000..3508451 1 NC_006905.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3508451 panF 321314003663 panF Salmonella enterica subsp. enterica serovar Choleraesuis str. sodium/panthothenate symporter YP_218307.1 3507000 D 321314 CDS YP_218308.1 62181891 3508463..3509344 1 NC_006905.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3509344 prmA 321314003664 prmA Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L11 methyltransferase YP_218308.1 3508463 D 321314 CDS YP_218309.1 62181892 3510006..3510971 1 NC_006905.1 IPR001269: Protein of unknown function UPF0034; IPR003009: FMN/related compound-binding core; IPR004652: TIM-barrel protein nifR3; tRNA-dihydrouridine synthase B 3510971 yhdG 321314003665 yhdG Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA-dihydrouridine synthase B YP_218309.1 3510006 D 321314 CDS YP_218310.1 62181893 3510997..3511293 1 NC_006905.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; Fis family transcriptional regulator 3511293 fis 321314003666 fis Salmonella enterica subsp. enterica serovar Choleraesuis str. Fis family transcriptional regulator YP_218310.1 3510997 D 321314 CDS YP_218311.1 62181894 3511373..3512263 1 NC_006905.1 IPR001091: Site-specific DNA-methyltransferase (cytosine-N4-specific); IPR002052: N-6 Adenine-specific DNA methylase; IPR002295: N6 adenine-specific DNA methyltransferase, D21 class;IPR002941: DNA methylase N-4/N-6; methyltransferase 3512263 yhdJ 321314003667 yhdJ Salmonella enterica subsp. enterica serovar Choleraesuis str. methyltransferase YP_218311.1 3511373 D 321314 CDS YP_218312.1 62181895 3512319..3512510 1 NC_006905.1 hypothetical protein 3512510 yhdU 321314003668 yhdU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218312.1 3512319 D 321314 CDS YP_218313.1 62181896 complement(3514763..3515425) 1 NC_006905.1 IPR001647: Bacterial regulatory protein TetR, HTH motif; DNA-binding transcriptional regulator EnvR 3515425 envR 321314003670 envR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator EnvR YP_218313.1 3514763 R 321314 CDS YP_218314.1 62181897 3515498..3515656 1 NC_006905.1 hypothetical protein 3515656 321314003671 SC3327 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218314.1 3515498 D 321314 CDS YP_218315.1 62181898 3517007..3520120 1 NC_006905.1 IPR001036: Acriflavin resistance protein; IPR004764: Hydrophobe/amphiphile efflux-1 HAE1; multidrug transporter acriflavin resistance protein F 3520120 acrF 321314003673 acrF Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug transporter acriflavin resistance protein F YP_218315.1 3517007 D 321314 CDS YP_218316.1 62181899 complement(3520216..3520380) 1 NC_006905.1 hypothetical protein 3520380 321314003674 SC3329 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218316.1 3520216 R 321314 CDS YP_218317.1 62181900 3520356..3520577 1 NC_006905.1 outer membrane lipoprotein 3520577 yhdV 321314003675 yhdV Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_218317.1 3520356 D 321314 CDS YP_218321.1 62181904 3526627..3526749 1 NC_006905.1 hypothetical protein 3526749 321314003682 SC3334 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218321.1 3526627 D 321314 CDS YP_218322.1 62181905 3526924..3527478 1 NC_006905.1 IPR001451: Bacterial transferase hexapeptide repeat; ferripyochelin binding protein 3527478 yrdA 321314003683 yrdA Salmonella enterica subsp. enterica serovar Choleraesuis str. ferripyochelin binding protein YP_218322.1 3526924 D 321314 CDS YP_218323.1 62181906 complement(3527454..3527711) 1 NC_006905.1 hypothetical protein 3527711 yrdB 321314003684 yrdB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218323.1 3527454 R 321314 CDS YP_218324.1 62181907 complement(3527708..3528526) 1 NC_006905.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3528526 aroE 321314003685 aroE Salmonella enterica subsp. enterica serovar Choleraesuis str. shikimate 5-dehydrogenase YP_218324.1 3527708 R 321314 CDS YP_218325.1 62181908 complement(3528531..3529133) 1 NC_006905.1 RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; ribosome maturation factor 3529133 yrdC 321314003686 yrdC Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosome maturation factor YP_218325.1 3528531 R 321314 CDS YP_218326.1 62181909 complement(3529108..3529650) 1 NC_006905.1 IPR000380: DNA topoisomerase I; hypothetical protein 3529650 yrdD 321314003687 yrdD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218326.1 3529108 R 321314 CDS YP_218327.1 62181910 complement(3529677..3530150) 1 NC_006905.1 IPR007456: Protein of unknown function DUF494; hypothetical protein 3530150 smg 321314003688 smg Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218327.1 3529677 R 321314 CDS YP_218328.1 62181911 complement(3530122..3531246) 1 NC_006905.1 IPR003488: SMF protein; DNA protecting protein DprA 3531246 smf 321314003689 smf Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA protecting protein DprA YP_218328.1 3530122 R 321314 CDS YP_218329.1 62181912 3531378..3531887 1 NC_006905.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3531887 def 321314003690 def Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide deformylase YP_218329.1 3531378 D 321314 CDS YP_218330.1 62181913 3531903..3532850 1 NC_006905.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3532850 fmt 321314003691 fmt Salmonella enterica subsp. enterica serovar Choleraesuis str. methionyl-tRNA formyltransferase YP_218330.1 3531903 D 321314 CDS YP_218331.1 62181914 3532902..3534191 1 NC_006905.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase GidB 3534191 sun 321314003692 sun Salmonella enterica subsp. enterica serovar Choleraesuis str. 16S rRNA methyltransferase GidB YP_218331.1 3532902 D 321314 CDS YP_218332.1 62181915 3534213..3535589 1 NC_006905.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3535589 trkA 321314003693 trkA Salmonella enterica subsp. enterica serovar Choleraesuis str. potassium transporter peripheral membrane protein YP_218332.1 3534213 D 321314 CDS YP_218333.1 62181916 3535730..3536143 1 NC_006905.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3536143 mscL 321314003694 mscL Salmonella enterica subsp. enterica serovar Choleraesuis str. large-conductance mechanosensitive channel YP_218333.1 3535730 D 321314 CDS YP_218334.1 62181917 complement(3536406..3536831) 1 NC_006905.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 3536831 zntR 321314003695 zntR Salmonella enterica subsp. enterica serovar Choleraesuis str. zinc-responsive transcriptional regulator YP_218334.1 3536406 R 321314 CDS YP_218335.1 62181918 complement(3536842..3537210) 1 NC_006905.1 hypothetical protein 3537210 yhdN 321314003696 yhdN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218335.1 3536842 R 321314 CDS YP_218336.1 62181919 complement(3537318..3537701) 1 NC_006905.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 3537701 rplQ 321314003697 rplQ Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L17 YP_218336.1 3537318 R 321314 CDS YP_218337.1 62181920 complement(3537742..3538731) 1 NC_006905.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 3538731 rpoA 321314003698 rpoA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-directed RNA polymerase subunit alpha YP_218337.1 3537742 R 321314 CDS YP_218338.1 62181921 complement(3538757..3539377) 1 NC_006905.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3539377 rpsD 321314003699 rpsD Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S4 YP_218338.1 3538757 R 321314 CDS YP_218339.1 62181922 complement(3539411..3539800) 1 NC_006905.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 3539800 rpsK 321314003700 rpsK Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S11 YP_218339.1 3539411 R 321314 CDS YP_218340.1 62181923 complement(3540322..3540438) 1 NC_006905.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 3540438 rpmJ 321314003701 rpmJ Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L36 YP_218340.1 3540322 R 321314 CDS YP_218341.1 62181924 complement(3540470..3541801) 1 NC_006905.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 3541801 secY 321314003702 secY Salmonella enterica subsp. enterica serovar Choleraesuis str. preprotein translocase subunit SecY YP_218341.1 3540470 R 321314 CDS YP_218342.1 62181925 complement(3541809..3542243) 1 NC_006905.1 late assembly protein; 50S ribosomal protein L15 3542243 rplO 321314003703 rplO Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L15 YP_218342.1 3541809 R 321314 CDS YP_218343.1 62181926 complement(3542247..3542426) 1 NC_006905.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 3542426 rpmD 321314003704 rpmD Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L30 YP_218343.1 3542247 R 321314 CDS YP_218344.1 62181927 complement(3542430..3542933) 1 NC_006905.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 3542933 rpsE 321314003705 rpsE Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S5 YP_218344.1 3542430 R 321314 CDS YP_218345.1 62181928 complement(3542948..3543301) 1 NC_006905.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 3543301 rplR 321314003706 rplR Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L18 YP_218345.1 3542948 R 321314 CDS YP_218346.1 62181929 complement(3543311..3543844) 1 NC_006905.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 3543844 rplF 321314003707 rplF Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L6 YP_218346.1 3543311 R 321314 CDS YP_218347.1 62181930 complement(3543857..3544249) 1 NC_006905.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 3544249 rpsH 321314003708 rpsH Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S8 YP_218347.1 3543857 R 321314 CDS YP_218348.1 62181931 complement(3544283..3544588) 1 NC_006905.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 3544588 rpsN 321314003709 rpsN Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S14 YP_218348.1 3544283 R 321314 CDS YP_218349.1 62181932 complement(3544603..3545142) 1 NC_006905.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 3545142 rplE 321314003710 rplE Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L5 YP_218349.1 3544603 R 321314 CDS YP_218350.1 62181933 complement(3545157..3545471) 1 NC_006905.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 3545471 rplX 321314003711 rplX Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L24 YP_218350.1 3545157 R 321314 CDS YP_218351.1 62181934 complement(3545482..3545853) 1 NC_006905.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 3545853 rplN 321314003712 rplN Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L14 YP_218351.1 3545482 R 321314 CDS YP_218352.1 62181935 complement(3546017..3546271) 1 NC_006905.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 3546271 rpsQ 321314003713 rpsQ Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S17 YP_218352.1 3546017 R 321314 CDS YP_218353.1 62181936 complement(3546271..3546462) 1 NC_006905.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 3546462 rpmC 321314003714 rpmC Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L29 YP_218353.1 3546271 R 321314 CDS YP_218354.1 62181937 complement(3546462..3546872) 1 NC_006905.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 3546872 rplP 321314003715 rplP Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L16 YP_218354.1 3546462 R 321314 CDS YP_218355.1 62181938 complement(3546885..3547586) 1 NC_006905.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 3547586 rpsC 321314003716 rpsC Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S3 YP_218355.1 3546885 R 321314 CDS YP_004770514.1 342240211 complement(3547604..3547936) 1 NC_006905.1 50S ribosomal protein L22 3547936 321314003717 SC3368a Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L22 YP_004770514.1 3547604 R 321314 CDS YP_218357.1 62181940 complement(3547951..3548229) 1 NC_006905.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 3548229 rpsS 321314003718 rpsS Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S19 YP_218357.1 3547951 R 321314 CDS YP_218358.1 62181941 complement(3548246..3549067) 1 NC_006905.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 3549067 rplB 321314003719 rplB Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L2 YP_218358.1 3548246 R 321314 CDS YP_218359.1 62181942 complement(3549085..3549387) 1 NC_006905.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 3549387 rplW 321314003720 rplW Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L23 YP_218359.1 3549085 R 321314 CDS YP_218360.1 62181943 complement(3549384..3549989) 1 NC_006905.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3549989 rplD 321314003721 rplD Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L4 YP_218360.1 3549384 R 321314 CDS YP_218361.1 62181944 complement(3550000..3550629) 1 NC_006905.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 3550629 rplC 321314003722 rplC Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L3 YP_218361.1 3550000 R 321314 CDS YP_218362.1 62181945 complement(3550662..3550973) 1 NC_006905.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 3550973 rpsJ 321314003723 rpsJ Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S10 YP_218362.1 3550662 R 321314 CDS YP_218363.1 62181946 3551227..3551820 1 NC_006905.1 IPR000045: Prepilin cysteine protease (C20), type IV; leader peptidase HopD 3551820 hopD 321314003724 hopD Salmonella enterica subsp. enterica serovar Choleraesuis str. leader peptidase HopD YP_218363.1 3551227 D 321314 CDS YP_218364.1 62181947 complement(3551817..3552293) 1 NC_006905.1 iron storage protein; bacterioferritin 3552293 bfr 321314003725 bfr Salmonella enterica subsp. enterica serovar Choleraesuis str. bacterioferritin YP_218364.1 3551817 R 321314 CDS YP_218365.1 62181948 complement(3552366..3552560) 1 NC_006905.1 IPR007419: BFD-like [2Fe-2S]-binding domain; bacterioferritin-associated ferredoxin 3552560 bfd 321314003726 bfd Salmonella enterica subsp. enterica serovar Choleraesuis str. bacterioferritin-associated ferredoxin YP_218365.1 3552366 R 321314 CDS YP_218366.2 162139536 complement(3552745..3553929) 1 NC_006905.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3553929 tuf 321314003727 tuf Salmonella enterica subsp. enterica serovar Choleraesuis str. elongation factor Tu YP_218366.2 3552745 R 321314 CDS YP_218367.1 62181950 complement(3554001..3556115) 1 NC_006905.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3556115 fusA 321314003728 fusA Salmonella enterica subsp. enterica serovar Choleraesuis str. elongation factor G YP_218367.1 3554001 R 321314 CDS YP_218368.1 62181951 complement(3556212..3556682) 1 NC_006905.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3556682 rpsG 321314003729 rpsG Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S7 YP_218368.1 3556212 R 321314 CDS YP_218369.2 162139535 complement(3556778..3557152) 1 NC_006905.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 3557152 rpsL 321314003730 rpsL Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S12 YP_218369.2 3556778 R 321314 CDS YP_218370.1 62181953 complement(3557278..3557565) 1 NC_006905.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB 3557565 yheL 321314003731 yheL Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfur transfer complex subunit TusB YP_218370.1 3557278 R 321314 CDS YP_218371.1 62181954 complement(3557573..3557929) 1 NC_006905.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 3557929 yheM 321314003732 yheM Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfur relay protein TusC YP_218371.1 3557573 R 321314 CDS YP_218372.1 62181955 complement(3557929..3558315) 1 NC_006905.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 3558315 yheN 321314003733 yheN Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfur transfer complex subunit TusD YP_218372.1 3557929 R 321314 CDS YP_218373.1 62181956 complement(3558315..3559049) 1 NC_006905.1 hypothetical protein 3559049 yheO 321314003734 yheO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218373.1 3558315 R 321314 CDS YP_218374.1 62181957 complement(3559314..3560132) 1 NC_006905.1 rotamase; FKBP-type peptidylprolyl isomerase 3560132 fkpA 321314003735 fkpA Salmonella enterica subsp. enterica serovar Choleraesuis str. FKBP-type peptidylprolyl isomerase YP_218374.1 3559314 R 321314 CDS YP_218375.1 62181958 3560352..3560570 1 NC_006905.1 IPR007236: SlyX; hypothetical protein 3560570 slyX 321314003736 slyX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218375.1 3560352 D 321314 CDS YP_218376.1 62181959 complement(3560765..3561355) 1 NC_006905.1 rotamase; FKBP-type peptidylprolyl isomerase 3561355 slyD 321314003737 slyD Salmonella enterica subsp. enterica serovar Choleraesuis str. FKBP-type peptidylprolyl isomerase YP_218376.1 3560765 R 321314 CDS YP_218377.1 62181960 complement(3561450..3561650) 1 NC_006905.1 hypothetical protein 3561650 yheV 321314003738 yheV Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218377.1 3561450 R 321314 CDS YP_218378.1 62181961 complement(3561660..3563465) 1 NC_006905.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 3563465 kefB 321314003739 kefB Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione-regulated potassium-efflux system protein KefB YP_218378.1 3561660 R 321314 CDS YP_218379.1 62181962 complement(3563465..3564016) 1 NC_006905.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 3564016 yheR 321314003740 yheR Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione-regulated potassium-efflux system ancillary protein KefG YP_218379.1 3563465 R 321314 CDS YP_218380.1 62181963 3564272..3566179 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; ABC transporter ATP-binding protein 3566179 yheS 321314003741 yheS Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATP-binding protein YP_218380.1 3564272 D 321314 CDS YP_218381.1 62181964 3566342..3566563 1 NC_006905.1 ABC transporter ATPase 3566563 mauR 321314003742 mauR Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATPase YP_218381.1 3566342 D 321314 CDS YP_218382.1 62181965 complement(3566565..3566876) 1 NC_006905.1 hypothetical protein 3566876 ydhR 321314003743 ydhR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218382.1 3566565 R 321314 CDS YP_218383.1 62181966 3567064..3568140 1 NC_006905.1 IPR000073: Alpha/beta hydrolase fold; IPR000379: Esterase/lipase/thioesterase; IPR000952: Protein of unknown function UPF0017; hydrolase 3568140 yheT 321314003744 yheT Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase YP_218383.1 3567064 D 321314 CDS YP_218384.1 62181967 3568137..3568355 1 NC_006905.1 hypothetical protein 3568355 yheU 321314003745 yheU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218384.1 3568137 D 321314 CDS YP_218385.1 62181968 3568407..3569276 1 NC_006905.1 IPR006082: Phosphoribulokinase; IPR006083: Phosphoribulokinase/uridine kinase; phosphoribulokinase 3569276 prkB 321314003746 prkB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoribulokinase YP_218385.1 3568407 D 321314 CDS YP_218386.1 62181969 complement(3569372..3569776) 1 NC_006905.1 IPR003718: OsmC-like protein; hypothetical protein 3569776 yhfA 321314003747 yhfA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218386.1 3569372 R 321314 CDS YP_218387.1 62181970 3570084..3570716 1 NC_006905.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3570716 crp 321314003748 crp Salmonella enterica subsp. enterica serovar Choleraesuis str. cAMP-regulatory protein YP_218387.1 3570084 D 321314 CDS YP_218388.1 62181971 3570753..3572852 1 NC_006905.1 inner membrane protein 3572852 yhfK 321314003749 yhfK Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218388.1 3570753 D 321314 CDS YP_218389.1 62181972 complement(3572895..3574112) 1 NC_006905.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3574112 argD 321314003750 argD Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_218389.1 3572895 R 321314 CDS YP_218390.1 62181973 complement(3574198..3574761) 1 NC_006905.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 3574761 pabA 321314003751 pabA Salmonella enterica subsp. enterica serovar Choleraesuis str. para-aminobenzoate synthase component II YP_218390.1 3574198 R 321314 CDS YP_218391.1 62181974 complement(3574793..3575395) 1 NC_006905.1 IPR003812: Filamentation induced by cAMP protein Fic; cell filamentation protein Fic 3575395 fic 321314003752 fic Salmonella enterica subsp. enterica serovar Choleraesuis str. cell filamentation protein Fic YP_218391.1 3574793 R 321314 CDS YP_218392.1 62181975 complement(3575661..3576233) 1 NC_006905.1 IPR002130: Peptidyl-prolyl cis-trans isomerase, cyclophilin type; peptidyl-prolyl cis-trans isomerase A 3576233 ppiA 321314003753 ppiA Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidyl-prolyl cis-trans isomerase A YP_218392.1 3575661 R 321314 CDS YP_218393.1 62181976 3576510..3577691 1 NC_006905.1 IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; hypothetical protein 3577691 yhfC 321314003754 yhfC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218393.1 3576510 D 321314 CDS YP_218394.1 62181977 complement(3577824..3578000) 1 NC_006905.1 hypothetical protein 3578000 321314003755 SC3407 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218394.1 3577824 R 321314 CDS YP_218395.1 62181978 3577953..3580496 1 NC_006905.1 IPR000103: Pyridine nucleotide-disulphide oxidoreductase, class-II; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I; IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;IPR005117: Nitrite/sulfite reductase ferredoxin-like half domain;IPR006066: Nitrite and sulfite reductase iron-sulfur/siroheme-binding site;IPR006067: Nitrite and sulphite reductase 4Fe-4S domain;IPR007419: BFD-like [2Fe-2S]-binding domain; nitrite reductase, large subunit 3580496 nirB 321314003756 nirB Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrite reductase, large subunit YP_218395.1 3577953 D 321314 CDS YP_218396.1 62181979 3580493..3580819 1 NC_006905.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 3580819 nirD 321314003757 nirD Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrite reductase small subunit YP_218396.1 3580493 D 321314 CDS YP_218397.1 62181980 3581003..3581812 1 NC_006905.1 member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3581812 nirC 321314003758 nirC Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrite transporter NirC YP_218397.1 3581003 D 321314 CDS YP_218398.1 62181981 3581824..3583197 1 NC_006905.1 multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; siroheme synthase 3583197 cysG 321314003759 cysG Salmonella enterica subsp. enterica serovar Choleraesuis str. siroheme synthase YP_218398.1 3581824 D 321314 CDS YP_218399.1 62181982 3589344..3589592 1 NC_006905.1 outer membrane lipoprotein 3589592 yhfL 321314003761 yhfL Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_218399.1 3589344 D 321314 CDS YP_218400.1 62181983 complement(3589737..3590741) 1 NC_006905.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3590741 trpS 321314003762 trpS Salmonella enterica subsp. enterica serovar Choleraesuis str. tryptophanyl-tRNA synthetase YP_218400.1 3589737 R 321314 CDS YP_218401.1 62181984 complement(3590734..3591492) 1 NC_006905.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 3591492 gph 321314003763 gph Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglycolate phosphatase YP_218401.1 3590734 R 321314 CDS YP_218402.1 62181985 complement(3591485..3592162) 1 NC_006905.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 3592162 rpe 321314003764 rpe Salmonella enterica subsp. enterica serovar Choleraesuis str. ribulose-phosphate 3-epimerase YP_218402.1 3591485 R 321314 CDS YP_218403.1 62181986 complement(3592180..3593016) 1 NC_006905.1 IPR002052: N-6 Adenine-specific DNA methylase; IPR002294: N6 adenine-specific DNA methyltransferase, D12 class; DNA adenine methylase 3593016 dam 321314003765 dam Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA adenine methylase YP_218403.1 3592180 R 321314 CDS YP_218404.1 62181987 complement(3593197..3594474) 1 NC_006905.1 IPR001950: Translation initiation factor SUI1; hypothetical protein 3594474 damX 321314003766 damX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218404.1 3593197 R 321314 CDS YP_218405.1 62181988 complement(3594572..3595660) 1 NC_006905.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3595660 aroB 321314003767 aroB Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-dehydroquinate synthase YP_218405.1 3594572 R 321314 CDS YP_218406.1 62181989 complement(3595717..3596238) 1 NC_006905.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 3596238 aroK 321314003768 aroK Salmonella enterica subsp. enterica serovar Choleraesuis str. shikimate kinase I YP_218406.1 3595717 R 321314 CDS YP_218407.1 62181990 complement(3596703..3597941) 1 NC_006905.1 outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; porin 3597941 hofQ 321314003769 hofQ Salmonella enterica subsp. enterica serovar Choleraesuis str. porin YP_218407.1 3596703 R 321314 CDS YP_218408.1 62181991 complement(3597856..3598257) 1 NC_006905.1 hypothetical protein 3598257 yrfA 321314003770 yrfA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218408.1 3597856 R 321314 CDS YP_218409.1 62181992 complement(3598247..3598690) 1 NC_006905.1 hypothetical protein 3598690 yrfB 321314003771 yrfB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218409.1 3598247 R 321314 CDS YP_218410.1 62181993 complement(3598704..3599243) 1 NC_006905.1 IPR007813: Fimbrial assembly; hypothetical protein 3599243 yrfC 321314003772 yrfC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218410.1 3598704 R 321314 CDS YP_218411.1 62181994 complement(3599243..3600022) 1 NC_006905.1 hypothetical protein 3600022 yrfD 321314003773 yrfD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218411.1 3599243 R 321314 CDS YP_218412.2 229037903 3600143..3602695 1 NC_006905.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3602695 mrcA 321314003774 mrcA Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidoglycan synthetase YP_218412.2 3600143 D 321314 CDS YP_218413.2 162139534 complement(3602791..3603354) 1 NC_006905.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3603354 nudE 321314003775 nudE Salmonella enterica subsp. enterica serovar Choleraesuis str. ADP-ribose diphosphatase NudE YP_218413.2 3602791 R 321314 CDS YP_218414.1 62181997 3603677..3605809 1 NC_006905.1 hypothetical protein 3605809 yrfF 321314003776 yrfF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218414.1 3603677 D 321314 CDS YP_218415.1 62181998 3605874..3606542 1 NC_006905.1 IPR005833: Haloacid dehalogenase/epoxide hydrolase; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006402: HAD-superfamily hydrolase, subfamily IA, variant 3; hydrolase 3606542 yrfG 321314003777 yrfG Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase YP_218415.1 3605874 D 321314 CDS YP_218416.1 62181999 3606553..3606954 1 NC_006905.1 IPR002942: RNA-binding S4; ribosome-associated heat shock protein Hsp15 3606954 yrfH 321314003778 yrfH Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosome-associated heat shock protein Hsp15 YP_218416.1 3606553 D 321314 CDS YP_218417.2 162139533 3606979..3607857 1 NC_006905.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 3607857 hslO 321314003779 hslO Salmonella enterica subsp. enterica serovar Choleraesuis str. heat shock protein 33 YP_218417.2 3606979 D 321314 CDS YP_218418.1 62182001 complement(3607968..3609677) 1 NC_006905.1 hypothetical protein 3609677 yhgE 321314003780 yhgE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218418.1 3607968 R 321314 CDS YP_218419.1 62182002 3610057..3611676 1 NC_006905.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3611676 pckA 321314003781 pckA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoenolpyruvate carboxykinase YP_218419.1 3610057 D 321314 CDS YP_218420.1 62182003 complement(3611751..3613103) 1 NC_006905.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 3613103 envZ 321314003782 envZ Salmonella enterica subsp. enterica serovar Choleraesuis str. osmolarity sensor protein YP_218420.1 3611751 R 321314 CDS YP_218421.1 62182004 complement(3613100..3613834) 1 NC_006905.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 3613834 ompR 321314003783 ompR Salmonella enterica subsp. enterica serovar Choleraesuis str. osmolarity response regulator YP_218421.1 3613100 R 321314 CDS YP_218422.1 62182005 3614045..3614518 1 NC_006905.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3614518 greB 321314003784 greB Salmonella enterica subsp. enterica serovar Choleraesuis str. transcription elongation factor GreB YP_218422.1 3614045 D 321314 CDS YP_218423.1 62182006 3614617..3616947 1 NC_006905.1 IPR003029: RNA binding S1; IPR006641: Ribonuclease RNase H fold containing; RNase R 3616947 yhgF 321314003785 yhgF Salmonella enterica subsp. enterica serovar Choleraesuis str. RNase R YP_218423.1 3614617 D 321314 CDS YP_218424.1 62182007 3617401..3617628 1 NC_006905.1 IPR007167: FeoA; ferrous iron transport protein A 3617628 feoA 321314003786 feoA Salmonella enterica subsp. enterica serovar Choleraesuis str. ferrous iron transport protein A YP_218424.1 3617401 D 321314 CDS YP_218425.1 62182008 3617647..3619965 1 NC_006905.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3619965 feoB 321314003787 feoB Salmonella enterica subsp. enterica serovar Choleraesuis str. ferrous iron transport protein B YP_218425.1 3617647 D 321314 CDS YP_218426.1 62182009 3619978..3620214 1 NC_006905.1 hypothetical protein 3620214 yhgG 321314003788 yhgG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218426.1 3619978 D 321314 CDS YP_218427.1 62182010 3620460..3621374 1 NC_006905.1 IPR006842: transposase, YhgA-like; hypothetical protein 3621374 yfcI 321314003789 yfcI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218427.1 3620460 D 321314 CDS YP_218428.1 62182011 complement(3621410..3622180) 1 NC_006905.1 Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH 3622180 bioH 321314003790 bioH Salmonella enterica subsp. enterica serovar Choleraesuis str. carboxylesterase BioH YP_218428.1 3621410 R 321314 CDS YP_218429.1 62182012 3622218..3622901 1 NC_006905.1 involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3622901 yhgH 321314003791 yhgH Salmonella enterica subsp. enterica serovar Choleraesuis str. gluconate periplasmic binding protein YP_218429.1 3622218 D 321314 CDS YP_218430.1 62182013 3622960..3623535 1 NC_006905.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 3623535 yhgI 321314003792 yhgI Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA uptake protein YP_218430.1 3622960 D 321314 CDS YP_218431.1 62182014 3623912..3625228 1 NC_006905.1 IPR003474: Gluconate transporter; GntP family, high-affinity gluconate permease in GNT I system 3625228 gntT 321314003793 gntT Salmonella enterica subsp. enterica serovar Choleraesuis str. GntP family, high-affinity gluconate permease in GNT I system YP_218431.1 3623912 D 321314 CDS YP_218432.1 62182015 complement(3625347..3627425) 1 NC_006905.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 3627425 malQ 321314003794 malQ Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-alpha-glucanotransferase YP_218432.1 3625347 R 321314 CDS YP_218433.1 62182016 complement(3627435..3629828) 1 NC_006905.1 IPR000811: Glycosyl transferase, family 35; maltodextrin phosphorylase 3629828 malP 321314003795 malP Salmonella enterica subsp. enterica serovar Choleraesuis str. maltodextrin phosphorylase YP_218433.1 3627435 R 321314 CDS YP_218434.1 62182017 3630422..3633127 1 NC_006905.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3633127 malT 321314003796 malT Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator MalT YP_218434.1 3630422 D 321314 CDS YP_218435.1 62182018 complement(3633269..3633829) 1 NC_006905.1 hypothetical protein 3633829 321314003797 SC3448 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218435.1 3633269 R 321314 CDS YP_218436.1 62182019 complement(3633826..3634782) 1 NC_006905.1 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase 3634782 rtcA 321314003798 rtcA Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA 3'-terminal-phosphate cyclase YP_218436.1 3633826 R 321314 CDS YP_218437.1 62182020 complement(3634864..3636081) 1 NC_006905.1 IPR001233: Protein of unknown function UPF0027; hypothetical protein 3636081 rtcB 321314003799 rtcB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218437.1 3634864 R 321314 CDS YP_218438.1 62182021 complement(3636425..3637978) 1 NC_006905.1 IPR003439: ABC transporter; IPR008858: TROVE; ribonucleoprotein related-protein 3637978 321314003800 SC3451 Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonucleoprotein related-protein YP_218438.1 3636425 R 321314 CDS YP_218439.1 62182022 complement(3637971..3638123) 1 NC_006905.1 hypothetical protein 3638123 321314003801 SC3452 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218439.1 3637971 R 321314 CDS YP_218440.1 62182023 3638168..3639751 1 NC_006905.1 IPR002078: Sigma-54 factor interaction domain; IPR003593: AAA ATPase; sigma N (sigma 54)-dependent regulator of rtcBA expression (EBP family) 3639751 rtcR 321314003802 rtcR Salmonella enterica subsp. enterica serovar Choleraesuis str. sigma N (sigma 54)-dependent regulator of rtcBA expression (EBP family) YP_218440.1 3638168 D 321314 CDS YP_218441.1 62182024 complement(3639748..3640506) 1 NC_006905.1 represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR 3640506 glpR 321314003803 glpR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional repressor GlpR YP_218441.1 3639748 R 321314 CDS YP_218442.1 62182025 complement(3640600..3641430) 1 NC_006905.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG 3641430 glpG 321314003804 glpG Salmonella enterica subsp. enterica serovar Choleraesuis str. intramembrane serine protease GlpG YP_218442.1 3640600 R 321314 CDS YP_218443.1 62182026 complement(3641506..3641832) 1 NC_006905.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 3641832 glpE 321314003805 glpE Salmonella enterica subsp. enterica serovar Choleraesuis str. thiosulfate sulfurtransferase YP_218443.1 3641506 R 321314 CDS YP_218444.1 62182027 3642031..3643539 1 NC_006905.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3643539 glpD 321314003806 glpD Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol-3-phosphate dehydrogenase YP_218444.1 3642031 D 321314 CDS YP_218445.1 62182028 complement(3643586..3644131) 1 NC_006905.1 hypothetical protein 3644131 321314003807 SC3458 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218445.1 3643586 R 321314 CDS YP_218446.1 62182029 complement(3644141..3645694) 1 NC_006905.1 phosphate-binding protein 3645694 321314003808 SC3459 Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphate-binding protein YP_218446.1 3644141 R 321314 CDS YP_218447.1 62182030 complement(3645795..3646904) 1 NC_006905.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 3646904 gldA 321314003809 gldA Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol dehydrogenase YP_218447.1 3645795 R 321314 CDS YP_218448.1 62182031 3647244..3648578 1 NC_006905.1 IPR005828: General substrate transporter; IPR007114: Major facilitator superfamily; hypothetical protein 3648578 tub 321314003810 tub Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218448.1 3647244 D 321314 CDS YP_218449.1 62182032 3650334..3651239 1 NC_006905.1 IPR002220: Dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 3651239 yagE 321314003812 yagE Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydrodipicolinate synthetase YP_218449.1 3650334 D 321314 CDS YP_218450.1 62182033 complement(3651283..3652038) 1 NC_006905.1 IPR005471: Bacterial regulatory proteins, IclR family; IPR005473: Bacterial transcription regulator, ICLR-like family; transcriptional regulator 3652038 yfaX 321314003813 yfaX Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_218450.1 3651283 R 321314 CDS YP_218451.1 62182034 complement(3652216..3654663) 1 NC_006905.1 IPR000811: Glycosyl transferase, family 35; glycogen phosphorylase 3654663 glgP 321314003814 glgP Salmonella enterica subsp. enterica serovar Choleraesuis str. glycogen phosphorylase YP_218451.1 3652216 R 321314 CDS YP_218452.1 62182035 complement(3654683..3656116) 1 NC_006905.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 3656116 glgA 321314003815 glgA Salmonella enterica subsp. enterica serovar Choleraesuis str. glycogen synthase YP_218452.1 3654683 R 321314 CDS YP_218453.1 62182036 complement(3656116..3657411) 1 NC_006905.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3657411 glgC 321314003816 glgC Salmonella enterica subsp. enterica serovar Choleraesuis str. glucose-1-phosphate adenylyltransferase YP_218453.1 3656116 R 321314 CDS YP_218454.1 62182037 complement(3657426..3659402) 1 NC_006905.1 catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching protein 3659402 glgX 321314003817 glgX Salmonella enterica subsp. enterica serovar Choleraesuis str. glycogen debranching protein YP_218454.1 3657426 R 321314 CDS YP_218455.1 62182038 complement(3659399..3661585) 1 NC_006905.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 3661585 glgB 321314003818 glgB Salmonella enterica subsp. enterica serovar Choleraesuis str. glycogen branching protein YP_218455.1 3659399 R 321314 CDS YP_218456.1 62182039 complement(3661932..3663038) 1 NC_006905.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3663038 asd 321314003819 asd Salmonella enterica subsp. enterica serovar Choleraesuis str. aspartate-semialdehyde dehydrogenase YP_218456.1 3661932 R 321314 CDS YP_218457.1 62182040 3663089..3663232 1 NC_006905.1 hypothetical protein 3663232 321314003820 SC3470 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218457.1 3663089 D 321314 CDS YP_218458.1 62182041 complement(3663462..3664802) 1 NC_006905.1 IPR003474: Gluconate transporter; low affinity gluconate transporter 3664802 gntU 321314003821 gntU Salmonella enterica subsp. enterica serovar Choleraesuis str. low affinity gluconate transporter YP_218458.1 3663462 R 321314 CDS YP_218459.2 162139532 complement(3664799..3665332) 1 NC_006905.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase 3665332 gntK 321314003822 gntK Salmonella enterica subsp. enterica serovar Choleraesuis str. gluconate kinase YP_218459.2 3664799 R 321314 CDS YP_218460.1 62182043 complement(3665471..3666532) 1 NC_006905.1 IPR000843: Bacterial regulatory protein LacI, HTH motif; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 3666532 gntR 321314003823 gntR Salmonella enterica subsp. enterica serovar Choleraesuis str. LacI family transcriptional regulator YP_218460.1 3665471 R 321314 CDS YP_218461.1 62182044 complement(3666596..3667291) 1 NC_006905.1 IPR003829: Pirin, N-terminal; IPR007113: Cupin domain; hypothetical protein 3667291 yhhW 321314003824 yhhW Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218461.1 3666596 R 321314 CDS YP_218462.1 62182045 complement(3667415..3668452) 1 NC_006905.1 IPR000683: Oxidoreductase, N-terminal; IPR004104: Oxidoreductase, C-terminal; dehydrogenase 3668452 yhhX 321314003825 yhhX Salmonella enterica subsp. enterica serovar Choleraesuis str. dehydrogenase YP_218462.1 3667415 R 321314 CDS YP_218463.1 62182046 3668920..3669408 1 NC_006905.1 YhhY; regulated by the fur regulator; unknown function; acetyltransferase YhhY 3669408 yhhY 321314003826 yhhY Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyltransferase YhhY YP_218463.1 3668920 D 321314 CDS YP_218464.1 62182047 3669672..3670886 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; sugar metabolism transcriptional regulator 3670886 rbsK 321314003827 rbsK Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar metabolism transcriptional regulator YP_218464.1 3669672 D 321314 CDS YP_218465.1 62182048 3670902..3671663 1 NC_006905.1 hypothetical protein 3671663 321314003828 SC3478 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218465.1 3670902 D 321314 CDS YP_218466.1 62182049 3671717..3672688 1 NC_006905.1 inner membrane protein 3672688 321314003829 SC3479 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218466.1 3671717 D 321314 CDS YP_218467.1 62182050 complement(3673764..3675506) 1 NC_006905.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase 3675506 ggt 321314003831 ggt Salmonella enterica subsp. enterica serovar Choleraesuis str. gamma-glutamyltranspeptidase YP_218467.1 3673764 R 321314 CDS YP_218468.1 62182051 3675632..3676048 1 NC_006905.1 hypothetical protein 3676048 yhhA 321314003832 yhhA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218468.1 3675632 D 321314 CDS YP_218469.1 62182052 complement(3676061..3676801) 1 NC_006905.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase 3676801 ugpQ 321314003833 ugpQ Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerophosphodiester phosphodiesterase YP_218469.1 3676061 R 321314 CDS YP_218470.1 62182053 complement(3676798..3677868) 1 NC_006905.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 3677868 ugpC 321314003834 ugpC Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol-3-phosphate transporter ATP-binding subunit YP_218470.1 3676798 R 321314 CDS YP_218471.1 62182054 complement(3677871..3678716) 1 NC_006905.1 with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein 3678716 ugpE 321314003835 ugpE Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol-3-phosphate transporter membrane protein YP_218471.1 3677871 R 321314 CDS YP_218472.1 62182055 complement(3678713..3679600) 1 NC_006905.1 with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease 3679600 ugpA 321314003836 ugpA Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol-3-phosphate transporter permease YP_218472.1 3678713 R 321314 CDS YP_218473.1 62182056 complement(3679705..3681021) 1 NC_006905.1 with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein 3681021 ugpB 321314003837 ugpB Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol-3-phosphate transporter periplasmic binding protein YP_218473.1 3679705 R 321314 CDS YP_218474.1 62182057 complement(3681280..3681648) 1 NC_006905.1 similar to death -on-curing protein of phage P; IPR006440: Death-on-curing family protein; hypothetical protein 3681648 doc 321314003838 doc Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218474.1 3681280 R 321314 CDS YP_218475.1 62182058 complement(3681645..3681866) 1 NC_006905.1 IPR003756: Protein of unknown function DUF172; IPR006442: Prevent-host-death family protein; hypothetical protein 3681866 yhhV 321314003839 yhhV Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218475.1 3681645 R 321314 CDS YP_218476.1 62182059 complement(3681997..3682710) 1 NC_006905.1 with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3682710 livF 321314003840 livF Salmonella enterica subsp. enterica serovar Choleraesuis str. leucine/isoleucine/valine transporter ATP-binding subunit YP_218476.1 3681997 R 321314 CDS YP_218477.1 62182060 complement(3682712..3683479) 1 NC_006905.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3683479 livG 321314003841 livG Salmonella enterica subsp. enterica serovar Choleraesuis str. leucine/isoleucine/valine transporter ATP-binding subunit YP_218477.1 3682712 R 321314 CDS YP_218478.1 62182061 complement(3683476..3684753) 1 NC_006905.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 3684753 livM 321314003842 livM Salmonella enterica subsp. enterica serovar Choleraesuis str. leucine/isoleucine/valine transporter permease subunit YP_218478.1 3683476 R 321314 CDS YP_218479.1 62182062 complement(3684750..3685676) 1 NC_006905.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH 3685676 livH 321314003843 livH Salmonella enterica subsp. enterica serovar Choleraesuis str. branched-chain amino acid transporter permease subunit LivH YP_218479.1 3684750 R 321314 CDS YP_218480.1 62182063 3687267..3687650 1 NC_006905.1 IPR000182: GCN5-related N-acetyltransferase; hypothetical protein 3687650 yhhK 321314003845 yhhK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218480.1 3687267 D 321314 CDS YP_218481.1 62182064 complement(3687647..3688165) 1 NC_006905.1 IPR000182: GCN5-related N-acetyltransferase; hypothetical protein 3688165 321314003846 SC3494 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218481.1 3687647 R 321314 CDS YP_218482.1 62182065 complement(3688169..3688438) 1 NC_006905.1 hypothetical protein 3688438 321314003847 SC3495 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218482.1 3688169 R 321314 CDS YP_218483.1 62182066 complement(3688616..3689776) 1 NC_006905.1 IPR000709: Leu/Ile/Val-binding protein family; IPR001828: Extracellular ligand-binding receptor; Leu/Ile/Val/Thr-binding protein 3689776 livJ 321314003848 livJ Salmonella enterica subsp. enterica serovar Choleraesuis str. Leu/Ile/Val/Thr-binding protein YP_218483.1 3688616 R 321314 CDS YP_218484.1 62182067 complement(3690041..3690895) 1 NC_006905.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 3690895 rpoH 321314003849 rpoH Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA polymerase factor sigma-32 YP_218484.1 3690041 R 321314 CDS YP_218485.1 62182068 complement(3691141..3692196) 1 NC_006905.1 ABC transporter membrane protein; cell division protein FtsX 3692196 ftsX 321314003850 ftsX Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein FtsX YP_218485.1 3691141 R 321314 CDS YP_218486.1 62182069 complement(3692189..3692785) 1 NC_006905.1 ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE 3692785 ftsE 321314003851 ftsE Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein FtsE YP_218486.1 3692189 R 321314 CDS YP_218487.1 62182070 complement(3692860..3694335) 1 NC_006905.1 signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY 3694335 ftsY 321314003852 ftsY Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein FtsY YP_218487.1 3692860 R 321314 CDS YP_218488.1 62182071 3694461..3695057 1 NC_006905.1 catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3695057 rsmD 321314003853 rsmD Salmonella enterica subsp. enterica serovar Choleraesuis str. 16S rRNA m(2)G966-methyltransferase YP_218488.1 3694461 D 321314 CDS YP_218489.1 62182072 3695047..3695316 1 NC_006905.1 hypothetical protein 3695316 yhhL 321314003854 yhhL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218489.1 3695047 D 321314 CDS YP_218490.1 62182073 complement(3695338..3695709) 1 NC_006905.1 hypothetical protein 3695709 yhhM 321314003855 yhhM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218490.1 3695338 R 321314 CDS YP_218491.1 62182074 3695851..3696477 1 NC_006905.1 hypothetical protein 3696477 yhhN 321314003856 yhhN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218491.1 3695851 D 321314 CDS YP_218492.1 62182075 3696558..3698756 1 NC_006905.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 3698756 zntA 321314003857 zntA Salmonella enterica subsp. enterica serovar Choleraesuis str. zinc/cadmium/mercury/lead-transporting ATPase YP_218492.1 3696558 D 321314 CDS YP_218493.1 62182076 3698956..3700599 1 NC_006905.1 IPR003122: Ligand binding Tar; IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer;IPR004090: Methyl-accepting chemotaxis protein;IPR004091: Aspartate chemoreceptor protein; methyl-accepting transmembrane citrate/phenol chemoreceptor 3700599 tcp 321314003858 tcp Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting transmembrane citrate/phenol chemoreceptor YP_218493.1 3698956 D 321314 CDS YP_218494.2 162139531 complement(3700623..3700868) 1 NC_006905.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 3700868 yhhP 321314003859 yhhP Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfur transfer protein SirA YP_218494.2 3700623 R 321314 CDS YP_218495.1 62182078 3701038..3701703 1 NC_006905.1 IPR003744: Protein of unknown function DUF165; hypothetical protein 3701703 yhhQ 321314003860 yhhQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218495.1 3701038 D 321314 CDS YP_218496.1 62182079 3701776..3702333 1 NC_006905.1 hypothetical protein 3702333 dcrB 321314003861 dcrB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218496.1 3701776 D 321314 CDS YP_218497.2 162139530 complement(3702337..3703554) 1 NC_006905.1 IPR007114: Major facilitator superfamily; major facilitator superfamily transporter 3703554 yhhS 321314003862 yhhS Salmonella enterica subsp. enterica serovar Choleraesuis str. major facilitator superfamily transporter YP_218497.2 3702337 R 321314 CDS YP_218498.1 62182081 3703686..3704735 1 NC_006905.1 IPR002549: Protein of unknown function UPF0118; PerM family permease 3704735 yhhT 321314003863 yhhT Salmonella enterica subsp. enterica serovar Choleraesuis str. PerM family permease YP_218498.1 3703686 D 321314 CDS YP_218499.1 62182082 3704787..3705365 1 NC_006905.1 IPR008278: 4'-phosphopantetheinyl transferase; holo-(acyl carrier protein) synthase 2 3705365 acpT 321314003864 acpT Salmonella enterica subsp. enterica serovar Choleraesuis str. holo-(acyl carrier protein) synthase 2 YP_218499.1 3704787 D 321314 CDS YP_218500.1 62182083 3705421..3705858 1 NC_006905.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3705858 nikR 321314003865 nikR Salmonella enterica subsp. enterica serovar Choleraesuis str. nickel responsive regulator YP_218500.1 3705421 D 321314 CDS YP_218501.1 62182084 complement(3705961..3707085) 1 NC_006905.1 IPR000412: ABC transporter family 2; ABC transporter ATP-binding protein 3707085 yhhJ 321314003866 yhhJ Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATP-binding protein YP_218501.1 3705961 R 321314 CDS YP_218502.1 62182085 complement(3707085..3709826) 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase; mtultidrug ABC transporter permease/ATPase 3709826 yhiH 321314003867 yhiH Salmonella enterica subsp. enterica serovar Choleraesuis str. mtultidrug ABC transporter permease/ATPase YP_218502.1 3707085 R 321314 CDS YP_218503.1 62182086 complement(3709883..3710815) 1 NC_006905.1 IPR003997: Gram-negative bacterial RTX secretion protein D; IPR006143: Secretion protein HlyD; hypothetical protein 3710815 yhiI 321314003868 yhiI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218503.1 3709883 R 321314 CDS YP_218504.1 62182087 complement(3711196..3712392) 1 NC_006905.1 IPR000205: NAD-binding site; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I; IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;IPR004792: HI0933-like protein; hypothetical protein 3712392 yhiN 321314003869 yhiN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218504.1 3711196 R 321314 CDS YP_218505.1 62182088 3712623..3714119 1 NC_006905.1 IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR001204: Phosphate transporter; PiT family, low-affinity phosphate transporter 3714119 pitA 321314003870 pitA Salmonella enterica subsp. enterica serovar Choleraesuis str. PiT family, low-affinity phosphate transporter YP_218505.1 3712623 D 321314 CDS YP_218506.1 62182089 complement(3714260..3714595) 1 NC_006905.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 3714595 uspB 321314003871 uspB Salmonella enterica subsp. enterica serovar Choleraesuis str. universal stress protein UspB YP_218506.1 3714260 R 321314 CDS YP_218507.1 62182090 3714983..3715417 1 NC_006905.1 IPR006016: Usp domain; universal stress protein A 3715417 uspA 321314003872 uspA Salmonella enterica subsp. enterica serovar Choleraesuis str. universal stress protein A YP_218507.1 3714983 D 321314 CDS YP_218508.1 62182091 3715742..3717214 1 NC_006905.1 member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3717214 yhiP 321314003873 yhiP Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane transporter YhiP YP_218508.1 3715742 D 321314 CDS YP_218509.1 62182092 complement(3717306..3718064) 1 NC_006905.1 predicted SAM-dependent methyltransferase; methyltransferase 3718064 yhiQ 321314003874 yhiQ Salmonella enterica subsp. enterica serovar Choleraesuis str. methyltransferase YP_218509.1 3717306 R 321314 CDS YP_218510.1 62182093 complement(3718071..3720113) 1 NC_006905.1 IPR001567: Peptidase M3; IPR006025: Neutral zinc metallopeptidases, zinc-binding site; oligopeptidase A 3720113 opdA 321314003875 opdA Salmonella enterica subsp. enterica serovar Choleraesuis str. oligopeptidase A YP_218510.1 3718071 R 321314 CDS YP_218511.1 62182094 complement(3720295..3721566) 1 NC_006905.1 IPR000326: PA-phosphatase related phosphoesterase; IPR001011: Bacterial acid phosphatase, class A; phosphatase 3721566 321314003876 SC3524 Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphatase YP_218511.1 3720295 R 321314 CDS YP_218512.1 62182095 3721777..3722619 1 NC_006905.1 IPR002052: N-6 Adenine-specific DNA methylase; IPR007473: Protein of unknown function DUF519; hypothetical protein 3722619 yhiR 321314003877 yhiR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218512.1 3721777 D 321314 CDS YP_218513.1 62182096 3722724..3724076 1 NC_006905.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3724076 gor 321314003878 gor Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione reductase YP_218513.1 3722724 D 321314 CDS YP_218514.1 62182097 complement(3724176..3725291) 1 NC_006905.1 IPR007114: Major facilitator superfamily; alpha-ketoglutarate permease 3725291 csbX 321314003879 csbX Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha-ketoglutarate permease YP_218514.1 3724176 R 321314 CDS YP_218515.1 62182098 complement(3725264..3725428) 1 NC_006905.1 alpha-ketoglutarate permease 3725428 321314003880 SC3528 Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha-ketoglutarate permease YP_218515.1 3725264 R 321314 CDS YP_218516.1 62182099 complement(3725471..3726424) 1 NC_006905.1 hypothetical protein 3726424 321314003881 SC3529 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218516.1 3725471 R 321314 CDS YP_218517.1 62182100 3726653..3727534 1 NC_006905.1 IPR000281: Helix-turn-helix protein RpiR; IPR001347: Sugar isomerase (SIS); protein rpiR 3727534 rpiR 321314003882 rpiR Salmonella enterica subsp. enterica serovar Choleraesuis str. protein rpiR YP_218517.1 3726653 D 321314 CDS YP_218518.1 62182101 3727648..3728466 1 NC_006905.1 IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; ribokinase 3728466 rbsK 321314003883 rbsK Salmonella enterica subsp. enterica serovar Choleraesuis str. ribokinase YP_218518.1 3727648 D 321314 CDS YP_218519.1 62182102 complement(3728555..3729598) 1 NC_006905.1 IPR004550: L-asparaginase, type II; IPR006034: Asparaginase/glutaminase; L-asparaginase 3729598 aspG 321314003884 aspG Salmonella enterica subsp. enterica serovar Choleraesuis str. L-asparaginase YP_218519.1 3728555 R 321314 CDS YP_218520.1 62182103 complement(3729657..3730976) 1 NC_006905.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 3730976 dcuB 321314003885 dcuB Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic C4-dicarboxylate transporter YP_218520.1 3729657 R 321314 CDS YP_218521.1 62182104 complement(3731030..3731875) 1 NC_006905.1 IPR002173: Carbohydrate kinase, PfkB; ribokinase family sugar kinase 3731875 yurL 321314003886 yurL Salmonella enterica subsp. enterica serovar Choleraesuis str. ribokinase family sugar kinase YP_218521.1 3731030 R 321314 CDS YP_218522.1 62182105 complement(3731939..3732913) 1 NC_006905.1 IPR001347: Sugar isomerase (SIS); phosphosugar isomerase 3732913 psi 321314003887 psi Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphosugar isomerase YP_218522.1 3731939 R 321314 CDS YP_218523.1 62182106 complement(3733092..3733811) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 3733811 yurK 321314003888 yurK Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_218523.1 3733092 R 321314 CDS YP_218524.1 62182107 3734137..3735786 1 NC_006905.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3735786 treF 321314003889 treF Salmonella enterica subsp. enterica serovar Choleraesuis str. trehalase YP_218524.1 3734137 D 321314 CDS YP_218525.1 62182108 complement(3735799..3737388) 1 NC_006905.1 hypothetical protein 3737388 321314003890 SC3538 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218525.1 3735799 R 321314 CDS YP_218526.1 62182109 3737669..3738025 1 NC_006905.1 phage endolysin 3738025 321314003891 SC3539 Salmonella enterica subsp. enterica serovar Choleraesuis str. phage endolysin YP_218526.1 3737669 D 321314 CDS YP_218527.1 62182110 complement(3738031..3738588) 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; LuxR family transcriptional regulator 3738588 yhjB 321314003892 yhjB Salmonella enterica subsp. enterica serovar Choleraesuis str. LuxR family transcriptional regulator YP_218527.1 3738031 R 321314 CDS YP_218528.1 62182111 complement(3738634..3739842) 1 NC_006905.1 IPR002559: Transposase, IS4; transposase of Tn10 3739842 TnpR 321314003893 TnpR Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase of Tn10 YP_218528.1 3738634 R 321314 CDS YP_218529.1 62182112 3741574..3742602 1 NC_006905.1 IPR004664: Ribonuclease BN; IPR005274: Conserved hypothetical protein 766; hypothetical protein 3742602 yhjD 321314003895 yhjD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218529.1 3741574 D 321314 CDS YP_218530.1 62182113 3742953..3744275 1 NC_006905.1 IPR000911: Ribosomal protein L11; IPR004736: Citrate-proton symport; IPR005828: General substrate transporter;IPR005829: Sugar transporter superfamily;IPR007114: Major facilitator superfamily; MFS family transporter 3744275 yhjE 321314003896 yhjE Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter YP_218530.1 3742953 D 321314 CDS YP_218531.1 62182114 complement(3744315..3746375) 1 NC_006905.1 IPR007844: AsmA; hypothetical protein 3746375 yhjG 321314003897 yhjG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218531.1 3744315 R 321314 CDS YP_218532.1 62182115 complement(3746485..3747252) 1 NC_006905.1 in Escherichia coli this protein is involved in flagellar function; diguanylate phosphodiesterase 3747252 yhjH 321314003898 yhjH Salmonella enterica subsp. enterica serovar Choleraesuis str. diguanylate phosphodiesterase YP_218532.1 3746485 R 321314 CDS YP_218533.1 62182116 3747481..3748410 1 NC_006905.1 IPR002173: Carbohydrate kinase, PfkB; ketodeoxygluconokinase 3748410 kdgK 321314003899 kdgK Salmonella enterica subsp. enterica serovar Choleraesuis str. ketodeoxygluconokinase YP_218533.1 3747481 D 321314 CDS YP_218534.1 62182117 complement(3748464..3749951) 1 NC_006905.1 IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR001431: Peptidase M16, insulinase-like; IPR007863: Peptidase M16 inactive; Zn-dependent peptidase 3749951 yhjJ 321314003900 yhjJ Salmonella enterica subsp. enterica serovar Choleraesuis str. Zn-dependent peptidase YP_218534.1 3748464 R 321314 CDS YP_218535.1 62182118 complement(3750171..3751457) 1 NC_006905.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3751457 dctA 321314003901 dctA Salmonella enterica subsp. enterica serovar Choleraesuis str. C4-dicarboxylate transporter DctA YP_218535.1 3750171 R 321314 CDS YP_218536.1 62182119 complement(3751615..3753588) 1 NC_006905.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli; phosphodiesterase 3753588 yhjK 321314003902 yhjK Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphodiesterase YP_218536.1 3751615 R 321314 CDS YP_218537.1 62182120 complement(3753795..3757337) 1 NC_006905.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 3757337 yhjL 321314003903 yhjL Salmonella enterica subsp. enterica serovar Choleraesuis str. cellulose synthase subunit BcsC YP_218537.1 3753795 R 321314 CDS YP_218538.1 62182121 complement(3757319..3757615) 1 NC_006905.1 endo-1,4-D-glucanase 3757615 321314003904 SC3551 Salmonella enterica subsp. enterica serovar Choleraesuis str. endo-1,4-D-glucanase YP_218538.1 3757319 R 321314 CDS YP_218539.1 62182122 3757646..3758905 1 NC_006905.1 hypothetical protein 3758905 yhjU 321314003905 yhjU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218539.1 3757646 D 321314 CDS YP_218540.1 62182123 complement(3758987..3759118) 1 NC_006905.1 hypothetical protein 3759118 321314003906 SC3553 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218540.1 3758987 R 321314 CDS YP_218541.1 62182124 3759222..3759377 1 NC_006905.1 hypothetical protein 3759377 321314003907 SC3554 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218541.1 3759222 D 321314 CDS YP_218542.1 62182125 3759468..3759608 1 NC_006905.1 cystathionine gamma-synthase 3759608 321314003908 SC3555 Salmonella enterica subsp. enterica serovar Choleraesuis str. cystathionine gamma-synthase YP_218542.1 3759468 D 321314 CDS YP_218543.1 62182126 3759690..3761024 1 NC_006905.1 IPR001220: Legume lectin, beta domain; IPR002422: Amino acid/polyamine transporter family II; IPR002453: Beta tubulin; HAAAP family transport protein 3761024 yhjV 321314003909 yhjV Salmonella enterica subsp. enterica serovar Choleraesuis str. HAAAP family transport protein YP_218543.1 3759690 D 321314 CDS YP_218544.1 62182127 complement(3761125..3762138) 1 NC_006905.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 3762138 dppF 321314003910 dppF Salmonella enterica subsp. enterica serovar Choleraesuis str. dipeptide transporter ATP-binding subunit YP_218544.1 3761125 R 321314 CDS YP_218545.1 62182128 complement(3762135..3763118) 1 NC_006905.1 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit 3763118 dppD 321314003911 dppD Salmonella enterica subsp. enterica serovar Choleraesuis str. dipeptide transporter ATP-binding subunit YP_218545.1 3762135 R 321314 CDS YP_218546.1 62182129 complement(3763129..3764031) 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; dipeptide transporter 3764031 dppC 321314003912 dppC Salmonella enterica subsp. enterica serovar Choleraesuis str. dipeptide transporter YP_218546.1 3763129 R 321314 CDS YP_218547.1 62182130 complement(3764041..3765060) 1 NC_006905.1 transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB 3765060 dppB 321314003913 dppB Salmonella enterica subsp. enterica serovar Choleraesuis str. dipeptide transporter permease DppB YP_218547.1 3764041 R 321314 CDS YP_218548.1 62182131 complement(3765217..3766824) 1 NC_006905.1 IPR000914: Bacterial extracellular solute-binding protein, family 5; peptide ABC transporter permease 3766824 dppA 321314003914 dppA Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide ABC transporter permease YP_218548.1 3765217 R 321314 CDS YP_218549.1 62182132 complement(3767380..3768705) 1 NC_006905.1 IPR006043: Xanthine/uracil/vitamin C permease family; xanthine permease 3768705 pucJ 321314003915 pucJ Salmonella enterica subsp. enterica serovar Choleraesuis str. xanthine permease YP_218549.1 3767380 R 321314 CDS YP_218550.1 62182133 complement(3768763..3769887) 1 NC_006905.1 PQQ repeat-containing protein 3769887 321314003916 SC3563 Salmonella enterica subsp. enterica serovar Choleraesuis str. PQQ repeat-containing protein YP_218550.1 3768763 R 321314 CDS YP_218551.1 62182134 complement(3769875..3770087) 1 NC_006905.1 hypothetical protein 3770087 321314003917 SC3564 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218551.1 3769875 R 321314 CDS YP_218552.1 62182135 3769909..3770070 1 NC_006905.1 hypothetical protein 3770070 321314003918 SC3565 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218552.1 3769909 D 321314 CDS YP_218553.1 62182136 3770037..3771044 1 NC_006905.1 IPR000843: Bacterial regulatory protein LacI, HTH motif; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; LacI family regulatory protein 3771044 celR 321314003919 celR Salmonella enterica subsp. enterica serovar Choleraesuis str. LacI family regulatory protein YP_218553.1 3770037 D 321314 CDS YP_218554.2 162139529 complement(3771357..3773048) 1 NC_006905.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase 3773048 yhjW 321314003921 yhjW Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoethanolamine transferase YP_218554.2 3771357 R 321314 CDS YP_218555.1 62182138 complement(3773266..3773793) 1 NC_006905.1 IPR000259: Fimbrial protein; long polar fimbrial minor protein 3773793 lpfE 321314003922 lpfE Salmonella enterica subsp. enterica serovar Choleraesuis str. long polar fimbrial minor protein YP_218555.1 3773266 R 321314 CDS YP_218556.1 62182139 complement(3773799..3774878) 1 NC_006905.1 IPR000259: Fimbrial protein; long polar fimbrial operon protein 3774878 lpfD 321314003923 lpfD Salmonella enterica subsp. enterica serovar Choleraesuis str. long polar fimbrial operon protein YP_218556.1 3773799 R 321314 CDS YP_218557.1 62182140 complement(3777447..3778145) 1 NC_006905.1 IPR001829: Bacterial pili assembly chaperone; long polar fimbrial chaperone 3778145 lpfB 321314003925 lpfB Salmonella enterica subsp. enterica serovar Choleraesuis str. long polar fimbrial chaperone YP_218557.1 3777447 R 321314 CDS YP_218558.1 62182141 complement(3778230..3778766) 1 NC_006905.1 IPR000259: Fimbrial protein; long polar fimbria 3778766 lpfA 321314003926 lpfA Salmonella enterica subsp. enterica serovar Choleraesuis str. long polar fimbria YP_218558.1 3778230 R 321314 CDS YP_218559.1 62182142 complement(3779114..3779218) 1 NC_006905.1 hypothetical protein 3779218 yhjX 321314003927 yhjX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218559.1 3779114 R 321314 CDS YP_218560.1 62182143 complement(3779272..3779976) 1 NC_006905.1 hypothetical protein 3779976 yhjY 321314003928 yhjY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218560.1 3779272 R 321314 CDS YP_218561.1 62182144 3780133..3780714 1 NC_006905.1 constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyladenine DNA glycosylase 3780714 tag 321314003929 tag Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-methyladenine DNA glycosylase YP_218561.1 3780133 D 321314 CDS YP_218562.1 62182145 3780692..3781132 1 NC_006905.1 IPR000182: GCN5-related N-acetyltransferase; hypothetical protein 3781132 yiaC 321314003930 yiaC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218562.1 3780692 D 321314 CDS YP_218563.1 62182146 complement(3781101..3783434) 1 NC_006905.1 IPR006655: Prokaryotic molybdopterin oxidoreductase; IPR006656: Molybdopterin oxidoreductase; IPR006657: Molydopterin dinucleotide binding domain;IPR006658: Molybdopterin guanine dinucleotide-containing S/N-oxide reductase; biotin sulfoxide reductase 3783434 321314003931 SC3576 Salmonella enterica subsp. enterica serovar Choleraesuis str. biotin sulfoxide reductase YP_218563.1 3781101 R 321314 CDS YP_218564.1 62182147 3783587..3784249 1 NC_006905.1 IPR001035: MotY protein; IPR006664: Bacterial outer membrane protein; IPR006665: OmpA/MotB domain;IPR006690: OmpA-like domain; outer membrane lipoprotein 3784249 yiaD 321314003932 yiaD Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_218564.1 3783587 D 321314 CDS YP_218565.1 62182148 3784468..3785442 1 NC_006905.1 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 3785442 yiaE 321314003933 yiaE Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-hydroxyacid dehydrogenase YP_218565.1 3784468 D 321314 CDS YP_218566.1 62182149 complement(3785492..3786202) 1 NC_006905.1 hypothetical protein 3786202 yiaF 321314003934 yiaF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218566.1 3785492 R 321314 CDS YP_218567.1 62182150 3786641..3786931 1 NC_006905.1 transcriptional regulator 3786931 yiaG 321314003935 yiaG Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_218567.1 3786641 D 321314 CDS YP_218568.1 62182151 3787219..3787431 1 NC_006905.1 IPR002059: Cold-shock DNA-binding domain; cold-shock protein 3787431 cspA 321314003936 cspA Salmonella enterica subsp. enterica serovar Choleraesuis str. cold-shock protein YP_218568.1 3787219 D 321314 CDS YP_218569.1 62182152 3787605..3788144 1 NC_006905.1 hypothetical protein 3788144 321314003937 SC3582 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218569.1 3787605 D 321314 CDS YP_218570.1 62182153 3788396..3788797 1 NC_006905.1 hypothetical protein 3788797 321314003938 SC3583 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218570.1 3788396 D 321314 CDS YP_218571.1 62182154 3788968..3789651 1 NC_006905.1 IPR001584: Integrase, catalytic domain; integrase 3789651 yis2 321314003939 yis2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_218571.1 3788968 D 321314 CDS YP_218572.1 62182155 complement(3789830..3790315) 1 NC_006905.1 acetyltransferase 3790315 321314003940 SC3585 Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyltransferase YP_218572.1 3789830 R 321314 CDS YP_218573.1 62182156 complement(3790303..3790590) 1 NC_006905.1 hypothetical protein 3790590 321314003941 SC3586 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218573.1 3790303 R 321314 CDS YP_218574.1 62182157 complement(3790768..3791235) 1 NC_006905.1 IPR000182: GCN5-related N-acetyltransferase; acetyltransferase 3791235 yafP 321314003942 yafP Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyltransferase YP_218574.1 3790768 R 321314 CDS YP_218575.1 62182158 complement(3791407..3791598) 1 NC_006905.1 transposase insK for insertion sequence e 3791598 insK 321314003943 insK Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase insK for insertion sequence e YP_218575.1 3791407 R 321314 CDS YP_218576.1 62182159 complement(3792031..3793239) 1 NC_006905.1 IPR002559: Transposase, IS4; transposase of Tn10 3793239 tnp 321314003944 tnp Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase of Tn10 YP_218576.1 3792031 R 321314 CDS YP_218577.1 62182160 complement(3793408..3795477) 1 NC_006905.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 3795477 glyS 321314003945 glyS Salmonella enterica subsp. enterica serovar Choleraesuis str. glycyl-tRNA synthetase subunit beta YP_218577.1 3793408 R 321314 CDS YP_218578.1 62182161 complement(3795487..3796398) 1 NC_006905.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 3796398 glyQ 321314003946 glyQ Salmonella enterica subsp. enterica serovar Choleraesuis str. glycyl-tRNA synthetase subunit alpha YP_218578.1 3795487 R 321314 CDS YP_218579.1 62182162 complement(3796537..3796839) 1 NC_006905.1 outer membrane lipoprotein 3796839 321314003947 SC3592 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_218579.1 3796537 R 321314 CDS YP_218580.1 62182163 3797005..3798000 1 NC_006905.1 IPR002656: Acyltransferase 3 family; inner membrane protein 3798000 yiaH 321314003948 yiaH Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218580.1 3797005 D 321314 CDS YP_218581.1 62182164 complement(3798023..3798376) 1 NC_006905.1 IPR008024: YiaAB two helix; hypothetical protein 3798376 yiaB 321314003949 yiaB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218581.1 3798023 R 321314 CDS YP_218582.1 62182165 complement(3798551..3800005) 1 NC_006905.1 IPR000577: Carbohydrate kinase, FGGY; IPR006000: Xylulokinase; xylulokinase 3800005 xylB 321314003950 xylB Salmonella enterica subsp. enterica serovar Choleraesuis str. xylulokinase YP_218582.1 3798551 R 321314 CDS YP_218583.1 62182166 complement(3800105..3801427) 1 NC_006905.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 3801427 xylA 321314003951 xylA Salmonella enterica subsp. enterica serovar Choleraesuis str. xylose isomerase YP_218583.1 3800105 R 321314 CDS YP_218584.1 62182167 3801790..3802968 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; xylose operon regulatory protein 3802968 xylR 321314003952 xylR Salmonella enterica subsp. enterica serovar Choleraesuis str. xylose operon regulatory protein YP_218584.1 3801790 D 321314 CDS YP_218585.1 62182168 complement(3803029..3803853) 1 NC_006905.1 IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; hypothetical protein 3803853 bax 321314003953 bax Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218585.1 3803029 R 321314 CDS YP_218586.1 62182169 3804169..3804891 1 NC_006905.1 alpha-amylase 3804891 malS 321314003954 malS Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha-amylase YP_218586.1 3804169 D 321314 CDS YP_218587.1 62182170 3804768..3804989 1 NC_006905.1 L-xylulose kinase, cryptic 3804989 lyxK 321314003955 lyxK Salmonella enterica subsp. enterica serovar Choleraesuis str. L-xylulose kinase, cryptic YP_218587.1 3804768 D 321314 CDS YP_218588.1 62182171 3804986..3805648 1 NC_006905.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3805648 sgbH 321314003956 sgbH Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-keto-L-gulonate-6-phosphate decarboxylase YP_218588.1 3804986 D 321314 CDS YP_218589.1 62182172 3805641..3806501 1 NC_006905.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase 3806501 sgbU 321314003957 sgbU Salmonella enterica subsp. enterica serovar Choleraesuis str. L-xylulose 5-phosphate 3-epimerase YP_218589.1 3805641 D 321314 CDS YP_218590.1 62182173 complement(3807351..3808166) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; IPR003313: Arac protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 3808166 yisR 321314003959 yisR Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_218590.1 3807351 R 321314 CDS YP_218591.1 62182174 complement(3810559..3812097) 1 NC_006905.1 IPR002086: Aldehyde dehydrogenase; aldehyde dehydrogenase 3812097 aldB 321314003961 aldB Salmonella enterica subsp. enterica serovar Choleraesuis str. aldehyde dehydrogenase YP_218591.1 3810559 R 321314 CDS YP_218592.1 62182175 3812266..3813147 1 NC_006905.1 IPR000600: ROK family; transcriptional regulator 3813147 321314003962 SC3605 Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_218592.1 3812266 D 321314 CDS YP_218593.1 62182176 complement(3813395..3815245) 1 NC_006905.1 IPR000795: Elongation factor, GTP-binding; IPR004161: Elongation factor Tu, domain 2; IPR004535: Translation elongation factor, selenocysteine-specific; selenocysteinyl-tRNA-specific translation factor 3815245 selB 321314003963 selB Salmonella enterica subsp. enterica serovar Choleraesuis str. selenocysteinyl-tRNA-specific translation factor YP_218593.1 3813395 R 321314 CDS YP_218594.1 62182177 complement(3815242..3816633) 1 NC_006905.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 3816633 selA 321314003964 selA Salmonella enterica subsp. enterica serovar Choleraesuis str. selenocysteine synthase YP_218594.1 3815242 R 321314 CDS YP_218595.1 62182178 complement(3816732..3817340) 1 NC_006905.1 IPR004045: Glutathione S-transferase, N-terminal; IPR004046: Glutathione S-transferase, C-terminal; glutathione S-transferase 3817340 yibF 321314003965 yibF Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione S-transferase YP_218595.1 3816732 R 321314 CDS YP_218596.1 62182179 3817816..3819732 1 NC_006905.1 IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; IPR003352: Phosphotransferase system, EIIC; IPR003501: Phosphotransferase system, lactose/cellobiose-specific IIB subunit;IPR004718: PTS system mannitol-specific enzyme IIC; PTS family, mannitol-specific enzyme IIABC components 3819732 mtlA 321314003966 mtlA Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS family, mannitol-specific enzyme IIABC components YP_218596.1 3817816 D 321314 CDS YP_218597.1 62182180 3819938..3821101 1 NC_006905.1 IPR000669: Mannitol dehydrogenase; mannitol-1-phosphate 5-dehydrogenase 3821101 mtlD 321314003967 mtlD Salmonella enterica subsp. enterica serovar Choleraesuis str. mannitol-1-phosphate 5-dehydrogenase YP_218597.1 3819938 D 321314 CDS YP_218598.1 62182181 3821098..3821688 1 NC_006905.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 3821688 mtlR 321314003968 mtlR Salmonella enterica subsp. enterica serovar Choleraesuis str. mannitol repressor protein YP_218598.1 3821098 D 321314 CDS YP_218599.1 62182182 complement(3821698..3821907) 1 NC_006905.1 hypothetical protein 3821907 321314003969 SC3612 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218599.1 3821698 R 321314 CDS YP_218600.1 62182183 3822198..3822560 1 NC_006905.1 hypothetical protein 3822560 yibL 321314003970 yibL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218600.1 3822198 D 321314 CDS YP_218601.1 62182184 3823048..3823731 1 NC_006905.1 inner membrane lipoprotein 3823731 321314003971 SC3614 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane lipoprotein YP_218601.1 3823048 D 321314 CDS YP_218602.1 62182185 3823775..3828115 1 NC_006905.1 IPR005594: YadA-like, C-terminal; IPR008635: Haemagluttinin motif; IPR008640: Hep_Hag; inner membrane protein 3828115 dspP 321314003972 dspP Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218602.1 3823775 D 321314 CDS YP_218603.1 62182186 3828414..3830069 1 NC_006905.1 IPR003804: L-lactate permease; L-lactate permease 3830069 lldP 321314003973 lldP Salmonella enterica subsp. enterica serovar Choleraesuis str. L-lactate permease YP_218603.1 3828414 D 321314 CDS YP_218604.1 62182187 3830066..3830773 1 NC_006905.1 represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3830773 lldR 321314003974 lldR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional repressor LldR YP_218604.1 3830066 D 321314 CDS YP_218605.1 62182188 3830839..3832029 1 NC_006905.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3832029 lldD 321314003975 lldD Salmonella enterica subsp. enterica serovar Choleraesuis str. L-lactate dehydrogenase YP_218605.1 3830839 D 321314 CDS YP_218606.1 62182189 3832094..3832567 1 NC_006905.1 member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA/rRNA methyltransferase YibK 3832567 yibK 321314003976 yibK Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA/rRNA methyltransferase YibK YP_218606.1 3832094 D 321314 CDS YP_218607.1 62182190 complement(3832635..3833690) 1 NC_006905.1 IPR000843: Bacterial regulatory protein LacI, HTH motif; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; transcriptional regulator 3833690 lacI 321314003977 lacI Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_218607.1 3832635 R 321314 CDS YP_218608.1 62182191 3833958..3835154 1 NC_006905.1 IPR001354: Mandelate racemase/muconate lactonizing enzyme; mandelate racemase 3835154 yin 321314003978 yin Salmonella enterica subsp. enterica serovar Choleraesuis str. mandelate racemase YP_218608.1 3833958 D 321314 CDS YP_218609.1 62182192 complement(3836621..3837442) 1 NC_006905.1 catalyzes the O-acetylation of serine; serine acetyltransferase 3837442 cysE 321314003980 cysE Salmonella enterica subsp. enterica serovar Choleraesuis str. serine acetyltransferase YP_218609.1 3836621 R 321314 CDS YP_218610.1 62182193 complement(3837520..3838539) 1 NC_006905.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3838539 gpsA 321314003981 gpsA Salmonella enterica subsp. enterica serovar Choleraesuis str. NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_218610.1 3837520 R 321314 CDS YP_218611.1 62182194 complement(3838539..3839006) 1 NC_006905.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 3839006 secB 321314003982 secB Salmonella enterica subsp. enterica serovar Choleraesuis str. preprotein translocase subunit SecB YP_218611.1 3838539 R 321314 CDS YP_218612.1 62182195 complement(3839050..3839301) 1 NC_006905.1 IPR002109: Glutaredoxin; glutaredoxin 3 3839301 grxC 321314003983 grxC Salmonella enterica subsp. enterica serovar Choleraesuis str. glutaredoxin 3 YP_218612.1 3839050 R 321314 CDS YP_218613.1 62182196 complement(3839387..3839818) 1 NC_006905.1 IPR001763: Rhodanese-like; rhodanese-related sulfurtransferase 3839818 yibN 321314003984 yibN Salmonella enterica subsp. enterica serovar Choleraesuis str. rhodanese-related sulfurtransferase YP_218613.1 3839387 R 321314 CDS YP_218614.1 62182197 3840066..3841610 1 NC_006905.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3841610 pmgI 321314003985 pmgI Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglyceromutase YP_218614.1 3840066 D 321314 CDS YP_218615.1 62182198 3841620..3842903 1 NC_006905.1 IPR002886: Peptidase M23/M37; hypothetical protein 3842903 yibP 321314003986 yibP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218615.1 3841620 D 321314 CDS YP_218616.1 62182199 3842907..3843869 1 NC_006905.1 hypothetical protein 3843869 yigQ 321314003987 yigQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218616.1 3842907 D 321314 CDS YP_218617.1 62182200 complement(3843856..3844818) 1 NC_006905.1 IPR001173: Glycosyl transferase, family 2; glycosyl transferase family protein 3844818 yibD 321314003988 yibD Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl transferase family protein YP_218617.1 3843856 R 321314 CDS YP_218618.1 62182201 complement(3845183..3846208) 1 NC_006905.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 3846208 tdh 321314003989 tdh Salmonella enterica subsp. enterica serovar Choleraesuis str. L-threonine 3-dehydrogenase YP_218618.1 3845183 R 321314 CDS YP_218619.1 62182202 complement(3846218..3847414) 1 NC_006905.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase 3847414 kbl 321314003990 kbl Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-amino-3-ketobutyrate CoA ligase YP_218619.1 3846218 R 321314 CDS YP_218620.1 62182203 3847617..3848549 1 NC_006905.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3848549 rfaD 321314003991 rfaD Salmonella enterica subsp. enterica serovar Choleraesuis str. ADP-L-glycero-D-manno-heptose-6-epimerase YP_218620.1 3847617 D 321314 CDS YP_218621.1 62182204 3848552..3849598 1 NC_006905.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3849598 rfaF 321314003992 rfaF Salmonella enterica subsp. enterica serovar Choleraesuis str. ADP-heptose--LPS heptosyltransferase YP_218621.1 3848552 D 321314 CDS YP_218622.1 62182205 3849598..3850551 1 NC_006905.1 IPR000669: Mannitol dehydrogenase; ADP-heptose--LPS heptosyltransferase 3850551 rfaC 321314003993 rfaC Salmonella enterica subsp. enterica serovar Choleraesuis str. ADP-heptose--LPS heptosyltransferase YP_218622.1 3849598 D 321314 CDS YP_218623.1 62182206 3850591..3851805 1 NC_006905.1 hypothetical protein 3851805 WaaL 321314003994 WaaL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218623.1 3850591 D 321314 CDS YP_218624.1 62182207 complement(3851863..3853008) 1 NC_006905.1 hexose transferase, lipopolysaccharide core biosynthesis 3853008 rfaK 321314003995 rfaK Salmonella enterica subsp. enterica serovar Choleraesuis str. hexose transferase, lipopolysaccharide core biosynthesis YP_218624.1 3851863 R 321314 CDS YP_218625.1 62182208 complement(3853108..3853917) 1 NC_006905.1 lipopolysaccharide core biosynthesis protein 3853917 rfaZ 321314003996 rfaZ Salmonella enterica subsp. enterica serovar Choleraesuis str. lipopolysaccharide core biosynthesis protein YP_218625.1 3853108 R 321314 CDS YP_218626.1 62182209 complement(3854067..3854765) 1 NC_006905.1 lipopolysaccharide core biosynthesis protein 3854765 rfaY 321314003997 rfaY Salmonella enterica subsp. enterica serovar Choleraesuis str. lipopolysaccharide core biosynthesis protein YP_218626.1 3854067 R 321314 CDS YP_218627.1 62182210 complement(3854788..3855798) 1 NC_006905.1 IPR000531: TonB-dependent receptor protein; UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase 3855798 rfaJ 321314003998 rfaJ Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase YP_218627.1 3854788 R 321314 CDS YP_218628.1 62182211 complement(3855816..3856829) 1 NC_006905.1 IPR002495: Glycosyl transferase, family 8; UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase 3856829 rfaI 321314003999 rfaI Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase YP_218628.1 3855816 R 321314 CDS YP_218629.1 62182212 complement(3856835..3857914) 1 NC_006905.1 UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 3857914 rfaB 321314004000 rfaB Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_218629.1 3856835 R 321314 CDS YP_218630.1 62182213 complement(3857984..3858217) 1 NC_006905.1 inner membrane protein 3858217 yibR 321314004001 yibR Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218630.1 3857984 R 321314 CDS YP_218631.1 62182214 complement(3858249..3859046) 1 NC_006905.1 lipopolysaccharide core biosynthesis; phosphorylation of core heptose 3859046 rfaP 321314004002 rfaP Salmonella enterica subsp. enterica serovar Choleraesuis str. lipopolysaccharide core biosynthesis; phosphorylation of core heptose YP_218631.1 3858249 R 321314 CDS YP_218632.1 62182215 complement(3859039..3860163) 1 NC_006905.1 IPR001064: Beta and gamma crystallin; glucosyltransferase I 3860163 rfaG 321314004003 rfaG Salmonella enterica subsp. enterica serovar Choleraesuis str. glucosyltransferase I YP_218632.1 3859039 R 321314 CDS YP_218633.1 62182216 complement(3860160..3861230) 1 NC_006905.1 lipopolysaccharide core biosynthesis protein 3861230 rfaQ 321314004004 rfaQ Salmonella enterica subsp. enterica serovar Choleraesuis str. lipopolysaccharide core biosynthesis protein YP_218633.1 3860160 R 321314 CDS YP_218634.1 62182217 3861639..3862916 1 NC_006905.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3862916 kdtA 321314004005 kdtA Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-deoxy-D-manno-octulosonic-acid transferase YP_218634.1 3861639 D 321314 CDS YP_218635.1 62182218 3862925..3863404 1 NC_006905.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3863404 coaD 321314004006 coaD Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphopantetheine adenylyltransferase YP_218635.1 3862925 D 321314 CDS YP_218636.1 62182219 complement(3863431..3864240) 1 NC_006905.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3864240 mutM 321314004007 mutM Salmonella enterica subsp. enterica serovar Choleraesuis str. formamidopyrimidine-DNA glycosylase YP_218636.1 3863431 R 321314 CDS YP_218637.1 62182220 complement(3864338..3864505) 1 NC_006905.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3864505 rpmG 321314004008 rpmG Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L33 YP_218637.1 3864338 R 321314 CDS YP_218638.1 62182221 complement(3864526..3864762) 1 NC_006905.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3864762 rpmB 321314004009 rpmB Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L28 YP_218638.1 3864526 R 321314 CDS YP_218639.1 62182222 complement(3864980..3865645) 1 NC_006905.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3865645 radC 321314004010 radC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA repair protein RadC YP_218639.1 3864980 R 321314 CDS YP_218640.2 162139528 3865821..3867041 1 NC_006905.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3867041 dfp 321314004011 dfp Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_218640.2 3865821 D 321314 CDS YP_218641.1 62182224 3867019..3867477 1 NC_006905.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3867477 dut 321314004012 dut Salmonella enterica subsp. enterica serovar Choleraesuis str. deoxyuridine 5'-triphosphate nucleotidohydrolase YP_218641.1 3867019 D 321314 CDS YP_218642.1 62182225 3867585..3868181 1 NC_006905.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3868181 slmA 321314004013 slmA Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleoid occlusion protein YP_218642.1 3867585 D 321314 CDS YP_218643.1 62182226 complement(3868259..3868900) 1 NC_006905.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3868900 pyrE 321314004014 pyrE Salmonella enterica subsp. enterica serovar Choleraesuis str. orotate phosphoribosyltransferase YP_218643.1 3868259 R 321314 CDS YP_218644.1 62182227 complement(3868979..3869695) 1 NC_006905.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3869695 rph 321314004015 rph Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease PH YP_218644.1 3868979 R 321314 CDS YP_218645.1 62182228 3869821..3870684 1 NC_006905.1 hypothetical protein 3870684 yicC 321314004016 yicC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218645.1 3869821 D 321314 CDS YP_218646.1 62182229 complement(3870734..3871636) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 3871636 nahR 321314004017 nahR Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_218646.1 3870734 R 321314 CDS YP_218647.1 62182230 3871710..3872591 1 NC_006905.1 Zn-dependent hydrolase 3872591 321314004018 SC3660 Salmonella enterica subsp. enterica serovar Choleraesuis str. Zn-dependent hydrolase YP_218647.1 3871710 D 321314 CDS YP_218648.1 62182231 3872842..3873459 1 NC_006905.1 hypothetical protein 3873459 yigC 321314004019 yigC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218648.1 3872842 D 321314 CDS YP_218649.2 162139527 complement(3873456..3875141) 1 NC_006905.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 3875141 ligB 321314004020 ligB Salmonella enterica subsp. enterica serovar Choleraesuis str. NAD-dependent DNA ligase LigB YP_218649.2 3873456 R 321314 CDS YP_218651.1 62182234 3875311..3876021 1 NC_006905.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3876021 gmk 321314004021 gmk Salmonella enterica subsp. enterica serovar Choleraesuis str. guanylate kinase YP_218651.1 3875311 D 321314 CDS YP_218652.1 62182235 3876076..3876351 1 NC_006905.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3876351 rpoZ 321314004022 rpoZ Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-directed RNA polymerase subunit omega YP_218652.1 3876076 D 321314 CDS YP_218653.1 62182236 3876370..3878481 1 NC_006905.1 bifunctional; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3878481 spoT 321314004023 spoT Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_218653.1 3876370 D 321314 CDS YP_218654.1 62182237 3878486..3879175 1 NC_006905.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3879175 spoU 321314004024 spoU Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA guanosine-2'-O-methyltransferase YP_218654.1 3878486 D 321314 CDS YP_218655.1 62182238 3879181..3881262 1 NC_006905.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3881262 recG 321314004025 recG Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent DNA helicase RecG YP_218655.1 3879181 D 321314 CDS YP_218656.1 62182239 complement(3881265..3882116) 1 NC_006905.1 hypothetical protein 3882116 321314004026 SC3669 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218656.1 3881265 R 321314 CDS YP_218657.1 62182240 complement(3882119..3883324) 1 NC_006905.1 IPR004445: Sodium/glutamate symporter; GltS family glutamate transport protein 3883324 gltS 321314004027 gltS Salmonella enterica subsp. enterica serovar Choleraesuis str. GltS family glutamate transport protein YP_218657.1 3882119 R 321314 CDS YP_218658.1 62182241 3883552..3884943 1 NC_006905.1 IPR006042: Xanthine/uracil permease family; NCS2 family, purine/xanthine transport protein 3884943 yicE 321314004028 yicE Salmonella enterica subsp. enterica serovar Choleraesuis str. NCS2 family, purine/xanthine transport protein YP_218658.1 3883552 D 321314 CDS YP_218659.1 62182242 3885064..3886773 1 NC_006905.1 hypothetical protein 3886773 yicH 321314004029 yicH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218659.1 3885064 D 321314 CDS YP_218660.1 62182243 complement(3886876..3889194) 1 NC_006905.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase 3889194 yicI 321314004030 yicI Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha-xylosidase YP_218660.1 3886876 R 321314 CDS YP_218661.2 162139526 complement(3889206..3890591) 1 NC_006905.1 may be involved in the transport of galactosides-pentoses-hexuronides; transporter 3890591 yicJ 321314004031 yicJ Salmonella enterica subsp. enterica serovar Choleraesuis str. transporter YP_218661.2 3889206 R 321314 CDS YP_218662.1 62182245 complement(3890842..3891348) 1 NC_006905.1 IPR002197: Helix-turn-helix, Fis-type; transposase 3891348 321314004032 SC3675 Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_218662.1 3890842 R 321314 CDS YP_218663.1 62182246 3891729..3891887 1 NC_006905.1 transposase 3891887 tnpA 321314004034 tnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase YP_218663.1 3891729 D 321314 CDS YP_218664.1 62182247 3892596..3893213 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; hypothetical protein 3893213 rmbA 321314004035 rmbA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218664.1 3892596 D 321314 CDS YP_218665.1 62182248 3893274..3896141 1 NC_006905.1 IPR000694: Proline-rich region; IPR004899: Pertactin domain; IPR005546: Autotransporter beta-domain;IPR006315: Outer membrane autotransporter barrel; autotransported protein 3896141 misL 321314004036 misL Salmonella enterica subsp. enterica serovar Choleraesuis str. autotransported protein YP_218665.1 3893274 D 321314 CDS YP_218666.1 62182249 complement(3896236..3896718) 1 NC_006905.1 inner membrane protein 3896718 fidL 321314004037 fidL Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218666.1 3896236 R 321314 CDS YP_218667.1 62182250 complement(3896711..3897568) 1 NC_006905.1 transcriptional regulatory protein 3897568 marT 321314004038 marT Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulatory protein YP_218667.1 3896711 R 321314 CDS YP_218668.1 62182251 complement(3897621..3897734) 1 NC_006905.1 hypothetical protein 3897734 321314004039 SC3681 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218668.1 3897621 R 321314 CDS YP_218669.1 62182252 3898353..3899033 1 NC_006905.1 inner membrane protein 3899033 slsA 321314004040 slsA Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218669.1 3898353 D 321314 CDS YP_218670.1 62182253 complement(3899262..3899741) 1 NC_006905.1 inner membrane protein 3899741 cigR 321314004041 cigR Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218670.1 3899262 R 321314 CDS YP_218671.1 62182254 complement(3900056..3902782) 1 NC_006905.1 IPR000695: H+ transporting ATPase, proton pump; IPR001757: ATPase, E1-E2 type; Mg2+ transport protein 3902782 mgtB 321314004042 mgtB Salmonella enterica subsp. enterica serovar Choleraesuis str. Mg2+ transport protein YP_218671.1 3900056 R 321314 CDS YP_218672.1 62182255 complement(3903002..3903697) 1 NC_006905.1 IPR003416: MgtC/SapB transporter; Mg2+ transport protein 3903697 mgtC 321314004043 mgtC Salmonella enterica subsp. enterica serovar Choleraesuis str. Mg2+ transport protein YP_218672.1 3903002 R 321314 CDS YP_218673.1 62182256 3904305..3905108 1 NC_006905.1 permease 3905108 yicL 321314004044 yicL Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_218673.1 3904305 D 321314 CDS YP_218674.1 62182257 complement(3905151..3906080) 1 NC_006905.1 hypothetical protein 3906080 yfcI 321314004045 yfcI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218674.1 3905151 R 321314 CDS YP_218675.1 62182258 complement(3906316..3907059) 1 NC_006905.1 hypothetical protein 3907059 321314004046 SC3688 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218675.1 3906316 R 321314 CDS YP_218676.1 62182259 complement(3908098..3908958) 1 NC_006905.1 IPR004704: PTS system mannose/fructose/sorbose family IID component; phosphotransferase system enzyme II 3908958 ptnD 321314004048 ptnD Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransferase system enzyme II YP_218676.1 3908098 R 321314 CDS YP_218677.1 62182260 complement(3908955..3909704) 1 NC_006905.1 phosphotransferase system enzyme IIC 3909704 ptpC 321314004049 ptpC Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransferase system enzyme IIC YP_218677.1 3908955 R 321314 CDS YP_218678.1 62182261 complement(3909850..3910335) 1 NC_006905.1 IPR004720: PTS system sorbose subfamily IIB component; phosphotransferase system enzyme IIB 3910335 ptfB 321314004050 ptfB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransferase system enzyme IIB YP_218678.1 3909850 R 321314 CDS YP_218679.1 62182262 complement(3910346..3910771) 1 NC_006905.1 phosphotransferase system enzyme IIA 3910771 321314004051 SC3692 Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransferase system enzyme IIA YP_218679.1 3910346 R 321314 CDS YP_218680.1 62182263 complement(3910993..3913791) 1 NC_006905.1 IPR002078: Sigma-54 factor interaction domain; IPR002464: ATP-dependent helicase, DEAH-box; transcriptional regulator 3913791 levR 321314004052 levR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_218680.1 3910993 R 321314 CDS YP_218681.1 62182264 3913988..3914281 1 NC_006905.1 inner membrane protein 3914281 321314004053 SC3694 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218681.1 3913988 D 321314 CDS YP_218682.1 62182265 3914387..3915769 1 NC_006905.1 IPR001360: Glycoside hydrolase, family 1; glycosyl hydrolase family protein 3915769 bglA 321314004054 bglA Salmonella enterica subsp. enterica serovar Choleraesuis str. glycosyl hydrolase family protein YP_218682.1 3914387 D 321314 CDS YP_218683.1 62182266 3917192..3917596 1 NC_006905.1 hypothetical protein 3917596 321314004056 SC3696 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218683.1 3917192 D 321314 CDS YP_218684.1 62182267 3917580..3917903 1 NC_006905.1 helix-turn-helix protein 3917903 321314004057 SC3697 Salmonella enterica subsp. enterica serovar Choleraesuis str. helix-turn-helix protein YP_218684.1 3917580 D 321314 CDS YP_218685.1 62182268 3918088..3918867 1 NC_006905.1 hypothetical protein 3918867 321314004058 SC3698 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218685.1 3918088 D 321314 CDS YP_218686.1 62182269 complement(3918895..3919218) 1 NC_006905.1 hypothetical protein 3919218 321314004059 SC3699 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218686.1 3918895 R 321314 CDS YP_218687.1 62182270 complement(3919218..3919487) 1 NC_006905.1 IPR000032: Phosphocarrier HPr protein; IPR001020: HPr histidine phosphorylation site; phosphotransferase system, HPr-related protein 3919487 ptfA 321314004060 ptfA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransferase system, HPr-related protein YP_218687.1 3919218 R 321314 CDS YP_218688.1 62182271 complement(3919497..3920357) 1 NC_006905.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 3920357 gatY 321314004061 gatY Salmonella enterica subsp. enterica serovar Choleraesuis str. fructose-1,6-bisphosphate aldolase YP_218688.1 3919497 R 321314 CDS YP_218689.1 62182272 complement(3920420..3921904) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; sugar (pentulose and hexulose) kinase 3921904 xylB 321314004062 xylB Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar (pentulose and hexulose) kinase YP_218689.1 3920420 R 321314 CDS YP_218690.1 62182273 complement(3921897..3923255) 1 NC_006905.1 PTS system galactitol-specific enzyme IIC component 3923255 ptkC 321314004063 ptkC Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system galactitol-specific enzyme IIC component YP_218690.1 3921897 R 321314 CDS YP_218691.1 62182274 complement(3923331..3923618) 1 NC_006905.1 hypothetical protein 3923618 ptkB 321314004064 ptkB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218691.1 3923331 R 321314 CDS YP_218692.1 62182275 complement(3923615..3924088) 1 NC_006905.1 IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system mannitol/fructose-specific IIA component 3924088 321314004065 SC3705 Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransferase system mannitol/fructose-specific IIA component YP_218692.1 3923615 R 321314 CDS YP_218693.1 62182276 complement(3924106..3924849) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 3924849 farR 321314004066 farR Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_218693.1 3924106 R 321314 CDS YP_218694.1 62182277 complement(3925202..3925660) 1 NC_006905.1 hypothetical protein 3925660 yicN 321314004067 yicN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218694.1 3925202 R 321314 CDS YP_218695.1 62182278 complement(3925847..3927238) 1 NC_006905.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 3927238 uhpT 321314004068 uhpT Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar phosphate antiporter YP_218695.1 3925847 R 321314 CDS YP_218696.1 62182279 complement(3928719..3930260) 1 NC_006905.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB 3930260 uhpB 321314004070 uhpB Salmonella enterica subsp. enterica serovar Choleraesuis str. sensory histidine kinase UhpB YP_218696.1 3928719 R 321314 CDS YP_218697.1 62182280 complement(3930220..3930873) 1 NC_006905.1 response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; DNA-binding transcriptional activator UhpA 3930873 uhpA 321314004071 uhpA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator UhpA YP_218697.1 3930220 R 321314 CDS YP_218698.1 62182281 complement(3930885..3931898) 1 NC_006905.1 IPR003006: Immunoglobulin/major histocompatibility complex; hypothetical protein 3931898 vaaS 321314004072 vaaS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218698.1 3930885 R 321314 CDS YP_218699.1 62182282 complement(3931910..3933226) 1 NC_006905.1 IPR007114: Major facilitator superfamily; L-fucose permease 3933226 fucP 321314004073 fucP Salmonella enterica subsp. enterica serovar Choleraesuis str. L-fucose permease YP_218699.1 3931910 R 321314 CDS YP_218700.1 62182283 complement(3933257..3934177) 1 NC_006905.1 IPR002139: Ribokinase; ribokinase family sugar kinase 3934177 rbsK 321314004074 rbsK Salmonella enterica subsp. enterica serovar Choleraesuis str. ribokinase family sugar kinase YP_218700.1 3933257 R 321314 CDS YP_218701.1 62182284 3934491..3935276 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; DeoR family transcriptional regulator 3935276 deoR 321314004075 deoR Salmonella enterica subsp. enterica serovar Choleraesuis str. DeoR family transcriptional regulator YP_218701.1 3934491 D 321314 CDS YP_218702.1 62182285 complement(3935278..3935568) 1 NC_006905.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit 3935568 ilvN 321314004076 ilvN Salmonella enterica subsp. enterica serovar Choleraesuis str. acetolactate synthase 1 regulatory subunit YP_218702.1 3935278 R 321314 CDS YP_218703.1 62182286 complement(3935572..3937260) 1 NC_006905.1 catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit 3937260 ilvB 321314004077 ilvB Salmonella enterica subsp. enterica serovar Choleraesuis str. acetolactate synthase catalytic subunit YP_218703.1 3935572 R 321314 CDS YP_218704.1 62182287 complement(3937367..3937465) 1 NC_006905.1 ilvB operon leader peptide 3937465 ivbL 321314004078 ivbL Salmonella enterica subsp. enterica serovar Choleraesuis str. ilvB operon leader peptide YP_218704.1 3937367 R 321314 CDS YP_218705.1 62182288 3938099..3938188 1 NC_006905.1 toxic peptide TisB 3938188 321314004079 SC3718 Salmonella enterica subsp. enterica serovar Choleraesuis str. toxic peptide TisB YP_218705.1 3938099 D 321314 CDS YP_218706.1 62182289 3938281..3939141 1 NC_006905.1 hypothetical protein 3939141 321314004080 SC3719 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218706.1 3938281 D 321314 CDS YP_218707.1 62182290 3939344..3940528 1 NC_006905.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 3940528 emrD 321314004081 emrD Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug resistance protein D YP_218707.1 3939344 D 321314 CDS YP_218708.1 62182291 complement(3940455..3941489) 1 NC_006905.1 hypothetical protein 3941489 321314004082 SC3721 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218708.1 3940455 R 321314 CDS YP_218709.1 62182292 complement(3941604..3942542) 1 NC_006905.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 3942542 dsdC 321314004083 dsdC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator DsdC YP_218709.1 3941604 R 321314 CDS YP_218710.1 62182293 3942753..3944090 1 NC_006905.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 3944090 dsdX 321314004084 dsdX Salmonella enterica subsp. enterica serovar Choleraesuis str. permease DsdX YP_218710.1 3942753 D 321314 CDS YP_218711.1 62182294 3944108..3945430 1 NC_006905.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 3945430 dsdA 321314004085 dsdA Salmonella enterica subsp. enterica serovar Choleraesuis str. D-serine dehydratase YP_218711.1 3944108 D 321314 CDS YP_218712.1 62182295 complement(3945512..3946042) 1 NC_006905.1 hypothetical protein 3946042 yidF 321314004086 yidF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218712.1 3945512 R 321314 CDS YP_218713.1 62182296 complement(3946039..3946401) 1 NC_006905.1 hypothetical protein 3946401 yidG 321314004087 yidG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218713.1 3946039 R 321314 CDS YP_218714.1 62182297 complement(3946391..3946738) 1 NC_006905.1 inner membrane protein 3946738 yidH 321314004088 yidH Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218714.1 3946391 R 321314 CDS YP_218715.1 62182298 complement(3947180..3948841) 1 NC_006905.1 hypothetical protein 3948841 yidE 321314004089 yidE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218715.1 3947180 R 321314 CDS YP_218716.1 62182299 complement(3948985..3949668) 1 NC_006905.1 integrase 3949668 yis2 321314004090 yis2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_218716.1 3948985 R 321314 CDS YP_218717.1 62182300 complement(3949839..3950240) 1 NC_006905.1 hypothetical protein 3950240 321314004091 SC3730 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218717.1 3949839 R 321314 CDS YP_218718.1 62182301 complement(3950345..3950773) 1 NC_006905.1 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB 3950773 ibpB 321314004092 ibpB Salmonella enterica subsp. enterica serovar Choleraesuis str. heat shock chaperone IbpB YP_218718.1 3950345 R 321314 CDS YP_218719.1 62182302 complement(3950883..3951296) 1 NC_006905.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA 3951296 ibpA 321314004093 ibpA Salmonella enterica subsp. enterica serovar Choleraesuis str. heat shock protein IbpA YP_218719.1 3950883 R 321314 CDS YP_218720.2 162139525 3951603..3951938 1 NC_006905.1 hypothetical protein 3951938 yidQ 321314004094 yidQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218720.2 3951603 D 321314 CDS YP_218721.1 62182304 complement(3951940..3953166) 1 NC_006905.1 hypothetical protein 3953166 yidR 321314004095 yidR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218721.1 3951940 R 321314 CDS YP_218722.1 62182305 complement(3954105..3954662) 1 NC_006905.1 IPR004799: Periplasmic protein thiol:disulfide oxidoreductase DsbE; IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; heme lyase disulfide oxidoreductase, cytocyhrome c-type biogenesis 3954662 ccmG 321314004097 ccmG Salmonella enterica subsp. enterica serovar Choleraesuis str. heme lyase disulfide oxidoreductase, cytocyhrome c-type biogenesis YP_218722.1 3954105 R 321314 CDS YP_218723.1 62182306 complement(3954659..3956590) 1 NC_006905.1 IPR003567: Cytochrome c-type biogenesis protein; IPR003568: Cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein 3956590 ccmF 321314004098 ccmF Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome c-type biogenesis protein YP_218723.1 3954659 R 321314 CDS YP_218724.1 62182307 complement(3956587..3957510) 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR004329: CcmE/CycJ protein; heme ABC exporter ATP-binding protein 3957510 ccmA 321314004099 ccmA Salmonella enterica subsp. enterica serovar Choleraesuis str. heme ABC exporter ATP-binding protein YP_218724.1 3956587 R 321314 CDS YP_218725.1 62182308 complement(3957603..3959003) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; cytochrome c peroxidase 3959003 yhjA 321314004100 yhjA Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome c peroxidase YP_218725.1 3957603 R 321314 CDS YP_218726.1 62182309 complement(3959193..3959825) 1 NC_006905.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 3959825 torD 321314004101 torD Salmonella enterica subsp. enterica serovar Choleraesuis str. chaperone protein TorD YP_218726.1 3959193 R 321314 CDS YP_218727.1 62182310 complement(3959818..3962370) 1 NC_006905.1 IPR006655: Prokaryotic molybdopterin oxidoreductase; trimethylamine N-oxide reductase subunit 3962370 torA 321314004102 torA Salmonella enterica subsp. enterica serovar Choleraesuis str. trimethylamine N-oxide reductase subunit YP_218727.1 3959818 R 321314 CDS YP_218728.1 62182311 complement(3962360..3963544) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; IPR005126: NapC/NirT cytochrome c, N-terminal; trimethylamine N-oxide reductase, cytochrome c-type subunit, also has activity as negativer regulator of tor operon 3963544 torC 321314004103 torC Salmonella enterica subsp. enterica serovar Choleraesuis str. trimethylamine N-oxide reductase, cytochrome c-type subunit, also has activity as negativer regulator of tor operon YP_218728.1 3962360 R 321314 CDS YP_218729.1 62182312 3963674..3964366 1 NC_006905.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 3964366 torR 321314004104 torR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator TorR YP_218729.1 3963674 D 321314 CDS YP_218730.1 62182313 3965459..3968194 1 NC_006905.1 Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 3968194 torS 321314004106 torS Salmonella enterica subsp. enterica serovar Choleraesuis str. hybrid sensory histidine kinase TorS YP_218730.1 3965459 D 321314 CDS YP_218731.1 62182314 complement(3968220..3969557) 1 NC_006905.1 IPR000849: GlpT transporter; IPR004744: D-galactonate transporter; IPR005828: General substrate transporter;IPR007114: Major facilitator superfamily; major facilitator superfamily D-galactonate transporter 3969557 dgoT 321314004107 dgoT Salmonella enterica subsp. enterica serovar Choleraesuis str. major facilitator superfamily D-galactonate transporter YP_218731.1 3968220 R 321314 CDS YP_218732.1 62182315 complement(3969642..3970790) 1 NC_006905.1 in bifunctional: 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase; IPR001354: Mandelate racemase/muconate lactonizing enzyme; galactonate dehydratase 3970790 dgoA 321314004108 dgoA Salmonella enterica subsp. enterica serovar Choleraesuis str. galactonate dehydratase YP_218732.1 3969642 R 321314 CDS YP_218733.1 62182316 complement(3970787..3971404) 1 NC_006905.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 3971404 dgoA 321314004109 dgoA Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_218733.1 3970787 R 321314 CDS YP_218734.1 62182317 complement(3971388..3972266) 1 NC_006905.1 2-oxo-3-deoxygalactonate kinase 3972266 dgoK 321314004110 dgoK Salmonella enterica subsp. enterica serovar Choleraesuis str. 2-oxo-3-deoxygalactonate kinase YP_218734.1 3971388 R 321314 CDS YP_218735.1 62182318 complement(3972263..3972952) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; galactonate operon transcriptional repressor 3972952 dgoR 321314004111 dgoR Salmonella enterica subsp. enterica serovar Choleraesuis str. galactonate operon transcriptional repressor YP_218735.1 3972263 R 321314 CDS YP_218736.1 62182319 complement(3973213..3974058) 1 NC_006905.1 YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase 3974058 yidA 321314004112 yidA Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar phosphatase YP_218736.1 3973213 R 321314 CDS YP_218737.1 62182320 3974347..3975609 1 NC_006905.1 IPR007114: Major facilitator superfamily; permease 3975609 gudP 321314004113 gudP Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_218737.1 3974347 D 321314 CDS YP_218738.1 62182321 3975623..3976816 1 NC_006905.1 IPR001354: Mandelate racemase/muconate lactonizing enzyme; mandelate racemase 3976816 dgoA 321314004114 dgoA Salmonella enterica subsp. enterica serovar Choleraesuis str. mandelate racemase YP_218738.1 3975623 D 321314 CDS YP_218739.1 62182322 3977063..3977851 1 NC_006905.1 LysR family transcriptional regulator 3977851 321314004115 SC3752 Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_218739.1 3977063 D 321314 CDS YP_218740.1 62182323 complement(3977848..3980262) 1 NC_006905.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 3980262 gyrB 321314004116 gyrB Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA gyrase subunit B YP_218740.1 3977848 R 321314 CDS YP_218741.1 62182324 complement(3980291..3981364) 1 NC_006905.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3981364 recF 321314004117 recF Salmonella enterica subsp. enterica serovar Choleraesuis str. recombination protein F YP_218741.1 3980291 R 321314 CDS YP_218742.1 62182325 complement(3981512..3982612) 1 NC_006905.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3982612 dnaN 321314004118 dnaN Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase III subunit beta YP_218742.1 3981512 R 321314 CDS YP_218743.1 62182326 complement(3982617..3984017) 1 NC_006905.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 3984017 dnaA 321314004119 dnaA Salmonella enterica subsp. enterica serovar Choleraesuis str. chromosome replication initiator DnaA YP_218743.1 3982617 R 321314 CDS YP_218744.1 62182327 3984678..3984818 1 NC_006905.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3984818 rpmH 321314004120 rpmH Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L34 YP_218744.1 3984678 D 321314 CDS YP_218745.1 62182328 3984868..3985284 1 NC_006905.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3985284 rnpA 321314004121 rnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease P YP_218745.1 3984868 D 321314 CDS YP_218746.1 62182329 3985417..3987063 1 NC_006905.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 3987063 yidC 321314004122 yidC Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein translocase component YidC YP_218746.1 3985417 D 321314 CDS YP_218747.1 62182330 3987205..3988569 1 NC_006905.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3988569 trmE 321314004123 trmE Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA modification GTPase TrmE YP_218747.1 3987205 D 321314 CDS YP_218748.1 62182331 3988752..3989939 1 NC_006905.1 Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 3989939 yidY 321314004124 yidY Salmonella enterica subsp. enterica serovar Choleraesuis str. multidrug efflux system protein MdtL YP_218748.1 3988752 D 321314 CDS YP_218749.1 62182332 3990997..3991752 1 NC_006905.1 hypothetical protein 3991752 yieE 321314004126 yieE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218749.1 3990997 D 321314 CDS YP_218750.2 162139524 3991770..3992336 1 NC_006905.1 IPR005025: NADPH-dependent FMN reductase; hypothetical protein 3992336 yieF 321314004127 yieF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218750.2 3991770 D 321314 CDS YP_218751.1 62182334 complement(3992343..3992663) 1 NC_006905.1 hypothetical protein 3992663 321314004128 SC3764 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218751.1 3992343 R 321314 CDS YP_218752.1 62182335 complement(3992814..3994277) 1 NC_006905.1 IPR002040: Tachykinin/Neurokinin; IPR006043: Xanthine/uracil/vitamin C permease family; xanthine/uracil permease family protein 3994277 yieG 321314004129 yieG Salmonella enterica subsp. enterica serovar Choleraesuis str. xanthine/uracil permease family protein YP_218752.1 3992814 R 321314 CDS YP_218753.1 62182336 3994320..3994985 1 NC_006905.1 YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase 3994985 yieH 321314004130 yieH Salmonella enterica subsp. enterica serovar Choleraesuis str. 6-phosphogluconate phosphatase YP_218753.1 3994320 D 321314 CDS YP_218754.1 62182337 complement(3995080..3995805) 1 NC_006905.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 3995805 phoU 321314004131 phoU Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator PhoU YP_218754.1 3995080 R 321314 CDS YP_218755.1 62182338 complement(3995820..3996593) 1 NC_006905.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 3996593 pstB 321314004132 pstB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphate transporter ATP-binding protein YP_218755.1 3995820 R 321314 CDS YP_218756.1 62182339 complement(3996680..3997570) 1 NC_006905.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 3997570 pstA 321314004133 pstA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphate transporter permease subunit PtsA YP_218756.1 3996680 R 321314 CDS YP_218757.1 62182340 complement(3997570..3998529) 1 NC_006905.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 3998529 pstC 321314004134 pstC Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphate transporter permease subunit PstC YP_218757.1 3997570 R 321314 CDS YP_218758.1 62182341 complement(3998665..3999705) 1 NC_006905.1 phosphate ABC transporter substrate-binding protein 3999705 pstS 321314004135 pstS Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphate ABC transporter substrate-binding protein YP_218758.1 3998665 R 321314 CDS YP_218759.1 62182342 complement(4001272..4002090) 1 NC_006905.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4002090 aroE 321314004137 aroE Salmonella enterica subsp. enterica serovar Choleraesuis str. shikimate 5-dehydrogenase YP_218759.1 4001272 R 321314 CDS YP_218760.1 62182343 4002278..4003942 1 NC_006905.1 dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein 4003942 yabN 321314004138 yabN Salmonella enterica subsp. enterica serovar Choleraesuis str. dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein YP_218760.1 4002278 D 321314 CDS YP_218761.1 62182344 complement(4004093..4005922) 1 NC_006905.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4005922 glmS 321314004139 glmS Salmonella enterica subsp. enterica serovar Choleraesuis str. glucosamine--fructose-6-phosphate aminotransferase YP_218761.1 4004093 R 321314 CDS YP_218762.1 62182345 complement(4006111..4007481) 1 NC_006905.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4007481 glmU 321314004140 glmU Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_218762.1 4006111 R 321314 CDS YP_218763.1 62182346 complement(4008727..4009146) 1 NC_006905.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 4009146 atpC 321314004142 atpC Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP synthase F0F1 subunit epsilon YP_218763.1 4008727 R 321314 CDS YP_218764.1 62182347 complement(4009167..4010549) 1 NC_006905.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 4010549 atpD 321314004143 atpD Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP synthase F0F1 subunit beta YP_218764.1 4009167 R 321314 CDS YP_218765.1 62182348 complement(4010576..4011439) 1 NC_006905.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 4011439 atpG 321314004144 atpG Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP synthase F0F1 subunit gamma YP_218765.1 4010576 R 321314 CDS YP_218766.1 62182349 complement(4011490..4013031) 1 NC_006905.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 4013031 atpA 321314004145 atpA Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP synthase F0F1 subunit alpha YP_218766.1 4011490 R 321314 CDS YP_218767.1 62182350 complement(4013044..4013577) 1 NC_006905.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 4013577 atpH 321314004146 atpH Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP synthase F0F1 subunit delta YP_218767.1 4013044 R 321314 CDS YP_218768.1 62182351 complement(4013592..4014062) 1 NC_006905.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 4014062 atpF 321314004147 atpF Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP synthase F0F1 subunit B YP_218768.1 4013592 R 321314 CDS YP_218769.1 62182352 complement(4014122..4014361) 1 NC_006905.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 4014361 atpL 321314004148 atpL Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP synthase F0F1 subunit C YP_218769.1 4014122 R 321314 CDS YP_218770.1 62182353 complement(4014408..4015223) 1 NC_006905.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 4015223 atpB 321314004149 atpB Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP synthase F0F1 subunit A YP_218770.1 4014408 R 321314 CDS YP_218771.2 162139523 complement(4015232..4015612) 1 NC_006905.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 4015612 atpI 321314004150 atpI Salmonella enterica subsp. enterica serovar Choleraesuis str. F0F1 ATP synthase subunit I YP_218771.2 4015232 R 321314 CDS YP_218772.1 62182355 complement(4015727..4015870) 1 NC_006905.1 hypothetical protein 4015870 321314004151 SC3785 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218772.1 4015727 R 321314 CDS YP_218773.1 62182356 complement(4016227..4016850) 1 NC_006905.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4016850 gidB 321314004152 gidB Salmonella enterica subsp. enterica serovar Choleraesuis str. 16S rRNA methyltransferase GidB YP_218773.1 4016227 R 321314 CDS YP_218774.1 62182357 complement(4016953..4018842) 1 NC_006905.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4018842 gidA 321314004153 gidA Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_218774.1 4016953 R 321314 CDS YP_218775.1 62182358 complement(4019221..4019664) 1 NC_006905.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4019664 mioC 321314004154 mioC Salmonella enterica subsp. enterica serovar Choleraesuis str. flavodoxin YP_218775.1 4019221 R 321314 CDS YP_218776.1 62182359 complement(4019754..4020212) 1 NC_006905.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 4020212 asnC 321314004155 asnC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator AsnC YP_218776.1 4019754 R 321314 CDS YP_218777.1 62182360 4020363..4021355 1 NC_006905.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4021355 asnA 321314004156 asnA Salmonella enterica subsp. enterica serovar Choleraesuis str. asparagine synthetase AsnA YP_218777.1 4020363 D 321314 CDS YP_218778.1 62182361 complement(4021360..4022811) 1 NC_006905.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 4022811 yieM 321314004157 yieM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218778.1 4021360 R 321314 CDS YP_218779.2 229037902 complement(4022805..4024301) 1 NC_006905.1 interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA 4024301 yieN 321314004158 yieN Salmonella enterica subsp. enterica serovar Choleraesuis str. regulatory ATPase RavA YP_218779.2 4022805 R 321314 CDS YP_218780.1 62182363 4024649..4026517 1 NC_006905.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4026517 trkD 321314004159 trkD Salmonella enterica subsp. enterica serovar Choleraesuis str. potassium transport protein Kup YP_218780.1 4024649 D 321314 CDS YP_218781.1 62182364 4026733..4027152 1 NC_006905.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4027152 rbsD 321314004160 rbsD Salmonella enterica subsp. enterica serovar Choleraesuis str. D-ribose pyranase YP_218781.1 4026733 D 321314 CDS YP_218782.1 62182365 4027115..4028665 1 NC_006905.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 4028665 rbsA 321314004161 rbsA Salmonella enterica subsp. enterica serovar Choleraesuis str. D-ribose transporter ATP-binding protein YP_218782.1 4027115 D 321314 CDS YP_218783.1 62182366 4028671..4029663 1 NC_006905.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4029663 rbsC 321314004162 rbsC Salmonella enterica subsp. enterica serovar Choleraesuis str. ribose ABC transporter permease YP_218783.1 4028671 D 321314 CDS YP_218784.1 62182367 4029660..4030550 1 NC_006905.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4030550 rbsB 321314004163 rbsB Salmonella enterica subsp. enterica serovar Choleraesuis str. D-ribose transporter subunit RbsB YP_218784.1 4029660 D 321314 CDS YP_218785.1 62182368 4030683..4031612 1 NC_006905.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4031612 rbsK 321314004164 rbsK Salmonella enterica subsp. enterica serovar Choleraesuis str. ribokinase YP_218785.1 4030683 D 321314 CDS YP_218786.1 62182369 4031625..4032614 1 NC_006905.1 DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4032614 rbsR 321314004165 rbsR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional repressor RbsR YP_218786.1 4031625 D 321314 CDS YP_218787.1 62182370 complement(4032580..4034007) 1 NC_006905.1 IPR001411: Tetracycline resistance protein TetB; IPR007114: Major facilitator superfamily; MFS family tranport protein 4034007 yieO 321314004166 yieO Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family tranport protein YP_218787.1 4032580 R 321314 CDS YP_218788.1 62182371 complement(4034019..4034723) 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 4034723 yieP 321314004167 yieP Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_218788.1 4034019 R 321314 CDS YP_218791.1 62182374 complement(4040691..4041539) 1 NC_006905.1 Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR 4041539 yifA 321314004175 yifA Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator HdfR YP_218791.1 4040691 R 321314 CDS YP_218792.1 62182375 4041646..4041984 1 NC_006905.1 hypothetical protein 4041984 yifE 321314004176 yifE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218792.1 4041646 D 321314 CDS YP_218793.1 62182376 complement(4042009..4043529) 1 NC_006905.1 among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; ATP-dependent protease 4043529 yifB 321314004177 yifB Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent protease YP_218793.1 4042009 R 321314 CDS YP_218794.1 62182377 4045746..4046009 1 NC_006905.1 acetolactate synthase 2 regulatory subunit 4046009 ilvM 321314004179 ilvM Salmonella enterica subsp. enterica serovar Choleraesuis str. acetolactate synthase 2 regulatory subunit YP_218794.1 4045746 D 321314 CDS YP_218795.1 62182378 4046027..4046956 1 NC_006905.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4046956 ilvE 321314004180 ilvE Salmonella enterica subsp. enterica serovar Choleraesuis str. branched-chain amino acid aminotransferase YP_218795.1 4046027 D 321314 CDS YP_218796.1 62182379 4047116..4048966 1 NC_006905.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4048966 ilvD 321314004181 ilvD Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydroxy-acid dehydratase YP_218796.1 4047116 D 321314 CDS YP_218797.1 62182380 4048969..4050513 1 NC_006905.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4050513 ilvA 321314004182 ilvA Salmonella enterica subsp. enterica serovar Choleraesuis str. threonine dehydratase YP_218797.1 4048969 D 321314 CDS YP_218798.1 62182381 4050796..4051113 1 NC_006905.1 hypothetical protein 4051113 321314004183 SC3811 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218798.1 4050796 D 321314 CDS YP_218799.1 62182382 4051110..4051451 1 NC_006905.1 hypothetical protein 4051451 321314004184 SC3812 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218799.1 4051110 D 321314 CDS YP_218800.1 62182383 complement(4051454..4052341) 1 NC_006905.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4052341 ilvY 321314004185 ilvY Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator IlvY YP_218800.1 4051454 R 321314 CDS YP_218801.1 62182384 4052506..4053981 1 NC_006905.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4053981 ilvC 321314004186 ilvC Salmonella enterica subsp. enterica serovar Choleraesuis str. ketol-acid reductoisomerase YP_218801.1 4052506 D 321314 CDS YP_218802.1 62182385 complement(4054073..4054354) 1 NC_006905.1 IPR000297: PpiC-type peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl cis-trans isomerase C 4054354 ppiC 321314004187 ppiC Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidyl-prolyl cis-trans isomerase C YP_218802.1 4054073 R 321314 CDS YP_218803.1 62182386 4054359..4054706 1 NC_006905.1 hypothetical protein 4054706 321314004188 SC3816 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218803.1 4054359 D 321314 CDS YP_218804.1 62182387 4054682..4054792 1 NC_006905.1 inner membrane protein 4054792 punC 321314004189 punC Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218804.1 4054682 D 321314 CDS YP_218805.1 62182388 4054793..4056916 1 NC_006905.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4056916 rep 321314004190 rep Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent DNA helicase Rep YP_218805.1 4054793 D 321314 CDS YP_218806.1 62182389 complement(4056956..4058437) 1 NC_006905.1 catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase 4058437 gppA 321314004191 gppA Salmonella enterica subsp. enterica serovar Choleraesuis str. guanosine pentaphosphate phosphohydrolase YP_218806.1 4056956 R 321314 CDS YP_218807.1 62182390 complement(4058556..4059821) 1 NC_006905.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4059821 rhlB 321314004192 rhlB Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent RNA helicase RhlB YP_218807.1 4058556 R 321314 CDS YP_218808.1 62182391 4059887..4060294 1 NC_006905.1 IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; thioredoxin 4060294 trxA 321314004193 trxA Salmonella enterica subsp. enterica serovar Choleraesuis str. thioredoxin YP_218808.1 4059887 D 321314 CDS YP_218809.1 62182392 4060641..4061972 1 NC_006905.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4061972 rho 321314004194 rho Salmonella enterica subsp. enterica serovar Choleraesuis str. transcription termination factor Rho YP_218809.1 4060641 D 321314 CDS YP_218810.1 62182393 4062212..4063315 1 NC_006905.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4063315 wecA 321314004195 wecA Salmonella enterica subsp. enterica serovar Choleraesuis str. undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase YP_218810.1 4062212 D 321314 CDS YP_218811.1 62182394 4063327..4064373 1 NC_006905.1 Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4064373 wzzE 321314004196 wzzE Salmonella enterica subsp. enterica serovar Choleraesuis str. lipopolysaccharide biosynthesis protein WzzE YP_218811.1 4063327 D 321314 CDS YP_218812.1 62182395 4064552..4065559 1 NC_006905.1 UDP-N-acetyl glucosamine -2-epimerase 4065559 wecB 321314004197 wecB Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetyl glucosamine -2-epimerase YP_218812.1 4064552 D 321314 CDS YP_218813.2 162139522 4065556..4066818 1 NC_006905.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4066818 wecC 321314004198 wecC Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetyl-D-mannosamine dehydrogenase YP_218813.2 4065556 D 321314 CDS YP_218814.1 62182397 4066818..4067885 1 NC_006905.1 dTDP-glucose 4,6-dehydratase 4067885 rffG 321314004199 rffG Salmonella enterica subsp. enterica serovar Choleraesuis str. dTDP-glucose 4,6-dehydratase YP_218814.1 4066818 D 321314 CDS YP_218815.1 62182398 4067918..4068799 1 NC_006905.1 glucose-1-phosphate thymidylyltransferase 4068799 rffH 321314004200 rffH Salmonella enterica subsp. enterica serovar Choleraesuis str. glucose-1-phosphate thymidylyltransferase YP_218815.1 4067918 D 321314 CDS YP_218816.1 62182399 4068777..4069454 1 NC_006905.1 TDP-fucosamine acetyltransferase 4069454 wecD 321314004201 wecD Salmonella enterica subsp. enterica serovar Choleraesuis str. TDP-fucosamine acetyltransferase YP_218816.1 4068777 D 321314 CDS YP_218817.1 62182400 4069459..4070589 1 NC_006905.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4070589 wecE 321314004202 wecE Salmonella enterica subsp. enterica serovar Choleraesuis str. TDP-4-oxo-6-deoxy-D-glucose transaminase YP_218817.1 4069459 D 321314 CDS YP_218818.1 62182401 4070591..4071841 1 NC_006905.1 O-antigen translocase in LPS biosyntesis 4071841 wzxE 321314004203 wzxE Salmonella enterica subsp. enterica serovar Choleraesuis str. O-antigen translocase in LPS biosyntesis YP_218818.1 4070591 D 321314 CDS YP_218819.1 62182402 4071838..4072917 1 NC_006905.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4072917 321314004204 SC3832 Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-alpha-L-fucosyltransferase YP_218819.1 4071838 D 321314 CDS YP_218820.1 62182403 4072914..4074272 1 NC_006905.1 enterobacterial common antigen polymerase; common antigen polymerase 4074272 wecF 321314004205 wecF Salmonella enterica subsp. enterica serovar Choleraesuis str. common antigen polymerase YP_218820.1 4072914 D 321314 CDS YP_218821.1 62182404 4074269..4075009 1 NC_006905.1 UDP-N-acetyl-D-mannosaminuronic acid transferase 4075009 wecG 321314004206 wecG Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetyl-D-mannosaminuronic acid transferase YP_218821.1 4074269 D 321314 CDS YP_218822.1 62182405 4075216..4076601 1 NC_006905.1 uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transporter 4076601 yifK 321314004207 yifK Salmonella enterica subsp. enterica serovar Choleraesuis str. transporter YP_218822.1 4075216 D 321314 CDS YP_218823.1 62182406 complement(4077718..4078917) 1 NC_006905.1 a late step of protoheme IX synthesis; IPR001440: TPR repeat; IPR001993: Mitochondrial substrate carrier; IPR005254: Protoheme IX biosynthesis protein; protoheme IX biogenesis protein 4078917 hemY 321314004212 hemY Salmonella enterica subsp. enterica serovar Choleraesuis str. protoheme IX biogenesis protein YP_218823.1 4077718 R 321314 CDS YP_218824.1 62182407 complement(4078917..4080086) 1 NC_006905.1 uroporphyrinogen III C-methyltransferase 4080086 hemX 321314004213 hemX Salmonella enterica subsp. enterica serovar Choleraesuis str. uroporphyrinogen III C-methyltransferase YP_218824.1 4078917 R 321314 CDS YP_218825.1 62182408 complement(4080108..4080848) 1 NC_006905.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4080848 hemD 321314004214 hemD Salmonella enterica subsp. enterica serovar Choleraesuis str. uroporphyrinogen-III synthase YP_218825.1 4080108 R 321314 CDS YP_218826.1 62182409 complement(4080845..4081807) 1 NC_006905.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4081807 hemC 321314004215 hemC Salmonella enterica subsp. enterica serovar Choleraesuis str. porphobilinogen deaminase YP_218826.1 4080845 R 321314 CDS YP_218827.1 62182410 4082163..4084709 1 NC_006905.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4084709 cyaA 321314004216 cyaA Salmonella enterica subsp. enterica serovar Choleraesuis str. adenylate cyclase YP_218827.1 4082163 D 321314 CDS YP_218828.1 62182411 complement(4084787..4085107) 1 NC_006905.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4085107 cyaY 321314004217 cyaY Salmonella enterica subsp. enterica serovar Choleraesuis str. frataxin-like protein YP_218828.1 4084787 R 321314 CDS YP_218829.1 62182412 complement(4085177..4085566) 1 NC_006905.1 inner membrane protein 4085566 321314004218 SC3842 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218829.1 4085177 R 321314 CDS YP_218830.1 62182413 complement(4085554..4085784) 1 NC_006905.1 hypothetical protein 4085784 321314004219 SC3843 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218830.1 4085554 R 321314 CDS YP_218831.1 62182414 complement(4085823..4086074) 1 NC_006905.1 hypothetical protein 4086074 321314004220 SC3844 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218831.1 4085823 R 321314 CDS YP_218832.1 62182415 4086260..4086463 1 NC_006905.1 outer membrane lipoprotein 4086463 yifL 321314004221 yifL Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_218832.1 4086260 D 321314 CDS YP_218833.2 162139521 4086500..4087324 1 NC_006905.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4087324 dapF 321314004222 dapF Salmonella enterica subsp. enterica serovar Choleraesuis str. diaminopimelate epimerase YP_218833.2 4086500 D 321314 CDS YP_218834.1 62182417 4087321..4088028 1 NC_006905.1 hypothetical protein 4088028 yigA 321314004223 yigA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218834.1 4087321 D 321314 CDS YP_218835.1 62182418 4088025..4088927 1 NC_006905.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4088927 xerC 321314004224 xerC Salmonella enterica subsp. enterica serovar Choleraesuis str. site-specific tyrosine recombinase XerC YP_218835.1 4088025 D 321314 CDS YP_218836.1 62182419 4088927..4089643 1 NC_006905.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4089643 yigB 321314004225 yigB Salmonella enterica subsp. enterica serovar Choleraesuis str. flavin mononucleotide phosphatase YP_218836.1 4088927 D 321314 CDS YP_218837.1 62182420 4089779..4091941 1 NC_006905.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4091941 uvrD 321314004226 uvrD Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-dependent helicase II YP_218837.1 4089779 D 321314 CDS YP_218838.1 62182421 4092413..4093363 1 NC_006905.1 responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4093363 corA 321314004227 corA Salmonella enterica subsp. enterica serovar Choleraesuis str. magnesium/nickel/cobalt transporter CorA YP_218838.1 4092413 D 321314 CDS YP_218839.1 62182422 complement(4093411..4093791) 1 NC_006905.1 hypothetical protein 4093791 321314004228 SC3852 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218839.1 4093411 R 321314 CDS YP_218840.1 62182423 4093948..4094262 1 NC_006905.1 hypothetical protein 4094262 321314004229 SC3853 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218840.1 4093948 D 321314 CDS YP_218841.1 62182424 complement(4094302..4095189) 1 NC_006905.1 chloramphenicol resistance 4095189 rarD 321314004230 rarD Salmonella enterica subsp. enterica serovar Choleraesuis str. chloramphenicol resistance YP_218841.1 4094302 R 321314 CDS YP_218842.2 162139520 complement(4095233..4095700) 1 NC_006905.1 IPR003736: Phenylacetic acid degradation-related protein; IPR006683: Thioesterase superfamily; hypothetical protein 4095700 yigI 321314004231 yigI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218842.2 4095233 R 321314 CDS YP_218843.1 62182426 4095865..4096734 1 NC_006905.1 catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4096734 pldA 321314004232 pldA Salmonella enterica subsp. enterica serovar Choleraesuis str. phospholipase A YP_218843.1 4095865 D 321314 CDS YP_218844.1 62182427 4096800..4098647 1 NC_006905.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4098647 recQ 321314004233 recQ Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent DNA helicase RecQ YP_218844.1 4096800 D 321314 CDS YP_218845.1 62182428 4098711..4099331 1 NC_006905.1 IPR001123: Lysine exporter protein (LYSE/YGGA); threonine efflux system 4099331 rhtC 321314004234 rhtC Salmonella enterica subsp. enterica serovar Choleraesuis str. threonine efflux system YP_218845.1 4098711 D 321314 CDS YP_218846.1 62182429 complement(4099371..4099991) 1 NC_006905.1 IPR001123: Lysine exporter protein (LYSE/YGGA); homoserine/homoserine lactone efflux protein 4099991 rhtB 321314004235 rhtB Salmonella enterica subsp. enterica serovar Choleraesuis str. homoserine/homoserine lactone efflux protein YP_218846.1 4099371 R 321314 CDS YP_218847.1 62182430 4100006..4101118 1 NC_006905.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4101118 pldB 321314004236 pldB Salmonella enterica subsp. enterica serovar Choleraesuis str. lysophospholipase L2 YP_218847.1 4100006 D 321314 CDS YP_218848.1 62182431 4101134..4101934 1 NC_006905.1 purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; sugar phosphatase 4101934 yigL 321314004237 yigL Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar phosphatase YP_218848.1 4101134 D 321314 CDS YP_218849.1 62182432 4102015..4102914 1 NC_006905.1 transporter 4102914 yigM 321314004238 yigM Salmonella enterica subsp. enterica serovar Choleraesuis str. transporter YP_218849.1 4102015 D 321314 CDS YP_218850.1 62182433 complement(4102802..4103755) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; metE/metH transcriptional regulator 4103755 metR 321314004239 metR Salmonella enterica subsp. enterica serovar Choleraesuis str. metE/metH transcriptional regulator YP_218850.1 4102802 R 321314 CDS YP_218851.1 62182434 4104004..4106268 1 NC_006905.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4106268 metE 321314004240 metE Salmonella enterica subsp. enterica serovar Choleraesuis str. 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_218851.1 4104004 D 321314 CDS YP_218852.1 62182435 complement(4108025..4108837) 1 NC_006905.1 dienelactone hydrolase family protein 4108837 dlhH 321314004242 dlhH Salmonella enterica subsp. enterica serovar Choleraesuis str. dienelactone hydrolase family protein YP_218852.1 4108025 R 321314 CDS YP_218853.1 62182436 4109096..4109857 1 NC_006905.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4109857 udp 321314004243 udp Salmonella enterica subsp. enterica serovar Choleraesuis str. uridine phosphorylase YP_218853.1 4109096 D 321314 CDS YP_218854.1 62182437 4109997..4111427 1 NC_006905.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4111427 yigN 321314004244 yigN Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA recombination protein RmuC YP_218854.1 4109997 D 321314 CDS YP_218855.1 62182438 4111523..4112278 1 NC_006905.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4112278 ubiE 321314004245 ubiE Salmonella enterica subsp. enterica serovar Choleraesuis str. ubiquinone/menaquinone biosynthesis methyltransferase YP_218855.1 4111523 D 321314 CDS YP_218856.1 62182439 4112288..4112893 1 NC_006905.1 hypothetical protein 4112893 yigP 321314004246 yigP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218856.1 4112288 D 321314 CDS YP_218857.1 62182440 4112890..4114530 1 NC_006905.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 4114530 ubiB 321314004247 ubiB Salmonella enterica subsp. enterica serovar Choleraesuis str. ubiquinone biosynthesis protein UbiB YP_218857.1 4112890 D 321314 CDS YP_218858.1 62182441 4114736..4114990 1 NC_006905.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin-arginine translocation protein TatA 4114990 tatA 321314004248 tatA Salmonella enterica subsp. enterica serovar Choleraesuis str. twin-arginine translocation protein TatA YP_218858.1 4114736 D 321314 CDS YP_218859.1 62182442 4114994..4115542 1 NC_006905.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4115542 tatB 321314004249 tatB Salmonella enterica subsp. enterica serovar Choleraesuis str. sec-independent translocase YP_218859.1 4114994 D 321314 CDS YP_218860.1 62182443 4115545..4116324 1 NC_006905.1 with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4116324 tatC 321314004250 tatC Salmonella enterica subsp. enterica serovar Choleraesuis str. twin-arginine protein translocation system subunit TatC YP_218860.1 4115545 D 321314 CDS YP_218861.1 62182444 4116366..4117148 1 NC_006905.1 magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4117148 yigW 321314004251 yigW Salmonella enterica subsp. enterica serovar Choleraesuis str. DNase TatD YP_218861.1 4116366 D 321314 CDS YP_218862.1 62182445 complement(4117156..4117644) 1 NC_006905.1 transcriptional activator RfaH 4117644 rfaH 321314004252 rfaH Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional activator RfaH YP_218862.1 4117156 R 321314 CDS YP_218863.1 62182446 4117830..4119308 1 NC_006905.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4119308 yigC 321314004253 yigC Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_218863.1 4117830 D 321314 CDS YP_218864.1 62182447 4119394..4120095 1 NC_006905.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4120095 fre 321314004254 fre Salmonella enterica subsp. enterica serovar Choleraesuis str. FMN reductase YP_218864.1 4119394 D 321314 CDS YP_218865.1 62182448 4120349..4122172 1 NC_006905.1 hypothetical protein 4122172 321314004255 SC3878 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218865.1 4120349 D 321314 CDS YP_218866.1 62182449 complement(4122369..4123532) 1 NC_006905.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4123532 fadA 321314004256 fadA Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-ketoacyl-CoA thiolase YP_218866.1 4122369 R 321314 CDS YP_218867.2 162139519 complement(4123542..4125731) 1 NC_006905.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 4125731 fadB 321314004257 fadB Salmonella enterica subsp. enterica serovar Choleraesuis str. multifunctional fatty acid oxidation complex subunit alpha YP_218867.2 4123542 R 321314 CDS YP_218868.1 62182451 4125921..4127252 1 NC_006905.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4127252 pepQ 321314004258 pepQ Salmonella enterica subsp. enterica serovar Choleraesuis str. proline dipeptidase YP_218868.1 4125921 D 321314 CDS YP_218869.1 62182452 4127252..4127866 1 NC_006905.1 IPR001498: Protein of unknown function UPF0029; hypothetical protein 4127866 yigZ 321314004259 yigZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218869.1 4127252 D 321314 CDS YP_218870.1 62182453 4129368..4129913 1 NC_006905.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4129913 hemG 321314004261 hemG Salmonella enterica subsp. enterica serovar Choleraesuis str. protoporphyrinogen oxidase YP_218870.1 4129368 D 321314 CDS YP_218873.1 62182456 complement(4135762..4136292) 1 NC_006905.1 in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein B 4136292 mobB 321314004267 mobB Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdopterin-guanine dinucleotide biosynthesis protein B YP_218873.1 4135762 R 321314 CDS YP_218874.1 62182457 complement(4136274..4136858) 1 NC_006905.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4136858 mobA 321314004268 mobA Salmonella enterica subsp. enterica serovar Choleraesuis str. molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_218874.1 4136274 R 321314 CDS YP_218875.1 62182458 4136928..4137197 1 NC_006905.1 hypothetical protein 4137197 yihD 321314004269 yihD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218875.1 4136928 D 321314 CDS YP_218876.1 62182459 4137274..4138260 1 NC_006905.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4138260 yihE 321314004270 yihE Salmonella enterica subsp. enterica serovar Choleraesuis str. serine/threonine protein kinase YP_218876.1 4137274 D 321314 CDS YP_218877.1 62182460 4138277..4138900 1 NC_006905.1 IPR006662: Thioredoxin type domain; IPR006663: Thioredoxin domain 2; protein disulfide isomerase I 4138900 dsbA 321314004271 dsbA Salmonella enterica subsp. enterica serovar Choleraesuis str. protein disulfide isomerase I YP_218877.1 4138277 D 321314 CDS YP_218878.1 62182461 4140207..4142993 1 NC_006905.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4142993 polA 321314004273 polA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase I YP_218878.1 4140207 D 321314 CDS YP_218879.1 62182462 4143200..4143343 1 NC_006905.1 hypothetical protein 4143343 321314004274 SC3892 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218879.1 4143200 D 321314 CDS YP_218880.1 62182463 complement(4143328..4143960) 1 NC_006905.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4143960 engB 321314004275 engB Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosome biogenesis GTP-binding protein YsxC YP_218880.1 4143328 R 321314 CDS YP_218881.1 62182464 4144200..4144424 1 NC_006905.1 hypothetical protein 4144424 321314004276 SC3894 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218881.1 4144200 D 321314 CDS YP_218882.1 62182465 4144543..4145058 1 NC_006905.1 hypothetical protein 4145058 yihI 321314004277 yihI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218882.1 4144543 D 321314 CDS YP_218883.1 62182466 4145247..4146620 1 NC_006905.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4146620 hemN 321314004278 hemN Salmonella enterica subsp. enterica serovar Choleraesuis str. coproporphyrinogen III oxidase YP_218883.1 4145247 D 321314 CDS YP_218884.2 162139518 complement(4146933..4148342) 1 NC_006905.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) 4148342 glnG 321314004279 glnG Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrogen regulation protein NR(I) YP_218884.2 4146933 R 321314 CDS YP_218885.1 62182468 complement(4148351..4149400) 1 NC_006905.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 4149400 glnL 321314004280 glnL Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrogen regulation protein NR(II) YP_218885.1 4148351 R 321314 CDS YP_218886.1 62182469 complement(4149675..4151084) 1 NC_006905.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4151084 glnA 321314004281 glnA Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamine synthetase YP_218886.1 4149675 R 321314 CDS YP_218887.1 62182470 4151460..4153283 1 NC_006905.1 IPR000640: Elongation factor G, C-terminal; IPR000795: Elongation factor, GTP-binding; IPR004161: Elongation factor Tu, domain 2;IPR005225: Small GTP-binding protein domain;IPR006298: GTP-binding protein TypA; GTP-binding protein 4153283 typA 321314004282 typA Salmonella enterica subsp. enterica serovar Choleraesuis str. GTP-binding protein YP_218887.1 4151460 D 321314 CDS YP_218888.1 62182471 complement(4153338..4154072) 1 NC_006905.1 IPR000150: Cof protein; hydrolase 4154072 ybhA 321314004283 ybhA Salmonella enterica subsp. enterica serovar Choleraesuis str. hydrolase YP_218888.1 4153338 R 321314 CDS YP_218889.1 62182472 complement(4154057..4154935) 1 NC_006905.1 inner membrane protein 4154935 321314004284 SC3902 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218889.1 4154057 R 321314 CDS YP_218890.1 62182473 complement(4154932..4156173) 1 NC_006905.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4156173 hemN 321314004285 hemN Salmonella enterica subsp. enterica serovar Choleraesuis str. coproporphyrinogen III oxidase YP_218890.1 4154932 R 321314 CDS YP_218891.1 62182474 complement(4156175..4157050) 1 NC_006905.1 membrane-associated, metal-dependent hydrolase 4157050 321314004286 SC3904 Salmonella enterica subsp. enterica serovar Choleraesuis str. membrane-associated, metal-dependent hydrolase YP_218891.1 4156175 R 321314 CDS YP_218892.1 62182475 complement(4157043..4158068) 1 NC_006905.1 hypothetical protein 4158068 321314004287 SC3905 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218892.1 4157043 R 321314 CDS YP_218893.1 62182476 complement(4158081..4158929) 1 NC_006905.1 hypothetical protein 4158929 321314004288 SC3906 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218893.1 4158081 R 321314 CDS YP_218894.2 229037901 complement(4159086..4159778) 1 NC_006905.1 porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; porin 4159778 ompL 321314004289 ompL Salmonella enterica subsp. enterica serovar Choleraesuis str. porin YP_218894.2 4159086 R 321314 CDS YP_218895.1 62182478 complement(4159846..4161267) 1 NC_006905.1 IPR001927: Sodium:galactoside symporter; GPH family transport protein 4161267 yihO 321314004290 yihO Salmonella enterica subsp. enterica serovar Choleraesuis str. GPH family transport protein YP_218895.1 4159846 R 321314 CDS YP_218896.1 62182479 complement(4161313..4162695) 1 NC_006905.1 IPR001927: Sodium:galactoside symporter; GPH family transport protein 4162695 yihP 321314004291 yihP Salmonella enterica subsp. enterica serovar Choleraesuis str. GPH family transport protein YP_218896.1 4161313 R 321314 CDS YP_218897.1 62182480 complement(4162741..4164777) 1 NC_006905.1 alpha-glucosidase 4164777 yihQ 321314004292 yihQ Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha-glucosidase YP_218897.1 4162741 R 321314 CDS YP_218898.1 62182481 complement(4164821..4165678) 1 NC_006905.1 IPR008183: Aldose 1-epimerase; hypothetical protein 4165678 yihR 321314004293 yihR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218898.1 4164821 R 321314 CDS YP_218899.1 62182482 complement(4166767..4167642) 1 NC_006905.1 aldolase 4167642 yihT 321314004295 yihT Salmonella enterica subsp. enterica serovar Choleraesuis str. aldolase YP_218899.1 4166767 R 321314 CDS YP_218900.1 62182483 complement(4167685..4168560) 1 NC_006905.1 IPR000205: NAD-binding site; IPR002204: 3-hydroxyisobutyrate dehydrogenase; oxidoreductase 4168560 yihU 321314004296 yihU Salmonella enterica subsp. enterica serovar Choleraesuis str. oxidoreductase YP_218900.1 4167685 R 321314 CDS YP_218901.1 62182484 4168725..4169621 1 NC_006905.1 IPR002139: Ribokinase; IPR002173: Carbohydrate kinase, PfkB; sugar kinase 4169621 yihV 321314004297 yihV Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar kinase YP_218901.1 4168725 D 321314 CDS YP_218902.1 62182485 4169655..4170458 1 NC_006905.1 IPR001034: Bacterial regulatory protein, DeoR family; glycerol-3-phosphate regulon repressor 4170458 yihW 321314004298 yihW Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol-3-phosphate regulon repressor YP_218902.1 4169655 D 321314 CDS YP_218903.1 62182486 4170649..4171248 1 NC_006905.1 IPR005833: Haloacid dehalogenase/epoxide hydrolase; phosphatase 4171248 yihX 321314004299 yihX Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphatase YP_218903.1 4170649 D 321314 CDS YP_218904.1 62182487 4171242..4172114 1 NC_006905.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4172114 rbn 321314004300 rbn Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease BN YP_218904.1 4171242 D 321314 CDS YP_218905.1 62182488 4172111..4172548 1 NC_006905.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4172548 yihZ 321314004301 yihZ Salmonella enterica subsp. enterica serovar Choleraesuis str. D-tyrosyl-tRNA(Tyr) deacylase YP_218905.1 4172111 D 321314 CDS YP_218906.1 62182489 4172545..4173534 1 NC_006905.1 IPR000182: GCN5-related N-acetyltransferase; acetyltransferase 4173534 yiiD 321314004302 yiiD Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyltransferase YP_218906.1 4172545 D 321314 CDS YP_218907.1 62182490 complement(4173786..4174463) 1 NC_006905.1 IPR000379: Esterase/lipase/thioesterase; IPR002168: Lipolytic enzyme; acetyl esterase 4174463 bah 321314004303 bah Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl esterase YP_218907.1 4173786 R 321314 CDS YP_218908.1 62182491 complement(4174657..4174881) 1 NC_006905.1 hypothetical protein 4174881 321314004304 SC3921 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218908.1 4174657 R 321314 CDS YP_218909.1 62182492 4174861..4174992 1 NC_006905.1 hypothetical protein 4174992 321314004305 SC3922 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218909.1 4174861 D 321314 CDS YP_218910.1 62182493 4174993..4175283 1 NC_006905.1 MerR family transcriptional regulator 4175283 321314004306 SC3923 Salmonella enterica subsp. enterica serovar Choleraesuis str. MerR family transcriptional regulator YP_218910.1 4174993 D 321314 CDS YP_218911.1 62182494 complement(4175330..4176259) 1 NC_006905.1 required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE 4176259 fdhE 321314004307 fdhE Salmonella enterica subsp. enterica serovar Choleraesuis str. formate dehydrogenase accessory protein FdhE YP_218911.1 4175330 R 321314 CDS YP_218912.1 62182495 complement(4176256..4176891) 1 NC_006905.1 cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma 4176891 fdoI 321314004308 fdoI Salmonella enterica subsp. enterica serovar Choleraesuis str. formate dehydrogenase-O subunit gamma YP_218912.1 4176256 R 321314 CDS YP_218913.1 62182496 complement(4176888..4177790) 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; formate dehydrogenase-O, Fe-S subunit 4177790 fdoH 321314004309 fdoH Salmonella enterica subsp. enterica serovar Choleraesuis str. formate dehydrogenase-O, Fe-S subunit YP_218913.1 4176888 R 321314 CDS YP_218914.1 62182497 4181048..4181884 1 NC_006905.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4181884 fdhD 321314004311 fdhD Salmonella enterica subsp. enterica serovar Choleraesuis str. formate dehydrogenase accessory protein YP_218914.1 4181048 D 321314 CDS YP_218915.1 62182498 complement(4182149..4183180) 1 NC_006905.1 inner membrane lipoprotein 4183180 321314004312 SC3928 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane lipoprotein YP_218915.1 4182149 R 321314 CDS YP_218916.1 62182499 4183363..4184463 1 NC_006905.1 hypothetical protein 4184463 yiiG 321314004313 yiiG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218916.1 4183363 D 321314 CDS YP_218917.1 62182500 complement(4184818..4185141) 1 NC_006905.1 hypothetical protein 4185141 321314004314 SC3930 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218917.1 4184818 R 321314 CDS YP_218918.1 62182501 complement(4185141..4185800) 1 NC_006905.1 IPR004471: AzlC protein; hypothetical protein 4185800 321314004315 SC3931 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218918.1 4185141 R 321314 CDS YP_218919.1 62182502 4185835..4186449 1 NC_006905.1 IPR007113: Cupin domain; hypothetical protein 4186449 321314004316 SC3932 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218919.1 4185835 D 321314 CDS YP_218920.1 62182503 complement(4186538..4186852) 1 NC_006905.1 hypothetical protein 4186852 yiiL 321314004317 yiiL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218920.1 4186538 R 321314 CDS YP_218921.1 62182504 complement(4186849..4187997) 1 NC_006905.1 IPR001670: Iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 4187997 adh2 321314004318 adh2 Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-containing alcohol dehydrogenase YP_218921.1 4186849 R 321314 CDS YP_218922.1 62182505 complement(4188124..4188951) 1 NC_006905.1 rhamnulose-1-phosphate aldolase 4188951 rhaD 321314004319 rhaD Salmonella enterica subsp. enterica serovar Choleraesuis str. rhamnulose-1-phosphate aldolase YP_218922.1 4188124 R 321314 CDS YP_218923.1 62182506 complement(4189094..4190353) 1 NC_006905.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 4190353 rhaA 321314004320 rhaA Salmonella enterica subsp. enterica serovar Choleraesuis str. L-rhamnose isomerase YP_218923.1 4189094 R 321314 CDS YP_218924.1 62182507 complement(4190350..4191819) 1 NC_006905.1 catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase 4191819 rhaB 321314004321 rhaB Salmonella enterica subsp. enterica serovar Choleraesuis str. rhamnulokinase YP_218924.1 4190350 R 321314 CDS YP_218925.1 62182508 4192107..4192943 1 NC_006905.1 activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4192943 rhaS 321314004322 rhaS Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional activator RhaS YP_218925.1 4192107 D 321314 CDS YP_218926.1 62182509 4193096..4193944 1 NC_006905.1 activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4193944 rhaR 321314004323 rhaR Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional activator RhaR YP_218926.1 4193096 D 321314 CDS YP_218927.1 62182510 complement(4193941..4194975) 1 NC_006905.1 transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter 4194975 rhaT 321314004324 rhaT Salmonella enterica subsp. enterica serovar Choleraesuis str. rhamnose-proton symporter YP_218927.1 4193941 R 321314 CDS YP_218928.1 62182511 4194940..4195110 1 NC_006905.1 hypothetical protein 4195110 321314004325 SC3941 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218928.1 4194940 D 321314 CDS YP_218929.1 62182512 4195594..4196277 1 NC_006905.1 hypothetical protein 4196277 yiiY 321314004326 yiiY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218929.1 4195594 D 321314 CDS YP_218930.1 62182513 complement(4196436..4197743) 1 NC_006905.1 C4-dicarboxylate transport system 4197743 ygiK 321314004327 ygiK Salmonella enterica subsp. enterica serovar Choleraesuis str. C4-dicarboxylate transport system YP_218930.1 4196436 R 321314 CDS YP_218931.1 62182514 complement(4197736..4198251) 1 NC_006905.1 C4-dicarboxylate transport system 4198251 321314004328 SC3944 Salmonella enterica subsp. enterica serovar Choleraesuis str. C4-dicarboxylate transport system YP_218931.1 4197736 R 321314 CDS YP_218932.1 62182515 complement(4198270..4199253) 1 NC_006905.1 dicarboxylate-binding periplasmic protein 4199253 yiiZ 321314004329 yiiZ Salmonella enterica subsp. enterica serovar Choleraesuis str. dicarboxylate-binding periplasmic protein YP_218932.1 4198270 R 321314 CDS YP_218933.1 62182516 4199582..4200202 1 NC_006905.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4200202 sodA 321314004330 sodA Salmonella enterica subsp. enterica serovar Choleraesuis str. superoxide dismutase YP_218933.1 4199582 D 321314 CDS YP_218934.2 162139517 4200272..4200961 1 NC_006905.1 IPR005163: 3-alpha domain; IPR005302: MOSC domain; hypothetical protein 4200961 yiiM 321314004331 yiiM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218934.2 4200272 D 321314 CDS YP_218935.1 62182518 4200973..4201368 1 NC_006905.1 inner membrane protein 4201368 321314004332 SC3948 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218935.1 4200973 D 321314 CDS YP_218936.1 62182519 complement(4201419..4202792) 1 NC_006905.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4202792 cpxA 321314004333 cpxA Salmonella enterica subsp. enterica serovar Choleraesuis str. two-component sensor protein YP_218936.1 4201419 R 321314 CDS YP_218937.1 62182520 complement(4202789..4203487) 1 NC_006905.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4203487 cpxR 321314004334 cpxR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator CpxR YP_218937.1 4202789 R 321314 CDS YP_218938.1 62182521 4203638..4204138 1 NC_006905.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4204138 cpxP 321314004335 cpxP Salmonella enterica subsp. enterica serovar Choleraesuis str. repressor CpxP YP_218938.1 4203638 D 321314 CDS YP_218939.1 62182522 4204285..4205187 1 NC_006905.1 member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F 4205187 fieF 321314004336 fieF Salmonella enterica subsp. enterica serovar Choleraesuis str. ferrous iron efflux protein F YP_218939.1 4204285 D 321314 CDS YP_218940.1 62182523 4205372..4206334 1 NC_006905.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4206334 pfkA 321314004337 pfkA Salmonella enterica subsp. enterica serovar Choleraesuis str. 6-phosphofructokinase YP_218940.1 4205372 D 321314 CDS YP_218941.1 62182524 4206538..4207527 1 NC_006905.1 IPR000957: Prokaryotic sulfate-/thiosulfate-binding protein; sulfate transporter subunit 4207527 sbp 321314004338 sbp Salmonella enterica subsp. enterica serovar Choleraesuis str. sulfate transporter subunit YP_218941.1 4206538 D 321314 CDS YP_218942.1 62182525 4207493..4208383 1 NC_006905.1 CDP-diacylglycerol pyrophosphatase 4208383 ushB 321314004339 ushB Salmonella enterica subsp. enterica serovar Choleraesuis str. CDP-diacylglycerol pyrophosphatase YP_218942.1 4207493 D 321314 CDS YP_218943.1 62182526 4208646..4209980 1 NC_006905.1 IPR001927: Sodium:galactoside symporter; Na+:galactoside symporter family permease 4209980 yicJ 321314004340 yicJ Salmonella enterica subsp. enterica serovar Choleraesuis str. Na+:galactoside symporter family permease YP_218943.1 4208646 D 321314 CDS YP_218944.1 62182527 4209991..4210950 1 NC_006905.1 phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4210950 321314004341 SC3957 Salmonella enterica subsp. enterica serovar Choleraesuis str. aminoimidazole riboside kinase YP_218944.1 4209991 D 321314 CDS YP_218945.1 62182528 4210960..4212000 1 NC_006905.1 ADP-ribosylglycohydrolase 4212000 yegU 321314004342 yegU Salmonella enterica subsp. enterica serovar Choleraesuis str. ADP-ribosylglycohydrolase YP_218945.1 4210960 D 321314 CDS YP_218946.1 62182529 4212063..4212785 1 NC_006905.1 IPR000524: Bacterial regulatory protein, GntR family; GntR family transcriptional regulator 4212785 farR 321314004343 farR Salmonella enterica subsp. enterica serovar Choleraesuis str. GntR family transcriptional regulator YP_218946.1 4212063 D 321314 CDS YP_218947.1 62182530 4212883..4213194 1 NC_006905.1 hypothetical protein 4213194 cdh 321314004344 cdh Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218947.1 4212883 D 321314 CDS YP_218948.1 62182531 complement(4213284..4213634) 1 NC_006905.1 IPR007113: Cupin domain; mannose-6-phosphate isomerase 4213634 321314004345 SC3961 Salmonella enterica subsp. enterica serovar Choleraesuis str. mannose-6-phosphate isomerase YP_218948.1 4213284 R 321314 CDS YP_218949.1 62182532 complement(4213648..4215240) 1 NC_006905.1 autoinducer-2 (AI-2) kinase 4215240 ydeV 321314004346 ydeV Salmonella enterica subsp. enterica serovar Choleraesuis str. autoinducer-2 (AI-2) kinase YP_218949.1 4213648 R 321314 CDS YP_218950.1 62182533 complement(4215327..4216286) 1 NC_006905.1 IPR007324: sugar-binding domain; transcriptional repressor 4216286 ydeW 321314004347 ydeW Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional repressor YP_218950.1 4215327 R 321314 CDS YP_218951.1 62182534 4218070..4219113 1 NC_006905.1 IPR001851: Bacterial inner-membrane translocator; sugar ABC transporter membrane subunit 4219113 ydeY 321314004349 ydeY Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar ABC transporter membrane subunit YP_218951.1 4218070 D 321314 CDS YP_218952.1 62182535 4219113..4220111 1 NC_006905.1 IPR001851: Bacterial inner-membrane translocator; sugar ABC transporter membrane subunit 4220111 ydeZ 321314004350 ydeZ Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar ABC transporter membrane subunit YP_218952.1 4219113 D 321314 CDS YP_218953.1 62182536 4220140..4221162 1 NC_006905.1 sugar ABC transporter periplasmic subunit 4221162 yneA 321314004351 yneA Salmonella enterica subsp. enterica serovar Choleraesuis str. sugar ABC transporter periplasmic subunit YP_218953.1 4220140 D 321314 CDS YP_218954.1 62182537 4221191..4222066 1 NC_006905.1 IPR001064: Beta and gamma crystallin; aldolase 4222066 yneB 321314004352 yneB Salmonella enterica subsp. enterica serovar Choleraesuis str. aldolase YP_218954.1 4221191 D 321314 CDS YP_218955.1 62182538 4222110..4222439 1 NC_006905.1 autoinducer-2 (AI-2) modifying protein LsrG 4222439 yneC 321314004353 yneC Salmonella enterica subsp. enterica serovar Choleraesuis str. autoinducer-2 (AI-2) modifying protein LsrG YP_218955.1 4222110 D 321314 CDS YP_218956.1 62182539 4222449..4223213 1 NC_006905.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; epimerase 4223213 rpe 321314004354 rpe Salmonella enterica subsp. enterica serovar Choleraesuis str. epimerase YP_218956.1 4222449 D 321314 CDS YP_218957.1 62182540 complement(4223305..4224072) 1 NC_006905.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4224072 tpiA 321314004355 tpiA Salmonella enterica subsp. enterica serovar Choleraesuis str. triosephosphate isomerase YP_218957.1 4223305 R 321314 CDS YP_218958.1 62182541 complement(4224185..4224784) 1 NC_006905.1 hypothetical protein 4224784 yiiQ 321314004356 yiiQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218958.1 4224185 R 321314 CDS YP_218959.1 62182542 4224882..4225310 1 NC_006905.1 hypothetical protein 4225310 yiiR 321314004357 yiiR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218959.1 4224882 D 321314 CDS YP_218960.1 62182543 complement(4225416..4226162) 1 NC_006905.1 IPR000531: TonB-dependent receptor protein; ferredoxin-NADP reductase 4226162 fpr 321314004358 fpr Salmonella enterica subsp. enterica serovar Choleraesuis str. ferredoxin-NADP reductase YP_218960.1 4225416 R 321314 CDS YP_218961.2 162139516 complement(4226259..4227269) 1 NC_006905.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 4227269 glpX 321314004359 glpX Salmonella enterica subsp. enterica serovar Choleraesuis str. fructose 1,6-bisphosphatase II YP_218961.2 4226259 R 321314 CDS YP_218962.1 62182545 complement(4227381..4228889) 1 NC_006905.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4228889 glpK 321314004360 glpK Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol kinase YP_218962.1 4227381 R 321314 CDS YP_218963.1 62182546 complement(4228910..4229755) 1 NC_006905.1 IPR000425: MIP family; MIP channel protein 4229755 glpF 321314004361 glpF Salmonella enterica subsp. enterica serovar Choleraesuis str. MIP channel protein YP_218963.1 4228910 R 321314 CDS YP_218964.1 62182547 4230154..4230393 1 NC_006905.1 hypothetical protein 4230393 yiiU 321314004362 yiiU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218964.1 4230154 D 321314 CDS YP_218965.1 62182548 complement(4230615..4231100) 1 NC_006905.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4231100 menG 321314004363 menG Salmonella enterica subsp. enterica serovar Choleraesuis str. ribonuclease activity regulator protein RraA YP_218965.1 4230615 R 321314 CDS YP_218966.1 62182549 complement(4231193..4232122) 1 NC_006905.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4232122 menA 321314004364 menA Salmonella enterica subsp. enterica serovar Choleraesuis str. 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_218966.1 4231193 R 321314 CDS YP_218967.1 62182550 complement(4232189..4233520) 1 NC_006905.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4233520 hslU 321314004365 hslU Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent protease ATP-binding subunit HslU YP_218967.1 4232189 R 321314 CDS YP_218968.1 62182551 complement(4233530..4234060) 1 NC_006905.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4234060 hslV 321314004366 hslV Salmonella enterica subsp. enterica serovar Choleraesuis str. ATP-dependent protease peptidase subunit YP_218968.1 4233530 R 321314 CDS YP_218969.1 62182552 complement(4234152..4235147) 1 NC_006905.1 cell division protein FtsN 4235147 ftsN 321314004367 ftsN Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein FtsN YP_218969.1 4234152 R 321314 CDS YP_218970.2 162139515 complement(4235241..4236266) 1 NC_006905.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR 4236266 cytR 321314004368 cytR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator CytR YP_218970.2 4235241 R 321314 CDS YP_218971.1 62182554 complement(4236421..4238619) 1 NC_006905.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 4238619 priA 321314004369 priA Salmonella enterica subsp. enterica serovar Choleraesuis str. primosome assembly protein PriA YP_218971.1 4236421 R 321314 CDS YP_218972.2 162139514 4238823..4239035 1 NC_006905.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4239035 rpmE 321314004370 rpmE Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L31 YP_218972.2 4238823 D 321314 CDS YP_218973.1 62182556 4239137..4239538 1 NC_006905.1 hypothetical protein 4239538 321314004371 SC3986 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218973.1 4239137 D 321314 CDS YP_218974.1 62182557 4239709..4240392 1 NC_006905.1 integrase 4240392 yis2 321314004372 yis2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_218974.1 4239709 D 321314 CDS YP_218975.1 62182558 complement(4240396..4241058) 1 NC_006905.1 outer membrane lipoprotein 4241058 321314004373 SC3988 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_218975.1 4240396 R 321314 CDS YP_218976.1 62182559 complement(4241259..4243049) 1 NC_006905.1 arylsulfate sulfotransferase 4243049 321314004374 SC3989 Salmonella enterica subsp. enterica serovar Choleraesuis str. arylsulfate sulfotransferase YP_218976.1 4241259 R 321314 CDS YP_218977.1 62182560 complement(4243507..4243824) 1 NC_006905.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4243824 metJ 321314004375 metJ Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional repressor protein MetJ YP_218977.1 4243507 R 321314 CDS YP_218978.1 62182561 4244089..4245249 1 NC_006905.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4245249 metB 321314004376 metB Salmonella enterica subsp. enterica serovar Choleraesuis str. cystathionine gamma-synthase YP_218978.1 4244089 D 321314 CDS YP_218979.1 62182562 4245252..4247684 1 NC_006905.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4247684 metL 321314004377 metL Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional aspartate kinase II/homoserine dehydrogenase II YP_218979.1 4245252 D 321314 CDS YP_218980.1 62182563 complement(4247800..4248657) 1 NC_006905.1 IPR006685: Mechanosensitive (MS) ion channel; IPR006686: Mechanosensitive (MS) ion channel subdomain; IPR008910: Conserved TM helix; inner membrane protein 4248657 321314004378 SC3993 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_218980.1 4247800 R 321314 CDS YP_218981.1 62182564 complement(4248660..4249358) 1 NC_006905.1 hypothetical protein 4249358 321314004379 SC3994 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218981.1 4248660 R 321314 CDS YP_218982.1 62182565 complement(4249367..4249657) 1 NC_006905.1 hypothetical protein 4249657 321314004380 SC3995 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218982.1 4249367 R 321314 CDS YP_218983.1 62182566 complement(4249892..4251016) 1 NC_006905.1 hypothetical protein 4251016 321314004381 SC3996 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218983.1 4249892 R 321314 CDS YP_218984.1 62182567 4252902..4253792 1 NC_006905.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4253792 metF 321314004383 metF Salmonella enterica subsp. enterica serovar Choleraesuis str. 5,10-methylenetetrahydrofolate reductase YP_218984.1 4252902 D 321314 CDS YP_218985.1 62182568 4253957..4256137 1 NC_006905.1 IPR000763: Bacterial haem catalase/peroxidase; IPR002016: Haem peroxidase; IPR002207: Plant ascorbate peroxidase; catalase 4256137 katG 321314004384 katG Salmonella enterica subsp. enterica serovar Choleraesuis str. catalase YP_218985.1 4253957 D 321314 CDS YP_218986.1 62182569 complement(4256195..4256818) 1 NC_006905.1 hypothetical protein 4256818 yijF 321314004385 yijF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218986.1 4256195 R 321314 CDS YP_218987.1 62182570 complement(4257077..4258174) 1 NC_006905.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 4258174 gldA 321314004386 gldA Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol dehydrogenase YP_218987.1 4257077 R 321314 CDS YP_218988.1 62182571 complement(4258186..4258848) 1 NC_006905.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 4258848 talC 321314004387 talC Salmonella enterica subsp. enterica serovar Choleraesuis str. fructose-6-phosphate aldolase YP_218988.1 4258186 R 321314 CDS YP_218989.1 62182572 complement(4258859..4261360) 1 NC_006905.1 IPR000032: Phosphocarrier HPr protein; IPR000121: PEP-utilizing enzyme; IPR001020: HPr histidine phosphorylation site;IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;IPR008279: PEP-utilising enzyme, mobile region; general PTS family protein I 4261360 ptsA 321314004388 ptsA Salmonella enterica subsp. enterica serovar Choleraesuis str. general PTS family protein I YP_218989.1 4258859 R 321314 CDS YP_218990.1 62182573 4261669..4262748 1 NC_006905.1 FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; fructose-like permease EIIC subunit 2 4262748 frwC 321314004389 frwC Salmonella enterica subsp. enterica serovar Choleraesuis str. fructose-like permease EIIC subunit 2 YP_218990.1 4261669 D 321314 CDS YP_218991.1 62182574 4262763..4263083 1 NC_006905.1 FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; PTS system fructose-like transporter subunit EIIB 4263083 frwB 321314004390 frwB Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system fructose-like transporter subunit EIIB YP_218991.1 4262763 D 321314 CDS YP_218992.1 62182575 4265444..4266322 1 NC_006905.1 IPR001989: Radical-activating enzyme; pyruvate formate lyase II activase 4266322 pflC 321314004392 pflC Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate formate lyase II activase YP_218992.1 4265444 D 321314 CDS YP_218993.1 62182576 4266324..4266677 1 NC_006905.1 FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; fructose-like phosphotransferase EIIB subunit 3 4266677 frwD 321314004393 frwD Salmonella enterica subsp. enterica serovar Choleraesuis str. fructose-like phosphotransferase EIIB subunit 3 YP_218993.1 4266324 D 321314 CDS YP_218994.1 62182577 complement(4266664..4267515) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; paral regulator 4267515 yijO 321314004394 yijO Salmonella enterica subsp. enterica serovar Choleraesuis str. paral regulator YP_218994.1 4266664 R 321314 CDS YP_218995.1 62182578 complement(4267676..4269409) 1 NC_006905.1 hypothetical protein 4269409 yijP 321314004395 yijP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_218995.1 4267676 R 321314 CDS YP_218996.1 62182579 complement(4269620..4272271) 1 NC_006905.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4272271 ppc 321314004396 ppc Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoenolpyruvate carboxylase YP_218996.1 4269620 R 321314 CDS YP_218997.1 62182580 complement(4272640..4273791) 1 NC_006905.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4273791 argE 321314004397 argE Salmonella enterica subsp. enterica serovar Choleraesuis str. acetylornithine deacetylase YP_218997.1 4272640 R 321314 CDS YP_218998.1 62182581 4273880..4274884 1 NC_006905.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4274884 argC 321314004398 argC Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetyl-gamma-glutamyl-phosphate reductase YP_218998.1 4273880 D 321314 CDS YP_218999.1 62182582 4274895..4275668 1 NC_006905.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4275668 argB 321314004399 argB Salmonella enterica subsp. enterica serovar Choleraesuis str. acetylglutamate kinase YP_218999.1 4274895 D 321314 CDS YP_219000.1 62182583 4275786..4277162 1 NC_006905.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4277162 argH 321314004400 argH Salmonella enterica subsp. enterica serovar Choleraesuis str. argininosuccinate lyase YP_219000.1 4275786 D 321314 CDS YP_219001.1 62182584 4277449..4278366 1 NC_006905.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4278366 oxyR 321314004401 oxyR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator OxyR YP_219001.1 4277449 D 321314 CDS YP_219002.1 62182585 complement(4278349..4279749) 1 NC_006905.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4279749 udhA 321314004402 udhA Salmonella enterica subsp. enterica serovar Choleraesuis str. soluble pyridine nucleotide transhydrogenase YP_219002.1 4278349 R 321314 CDS YP_219003.1 62182586 4279948..4280583 1 NC_006905.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 4280583 yijC 321314004403 yijC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional repressor FabR YP_219003.1 4279948 D 321314 CDS YP_219004.1 62182587 4280599..4280958 1 NC_006905.1 hypothetical protein 4280958 yijD 321314004404 yijD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219004.1 4280599 D 321314 CDS YP_219005.1 62182588 complement(4281005..4282105) 1 NC_006905.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4282105 trmA 321314004405 trmA Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA (uracil-5-)-methyltransferase YP_219005.1 4281005 R 321314 CDS YP_219006.2 229037900 4282479..4284323 1 NC_006905.1 involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4284323 btuB 321314004406 btuB Salmonella enterica subsp. enterica serovar Choleraesuis str. vitamin B12/cobalamin outer membrane transporter YP_219006.2 4282479 D 321314 CDS YP_219007.1 62182590 4284268..4285119 1 NC_006905.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4285119 murI 321314004407 murI Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate racemase YP_219007.1 4284268 D 321314 CDS YP_219012.1 62182595 4290689..4291717 1 NC_006905.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4291717 murB 321314004412 murB Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetylenolpyruvoylglucosamine reductase YP_219012.1 4290689 D 321314 CDS YP_219013.1 62182596 4291714..4292676 1 NC_006905.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 4292676 birA 321314004413 birA Salmonella enterica subsp. enterica serovar Choleraesuis str. biotin--protein ligase YP_219013.1 4291714 D 321314 CDS YP_219014.1 62182597 complement(4292711..4293667) 1 NC_006905.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4293667 coaA 321314004414 coaA Salmonella enterica subsp. enterica serovar Choleraesuis str. pantothenate kinase YP_219014.1 4292711 R 321314 CDS YP_219015.1 62182598 complement(4293870..4294043) 1 NC_006905.1 hypothetical protein 4294043 gns 321314004415 gns Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219015.1 4293870 R 321314 CDS YP_219016.1 62182599 4294246..4294362 1 NC_006905.1 hypothetical protein 4294362 321314004418 SC4029 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219016.1 4294246 D 321314 CDS YP_219017.1 62182600 4294620..4295804 1 NC_006905.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4295804 tuf 321314004421 tuf Salmonella enterica subsp. enterica serovar Choleraesuis str. elongation factor Tu YP_219017.1 4294620 D 321314 CDS YP_219018.1 62182601 4296034..4296417 1 NC_006905.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4296417 secE 321314004422 secE Salmonella enterica subsp. enterica serovar Choleraesuis str. preprotein translocase subunit SecE YP_219018.1 4296034 D 321314 CDS YP_219019.1 62182602 4296419..4296964 1 NC_006905.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4296964 nusG 321314004423 nusG Salmonella enterica subsp. enterica serovar Choleraesuis str. transcription antitermination protein NusG YP_219019.1 4296419 D 321314 CDS YP_219020.1 62182603 4297122..4297550 1 NC_006905.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4297550 rplK 321314004424 rplK Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L11 YP_219020.1 4297122 D 321314 CDS YP_219021.1 62182604 4297554..4298258 1 NC_006905.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4298258 rplA 321314004425 rplA Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L1 YP_219021.1 4297554 D 321314 CDS YP_219022.1 62182605 4298678..4299175 1 NC_006905.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4299175 rplJ 321314004426 rplJ Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L10 YP_219022.1 4298678 D 321314 CDS YP_219023.2 162139513 4299242..4299607 1 NC_006905.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4299607 rplL 321314004427 rplL Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L7/L12 YP_219023.2 4299242 D 321314 CDS YP_219024.1 62182607 4299811..4303953 1 NC_006905.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4303953 rpoB 321314004428 rpoB Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-directed RNA polymerase subunit beta YP_219024.1 4299811 D 321314 CDS YP_219025.1 62182608 4304030..4308253 1 NC_006905.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4308253 rpoC 321314004429 rpoC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-directed RNA polymerase subunit beta' YP_219025.1 4304030 D 321314 CDS YP_219026.1 62182609 4308295..4308621 1 NC_006905.1 inner membrane protein 4308621 321314004430 SC4039 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219026.1 4308295 D 321314 CDS YP_219027.1 62182610 4309366..4310376 1 NC_006905.1 hypothetical protein 4310376 321314004432 SC4040 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219027.1 4309366 D 321314 CDS YP_219028.1 62182611 complement(4310597..4311730) 1 NC_006905.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 4311730 thiH 321314004433 thiH Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine biosynthesis protein ThiH YP_219028.1 4310597 R 321314 CDS YP_219029.2 162139512 complement(4311727..4312497) 1 NC_006905.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4312497 thiG 321314004434 thiG Salmonella enterica subsp. enterica serovar Choleraesuis str. thiazole synthase YP_219029.2 4311727 R 321314 CDS YP_219030.1 62182613 complement(4312680..4313438) 1 NC_006905.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 4313438 thiF 321314004435 thiF Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine biosynthesis protein ThiF YP_219030.1 4312680 R 321314 CDS YP_219031.1 62182614 complement(4313431..4314066) 1 NC_006905.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 4314066 thiE 321314004436 thiE Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine-phosphate pyrophosphorylase YP_219031.1 4313431 R 321314 CDS YP_219032.1 62182615 complement(4314066..4315961) 1 NC_006905.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4315961 thiC 321314004437 thiC Salmonella enterica subsp. enterica serovar Choleraesuis str. thiamine biosynthesis protein ThiC YP_219032.1 4314066 R 321314 CDS YP_219033.1 62182616 complement(4316325..4316813) 1 NC_006905.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4316813 rsd 321314004438 rsd Salmonella enterica subsp. enterica serovar Choleraesuis str. anti-RNA polymerase sigma 70 factor YP_219033.1 4316325 R 321314 CDS YP_219034.1 62182617 4316906..4317679 1 NC_006905.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4317679 nudC 321314004439 nudC Salmonella enterica subsp. enterica serovar Choleraesuis str. NADH pyrophosphatase YP_219034.1 4316906 D 321314 CDS YP_219035.1 62182618 4317720..4318784 1 NC_006905.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4318784 hemE 321314004440 hemE Salmonella enterica subsp. enterica serovar Choleraesuis str. uroporphyrinogen decarboxylase YP_219035.1 4317720 D 321314 CDS YP_219036.1 62182619 4318794..4319465 1 NC_006905.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 4319465 nfi 321314004441 nfi Salmonella enterica subsp. enterica serovar Choleraesuis str. endonuclease V YP_219036.1 4318794 D 321314 CDS YP_219037.1 62182620 4319507..4320097 1 NC_006905.1 hypothetical protein 4320097 yjaG 321314004442 yjaG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219037.1 4319507 D 321314 CDS YP_219038.1 62182621 4320284..4320556 1 NC_006905.1 histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4320556 hupA 321314004443 hupA Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator HU subunit alpha YP_219038.1 4320284 D 321314 CDS YP_219039.1 62182622 4320568..4321260 1 NC_006905.1 hypothetical protein 4321260 yjaH 321314004444 yjaH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219039.1 4320568 D 321314 CDS YP_219040.1 62182623 complement(4321302..4321757) 1 NC_006905.1 zinc resistance protein 4321757 zraP 321314004445 zraP Salmonella enterica subsp. enterica serovar Choleraesuis str. zinc resistance protein YP_219040.1 4321302 R 321314 CDS YP_219041.1 62182624 4321744..4323408 1 NC_006905.1 IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensor protein ZraS 4323408 hydH 321314004446 hydH Salmonella enterica subsp. enterica serovar Choleraesuis str. sensor protein ZraS YP_219041.1 4321744 D 321314 CDS YP_219042.1 62182625 4323414..4324739 1 NC_006905.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4324739 hydG 321314004447 hydG Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulatory protein ZraR YP_219042.1 4323414 D 321314 CDS YP_219043.1 62182626 complement(4324776..4326026) 1 NC_006905.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4326026 purD 321314004448 purD Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoribosylamine--glycine ligase YP_219043.1 4324776 R 321314 CDS YP_219046.1 62182629 4333375..4333605 1 NC_006905.1 hypothetical protein 4333605 321314004454 SC4059 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219046.1 4333375 D 321314 CDS YP_219047.1 62182630 complement(4333596..4334033) 1 NC_006905.1 hypothetical protein 4334033 yjaB 321314004455 yjaB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219047.1 4333596 R 321314 CDS YP_219048.1 62182631 4334190..4335119 1 NC_006905.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4335119 metA 321314004456 metA Salmonella enterica subsp. enterica serovar Choleraesuis str. homoserine O-succinyltransferase YP_219048.1 4334190 D 321314 CDS YP_219049.1 62182632 4335388..4336989 1 NC_006905.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4336989 aceB 321314004457 aceB Salmonella enterica subsp. enterica serovar Choleraesuis str. malate synthase YP_219049.1 4335388 D 321314 CDS YP_219050.1 62182633 4337021..4338325 1 NC_006905.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 4338325 aceA 321314004458 aceA Salmonella enterica subsp. enterica serovar Choleraesuis str. isocitrate lyase YP_219050.1 4337021 D 321314 CDS YP_219051.1 62182634 4338427..4340178 1 NC_006905.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 4340178 aceK 321314004459 aceK Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional isocitrate dehydrogenase kinase/phosphatase YP_219051.1 4338427 D 321314 CDS YP_219052.1 62182635 complement(4340142..4340576) 1 NC_006905.1 hypothetical protein 4340576 321314004460 SC4065 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219052.1 4340142 R 321314 CDS YP_219053.1 62182636 complement(4340560..4341384) 1 NC_006905.1 regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; IclR family transcriptional regulator 4341384 iclR 321314004461 iclR Salmonella enterica subsp. enterica serovar Choleraesuis str. IclR family transcriptional regulator YP_219053.1 4340560 R 321314 CDS YP_219054.2 162139511 4341694..4345377 1 NC_006905.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4345377 metH 321314004462 metH Salmonella enterica subsp. enterica serovar Choleraesuis str. B12-dependent methionine synthase YP_219054.2 4341694 D 321314 CDS YP_219056.1 62182639 complement(4348688..4349377) 1 NC_006905.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 4349377 pepE 321314004464 pepE Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidase E YP_219056.1 4348688 R 321314 CDS YP_219057.1 62182640 4349449..4349550 1 NC_006905.1 hypothetical protein 4349550 321314004465 SC4070 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219057.1 4349449 D 321314 CDS YP_219058.1 62182641 4349585..4350124 1 NC_006905.1 hypothetical protein 4350124 yaiL 321314004466 yaiL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219058.1 4349585 D 321314 CDS YP_219059.1 62182642 4350171..4351040 1 NC_006905.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4351040 yjbC 321314004467 yjbC Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA pseudouridine synthase F YP_219059.1 4350171 D 321314 CDS YP_219060.1 62182643 complement(4351037..4351336) 1 NC_006905.1 hypothetical protein 4351336 yjbD 321314004468 yjbD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219060.1 4351037 R 321314 CDS YP_219061.1 62182644 complement(4351407..4352348) 1 NC_006905.1 Na+-dependent transporter 4352348 ybaS 321314004469 ybaS Salmonella enterica subsp. enterica serovar Choleraesuis str. Na+-dependent transporter YP_219061.1 4351407 R 321314 CDS YP_219062.1 62182645 4352466..4352621 1 NC_006905.1 hypothetical protein 4352621 321314004470 SC4075 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219062.1 4352466 D 321314 CDS YP_219063.1 62182646 complement(4352610..4353338) 1 NC_006905.1 hypothetical protein 4353338 321314004471 SC4076 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219063.1 4352610 R 321314 CDS YP_219064.1 62182647 complement(4353535..4353885) 1 NC_006905.1 inner membrane protein 4353885 321314004472 SC4077 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219064.1 4353535 R 321314 CDS YP_219065.1 62182648 complement(4354076..4354531) 1 NC_006905.1 hypothetical protein 4354531 321314004473 SC4078 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219065.1 4354076 R 321314 CDS YP_219066.1 62182649 complement(4354528..4355142) 1 NC_006905.1 hypothetical protein 4355142 321314004474 SC4079 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219066.1 4354528 R 321314 CDS YP_219067.1 62182650 complement(4355149..4356807) 1 NC_006905.1 IPR000531: TonB-dependent receptor protein; phage tail fiber protein H 4356807 vph 321314004475 vph Salmonella enterica subsp. enterica serovar Choleraesuis str. phage tail fiber protein H YP_219067.1 4355149 R 321314 CDS YP_219068.1 62182651 complement(4356810..4357442) 1 NC_006905.1 phage tail protein 4357442 vpi 321314004476 vpi Salmonella enterica subsp. enterica serovar Choleraesuis str. phage tail protein YP_219068.1 4356810 R 321314 CDS YP_219069.1 62182652 complement(4357435..4358550) 1 NC_006905.1 phage baseplate protein 4358550 vbp 321314004477 vbp Salmonella enterica subsp. enterica serovar Choleraesuis str. phage baseplate protein YP_219069.1 4357435 R 321314 CDS YP_219070.1 62182653 complement(4358541..4358900) 1 NC_006905.1 phage baseplate protein 4358900 vbp 321314004478 vbp Salmonella enterica subsp. enterica serovar Choleraesuis str. phage baseplate protein YP_219070.1 4358541 R 321314 CDS YP_219071.1 62182654 complement(4360611..4361540) 1 NC_006905.1 IPR001173: Glycosyl transferase, family 2; phage glycosyltransferase 4361540 gtrB 321314004480 gtrB Salmonella enterica subsp. enterica serovar Choleraesuis str. phage glycosyltransferase YP_219071.1 4360611 R 321314 CDS YP_219072.1 62182655 complement(4361537..4361911) 1 NC_006905.1 phage glucose translocase 4361911 gtrA 321314004481 gtrA Salmonella enterica subsp. enterica serovar Choleraesuis str. phage glucose translocase YP_219072.1 4361537 R 321314 CDS YP_219073.1 62182656 complement(4362226..4362948) 1 NC_006905.1 phage baseplate component 4362948 321314004482 SC4086 Salmonella enterica subsp. enterica serovar Choleraesuis str. phage baseplate component YP_219073.1 4362226 R 321314 CDS YP_219074.1 62182657 complement(4362958..4364001) 1 NC_006905.1 hypothetical protein 4364001 321314004483 SC4087 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219074.1 4362958 R 321314 CDS YP_219075.1 62182658 complement(4363989..4364198) 1 NC_006905.1 inner membrane protein 4364198 321314004484 SC4088 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219075.1 4363989 R 321314 CDS YP_219076.1 62182659 complement(4364198..4365151) 1 NC_006905.1 methyl-accepting chemotaxis protein 4365151 mac 321314004485 mac Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting chemotaxis protein YP_219076.1 4364198 R 321314 CDS YP_219077.1 62182660 complement(4367690..4368007) 1 NC_006905.1 similar to orf4 in Pectobacterium carotovorum subsp. carotovorum; hypothetical protein 4368007 321314004487 SC4090 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219077.1 4367690 R 321314 CDS YP_219078.1 62182661 complement(4368059..4368583) 1 NC_006905.1 phage tail core protein 4368583 vtc 321314004488 vtc Salmonella enterica subsp. enterica serovar Choleraesuis str. phage tail core protein YP_219078.1 4368059 R 321314 CDS YP_219079.1 62182662 complement(4368583..4370010) 1 NC_006905.1 IPR007067: Phage tail sheath protein; phage tail sheath protein 4370010 vts 321314004489 vts Salmonella enterica subsp. enterica serovar Choleraesuis str. phage tail sheath protein YP_219079.1 4368583 R 321314 CDS YP_219080.1 62182663 complement(4370000..4370197) 1 NC_006905.1 hypothetical protein 4370197 321314004490 SC4093 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219080.1 4370000 R 321314 CDS YP_219081.1 62182664 complement(4370194..4370649) 1 NC_006905.1 hypothetical protein 4370649 321314004491 SC4094 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219081.1 4370194 R 321314 CDS YP_219082.1 62182665 complement(4370808..4371122) 1 NC_006905.1 inner membrane protein 4371122 321314004492 SC4095 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219082.1 4370808 R 321314 CDS YP_219083.1 62182666 complement(4371135..4371740) 1 NC_006905.1 soluble lytic murein transglycosylase 4371740 lmt 321314004493 lmt Salmonella enterica subsp. enterica serovar Choleraesuis str. soluble lytic murein transglycosylase YP_219083.1 4371135 R 321314 CDS YP_219084.1 62182667 complement(4371743..4372030) 1 NC_006905.1 inner membrane protein 4372030 321314004494 SC4097 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219084.1 4371743 R 321314 CDS YP_219085.1 62182668 4372626..4372952 1 NC_006905.1 hypothetical protein 4372952 321314004495 SC4098 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219085.1 4372626 D 321314 CDS YP_219086.1 62182669 complement(4373084..4374433) 1 NC_006905.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase 4374433 321314004496 SC4099 Salmonella enterica subsp. enterica serovar Choleraesuis str. aspartate kinase YP_219086.1 4373084 R 321314 CDS YP_219087.1 62182670 4374778..4376427 1 NC_006905.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4376427 pgi 321314004497 pgi Salmonella enterica subsp. enterica serovar Choleraesuis str. glucose-6-phosphate isomerase YP_219087.1 4374778 D 321314 CDS YP_219088.1 62182671 4376871..4377113 1 NC_006905.1 hypothetical protein 4377113 yjbE 321314004498 yjbE Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219088.1 4376871 D 321314 CDS YP_219089.1 62182672 4377147..4377815 1 NC_006905.1 outer membrane lipoprotein 4377815 yjbF 321314004499 yjbF Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_219089.1 4377147 D 321314 CDS YP_219090.1 62182673 4377812..4378549 1 NC_006905.1 hypothetical protein 4378549 yjbG 321314004500 yjbG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219090.1 4377812 D 321314 CDS YP_219091.1 62182674 4378549..4380645 1 NC_006905.1 outer membrane lipoprotein 4380645 yjbH 321314004501 yjbH Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_219091.1 4378549 D 321314 CDS YP_219092.1 62182675 4380788..4381198 1 NC_006905.1 phosphate-starvation-inducible protein PsiE 4381198 yjbA 321314004502 yjbA Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphate-starvation-inducible protein PsiE YP_219092.1 4380788 D 321314 CDS YP_219093.1 62182676 complement(4381364..4382254) 1 NC_006905.1 with MalKFE is involved in the transport of maltose into the cell; maltose ABC transporter permease 4382254 malG 321314004503 malG Salmonella enterica subsp. enterica serovar Choleraesuis str. maltose ABC transporter permease YP_219093.1 4381364 R 321314 CDS YP_219094.1 62182677 complement(4382269..4383813) 1 NC_006905.1 with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 4383813 malF 321314004504 malF Salmonella enterica subsp. enterica serovar Choleraesuis str. maltose transporter membrane protein YP_219094.1 4382269 R 321314 CDS YP_219095.2 162139510 complement(4383945..4385135) 1 NC_006905.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein 4385135 malE 321314004505 malE Salmonella enterica subsp. enterica serovar Choleraesuis str. maltose ABC transporter substrate-binding protein YP_219095.2 4383945 R 321314 CDS YP_219096.1 62182679 4385497..4386606 1 NC_006905.1 with malEFG is involved in import of maltose/maltodextrin; maltose ABC transporter ATP-binding protein 4386606 malK 321314004506 malK Salmonella enterica subsp. enterica serovar Choleraesuis str. maltose ABC transporter ATP-binding protein YP_219096.1 4385497 D 321314 CDS YP_219097.1 62182680 4386695..4388053 1 NC_006905.1 porin involved in the transport of maltose and maltodextrins; maltoporin 4388053 lamB 321314004507 lamB Salmonella enterica subsp. enterica serovar Choleraesuis str. maltoporin YP_219097.1 4386695 D 321314 CDS YP_219098.1 62182681 4388217..4389134 1 NC_006905.1 maltose regulon periplasmic protein 4389134 malM 321314004508 malM Salmonella enterica subsp. enterica serovar Choleraesuis str. maltose regulon periplasmic protein YP_219098.1 4388217 D 321314 CDS YP_219099.1 62182682 4389315..4389812 1 NC_006905.1 catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4389812 ubiC 321314004509 ubiC Salmonella enterica subsp. enterica serovar Choleraesuis str. chorismate pyruvate lyase YP_219099.1 4389315 D 321314 CDS YP_219100.1 62182683 4389826..4390698 1 NC_006905.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4390698 ubiA 321314004510 ubiA Salmonella enterica subsp. enterica serovar Choleraesuis str. 4-hydroxybenzoate octaprenyltransferase YP_219100.1 4389826 D 321314 CDS YP_219101.1 62182684 complement(4390797..4393217) 1 NC_006905.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4393217 plsB 321314004511 plsB Salmonella enterica subsp. enterica serovar Choleraesuis str. glycerol-3-phosphate acyltransferase YP_219101.1 4390797 R 321314 CDS YP_219102.1 62182685 4393388..4393756 1 NC_006905.1 IPR000829: Prokaryotic diacylglycerol kinase; diacylglycerol kinase 4393756 dgkA 321314004512 dgkA Salmonella enterica subsp. enterica serovar Choleraesuis str. diacylglycerol kinase YP_219102.1 4393388 D 321314 CDS YP_219103.1 62182686 4393865..4394473 1 NC_006905.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4394473 lexA 321314004513 lexA Salmonella enterica subsp. enterica serovar Choleraesuis str. LexA repressor YP_219103.1 4393865 D 321314 CDS YP_219104.1 62182687 4394652..4395977 1 NC_006905.1 DNA-damage-inducible SOS response protein 4395977 dinF 321314004514 dinF Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-damage-inducible SOS response protein YP_219104.1 4394652 D 321314 CDS YP_219105.1 62182688 4395959..4396087 1 NC_006905.1 hypothetical protein 4396087 321314004515 SC4118 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219105.1 4395959 D 321314 CDS YP_219106.1 62182689 4396106..4396318 1 NC_006905.1 unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4396318 yjbJ 321314004516 yjbJ Salmonella enterica subsp. enterica serovar Choleraesuis str. stress-response protein YP_219106.1 4396106 D 321314 CDS YP_219107.1 62182690 complement(4396418..4396933) 1 NC_006905.1 Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor 4396933 zur 321314004517 zur Salmonella enterica subsp. enterica serovar Choleraesuis str. zinc uptake transcriptional repressor YP_219107.1 4396418 R 321314 CDS YP_219108.1 62182691 4397180..4398490 1 NC_006905.1 hypothetical protein 4398490 321314004518 SC4121 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219108.1 4397180 D 321314 CDS YP_219109.1 62182692 4398578..4399576 1 NC_006905.1 IPR001269: Protein of unknown function UPF0034; tRNA-dihydrouridine synthase A 4399576 yjbN 321314004519 yjbN Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA-dihydrouridine synthase A YP_219109.1 4398578 D 321314 CDS YP_219110.1 62182693 4399744..4399986 1 NC_006905.1 coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4399986 pspG 321314004520 pspG Salmonella enterica subsp. enterica serovar Choleraesuis str. phage shock protein G YP_219110.1 4399744 D 321314 CDS YP_219111.1 62182694 complement(4400161..4401144) 1 NC_006905.1 IPR002364: Quinone oxidoreductase/zeta-crystallin; quinone oxidoreductase 4401144 qor 321314004521 qor Salmonella enterica subsp. enterica serovar Choleraesuis str. quinone oxidoreductase YP_219111.1 4400161 R 321314 CDS YP_219112.1 62182695 4401209..4402624 1 NC_006905.1 unwinds double stranded DNA; replicative DNA helicase 4402624 dnaB 321314004522 dnaB Salmonella enterica subsp. enterica serovar Choleraesuis str. replicative DNA helicase YP_219112.1 4401209 D 321314 CDS YP_219113.1 62182696 4402656..4403735 1 NC_006905.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4403735 alr 321314004523 alr Salmonella enterica subsp. enterica serovar Choleraesuis str. alanine racemase YP_219113.1 4402656 D 321314 CDS YP_219114.2 162139509 4403921..4405114 1 NC_006905.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4405114 tyrB 321314004524 tyrB Salmonella enterica subsp. enterica serovar Choleraesuis str. aromatic amino acid aminotransferase YP_219114.2 4403921 D 321314 CDS YP_219115.1 62182698 4405301..4406014 1 NC_006905.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4406014 aphA 321314004525 aphA Salmonella enterica subsp. enterica serovar Choleraesuis str. acid phosphatase/phosphotransferase YP_219115.1 4405301 D 321314 CDS YP_219116.1 62182699 4406143..4406559 1 NC_006905.1 IPR001602: Protein of unknown function UPF0047; hypothetical protein 4406559 yjbQ 321314004526 yjbQ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219116.1 4406143 D 321314 CDS YP_219117.1 62182700 4406562..4406918 1 NC_006905.1 hypothetical protein 4406918 yjbR 321314004527 yjbR Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219117.1 4406562 D 321314 CDS YP_219118.1 62182701 complement(4406919..4407257) 1 NC_006905.1 hypothetical protein 4407257 321314004528 SC4131 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219118.1 4406919 R 321314 CDS YP_219119.1 62182702 complement(4407244..4407699) 1 NC_006905.1 outer membrane lipoprotein 4407699 321314004529 SC4132 Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein YP_219119.1 4407244 R 321314 CDS YP_219120.1 62182703 complement(4407831..4410656) 1 NC_006905.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 4410656 uvrA 321314004530 uvrA Salmonella enterica subsp. enterica serovar Choleraesuis str. excinuclease ABC subunit A YP_219120.1 4407831 R 321314 CDS YP_219121.1 62182704 4410904..4411434 1 NC_006905.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4411434 ssb 321314004531 ssb Salmonella enterica subsp. enterica serovar Choleraesuis str. single-stranded DNA-binding protein YP_219121.1 4410904 D 321314 CDS YP_219122.1 62182705 4411902..4412066 1 NC_006905.1 hypothetical protein 4412066 321314004532 SC4135 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219122.1 4411902 D 321314 CDS YP_219123.1 62182706 4412474..4413106 1 NC_006905.1 hypothetical protein 4413106 321314004533 SC4136 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219123.1 4412474 D 321314 CDS YP_219124.1 62182707 4413103..4414491 1 NC_006905.1 methyl-accepting chemotaxis protein 4414491 mac 321314004534 mac Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting chemotaxis protein YP_219124.1 4413103 D 321314 CDS YP_219125.1 62182708 4414481..4415800 1 NC_006905.1 ABC transporter outer membrane protein 4415800 321314004535 SC4138 Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter outer membrane protein YP_219125.1 4414481 D 321314 CDS YP_219126.1 62182709 4415797..4417074 1 NC_006905.1 IPR003997: Gram-negative bacterial RTX secretion protein D; membrane permease, cation efflux pump 4417074 321314004536 SC4139 Salmonella enterica subsp. enterica serovar Choleraesuis str. membrane permease, cation efflux pump YP_219126.1 4415797 D 321314 CDS YP_219127.1 62182710 4417091..4433770 1 NC_006905.1 IPR000150: Cof protein; IPR000566: Lipocalin-related protein and Bos/Can/Equ allergen; IPR001220: Legume lectin, beta domain;IPR002126: Cadherin; inner membrane protein 4433770 321314004537 SC4140 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219127.1 4417091 D 321314 CDS YP_219128.1 62182711 4433810..4435876 1 NC_006905.1 IPR000508: Signal peptidase; IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; bacteriocin/lantibiotic ABC transporter 4435876 321314004538 SC4141 Salmonella enterica subsp. enterica serovar Choleraesuis str. bacteriocin/lantibiotic ABC transporter YP_219128.1 4433810 D 321314 CDS YP_219129.1 62182712 complement(4436154..4436525) 1 NC_006905.1 hypothetical protein 4436525 yjcB 321314004539 yjcB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219129.1 4436154 R 321314 CDS YP_219130.1 62182713 4436977..4438599 1 NC_006905.1 IPR001633: EAL domain; diguanylate cyclase/phosphodiesterase 4438599 yjcC 321314004540 yjcC Salmonella enterica subsp. enterica serovar Choleraesuis str. diguanylate cyclase/phosphodiesterase YP_219130.1 4436977 D 321314 CDS YP_219131.1 62182714 complement(4438587..4438910) 1 NC_006905.1 regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS 4438910 soxS 321314004541 soxS Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator SoxS YP_219131.1 4438587 R 321314 CDS YP_219132.1 62182715 4438997..4439455 1 NC_006905.1 IPR000551: Bacterial regulatory protein, MerR family; redox-sensing transcriptional activator SoxR 4439455 soxR 321314004542 soxR Salmonella enterica subsp. enterica serovar Choleraesuis str. redox-sensing transcriptional activator SoxR YP_219132.1 4438997 D 321314 CDS YP_219133.1 62182716 4439748..4440416 1 NC_006905.1 IPR004045: Glutathione S-transferase, N-terminal; IPR004046: Glutathione S-transferase, C-terminal; glutathione S-transferase 4440416 gth 321314004543 gth Salmonella enterica subsp. enterica serovar Choleraesuis str. glutathione S-transferase YP_219133.1 4439748 D 321314 CDS YP_219134.1 62182717 4440763..4442112 1 NC_006905.1 xanthine/uracil permease family protein 4442112 yjcD 321314004544 yjcD Salmonella enterica subsp. enterica serovar Choleraesuis str. xanthine/uracil permease family protein YP_219134.1 4440763 D 321314 CDS YP_219135.1 62182718 4442217..4443908 1 NC_006905.1 CPA1 family, Na:H transport protein 4443908 yjcE 321314004545 yjcE Salmonella enterica subsp. enterica serovar Choleraesuis str. CPA1 family, Na:H transport protein YP_219135.1 4442217 D 321314 CDS YP_219136.1 62182719 complement(4444003..4444890) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; LysR family transcriptional regulator 4444890 ywbI 321314004546 ywbI Salmonella enterica subsp. enterica serovar Choleraesuis str. LysR family transcriptional regulator YP_219136.1 4444003 R 321314 CDS YP_219137.1 62182720 4444994..4445404 1 NC_006905.1 IPR005538: LrgA family; hypothetical protein 4445404 ywbH 321314004547 ywbH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219137.1 4444994 D 321314 CDS YP_219138.1 62182721 4445397..4446086 1 NC_006905.1 hypothetical protein 4446086 ywgG 321314004548 ywgG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219138.1 4445397 D 321314 CDS YP_219139.1 62182722 complement(4446125..4447774) 1 NC_006905.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 4447774 actP 321314004549 actP Salmonella enterica subsp. enterica serovar Choleraesuis str. acetate permease YP_219139.1 4446125 R 321314 CDS YP_219140.1 62182723 complement(4447771..4448088) 1 NC_006905.1 hypothetical protein 4448088 yjcH 321314004550 yjcH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219140.1 4447771 R 321314 CDS YP_219141.1 62182724 complement(4448325..4450283) 1 NC_006905.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4450283 acs 321314004551 acs Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyl-CoA synthetase YP_219141.1 4448325 R 321314 CDS YP_219142.1 62182725 4450470..4450616 1 NC_006905.1 entericidin B 4450616 ecnB 321314004552 ecnB Salmonella enterica subsp. enterica serovar Choleraesuis str. entericidin B YP_219142.1 4450470 D 321314 CDS YP_219143.1 62182726 4450715..4452151 1 NC_006905.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4452151 nrfA 321314004553 nrfA Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome c552 YP_219143.1 4450715 D 321314 CDS YP_219144.1 62182727 4452196..4452762 1 NC_006905.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 4452762 nrfB 321314004554 nrfB Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome c nitrite reductase pentaheme subunit YP_219144.1 4452196 D 321314 CDS YP_219145.1 62182728 4452759..4453430 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; nitrite reductase; formate-dependent, Fe-S centers 4453430 nrfC 321314004555 nrfC Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrite reductase; formate-dependent, Fe-S centers YP_219145.1 4452759 D 321314 CDS YP_219146.1 62182729 4453427..4454383 1 NC_006905.1 nitrate reductase, formate dependent 4454383 nrfD 321314004556 nrfD Salmonella enterica subsp. enterica serovar Choleraesuis str. nitrate reductase, formate dependent YP_219146.1 4453427 D 321314 CDS YP_219147.1 62182730 4454376..4456598 1 NC_006905.1 IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR002541: Cytochrome c assembly protein; IPR003567: Cytochrome c-type biogenesis protein;IPR003568: Cytochrome c-type biogenesis protein CcmF;IPR003570: Cytochrome c-type biogenesis protein NrfE;IPR005616: Cytochrome C biogenesis protein; formate-dependent nitrite reductase 4456598 nrfE 321314004557 nrfE Salmonella enterica subsp. enterica serovar Choleraesuis str. formate-dependent nitrite reductase YP_219147.1 4454376 D 321314 CDS YP_219148.1 62182731 4456595..4457215 1 NC_006905.1 IPR001440: TPR repeat; formate-dependent nitrite reductase complex subunit NrfG 4457215 nrfG 321314004558 nrfG Salmonella enterica subsp. enterica serovar Choleraesuis str. formate-dependent nitrite reductase complex subunit NrfG YP_219148.1 4456595 D 321314 CDS YP_219149.1 62182732 complement(4457355..4457483) 1 NC_006905.1 hypothetical protein 4457483 321314004559 SC4162 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219149.1 4457355 R 321314 CDS YP_219150.1 62182733 4457560..4458870 1 NC_006905.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 4458870 gltP 321314004560 gltP Salmonella enterica subsp. enterica serovar Choleraesuis str. glutamate/aspartate:proton symporter YP_219150.1 4457560 D 321314 CDS YP_219151.1 62182734 complement(4459028..4459717) 1 NC_006905.1 hypothetical protein 4459717 yjcO 321314004561 yjcO Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219151.1 4459028 R 321314 CDS YP_219152.1 62182735 complement(4462396..4463304) 1 NC_006905.1 dioxygenase for synthesis of lipid 4463304 lpxO 321314004563 lpxO Salmonella enterica subsp. enterica serovar Choleraesuis str. dioxygenase for synthesis of lipid YP_219152.1 4462396 R 321314 CDS YP_219153.1 62182736 complement(4463562..4464026) 1 NC_006905.1 PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase 4464026 phnO 321314004564 phnO Salmonella enterica subsp. enterica serovar Choleraesuis str. aminoalkylphosphonic acid N-acetyltransferase YP_219153.1 4463562 R 321314 CDS YP_219154.1 62182737 complement(4464148..4464591) 1 NC_006905.1 IPR004360: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; hypothetical protein 4464591 phnB 321314004565 phnB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219154.1 4464148 R 321314 CDS YP_219155.1 62182738 complement(4464711..4465046) 1 NC_006905.1 hypothetical protein 4465046 phnA 321314004566 phnA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219155.1 4464711 R 321314 CDS YP_219156.1 62182739 4465513..4467015 1 NC_006905.1 IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; proline/glycine betaine transporter 4467015 proP 321314004567 proP Salmonella enterica subsp. enterica serovar Choleraesuis str. proline/glycine betaine transporter YP_219156.1 4465513 D 321314 CDS YP_219157.1 62182740 complement(4467182..4468261) 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR004358: Bacterial sensor protein, C-terminal; IPR005467: Histidine kinase; sensor protein BasS/PmrB 4468261 basS 321314004568 basS Salmonella enterica subsp. enterica serovar Choleraesuis str. sensor protein BasS/PmrB YP_219157.1 4467182 R 321314 CDS YP_219158.1 62182741 complement(4468262..4468930) 1 NC_006905.1 response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR 4468930 basR 321314004569 basR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator BasR YP_219158.1 4468262 R 321314 CDS YP_219159.1 62182742 complement(4468927..4470570) 1 NC_006905.1 with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; cell division protein 4470570 yjdB 321314004570 yjdB Salmonella enterica subsp. enterica serovar Choleraesuis str. cell division protein YP_219159.1 4468927 R 321314 CDS YP_219160.1 62182743 complement(4470704..4472041) 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; arginine:agmatin antiporter 4472041 yjdE 321314004571 yjdE Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine:agmatin antiporter YP_219160.1 4470704 R 321314 CDS YP_219161.1 62182744 complement(4472181..4472942) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; transcriptional activator of AdiA 4472942 adiY 321314004572 adiY Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional activator of AdiA YP_219161.1 4472181 R 321314 CDS YP_219162.1 62182745 complement(4473231..4475501) 1 NC_006905.1 catabolic; inducible by acid; IPR000310: Orn/Lys/Arg decarboxylase, major region; IPR005308: Orn/Lys/Arg decarboxylase, N-terminal domain; IPR008286: Orn/Lys/Arg decarboxylase, C-terminal; arginine decarboxylase 4475501 adi 321314004573 adi Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine decarboxylase YP_219162.1 4473231 R 321314 CDS YP_219163.1 62182746 complement(4475731..4476807) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; DNA-binding transcriptional regulator MelR 4476807 melR 321314004574 melR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator MelR YP_219163.1 4475731 R 321314 CDS YP_219164.1 62182747 4476932..4478287 1 NC_006905.1 IPR001088: Glycoside hydrolase, family 4; alpha-galactosidase 4478287 melA 321314004575 melA Salmonella enterica subsp. enterica serovar Choleraesuis str. alpha-galactosidase YP_219164.1 4476932 D 321314 CDS YP_219165.1 62182748 4478371..4479801 1 NC_006905.1 melibiose:sodium symporter 4479801 melB 321314004576 melB Salmonella enterica subsp. enterica serovar Choleraesuis str. melibiose:sodium symporter YP_219165.1 4478371 D 321314 CDS YP_219166.1 62182749 complement(4479899..4481545) 1 NC_006905.1 IPR000362: Fumarate lyase; IPR004646: Fe-S type hydro-lyases tartrate/fumarate alpha region; IPR004647: Fe-S type hydro-lyases tartrate/fumarate beta region; fumarase B (fumarate hydratase class I), anaerobic isozyme 4481545 fumB 321314004577 fumB Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarase B (fumarate hydratase class I), anaerobic isozyme YP_219166.1 4479899 R 321314 CDS YP_219167.1 62182750 complement(4481641..4482981) 1 NC_006905.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 4482981 dcuB 321314004578 dcuB Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic C4-dicarboxylate transporter YP_219167.1 4481641 R 321314 CDS YP_219168.1 62182751 complement(4483711..4484430) 1 NC_006905.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR 4484430 dcuR 321314004580 dcuR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator DcuR YP_219168.1 4483711 R 321314 CDS YP_219169.1 62182752 complement(4484427..4486058) 1 NC_006905.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS 4486058 dcuS 321314004581 dcuS Salmonella enterica subsp. enterica serovar Choleraesuis str. sensory histidine kinase DcuS YP_219169.1 4484427 R 321314 CDS YP_219170.1 62182753 4486433..4488862 1 NC_006905.1 IPR006655: Prokaryotic molybdopterin oxidoreductase; anaerobic dimethyl sulfoxide reductase subunit A 4488862 dmsA 321314004582 dmsA Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic dimethyl sulfoxide reductase subunit A YP_219170.1 4486433 D 321314 CDS YP_219171.1 62182754 4488876..4489502 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; anaerobic dimethyl sulfoxide reductase subunit B 4489502 dmsB 321314004583 dmsB Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic dimethyl sulfoxide reductase subunit B YP_219171.1 4488876 D 321314 CDS YP_219172.1 62182755 4489495..4490268 1 NC_006905.1 anaerobic dimethyl sulfoxide reductase subunit C 4490268 321314004584 SC4185 Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic dimethyl sulfoxide reductase subunit C YP_219172.1 4489495 D 321314 CDS YP_219173.1 62182756 4490284..4490937 1 NC_006905.1 hypothetical protein 4490937 ynfI 321314004585 ynfI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219173.1 4490284 D 321314 CDS YP_219174.1 62182757 complement(4491021..4492421) 1 NC_006905.1 hypothetical protein 4492421 321314004586 SC4187 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219174.1 4491021 R 321314 CDS YP_219175.1 62182758 4492725..4493630 1 NC_006905.1 hypothetical protein 4493630 yjiK 321314004587 yjiK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219175.1 4492725 D 321314 CDS YP_219176.1 62182759 complement(4494144..4494533) 1 NC_006905.1 hypothetical protein 4494533 321314004588 SC4189 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219176.1 4494144 R 321314 CDS YP_219177.1 62182760 complement(4494556..4494843) 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; LuxR family transcriptional regulator 4494843 321314004589 SC4190 Salmonella enterica subsp. enterica serovar Choleraesuis str. LuxR family transcriptional regulator YP_219177.1 4494556 R 321314 CDS YP_219178.1 62182761 complement(4494840..4495715) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; DNA-binding domain-containing protein 4495715 hilD 321314004590 hilD Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding domain-containing protein YP_219178.1 4494840 R 321314 CDS YP_219179.1 62182762 complement(4495981..4496202) 1 NC_006905.1 hypothetical protein 4496202 321314004591 SC4192 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219179.1 4495981 R 321314 CDS YP_219180.1 62182763 4496512..4496820 1 NC_006905.1 transposase insF 4496820 insF 321314004592 insF Salmonella enterica subsp. enterica serovar Choleraesuis str. transposase insF YP_219180.1 4496512 D 321314 CDS YP_219181.1 62182764 4497385..4497585 1 NC_006905.1 hypothetical protein 4497585 321314004593 SC4194 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219181.1 4497385 D 321314 CDS YP_219182.1 62182765 4497554..4498540 1 NC_006905.1 hypothetical protein 4498540 yggM 321314004594 yggM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219182.1 4497554 D 321314 CDS YP_219183.1 62182766 complement(4498629..4498808) 1 NC_006905.1 hypothetical protein 4498808 TnpA 321314004595 TnpA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219183.1 4498629 R 321314 CDS YP_219184.1 62182767 complement(4499817..4500569) 1 NC_006905.1 IPR000326: PA-phosphatase related phosphoesterase; IPR001011: Bacterial acid phosphatase, class A; IPR002048: Calcium-binding EF-hand; non-specific acid phosphatase 4500569 phoN 321314004597 phoN Salmonella enterica subsp. enterica serovar Choleraesuis str. non-specific acid phosphatase YP_219184.1 4499817 R 321314 CDS YP_219185.1 62182768 complement(4500612..4500746) 1 NC_006905.1 ail and ompX-like protein 4500746 ompX 321314004598 ompX Salmonella enterica subsp. enterica serovar Choleraesuis str. ail and ompX-like protein YP_219185.1 4500612 R 321314 CDS YP_219186.1 62182769 4500968..4501111 1 NC_006905.1 hypothetical protein 4501111 321314004599 SC4199 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219186.1 4500968 D 321314 CDS YP_219187.1 62182770 complement(4501471..4502046) 1 NC_006905.1 transcriptional regulator 4502046 yjdC 321314004601 yjdC Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional regulator YP_219187.1 4501471 R 321314 CDS YP_219188.1 62182771 complement(4502083..4503786) 1 NC_006905.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 4503786 dipZ 321314004602 dipZ Salmonella enterica subsp. enterica serovar Choleraesuis str. thiol:disulfide interchange protein YP_219188.1 4502083 R 321314 CDS YP_219189.1 62182772 complement(4503762..4504109) 1 NC_006905.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA 4504109 cutA 321314004603 cutA Salmonella enterica subsp. enterica serovar Choleraesuis str. divalent-cation tolerance protein CutA YP_219189.1 4503762 R 321314 CDS YP_219190.1 62182773 complement(4504230..4505531) 1 NC_006905.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4505531 dcuA 321314004604 dcuA Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic C4-dicarboxylate transporter YP_219190.1 4504230 R 321314 CDS YP_219191.1 62182774 complement(4505646..4507082) 1 NC_006905.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4507082 aspA 321314004605 aspA Salmonella enterica subsp. enterica serovar Choleraesuis str. aspartate ammonia-lyase YP_219191.1 4505646 R 321314 CDS YP_219192.1 62182775 complement(4507115..4507237) 1 NC_006905.1 hypothetical protein 4507237 321314004606 SC4205 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219192.1 4507115 R 321314 CDS YP_219193.1 62182776 4507423..4507899 1 NC_006905.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4507899 fxsA 321314004607 fxsA Salmonella enterica subsp. enterica serovar Choleraesuis str. FxsA protein YP_219193.1 4507423 D 321314 CDS YP_219194.1 62182777 complement(4507958..4509199) 1 NC_006905.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; hypothetical protein 4509199 yjeH 321314004608 yjeH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219194.1 4507958 R 321314 CDS YP_219195.2 162139508 4509475..4509768 1 NC_006905.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4509768 groES 321314004609 groES Salmonella enterica subsp. enterica serovar Choleraesuis str. co-chaperonin GroES YP_219195.2 4509475 D 321314 CDS YP_219196.1 62182779 4509812..4511458 1 NC_006905.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 4511458 groEL 321314004610 groEL Salmonella enterica subsp. enterica serovar Choleraesuis str. molecular chaperone GroEL YP_219196.1 4509812 D 321314 CDS YP_219197.1 62182780 4511684..4512055 1 NC_006905.1 hypothetical protein 4512055 yjeI 321314004611 yjeI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219197.1 4511684 D 321314 CDS YP_219198.1 62182781 complement(4512103..4512960) 1 NC_006905.1 hypothetical protein 4512960 yjeJ 321314004612 yjeJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219198.1 4512103 R 321314 CDS YP_219199.1 62182782 complement(4513242..4514270) 1 NC_006905.1 hypothetical protein 4514270 yjeK 321314004613 yjeK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219199.1 4513242 R 321314 CDS YP_219200.2 162139507 4514311..4514877 1 NC_006905.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4514877 efp 321314004614 efp Salmonella enterica subsp. enterica serovar Choleraesuis str. elongation factor P YP_219200.2 4514311 D 321314 CDS YP_219201.1 62182784 4514881..4515072 1 NC_006905.1 entericidin A 4515072 ecnA 321314004615 ecnA Salmonella enterica subsp. enterica serovar Choleraesuis str. entericidin A YP_219201.1 4514881 D 321314 CDS YP_219202.1 62182785 4515180..4515326 1 NC_006905.1 entericidin B 4515326 321314004616 SC4215 Salmonella enterica subsp. enterica serovar Choleraesuis str. entericidin B YP_219202.1 4515180 D 321314 CDS YP_219203.1 62182786 complement(4515357..4516001) 1 NC_006905.1 IPR000792: Bacterial regulatory protein, LuxR family; LuxR family transcriptional regulator 4516001 ecnR 321314004617 ecnR Salmonella enterica subsp. enterica serovar Choleraesuis str. LuxR family transcriptional regulator YP_219203.1 4515357 R 321314 CDS YP_219204.1 62182787 4516200..4516517 1 NC_006905.1 member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; quaternary ammonium compound-resistance protein SugE 4516517 sugE 321314004618 sugE Salmonella enterica subsp. enterica serovar Choleraesuis str. quaternary ammonium compound-resistance protein SugE YP_219204.1 4516200 D 321314 CDS YP_219205.1 62182788 complement(4516534..4517067) 1 NC_006905.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 4517067 blc 321314004619 blc Salmonella enterica subsp. enterica serovar Choleraesuis str. outer membrane lipoprotein Blc YP_219205.1 4516534 R 321314 CDS YP_219206.1 62182789 complement(4517179..4517538) 1 NC_006905.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4517538 frdD 321314004620 frdD Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarate reductase subunit D YP_219206.1 4517179 R 321314 CDS YP_219207.1 62182790 complement(4517549..4517944) 1 NC_006905.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 4517944 frdC 321314004621 frdC Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarate reductase subunit C YP_219207.1 4517549 R 321314 CDS YP_219208.1 62182791 complement(4517955..4518689) 1 NC_006905.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 4518689 frdB 321314004622 frdB Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarate reductase iron-sulfur subunit YP_219208.1 4517955 R 321314 CDS YP_219209.2 229037899 complement(4518682..4520472) 1 NC_006905.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 4520472 frdA 321314004623 frdA Salmonella enterica subsp. enterica serovar Choleraesuis str. fumarate reductase flavoprotein subunit YP_219209.2 4518682 R 321314 CDS YP_219210.1 62182793 4520795..4521772 1 NC_006905.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4521772 yjeA 321314004624 yjeA Salmonella enterica subsp. enterica serovar Choleraesuis str. lysyl-tRNA synthetase YP_219210.1 4520795 D 321314 CDS YP_219211.1 62182794 4521998..4523500 1 NC_006905.1 IPR002293: Amino acid/polyamine transporter family I; IPR004841: Amino acid permease-associated region; amino acid APC transporter 4523500 yjeM 321314004625 yjeM Salmonella enterica subsp. enterica serovar Choleraesuis str. amino acid APC transporter YP_219211.1 4521998 D 321314 CDS YP_219212.1 62182795 4523552..4523866 1 NC_006905.1 inner membrane protein 4523866 yjeO 321314004626 yjeO Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219212.1 4523552 D 321314 CDS YP_219213.1 62182796 complement(4523933..4527259) 1 NC_006905.1 IPR006686: Mechanosensitive (MS) ion channel subdomain; hypothetical protein 4527259 yjeP 321314004627 yjeP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219213.1 4523933 R 321314 CDS YP_219214.1 62182797 complement(4527278..4528246) 1 NC_006905.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4528246 psd 321314004628 psd Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphatidylserine decarboxylase YP_219214.1 4527278 R 321314 CDS YP_219215.2 162139506 complement(4528338..4529390) 1 NC_006905.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4529390 yjeQ 321314004629 yjeQ Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosome-associated GTPase YP_219215.2 4528338 R 321314 CDS YP_219216.1 62182799 4529497..4530042 1 NC_006905.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4530042 orn 321314004630 orn Salmonella enterica subsp. enterica serovar Choleraesuis str. oligoribonuclease YP_219216.1 4529497 D 321314 CDS YP_219217.1 62182800 complement(4530104..4530823) 1 NC_006905.1 IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3; arginine-binding periplasmic protein 4530823 artJ 321314004631 artJ Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine-binding periplasmic protein YP_219217.1 4530104 R 321314 CDS YP_219218.1 62182801 complement(4531928..4533115) 1 NC_006905.1 IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; Fe-S protein 4533115 yjeS 321314004635 yjeS Salmonella enterica subsp. enterica serovar Choleraesuis str. Fe-S protein YP_219218.1 4531928 R 321314 CDS YP_219219.1 62182802 4533066..4534613 1 NC_006905.1 IPR000631: Protein of unknown function UPF0031; IPR000875: Cecropin; hypothetical protein 4534613 yjeF 321314004636 yjeF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219219.1 4533066 D 321314 CDS YP_219220.1 62182803 4534585..4535046 1 NC_006905.1 possibly involved in cell wall synthesis; ATPase 4535046 yjeE 321314004637 yjeE Salmonella enterica subsp. enterica serovar Choleraesuis str. ATPase YP_219220.1 4534585 D 321314 CDS YP_219221.1 62182804 4535063..4536385 1 NC_006905.1 N-acetylmuramoyl-L-alanine amidase 4536385 amiB 321314004638 amiB Salmonella enterica subsp. enterica serovar Choleraesuis str. N-acetylmuramoyl-L-alanine amidase YP_219221.1 4535063 D 321314 CDS YP_219222.1 62182805 4536395..4538251 1 NC_006905.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4538251 mutL 321314004639 mutL Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA mismatch repair protein YP_219222.1 4536395 D 321314 CDS YP_219223.1 62182806 4538244..4539194 1 NC_006905.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4539194 miaA 321314004640 miaA Salmonella enterica subsp. enterica serovar Choleraesuis str. tRNA delta(2)-isopentenylpyrophosphate transferase YP_219223.1 4538244 D 321314 CDS YP_219224.1 62182807 4539277..4539585 1 NC_006905.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4539585 hfq 321314004641 hfq Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA-binding protein Hfq YP_219224.1 4539277 D 321314 CDS YP_219225.1 62182808 4539657..4540937 1 NC_006905.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4540937 hflX 321314004642 hflX Salmonella enterica subsp. enterica serovar Choleraesuis str. GTPase HflX YP_219225.1 4539657 D 321314 CDS YP_219226.1 62182809 4541152..4542411 1 NC_006905.1 with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4542411 hflK 321314004643 hflK Salmonella enterica subsp. enterica serovar Choleraesuis str. FtsH protease regulator HflK YP_219226.1 4541152 D 321314 CDS YP_219227.1 62182810 4542414..4543418 1 NC_006905.1 with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4543418 hflC 321314004644 hflC Salmonella enterica subsp. enterica serovar Choleraesuis str. FtsH protease regulator HflC YP_219227.1 4542414 D 321314 CDS YP_219228.1 62182811 4543497..4543694 1 NC_006905.1 inner membrane protein 4543694 yjeT 321314004645 yjeT Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219228.1 4543497 D 321314 CDS YP_219229.1 62182812 4543797..4545095 1 NC_006905.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4545095 purA 321314004646 purA Salmonella enterica subsp. enterica serovar Choleraesuis str. adenylosuccinate synthetase YP_219229.1 4543797 D 321314 CDS YP_219230.2 162139505 4545302..4545727 1 NC_006905.1 negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4545727 yjeB 321314004647 yjeB Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional repressor NsrR YP_219230.2 4545302 D 321314 CDS YP_219231.1 62182814 4545765..4548203 1 NC_006905.1 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 4548203 vacB 321314004648 vacB Salmonella enterica subsp. enterica serovar Choleraesuis str. exoribonuclease R YP_219231.1 4545765 D 321314 CDS YP_219232.1 62182815 4548294..4549025 1 NC_006905.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4549025 yjfH 321314004649 yjfH Salmonella enterica subsp. enterica serovar Choleraesuis str. 23S rRNA (guanosine-2'-O-)-methyltransferase YP_219232.1 4548294 D 321314 CDS YP_219233.1 62182816 4549157..4549561 1 NC_006905.1 hypothetical protein 4549561 yjfI 321314004650 yjfI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219233.1 4549157 D 321314 CDS YP_219234.1 62182817 4550233..4551336 1 NC_006905.1 IPR001622: K+ channel, pore region; resembles potassium channels 4551336 321314004652 SC4247 Salmonella enterica subsp. enterica serovar Choleraesuis str. resembles potassium channels YP_219234.1 4550233 D 321314 CDS YP_219235.1 62182818 4551309..4551992 1 NC_006905.1 hypothetical protein 4551992 yjfK 321314004653 yjfK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219235.1 4551309 D 321314 CDS YP_219236.1 62182819 4552010..4552408 1 NC_006905.1 inner membrane protein 4552408 yjfL 321314004654 yjfL Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219236.1 4552010 D 321314 CDS YP_219237.1 62182820 4552418..4553056 1 NC_006905.1 inner membrane protein 4553056 yjfM 321314004655 yjfM Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219237.1 4552418 D 321314 CDS YP_219238.2 162139504 4554289..4555929 1 NC_006905.1 catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4555929 aidB 321314004657 aidB Salmonella enterica subsp. enterica serovar Choleraesuis str. isovaleryl CoA dehydrogenase YP_219238.2 4554289 D 321314 CDS YP_219239.1 62182822 complement(4555974..4556249) 1 NC_006905.1 hypothetical protein 4556249 yjfN 321314004658 yjfN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219239.1 4555974 R 321314 CDS YP_219240.1 62182823 complement(4556380..4556709) 1 NC_006905.1 in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; biofilm stress and motility protein A 4556709 yjfO 321314004659 yjfO Salmonella enterica subsp. enterica serovar Choleraesuis str. biofilm stress and motility protein A YP_219240.1 4556380 R 321314 CDS YP_219241.1 62182824 4556893..4557642 1 NC_006905.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4557642 yjfP 321314004660 yjfP Salmonella enterica subsp. enterica serovar Choleraesuis str. esterase YP_219241.1 4556893 D 321314 CDS YP_219242.1 62182825 complement(4557639..4558394) 1 NC_006905.1 negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 4558394 yjfQ 321314004661 yjfQ Salmonella enterica subsp. enterica serovar Choleraesuis str. transcriptional repressor UlaR YP_219242.1 4557639 R 321314 CDS YP_219243.2 162139503 complement(4558499..4559563) 1 NC_006905.1 L-ascorbate 6-phosphate lactonase 4559563 yjfR 321314004662 yjfR Salmonella enterica subsp. enterica serovar Choleraesuis str. L-ascorbate 6-phosphate lactonase YP_219243.2 4558499 R 321314 CDS YP_219244.2 162139502 4559925..4561322 1 NC_006905.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4561322 ulaA 321314004663 ulaA Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system ascorbate-specific transporter subunit IIC YP_219244.2 4559925 D 321314 CDS YP_219245.1 62182828 4561338..4561643 1 NC_006905.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4561643 sgaB 321314004664 sgaB Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system L-ascorbate-specific transporter subunit IIB YP_219245.1 4561338 D 321314 CDS YP_219246.1 62182829 4561653..4562117 1 NC_006905.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4562117 ptxA 321314004665 ptxA Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system L-ascorbate-specific transporter subunit IIA YP_219246.1 4561653 D 321314 CDS YP_219247.2 162139501 4562131..4562781 1 NC_006905.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4562781 ulaD 321314004666 ulaD Salmonella enterica subsp. enterica serovar Choleraesuis str. 3-keto-L-gulonate-6-phosphate decarboxylase YP_219247.2 4562131 D 321314 CDS YP_219248.1 62182831 4562791..4563645 1 NC_006905.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4563645 sgaU 321314004667 sgaU Salmonella enterica subsp. enterica serovar Choleraesuis str. L-xylulose 5-phosphate 3-epimerase YP_219248.1 4562791 D 321314 CDS YP_219249.1 62182832 4563645..4564331 1 NC_006905.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4564331 sgaE 321314004668 sgaE Salmonella enterica subsp. enterica serovar Choleraesuis str. L-ribulose-5-phosphate 4-epimerase YP_219249.1 4563645 D 321314 CDS YP_219250.1 62182833 complement(4564460..4564735) 1 NC_006905.1 hypothetical protein 4564735 yjfY 321314004669 yjfY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219250.1 4564460 R 321314 CDS YP_219251.1 62182834 4564929..4565135 1 NC_006905.1 hypothetical protein 4565135 321314004670 SC4264 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219251.1 4564929 D 321314 CDS YP_219252.1 62182835 4565206..4565601 1 NC_006905.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4565601 rpsF 321314004671 rpsF Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S6 YP_219252.1 4565206 D 321314 CDS YP_219253.1 62182836 4565608..4565922 1 NC_006905.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4565922 priB 321314004672 priB Salmonella enterica subsp. enterica serovar Choleraesuis str. primosomal replication protein N YP_219253.1 4565608 D 321314 CDS YP_219254.1 62182837 4565927..4566154 1 NC_006905.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4566154 rpsR 321314004673 rpsR Salmonella enterica subsp. enterica serovar Choleraesuis str. 30S ribosomal protein S18 YP_219254.1 4565927 D 321314 CDS YP_219255.1 62182838 4566196..4566645 1 NC_006905.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4566645 rplI 321314004674 rplI Salmonella enterica subsp. enterica serovar Choleraesuis str. 50S ribosomal protein L9 YP_219255.1 4566196 D 321314 CDS YP_219256.1 62182839 4566793..4567719 1 NC_006905.1 hypothetical protein 4567719 yifZ 321314004675 yifZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219256.1 4566793 D 321314 CDS YP_219257.1 62182840 complement(4567769..4568404) 1 NC_006905.1 hypothetical protein 4568404 ytfB 321314004676 ytfB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219257.1 4567769 R 321314 CDS YP_219258.2 162139500 4568624..4569244 1 NC_006905.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4569244 fklB 321314004677 fklB Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidyl-prolyl cis-trans isomerase YP_219258.2 4568624 D 321314 CDS YP_219259.1 62182842 4569540..4570943 1 NC_006905.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 4570943 cycA 321314004678 cycA Salmonella enterica subsp. enterica serovar Choleraesuis str. D-alanine/D-serine/glycine permease YP_219259.1 4569540 D 321314 CDS YP_219260.1 62182843 4571281..4572420 1 NC_006905.1 hypothetical protein 4572420 321314004679 SC4273 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219260.1 4571281 D 321314 CDS YP_219261.1 62182844 4572435..4573823 1 NC_006905.1 hypothetical protein 4573823 321314004680 SC4274 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219261.1 4572435 D 321314 CDS YP_219262.1 62182845 complement(4573890..4574552) 1 NC_006905.1 Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein 4574552 ytfE 321314004681 ytfE Salmonella enterica subsp. enterica serovar Choleraesuis str. iron-sulfur cluster repair di-iron protein YP_219262.1 4573890 R 321314 CDS YP_219263.1 62182846 complement(4574655..4575620) 1 NC_006905.1 hypothetical protein 4575620 ytfF 321314004682 ytfF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219263.1 4574655 R 321314 CDS YP_219264.1 62182847 4576636..4577022 1 NC_006905.1 IPR002577: Protein of unknown function DUF24; hypothetical protein 4577022 ytfH 321314004684 ytfH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219264.1 4576636 D 321314 CDS YP_219265.1 62182848 complement(4577080..4579023) 1 NC_006905.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmicprotein 4579023 cpdB 321314004685 cpdB Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmicprotein YP_219265.1 4577080 R 321314 CDS YP_219266.1 62182849 4579291..4580031 1 NC_006905.1 catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; adenosine-3'(2'),5'-bisphosphate nucleotidase 4580031 cysQ 321314004686 cysQ Salmonella enterica subsp. enterica serovar Choleraesuis str. adenosine-3'(2'),5'-bisphosphate nucleotidase YP_219266.1 4579291 D 321314 CDS YP_219267.1 62182850 complement(4580021..4580578) 1 NC_006905.1 hypothetical protein 4580578 ytfJ 321314004687 ytfJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219267.1 4580021 R 321314 CDS YP_219268.1 62182851 4580839..4581111 1 NC_006905.1 hypothetical protein 4581111 ytfK 321314004688 ytfK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219268.1 4580839 D 321314 CDS YP_219269.1 62182852 complement(4581195..4582538) 1 NC_006905.1 IPR000644: CBS domain; hypothetical protein 4582538 ytfL 321314004689 ytfL Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219269.1 4581195 R 321314 CDS YP_219270.1 62182853 complement(4582721..4583359) 1 NC_006905.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 4583359 msrA 321314004690 msrA Salmonella enterica subsp. enterica serovar Choleraesuis str. methionine sulfoxide reductase A YP_219270.1 4582721 R 321314 CDS YP_219271.1 62182854 4583572..4585305 1 NC_006905.1 IPR000566: Lipocalin-related protein and Bos/Can/Equ allergen; hypothetical protein 4585305 ytfM 321314004691 ytfM Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219271.1 4583572 D 321314 CDS YP_219272.1 62182855 4585302..4589081 1 NC_006905.1 IPR000566: Lipocalin-related protein and Bos/Can/Equ allergen; hypothetical protein 4589081 ytfN 321314004692 ytfN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219272.1 4585302 D 321314 CDS YP_219273.1 62182856 4589084..4589428 1 NC_006905.1 hypothetical protein 4589428 ytfP 321314004693 ytfP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219273.1 4589084 D 321314 CDS YP_219274.1 62182857 complement(4589482..4590690) 1 NC_006905.1 IPR007114: Major facilitator superfamily; pemease 4590690 gudP 321314004694 gudP Salmonella enterica subsp. enterica serovar Choleraesuis str. pemease YP_219274.1 4589482 R 321314 CDS YP_219275.1 62182858 complement(4592259..4592789) 1 NC_006905.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4592789 ppa 321314004696 ppa Salmonella enterica subsp. enterica serovar Choleraesuis str. inorganic pyrophosphatase YP_219275.1 4592259 R 321314 CDS YP_219276.1 62182859 complement(4593016..4594014) 1 NC_006905.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 4594014 fbp 321314004697 fbp Salmonella enterica subsp. enterica serovar Choleraesuis str. fructose-1,6-bisphosphatase YP_219276.1 4593016 R 321314 CDS YP_219277.1 62182860 4594189..4595562 1 NC_006905.1 IPR000713: Cytoplasmic peptidoglycan synthetases, N-terminal; IPR004101: Cytoplasmic peptidoglycan synthetases, C-terminal; IPR005757: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4595562 mpl 321314004698 mpl Salmonella enterica subsp. enterica serovar Choleraesuis str. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_219277.1 4594189 D 321314 CDS YP_219278.1 62182861 complement(4595669..4596220) 1 NC_006905.1 hypothetical protein 4596220 yjgA 321314004699 yjgA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219278.1 4595669 R 321314 CDS YP_219279.2 162139499 4596316..4597668 1 NC_006905.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4597668 pmbA 321314004700 pmbA Salmonella enterica subsp. enterica serovar Choleraesuis str. peptidase PmbA YP_219279.2 4596316 D 321314 CDS YP_219280.1 62182863 4597767..4598153 1 NC_006905.1 cytochrome b(562) 4598153 cybC 321314004701 cybC Salmonella enterica subsp. enterica serovar Choleraesuis str. cytochrome b(562) YP_219280.1 4597767 D 321314 CDS YP_219281.1 62182864 4598157..4598312 1 NC_006905.1 hypothetical protein 4598312 321314004702 SC4294 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219281.1 4598157 D 321314 CDS YP_219282.1 62182865 4598450..4598779 1 NC_006905.1 hypothetical protein 4598779 321314004703 SC4295 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219282.1 4598450 D 321314 CDS YP_219283.1 62182866 4598790..4599152 1 NC_006905.1 hypothetical protein 4599152 321314004704 SC4296 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219283.1 4598790 D 321314 CDS YP_219284.1 62182867 4599128..4599454 1 NC_006905.1 hypothetical protein 4599454 321314004705 SC4297 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219284.1 4599128 D 321314 CDS YP_219285.1 62182868 4599477..4600253 1 NC_006905.1 inner membrane protein 4600253 321314004706 SC4298 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219285.1 4599477 D 321314 CDS YP_219286.1 62182869 4600265..4600909 1 NC_006905.1 inner membrane protein 4600909 321314004707 SC4299 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219286.1 4600265 D 321314 CDS YP_219287.1 62182870 4600968..4602101 1 NC_006905.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4602101 dho 321314004708 dho Salmonella enterica subsp. enterica serovar Choleraesuis str. dihydroorotase YP_219287.1 4600968 D 321314 CDS YP_219288.1 62182871 4602085..4603203 1 NC_006905.1 selenocysteine synthase [L-seryl-tRNA(Ser) selenium transferase 4603203 mlr 321314004709 mlr Salmonella enterica subsp. enterica serovar Choleraesuis str. selenocysteine synthase [L-seryl-tRNA(Ser) selenium transferase YP_219288.1 4602085 D 321314 CDS YP_219289.1 62182872 4603200..4603940 1 NC_006905.1 hypothetical protein 4603940 321314004710 SC4302 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219289.1 4603200 D 321314 CDS YP_219290.1 62182873 4603996..4605846 1 NC_006905.1 IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system mannitol/fructose-specific IIA component 4605846 licR 321314004711 licR Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphotransferase system mannitol/fructose-specific IIA component YP_219290.1 4603996 D 321314 CDS YP_219291.1 62182874 4605958..4606200 1 NC_006905.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4606200 relB 321314004712 relB Salmonella enterica subsp. enterica serovar Choleraesuis str. bifunctional antitoxin/transcriptional repressor RelB YP_219291.1 4605958 D 321314 CDS YP_219292.1 62182875 4606190..4606474 1 NC_006905.1 inner membrane protein 4606474 relE 321314004713 relE Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219292.1 4606190 D 321314 CDS YP_219293.1 62182876 complement(4606478..4606942) 1 NC_006905.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 4606942 nrdG 321314004714 nrdG Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic ribonucleotide reductase-activating protein YP_219293.1 4606478 R 321314 CDS YP_219294.1 62182877 complement(4607159..4609297) 1 NC_006905.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 4609297 nrdD 321314004715 nrdD Salmonella enterica subsp. enterica serovar Choleraesuis str. anaerobic ribonucleoside triphosphate reductase YP_219294.1 4607159 R 321314 CDS YP_219295.1 62182878 4609502..4609672 1 NC_006905.1 hypothetical protein 4609672 321314004716 SC4308 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219295.1 4609502 D 321314 CDS YP_219296.1 62182879 complement(4609747..4611354) 1 NC_006905.1 trehalose-6-phosphate hydrolase 4611354 treC 321314004717 treC Salmonella enterica subsp. enterica serovar Choleraesuis str. trehalose-6-phosphate hydrolase YP_219296.1 4609747 R 321314 CDS YP_219297.1 62182880 complement(4611404..4612723) 1 NC_006905.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunit IIBC 4612723 pttB 321314004718 pttB Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS system trehalose(maltose)-specific transporter subunit IIBC YP_219297.1 4611404 R 321314 CDS YP_219298.1 62182881 complement(4612861..4613808) 1 NC_006905.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 4613808 treR 321314004719 treR Salmonella enterica subsp. enterica serovar Choleraesuis str. trehalose repressor YP_219298.1 4612861 R 321314 CDS YP_219299.1 62182882 4614192..4616900 1 NC_006905.1 P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4616900 mgtA 321314004720 mgtA Salmonella enterica subsp. enterica serovar Choleraesuis str. magnesium-transporting ATPase MgtA YP_219299.1 4614192 D 321314 CDS YP_219300.1 62182883 complement(4616986..4617372) 1 NC_006905.1 IPR006056: YjgF-like protein; hypothetical protein 4617372 yjgF 321314004721 yjgF Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219300.1 4616986 R 321314 CDS YP_219301.1 62182884 complement(4617449..4617910) 1 NC_006905.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 4617910 pyrI 321314004722 pyrI Salmonella enterica subsp. enterica serovar Choleraesuis str. aspartate carbamoyltransferase YP_219301.1 4617449 R 321314 CDS YP_219302.1 62182885 complement(4617923..4618858) 1 NC_006905.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 4618858 pyrB 321314004723 pyrB Salmonella enterica subsp. enterica serovar Choleraesuis str. aspartate carbamoyltransferase YP_219302.1 4617923 R 321314 CDS YP_219303.1 62182886 4618975..4619115 1 NC_006905.1 hypothetical protein 4619115 yjgG 321314004724 yjgG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219303.1 4618975 D 321314 CDS YP_219304.1 62182887 complement(4619085..4619573) 1 NC_006905.1 IPR001669: Arginine repressor; arginine repressor 4619573 agrR 321314004725 agrR Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine repressor YP_219304.1 4619085 R 321314 CDS YP_219305.1 62182888 complement(4619760..4621163) 1 NC_006905.1 hypothetical protein 4621163 yfcC 321314004726 yfcC Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219305.1 4619760 R 321314 CDS YP_219306.1 62182889 complement(4621219..4622223) 1 NC_006905.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 4622223 otcC 321314004727 otcC Salmonella enterica subsp. enterica serovar Choleraesuis str. ornithine carbamoyltransferase YP_219306.1 4621219 R 321314 CDS YP_219307.1 62182890 complement(4622335..4623267) 1 NC_006905.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4623267 arcC 321314004728 arcC Salmonella enterica subsp. enterica serovar Choleraesuis str. carbamate kinase YP_219307.1 4622335 R 321314 CDS YP_219308.1 62182891 complement(4623278..4624501) 1 NC_006905.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 4624501 adi 321314004729 adi Salmonella enterica subsp. enterica serovar Choleraesuis str. arginine deiminase YP_219308.1 4623278 R 321314 CDS YP_219309.1 62182892 4624599..4624790 1 NC_006905.1 hypothetical protein 4624790 321314004730 SC4322 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219309.1 4624599 D 321314 CDS YP_219310.1 62182893 4625174..4625626 1 NC_006905.1 hypothetical protein 4625626 yjgK 321314004731 yjgK Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219310.1 4625174 D 321314 CDS YP_219311.1 62182894 complement(4625700..4626704) 1 NC_006905.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I 4626704 argI 321314004732 argI Salmonella enterica subsp. enterica serovar Choleraesuis str. ornithine carbamoyltransferase subunit I YP_219311.1 4625700 R 321314 CDS YP_219312.1 62182895 4626870..4627286 1 NC_006905.1 hypothetical protein 4627286 yjgD 321314004733 yjgD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219312.1 4626870 D 321314 CDS YP_219313.1 62182896 4627298..4628110 1 NC_006905.1 hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA 4628110 miaE 321314004734 miaE Salmonella enterica subsp. enterica serovar Choleraesuis str. hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA YP_219313.1 4627298 D 321314 CDS YP_219314.1 62182897 complement(4628143..4628265) 1 NC_006905.1 hypothetical protein 4628265 321314004735 SC4327 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219314.1 4628143 R 321314 CDS YP_219315.1 62182898 complement(4628344..4628832) 1 NC_006905.1 inner membrane protein 4628832 ytgA 321314004736 ytgA Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219315.1 4628344 R 321314 CDS YP_219316.1 62182899 complement(4628939..4629454) 1 NC_006905.1 acetyltransferase 4629454 yjgM 321314004737 yjgM Salmonella enterica subsp. enterica serovar Choleraesuis str. acetyltransferase YP_219316.1 4628939 R 321314 CDS YP_219317.1 62182900 4629637..4630824 1 NC_006905.1 inner membrane protein 4630824 yjgN 321314004738 yjgN Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219317.1 4629637 D 321314 CDS YP_219318.1 62182901 complement(4630966..4633821) 1 NC_006905.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4633821 valS 321314004739 valS Salmonella enterica subsp. enterica serovar Choleraesuis str. valyl-tRNA synthetase YP_219318.1 4630966 R 321314 CDS YP_219319.1 62182902 complement(4633821..4634264) 1 NC_006905.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4634264 holC 321314004740 holC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA polymerase III subunit chi YP_219319.1 4633821 R 321314 CDS YP_219320.1 62182903 complement(4634402..4635913) 1 NC_006905.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4635913 pepA 321314004741 pepA Salmonella enterica subsp. enterica serovar Choleraesuis str. leucyl aminopeptidase YP_219320.1 4634402 R 321314 CDS YP_219321.1 62182904 complement(4635957..4636076) 1 NC_006905.1 hypothetical protein 4636076 321314004742 SC4334 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219321.1 4635957 R 321314 CDS YP_219322.1 62182905 4636308..4637408 1 NC_006905.1 IPR005495: Predicted permease YjgP/YjgQ family; permease 4637408 yjgP 321314004743 yjgP Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_219322.1 4636308 D 321314 CDS YP_219323.1 62182906 4637408..4638490 1 NC_006905.1 permease 4638490 yjgQ 321314004744 yjgQ Salmonella enterica subsp. enterica serovar Choleraesuis str. permease YP_219323.1 4637408 D 321314 CDS YP_219324.1 62182907 complement(4638707..4639705) 1 NC_006905.1 IPR000843: Bacterial regulatory protein LacI, HTH motif; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; L-idonate regulator 4639705 idnR 321314004745 idnR Salmonella enterica subsp. enterica serovar Choleraesuis str. L-idonate regulator YP_219324.1 4638707 R 321314 CDS YP_219325.1 62182908 complement(4639769..4641202) 1 NC_006905.1 GntP family, L-idonate transport protein 4641202 idnT 321314004746 idnT Salmonella enterica subsp. enterica serovar Choleraesuis str. GntP family, L-idonate transport protein YP_219325.1 4639769 R 321314 CDS YP_219326.1 62182909 complement(4641150..4641914) 1 NC_006905.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 4641914 idnO 321314004747 idnO Salmonella enterica subsp. enterica serovar Choleraesuis str. gluconate 5-dehydrogenase YP_219326.1 4641150 R 321314 CDS YP_219327.1 62182910 complement(4641939..4642970) 1 NC_006905.1 NAD-binding; L-idonate 5-dehydrogenase 4642970 idnD 321314004748 idnD Salmonella enterica subsp. enterica serovar Choleraesuis str. L-idonate 5-dehydrogenase YP_219327.1 4641939 R 321314 CDS YP_219328.1 62182911 4643187..4643717 1 NC_006905.1 D-gluconate kinase 4643717 idnK 321314004749 idnK Salmonella enterica subsp. enterica serovar Choleraesuis str. D-gluconate kinase YP_219328.1 4643187 D 321314 CDS YP_219329.1 62182912 complement(4643745..4644764) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; IPR002328: Zinc-containing alcohol dehydrogenase; IPR006140: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; alcohol dehydrogenase 4644764 yjgB 321314004750 yjgB Salmonella enterica subsp. enterica serovar Choleraesuis str. alcohol dehydrogenase YP_219329.1 4643745 R 321314 CDS YP_219330.1 62182913 4646619..4647488 1 NC_006905.1 hypothetical protein 4647488 321314004753 SC4343 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219330.1 4646619 D 321314 CDS YP_219331.1 62182914 4648534..4648704 1 NC_006905.1 hypothetical protein 4648704 321314004754 SC4344 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219331.1 4648534 D 321314 CDS YP_219332.1 62182915 complement(4648993..4649364) 1 NC_006905.1 replication protein 4649364 321314004755 SC4345 Salmonella enterica subsp. enterica serovar Choleraesuis str. replication protein YP_219332.1 4648993 R 321314 CDS YP_219333.1 62182916 4649947..4650324 1 NC_006905.1 hypothetical protein 4650324 321314004756 SC4346 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219333.1 4649947 D 321314 CDS YP_219334.1 62182917 complement(4650642..4651313) 1 NC_006905.1 hypothetical protein 4651313 321314004757 SC4347 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219334.1 4650642 R 321314 CDS YP_219335.1 62182918 complement(4651600..4651851) 1 NC_006905.1 hypothetical protein 4651851 321314004758 SC4348 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219335.1 4651600 R 321314 CDS YP_219336.1 62182919 complement(4652038..4652868) 1 NC_006905.1 hypothetical protein 4652868 321314004759 SC4349 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219336.1 4652038 R 321314 CDS YP_219337.1 62182920 complement(4653805..4654170) 1 NC_006905.1 hypothetical protein 4654170 321314004760 SC4350 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219337.1 4653805 R 321314 CDS YP_219338.1 62182921 4654491..4655762 1 NC_006905.1 hypothetical protein 4655762 mta 321314004761 mta Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219338.1 4654491 D 321314 CDS YP_219339.1 62182922 4655773..4657860 1 NC_006905.1 IPR001687: ATP/GTP-binding site motif A (P-loop); hypothetical protein 4657860 321314004762 SC4352 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219339.1 4655773 D 321314 CDS YP_219340.1 62182923 4658481..4659503 1 NC_006905.1 hypothetical protein 4659503 321314004763 SC4353 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219340.1 4658481 D 321314 CDS YP_219341.1 62182924 4660161..4661036 1 NC_006905.1 hypothetical protein 4661036 321314004764 SC4354 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219341.1 4660161 D 321314 CDS YP_219342.2 162139498 complement(4661514..4662230) 1 NC_006905.1 IPR002876: Protein of unknown function DUF28; hypothetical protein 4662230 yeeN 321314004765 yeeN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219342.2 4661514 R 321314 CDS YP_219343.1 62182926 complement(4662789..4664420) 1 NC_006905.1 IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase; SAM-dependent methyltransferase 4664420 yjhP 321314004766 yjhP Salmonella enterica subsp. enterica serovar Choleraesuis str. SAM-dependent methyltransferase YP_219343.1 4662789 R 321314 CDS YP_219344.1 62182927 complement(4664425..4664682) 1 NC_006905.1 hypothetical protein 4664682 321314004767 SC4357 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219344.1 4664425 R 321314 CDS YP_219345.1 62182928 4665170..4665778 1 NC_006905.1 hypothetical protein 4665778 321314004768 SC4358 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219345.1 4665170 D 321314 CDS YP_219346.1 62182929 4666132..4667043 1 NC_006905.1 hypothetical protein 4667043 iicA 321314004769 iicA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219346.1 4666132 D 321314 CDS YP_219347.1 62182930 4667248..4667709 1 NC_006905.1 IPR005180: Protein of unknown function DUF302; hypothetical protein 4667709 321314004770 SC4360 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219347.1 4667248 D 321314 CDS YP_219348.1 62182931 complement(4667706..4668380) 1 NC_006905.1 IPR008262: Lipase, active site; hypothetical protein 4668380 yczH 321314004771 yczH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219348.1 4667706 R 321314 CDS YP_219349.1 62182932 4668730..4669503 1 NC_006905.1 regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4669503 uxuR 321314004772 uxuR Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional repressor UxuR YP_219349.1 4668730 D 321314 CDS YP_219350.1 62182933 complement(4669504..4670517) 1 NC_006905.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 4670517 trpS2 321314004773 trpS2 Salmonella enterica subsp. enterica serovar Choleraesuis str. tryptophanyl-tRNA synthetase YP_219350.1 4669504 R 321314 CDS YP_219351.1 62182934 4670814..4670966 1 NC_006905.1 hypothetical protein 4670966 321314004774 SC4364 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219351.1 4670814 D 321314 CDS YP_219352.1 62182935 4672005..4672739 1 NC_006905.1 IPR001920: Asp/Glu racemase; IPR004380: Aspartate racemase; aspartate racemase 4672739 pnl 321314004776 pnl Salmonella enterica subsp. enterica serovar Choleraesuis str. aspartate racemase YP_219352.1 4672005 D 321314 CDS YP_219353.1 62182936 complement(4672745..4673653) 1 NC_006905.1 IPR000847: Bacterial regulatory protein LysR, HTH motif; DNA-binding transcriptional regulator 4673653 yjiE 321314004777 yjiE Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional regulator YP_219353.1 4672745 R 321314 CDS YP_219354.1 62182937 complement(4673772..4674944) 1 NC_006905.1 IPR003764: N-acetylglucosamine-6-phosphate deacetylase; IPR005847: Dihydroorotase region; isoaspartyl dipeptidase 4674944 iadA 321314004778 iadA Salmonella enterica subsp. enterica serovar Choleraesuis str. isoaspartyl dipeptidase YP_219354.1 4673772 R 321314 CDS YP_219355.1 62182938 complement(4674957..4675418) 1 NC_006905.1 hypothetical protein 4675418 yjiG 321314004779 yjiG Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219355.1 4674957 R 321314 CDS YP_219356.1 62182939 complement(4675415..4676086) 1 NC_006905.1 hypothetical protein 4676086 yjiH 321314004780 yjiH Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219356.1 4675415 R 321314 CDS YP_219357.1 62182940 complement(4676958..4678142) 1 NC_006905.1 hypothetical protein 4678142 yjiJ 321314004781 yjiJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219357.1 4676958 R 321314 CDS YP_219358.1 62182941 complement(4678362..4679633) 1 NC_006905.1 hypothetical protein 4679633 yjiN 321314004782 yjiN Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219358.1 4678362 R 321314 CDS YP_219359.1 62182942 complement(4679720..4680961) 1 NC_006905.1 IPR000634: Serine/threonine dehydratase, pyridoxal-phosphate-binding site; IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily; MFS family transporter 4680961 yjiO 321314004783 yjiO Salmonella enterica subsp. enterica serovar Choleraesuis str. MFS family transporter YP_219359.1 4679720 R 321314 CDS YP_219360.1 62182943 4681440..4682270 1 NC_006905.1 hypothetical protein 4682270 yfcI 321314004784 yfcI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219360.1 4681440 D 321314 CDS YP_219361.1 62182944 complement(4682267..4682950) 1 NC_006905.1 integrase 4682950 yis2 321314004785 yis2 Salmonella enterica subsp. enterica serovar Choleraesuis str. integrase YP_219361.1 4682267 R 321314 CDS YP_219362.1 62182945 complement(4683121..4683522) 1 NC_006905.1 hypothetical protein 4683522 321314004786 SC4375 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219362.1 4683121 R 321314 CDS YP_219363.1 62182946 complement(4685367..4685510) 1 NC_006905.1 hypothetical protein 4685510 321314004788 SC4376 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219363.1 4685367 R 321314 CDS YP_219364.1 62182947 4685477..4685641 1 NC_006905.1 hypothetical protein 4685641 yjiS 321314004789 yjiS Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219364.1 4685477 D 321314 CDS YP_219365.1 62182948 complement(4685716..4686417) 1 NC_006905.1 inner membrane protein 4686417 321314004790 SC4378 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219365.1 4685716 R 321314 CDS YP_219366.1 62182949 complement(4686491..4686823) 1 NC_006905.1 involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE 4686823 yjiW 321314004791 yjiW Salmonella enterica subsp. enterica serovar Choleraesuis str. endoribonuclease SymE YP_219366.1 4686491 R 321314 CDS YP_219367.1 62182950 complement(4687148..4687789) 1 NC_006905.1 IPR001123: Lysine exporter protein (LYSE/YGGA); amino acid transporter LysE 4687789 lysE 321314004792 lysE Salmonella enterica subsp. enterica serovar Choleraesuis str. amino acid transporter LysE YP_219367.1 4687148 R 321314 CDS YP_219368.1 62182951 complement(4687837..4688652) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; IPR007113: Cupin domain; hypothetical protein 4688652 321314004793 SC4381 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219368.1 4687837 R 321314 CDS YP_219369.1 62182952 complement(4688690..4689646) 1 NC_006905.1 GTP-binding protein YjiA 4689646 yjiA 321314004794 yjiA Salmonella enterica subsp. enterica serovar Choleraesuis str. GTP-binding protein YjiA YP_219369.1 4688690 R 321314 CDS YP_219370.1 62182953 complement(4689657..4689860) 1 NC_006905.1 hypothetical protein 4689860 yjiX 321314004795 yjiX Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219370.1 4689657 R 321314 CDS YP_219371.1 62182954 complement(4689955..4692105) 1 NC_006905.1 IPR003706: Carbon starvation protein CstA; carbon starvation protein 4692105 yjiY 321314004796 yjiY Salmonella enterica subsp. enterica serovar Choleraesuis str. carbon starvation protein YP_219371.1 4689955 R 321314 CDS YP_219372.1 62182955 4692472..4694133 1 NC_006905.1 IPR003660: Histidine kinase, HAMP region; IPR004089: Bacterial chemotaxis sensory transducer; IPR004090: Methyl-accepting chemotaxis protein;IPR004091: Aspartate chemoreceptor protein; methyl-accepting chemotaxis protein I, serine sensor receptor 4694133 tsr 321314004797 tsr Salmonella enterica subsp. enterica serovar Choleraesuis str. methyl-accepting chemotaxis protein I, serine sensor receptor YP_219372.1 4692472 D 321314 CDS YP_219373.1 62182956 complement(4694245..4694463) 1 NC_006905.1 hypothetical protein 4694463 321314004798 SC4386 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219373.1 4694245 R 321314 CDS YP_219374.1 62182957 4697202..4697666 1 NC_006905.1 PTS permease 4697666 321314004800 SC4387 Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS permease YP_219374.1 4697202 D 321314 CDS YP_219375.1 62182958 4697681..4698142 1 NC_006905.1 IPR004720: PTS system sorbose subfamily IIB component; PTS permease 4698142 ptrB 321314004801 ptrB Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS permease YP_219375.1 4697681 D 321314 CDS YP_219376.1 62182959 4698168..4698947 1 NC_006905.1 PTS permease 4698947 ptnC 321314004802 ptnC Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS permease YP_219376.1 4698168 D 321314 CDS YP_219377.1 62182960 4698925..4699773 1 NC_006905.1 PTS permease 4699773 ptnD 321314004803 ptnD Salmonella enterica subsp. enterica serovar Choleraesuis str. PTS permease YP_219377.1 4698925 D 321314 CDS YP_219378.1 62182961 4699786..4700847 1 NC_006905.1 glucosamine-fructose-6-phosphate aminotransferase 4700847 glmS 321314004804 glmS Salmonella enterica subsp. enterica serovar Choleraesuis str. glucosamine-fructose-6-phosphate aminotransferase YP_219378.1 4699786 D 321314 CDS YP_219379.1 62182962 4700865..4701875 1 NC_006905.1 glucosamine-fructose-6-phosphate aminotransferase 4701875 321314004805 SC4392 Salmonella enterica subsp. enterica serovar Choleraesuis str. glucosamine-fructose-6-phosphate aminotransferase YP_219379.1 4700865 D 321314 CDS YP_219380.1 62182963 complement(4702009..4704300) 1 NC_006905.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 4704300 mdoB 321314004806 mdoB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglycerol transferase I YP_219380.1 4702009 R 321314 CDS YP_219381.1 62182964 complement(4704583..4705044) 1 NC_006905.1 hypothetical protein 4705044 yjjA 321314004807 yjjA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219381.1 4704583 R 321314 CDS YP_219382.1 62182965 complement(4705102..4705839) 1 NC_006905.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 4705839 dnaC 321314004808 dnaC Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA replication protein DnaC YP_219382.1 4705102 R 321314 CDS YP_219383.1 62182966 complement(4705842..4706381) 1 NC_006905.1 This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein DnaI 4706381 dnaT 321314004809 dnaT Salmonella enterica subsp. enterica serovar Choleraesuis str. primosomal protein DnaI YP_219383.1 4705842 R 321314 CDS YP_219384.1 62182967 complement(4706474..4706947) 1 NC_006905.1 hypothetical protein 4706947 yjjB 321314004810 yjjB Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219384.1 4706474 R 321314 CDS YP_219385.1 62182968 complement(4706938..4707882) 1 NC_006905.1 hypothetical protein 4707882 yjjP 321314004811 yjjP Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219385.1 4706938 R 321314 CDS YP_219386.1 62182969 complement(4707896..4708051) 1 NC_006905.1 hypothetical protein 4708051 321314004812 SC4399 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219386.1 4707896 R 321314 CDS YP_219387.2 162139497 4709163..4709786 1 NC_006905.1 regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4709786 bglJ 321314004814 bglJ Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding transcriptional activator BglJ YP_219387.2 4709163 D 321314 CDS YP_219388.1 62182971 complement(4709837..4710295) 1 NC_006905.1 hypothetical protein 4710295 321314004815 SC4401 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219388.1 4709837 R 321314 CDS YP_219389.1 62182972 complement(4710446..4711234) 1 NC_006905.1 ferric hydroximate transport ferric iron reductase 4711234 fhuF 321314004816 fhuF Salmonella enterica subsp. enterica serovar Choleraesuis str. ferric hydroximate transport ferric iron reductase YP_219389.1 4710446 R 321314 CDS YP_219390.1 62182973 complement(4711355..4712419) 1 NC_006905.1 IPR000160: GGDEF; diguanylate cyclase/phosphodiesterase domain-containing protein 4712419 yhcK 321314004817 yhcK Salmonella enterica subsp. enterica serovar Choleraesuis str. diguanylate cyclase/phosphodiesterase domain-containing protein YP_219390.1 4711355 R 321314 CDS YP_219391.1 62182974 4712631..4712906 1 NC_006905.1 hypothetical protein 4712906 yjjZ 321314004818 yjjZ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219391.1 4712631 D 321314 CDS YP_219392.1 62182975 complement(4713447..4714475) 1 NC_006905.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 4714475 rsmC 321314004822 rsmC Salmonella enterica subsp. enterica serovar Choleraesuis str. 16S ribosomal RNA m2G1207 methyltransferase YP_219392.1 4713447 R 321314 CDS YP_219393.2 162139496 4714960..4715406 1 NC_006905.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 4715406 rimI 321314004823 rimI Salmonella enterica subsp. enterica serovar Choleraesuis str. ribosomal-protein-alanine N-acetyltransferase YP_219393.2 4714960 D 321314 CDS YP_219394.1 62182977 4715425..4716105 1 NC_006905.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4716105 yjjG 321314004824 yjjG Salmonella enterica subsp. enterica serovar Choleraesuis str. nucleotidase YP_219394.1 4715425 D 321314 CDS YP_219395.1 62182978 4716197..4717786 1 NC_006905.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4717786 prfC 321314004825 prfC Salmonella enterica subsp. enterica serovar Choleraesuis str. peptide chain release factor 3 YP_219395.1 4716197 D 321314 CDS YP_219396.1 62182979 4718188..4718805 1 NC_006905.1 IPR007055: Transport-associated domain; hypothetical protein 4718805 osmY 321314004826 osmY Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219396.1 4718188 D 321314 CDS YP_219397.1 62182980 4718934..4719095 1 NC_006905.1 hypothetical protein 4719095 321314004827 SC4410 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219397.1 4718934 D 321314 CDS YP_219398.1 62182981 4719219..4720292 1 NC_006905.1 hypothetical protein 4720292 yjjU 321314004828 yjjU Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219398.1 4719219 D 321314 CDS YP_219399.1 62182982 4720289..4721062 1 NC_006905.1 IPR001130: TatD-related deoxyribonuclease; deoxyribonuclease YjjV 4721062 yjjV 321314004829 yjjV Salmonella enterica subsp. enterica serovar Choleraesuis str. deoxyribonuclease YjjV YP_219399.1 4720289 D 321314 CDS YP_219400.1 62182983 complement(4721095..4721958) 1 NC_006905.1 IPR000345: Cytochrome c heme-binding site; IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain; IPR001989: Radical-activating enzyme; pyruvate formate lyase activating enzyme 4721958 yjjW 321314004830 yjjW Salmonella enterica subsp. enterica serovar Choleraesuis str. pyruvate formate lyase activating enzyme YP_219400.1 4721095 R 321314 CDS YP_219401.1 62182984 complement(4721930..4723480) 1 NC_006905.1 hypothetical protein 4723480 yjjI 321314004831 yjjI Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219401.1 4721930 R 321314 CDS YP_219402.1 62182985 4723722..4724519 1 NC_006905.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4724519 deoC 321314004832 deoC Salmonella enterica subsp. enterica serovar Choleraesuis str. deoxyribose-phosphate aldolase YP_219402.1 4723722 D 321314 CDS YP_219403.2 162139495 4724643..4725965 1 NC_006905.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 4725965 deoA 321314004833 deoA Salmonella enterica subsp. enterica serovar Choleraesuis str. thymidine phosphorylase YP_219403.2 4724643 D 321314 CDS YP_219404.1 62182987 4726017..4727240 1 NC_006905.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4727240 deoB 321314004834 deoB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphopentomutase YP_219404.1 4726017 D 321314 CDS YP_219405.1 62182988 4727450..4728169 1 NC_006905.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4728169 deoD 321314004835 deoD Salmonella enterica subsp. enterica serovar Choleraesuis str. purine nucleoside phosphorylase YP_219405.1 4727450 D 321314 CDS YP_219406.1 62182989 4728366..4729676 1 NC_006905.1 hypothetical protein 4729676 yjjJ 321314004836 yjjJ Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219406.1 4728366 D 321314 CDS YP_219407.1 62182990 complement(4729681..4730697) 1 NC_006905.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A 4730697 lplA 321314004837 lplA Salmonella enterica subsp. enterica serovar Choleraesuis str. lipoate-protein ligase A YP_219407.1 4729681 R 321314 CDS YP_219408.1 62182991 complement(4730731..4731375) 1 NC_006905.1 hypothetical protein 4731375 smp 321314004838 smp Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219408.1 4730731 R 321314 CDS YP_219409.1 62182992 4731343..4731492 1 NC_006905.1 phosphoserine phosphatase 4731492 smp 321314004839 smp Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoserine phosphatase YP_219409.1 4731343 D 321314 CDS YP_219410.1 62182993 4731492..4732460 1 NC_006905.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4732460 serB 321314004840 serB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoserine phosphatase YP_219410.1 4731492 D 321314 CDS YP_219411.1 62182994 4732544..4733926 1 NC_006905.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4733926 radA 321314004841 radA Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA repair protein RadA YP_219411.1 4732544 D 321314 CDS YP_219412.1 62182995 4734077..4735309 1 NC_006905.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4735309 nadR 321314004842 nadR Salmonella enterica subsp. enterica serovar Choleraesuis str. nicotinamide-nucleotide adenylyltransferase YP_219412.1 4734077 D 321314 CDS YP_219413.1 62182996 complement(4735427..4737094) 1 NC_006905.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 4737094 yjjK 321314004843 yjjK Salmonella enterica subsp. enterica serovar Choleraesuis str. ABC transporter ATP-binding protein YP_219413.1 4735427 R 321314 CDS YP_219414.2 162139494 4737303..4739240 1 NC_006905.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4739240 slt 321314004844 slt Salmonella enterica subsp. enterica serovar Choleraesuis str. lytic murein transglycosylase YP_219414.2 4737303 D 321314 CDS YP_219415.1 62182998 4739298..4739624 1 NC_006905.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4739624 trpR 321314004845 trpR Salmonella enterica subsp. enterica serovar Choleraesuis str. Trp operon repressor YP_219415.1 4739298 D 321314 CDS YP_219416.1 62182999 complement(4739726..4740241) 1 NC_006905.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 4740241 yjjX 321314004846 yjjX Salmonella enterica subsp. enterica serovar Choleraesuis str. NTPase YP_219416.1 4739726 R 321314 CDS YP_219417.1 62183000 4740290..4740937 1 NC_006905.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4740937 gpmB 321314004847 gpmB Salmonella enterica subsp. enterica serovar Choleraesuis str. phosphoglycerate mutase YP_219417.1 4740290 D 321314 CDS YP_219418.1 62183001 complement(4740934..4741803) 1 NC_006905.1 IPR000005: Helix-turn-helix, AraC type; AraC family transcriptional regulator 4741803 rob 321314004848 rob Salmonella enterica subsp. enterica serovar Choleraesuis str. AraC family transcriptional regulator YP_219418.1 4740934 R 321314 CDS YP_219419.1 62183002 4742015..4742488 1 NC_006905.1 hypothetical protein 4742488 creA 321314004849 creA Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219419.1 4742015 D 321314 CDS YP_219420.1 62183003 4742501..4743190 1 NC_006905.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4743190 creB 321314004850 creB Salmonella enterica subsp. enterica serovar Choleraesuis str. DNA-binding response regulator CreB YP_219420.1 4742501 D 321314 CDS YP_219421.1 62183004 4743190..4744614 1 NC_006905.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4744614 creC 321314004851 creC Salmonella enterica subsp. enterica serovar Choleraesuis str. sensory histidine kinase CreC YP_219421.1 4743190 D 321314 CDS YP_219422.1 62183005 4744672..4746021 1 NC_006905.1 IPR000531: TonB-dependent receptor protein; hypothetical protein 4746021 creD 321314004852 creD Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219422.1 4744672 D 321314 CDS YP_219423.1 62183006 complement(4746079..4747164) 1 NC_006905.1 major fimbrial subunit 4747164 sthE 321314004853 sthE Salmonella enterica subsp. enterica serovar Choleraesuis str. major fimbrial subunit YP_219423.1 4746079 R 321314 CDS YP_219424.1 62183007 complement(4747205..4747762) 1 NC_006905.1 fimbrial subunit 4747762 sthD 321314004854 sthD Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial subunit YP_219424.1 4747205 R 321314 CDS YP_219425.1 62183008 complement(4747780..4750317) 1 NC_006905.1 IPR000015: Fimbrial biogenesis outer membrane usher protein; IPR001064: Beta and gamma crystallin; fimbrial usher protein 4750317 sthB 321314004855 sthB Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial usher protein YP_219425.1 4747780 R 321314 CDS YP_219426.1 62183009 complement(4750363..4751046) 1 NC_006905.1 IPR001829: Bacterial pili assembly chaperone; fimbrial chaperone protein 4751046 sthA 321314004856 sthA Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial chaperone protein YP_219426.1 4750363 R 321314 CDS YP_219427.1 62183010 complement(4751117..4751662) 1 NC_006905.1 fimbrial chaperone protein 4751662 fimF 321314004857 fimF Salmonella enterica subsp. enterica serovar Choleraesuis str. fimbrial chaperone protein YP_219427.1 4751117 R 321314 CDS YP_219428.1 62183011 complement(4752001..4752672) 1 NC_006905.1 inner membrane protein 4752672 321314004858 SC4441 Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219428.1 4752001 R 321314 CDS YP_219429.1 62183012 complement(4753057..4753371) 1 NC_006905.1 hypothetical protein 4753371 321314004859 SC4442 Salmonella enterica subsp. enterica serovar Choleraesuis str. hypothetical protein YP_219429.1 4753057 R 321314 CDS YP_219430.1 62183013 complement(4753638..4754354) 1 NC_006905.1 IPR001789: Response regulator receiver; IPR001867: Transcriptional regulatory protein, C terminal; two-component response regulator 4754354 arcA 321314004860 arcA Salmonella enterica subsp. enterica serovar Choleraesuis str. two-component response regulator YP_219430.1 4753638 R 321314 CDS YP_219431.1 62183014 4754450..4754590 1 NC_006905.1 inner membrane protein 4754590 yjjY 321314004861 yjjY Salmonella enterica subsp. enterica serovar Choleraesuis str. inner membrane protein YP_219431.1 4754450 D 321314 CDS YP_219432.1 62183015 4754990..4755676 1 NC_006905.1 member of the SPOUT superfamily of methyltransferases; RNA methyltransferase 4755676 lasT 321314004862 lasT Salmonella enterica subsp. enterica serovar Choleraesuis str. RNA methyltransferase YP_219432.1 4754990 D 321314 CDS